lineage | Count |
---|---|
lineage2.2 | 6 |
lineage4.8;lineage4.1 | 2 |
lineage4.3.2 | 1 |
lineage5.2 | 2 |
lineage4.3.4.2.1 | 3 |
126 | |
lineage1.1.2 | 2 |
lineage4.6.2.2 | 3 |
lineage4.1.2.1 | 14 |
lineage4.8 | 4 |
lineage4.1.3 | 2 |
lineage6.1.1 | 2 |
lineage6.3.1 | 1 |
lineage6 | 1 |
lineage4.6.1.1 | 2 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage3 | 9 |
lineage4.9 | 58 |
lineage4.3.3 | 2 |
lineage4 | 56 |
lineage2.2.1.1 | 4 |
lineage2.2.1 | 15 |
lineage4.9;lineage2.2 | 1 |
lineage4.4.1.1.1 | 1 |
lineage3.1 | 1 |
lineage1.2.1.2 | 1 |
lineage2 | 2 |
lineage4.5 | 1 |
lineage9;lineage3.1 | 1 |
lineage4.9;La3 | 1 |
lineage4.2;La1.7 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.1.1 | 2 |
lineage2.1 | 1 |
lineage4.4.1.1 | 2 |
lineage4;lineage2 | 1 |
lineage4.8;La3 | 1 |
La1.8.1 | 1 |
lineage4;lineage1.1 | 1 |
lineage4.7 | 1 |
lineage4.3.2.1 | 1 |
lineage4.2.1 | 1 |
La2 | 1 |
lineage4.3.4.1 | 2 |
lineage4.4.1.1;lineage1.2.2.1 | 2 |
lineage4.2.1.1 | 1 |
La1 | 1 |
lineage5.1.2 | 1 |
lineage4;lineage3.1 | 1 |
lineage4;lineage3 | 1 |
lineage3.1.2 | 1 |
La1.2 | 1 |
lineage4.9.1 | 1 |
spoligotype | Count |
---|---|
None | 352 |
ID | Drug resistance | Lineage | Country iso2 | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9786843 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787165 | Other | lineage6 | None | ERR9787197 | Other | None | ERR987722 | HR-TB | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR990545 | Other | lineage3 | None | SRR1175049 | RR-TB | None | SRR1169194 | Other | None | SRR1172310 | HR-TB | None | SRR1172717 | Other | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1172857 | MDR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173363 | HR-TB | None | SRR1173400 | Other | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1174897 | HR-TB | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1172234 | Other | None | SRR1172951 | Other | None | SRR1173153 | HR-TB | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR15368973 | Other | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1184294 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196768 | MDR-TB | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR12416824 | HR-TB | None | SRR15014682 | MDR-TB | lineage4.8 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181251 | Other | lineage2.2.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1181328 | Other | lineage2.2.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR12142341 | HR-TB | None | SRR19303884 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR16157123 | Other | lineage4.9 | None | SRR17832802 | HR-TB | lineage3 | None | SRR26399239 | Sensitive | lineage4.9 | None | SRR19304036 | HR-TB | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | ERR4815604 | HR-TB | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR3675502 | Other | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | ERR4814331 | Sensitive | lineage4.9 | None | SRR3675292 | Sensitive | lineage4 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675501 | HR-TB | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675236 | HR-TB | None | SRR3675265 | Other | lineage4 | None | SAMN02585910 | Other | lineage2.2.1 | None | SRR3675488 | HR-TB | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675221 | HR-TB | None | SRR3675222 | Other | None | SRR3675234 | Other | None | ERR1750908 | Sensitive | lineage4 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675311 | Other | None | SRR3675312 | HR-TB | lineage4 | None | ERR4814976 | Other | lineage4.9 | None | ERR176740 | HR-TB | None | ERR176751 | HR-TB | None | ERR4815752 | Other | lineage4.9 | None | ERR4816999 | Other | None | ERR2229542 | Other | lineage4.8 | None | SRR3675510 | Other | None | ERR4816964 | Other | lineage4.9 | None | SRR3675527 | RR-TB | lineage4.9 | None | ERR4816585 | Other | lineage2.2 | None | ERR2027263 | Other | lineage4 | None | ERR212001 | HR-TB | None | SRR3675550 | Other | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR4817060 | RR-TB | None | SRR3675572 | Other | None | SRR3675574 | HR-TB | None | ERR212121 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816113 | Sensitive | lineage4.1.1 | None | ERR4816466 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816656 | HR-TB | None | ERR4818561 | HR-TB | lineage4 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4817893 | Other | lineage4.8;La3 | None | SRR7496472 | Other | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4817735 | Other | lineage4.8 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4817998 | Other | lineage3 | None | ERR4818021 | Other | La1.8.1 | None | ERR1035162 | Other | None | ERR234659 | HR-TB | None | ERR4818929 | HR-TB | None | SRR5007188 | Other | lineage4 | None | ERR4818615 | Other | None | SRR5341470 | HR-TB | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR1035138 | MDR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341293 | HR-TB | lineage4 | None | ERR2514692 | Other | None | SRR5341302 | HR-TB | None | ERR4819910 | Other | lineage4.9 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | SRR5341333 | HR-TB | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2693231 | Other | None | SRR5341418 | Other | None | ERR4819546 | HR-TB | lineage3 | None | SRR5341432 | HR-TB | lineage4 | None | ERR4819932 | Other | lineage4.7 | None | ERR2693254 | Other | None | ERR2693230 | Other | None | SRR6045503 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | ERR2693257 | Other | None | SRR6045526 | HR-TB | None | SRR6045519 | HR-TB | None | ERR2693227 | Other | lineage4.9 | None | ERR4821578 | Other | lineage4.1.2.1 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6044790 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046225 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6046362 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046644 | HR-TB | None | ERR4830353 | Other | None | SRR6046460 | HR-TB | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046604 | Sensitive | lineage2.2.1 | None | SRR6046824 | HR-TB | None | SRR6046897 | Sensitive | lineage4 | None | SRR6046863 | Sensitive | lineage1.1.2 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR502524 | HR-TB | La2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6789626 | Other | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR11465711 | Other | lineage4.4.1.1;lineage1.2.2.1 | None | ERR2510501 | RR-TB | lineage3 | pk | ERR294266 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR502532 | HR-TB | None | ERR323053 | HR-TB | None | SRR7496509 | Other | None | SRR7496517 | Other | None | ERR502889 | Other | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR323039 | HR-TB | None | ERR323043 | HR-TB | None | ERR11465509 | Sensitive | lineage4.3.4.2.1 | None | ERR323108 | HR-TB | lineage4 | None | ERR067681 | HR-TB | None | ERR067712 | HR-TB | lineage4 | None | ERR1034652 | Other | None | ERR1034634 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR108471 | HR-TB | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR11465714 | Other | lineage4.4.1.1;lineage1.2.2.1 | None | ERR133986 | HR-TB | None | ERR3283024 | Other | None | ERR3283010 | Other | La1 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283027 | HR-TB | None | ERR2513210 | Sensitive | lineage3 | gb | ERR3283040 | HR-TB | None | ERR3283036 | HR-TB | None | ERR349265 | Sensitive | lineage4 | None | ERR3439432 | Other | None | ERR349264 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR5336148 | Other | None | ERR349330 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363445 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797069 | Other | None | ERR3797015 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797044 | Other | None | ERR3797061 | Other | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR403298 | HR-TB | lineage4 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR4178226 | Sensitive | lineage4 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4407463 | HR-TB | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR2513553 | Other | lineage4;lineage3 | gb | ERR4769457 | Other | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798431 | HR-TB | None | ERR4798406 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4798504 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR4811142 | MDR-TB | None | ERR6358991 | HR-TB | None | ERR6198317 | Other | La1.2 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6359045 | HR-TB | None | ERR6865502 | Sensitive | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR702404 | HR-TB | None | ERR736865 | HR-TB | None | ERR702406 | HR-TB | None | ERR245758 | Other | lineage4.9.1 | None | ERR736839 | Other | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None |
---|