Rv0001 - c.720G>A
Drug resistance types
39 Sensitive
0 RR-TB
17 HR-TB
6 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
93 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.9 | 9 |
| 13 | |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.9 | 53 |
| lineage2.1 | 2 |
| lineage4.8 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage5.1.4 | 1 |
| lineage4.1.2.1 | 7 |
| lineage2.2 | 4 |
| La1;lineage4.9 | 1 |
| lineage2.2.1 | 9 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage4.2.1 | 1 |
| M.canetti | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.5 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| La3;lineage4.8 | 1 |
| lineage6.3.1 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.1.1.3 | 1 |
| lineage4 | 3 |
| lineage4.2.2.2 | 1 |
| lineage4.4.2 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.1.3 | 2 |
| lineage4.4.1.1 | 2 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.3.3 | 2 |
| lineage4.9;lineage6.3 | 3 |
| lineage1;lineage4.9 | 1 |
| La3;M.canetti | 1 |
| lineage4.1;lineage4.9 | 2 |
| lineage4.6.1.1 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La3;lineage1.1.2 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage3 | 3 |
| M.canetti;lineage1 | 1 |
| lineage4.3.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 156 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR7496509 | Other | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR2229542 | Other | lineage4.8 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR4769452 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675311 | Other | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | SRR3675221 | Other | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR9786604 | Other | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4407463 | HR-TB | None | ERR266123 | Sensitive | M.canetti | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR18213713 | HR-TB | None | ERR4817893 | Other | La3;lineage4.8 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR6046046 | Other | lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR4815604 | Other | None | SRR6046066 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR400345 | Other | lineage4.9 | None | ERR4816999 | Other | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR25515165 | HR-TB | lineage4.4.2 | None | ERR400326 | Other | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR3283044 | Other | lineage4 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR3675549 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR266124 | Other | M.canetti | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786671 | Other | None | SRR3675572 | Other | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR266125 | Other | La3;M.canetti | None | ERR369162 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR3797069 | Other | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6045053 | Other | lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR4816585 | Other | lineage2.2 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR6789626 | Other | None | ERR4769450 | Other | lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | SRR29096178 | Sensitive | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR6046245 | Other | lineage4.9 | None | SRR3675318 | Other | lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR4800341 | Other | lineage3 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR9117709 | Other | None | SRR3675247 | Other | lineage4.9 | None |
|---|
