TB-Profiler result

Run: SRR26399239

Summary

Run ID: SRR26399239

Sample name:

Date: 05-02-2024 04:49:55

Number of reads: 121159

Percentage reads mapped: 59.78

Strain: lineage4.9

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Rifampicin
Isoniazid
Ethambutol
Pyrazinamide
Streptomycin
Fluoroquinolones
Moxifloxacin
Ofloxacin
Levofloxacin
Ciprofloxacin
Aminoglycosides
Amikacin
Capreomycin
Kanamycin
Cycloserine
Ethionamide
Clofazimine
Para-aminosalicylic_acid
Delamanid
Bedaquiline
Linezolid
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 0.97
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7406 c.105G>C synonymous_variant 1.0
gyrA 7415 c.114C>A synonymous_variant 1.0
gyrA 7418 c.117C>T synonymous_variant 1.0
gyrA 7421 c.120G>C synonymous_variant 1.0
gyrA 7442 c.141G>C synonymous_variant 1.0
gyrA 7448 c.147G>A synonymous_variant 1.0
gyrA 7451 c.150C>G synonymous_variant 0.97
gyrA 7457 c.156T>C synonymous_variant 1.0
gyrA 7463 c.162G>C synonymous_variant 1.0
gyrA 7472 c.171T>C synonymous_variant 1.0
gyrA 7475 c.174A>C synonymous_variant 1.0
gyrA 7480 p.Phe60Tyr missense_variant 1.0
gyrA 7484 c.183T>C synonymous_variant 1.0
gyrA 7487 c.186C>G synonymous_variant 1.0
gyrA 7490 c.189C>G synonymous_variant 1.0
gyrA 7496 c.195C>T synonymous_variant 1.0
gyrA 7499 c.198G>C synonymous_variant 1.0
gyrA 7506 p.Ser69Gly missense_variant 1.0
gyrA 7517 c.216G>A synonymous_variant 1.0
gyrA 7523 c.222C>G synonymous_variant 1.0
gyrA 7532 c.231T>C synonymous_variant 1.0
gyrA 7569 p.Ala90Ser missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7587 c.286C>T synonymous_variant 0.95
gyrA 7601 c.300C>G synonymous_variant 1.0
gyrA 7605 p.Pro102Ser missense_variant 1.0
gyrA 7614 p.Leu105Met missense_variant 1.0
gyrA 7631 c.330G>C synonymous_variant 1.0
gyrA 7637 c.336C>T synonymous_variant 0.94
gyrA 7652 c.351C>G synonymous_variant 1.0
gyrA 7658 c.357A>G synonymous_variant 1.0
gyrA 7661 c.360C>T synonymous_variant 1.0
gyrA 7664 c.363T>C synonymous_variant 1.0
gyrA 7670 c.369A>G synonymous_variant 1.0
gyrA 7671 p.Pro124Ala missense_variant 1.0
gyrA 7679 c.378G>C synonymous_variant 1.0
gyrA 7683 c.382A>C synonymous_variant 1.0
gyrA 7694 c.393A>G synonymous_variant 0.97
gyrA 7697 c.396C>A synonymous_variant 1.0
gyrA 7706 c.405C>G synonymous_variant 1.0
gyrA 7710 c.409T>C synonymous_variant 1.0
gyrA 7728 c.427_429delAGGinsCGC synonymous_variant 1.0
gyrA 7748 c.447A>C synonymous_variant 1.0
gyrA 7763 c.462T>C synonymous_variant 1.0
gyrA 7781 c.480G>C synonymous_variant 1.0
gyrA 7790 c.489G>C synonymous_variant 1.0
gyrA 7797 c.496_498delCTAinsTTG synonymous_variant 1.0
gyrA 7821 c.520C>T synonymous_variant 1.0
gyrA 7832 c.531G>C synonymous_variant 1.0
gyrA 7835 c.534A>C synonymous_variant 1.0
gyrA 8930 c.1629C>G synonymous_variant 1.0
gyrA 8939 c.1638T>C synonymous_variant 1.0
gyrA 8945 c.1644G>T synonymous_variant 1.0
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 1.0
gyrA 8951 c.1650G>A synonymous_variant 1.0
gyrA 8967 p.Ala556Lys missense_variant 1.0
gyrA 8981 c.1680G>C synonymous_variant 1.0
gyrA 8996 c.1695T>C synonymous_variant 1.0
gyrA 8998 p.Leu566Trp missense_variant 1.0
gyrA 9023 c.1722A>C synonymous_variant 1.0
gyrA 9029 c.1728T>G synonymous_variant 1.0
gyrA 9032 c.1731T>C synonymous_variant 1.0
gyrA 9035 c.1734G>C synonymous_variant 1.0
gyrA 9051 c.1750T>C synonymous_variant 1.0
gyrA 9056 c.1755C>G synonymous_variant 1.0
gyrA 9068 c.1767G>C synonymous_variant 1.0
gyrA 9071 c.1770G>C synonymous_variant 1.0
gyrA 9074 c.1773G>C synonymous_variant 1.0
gyrA 9080 c.1779G>C synonymous_variant 1.0
gyrA 9099 c.1798_1800delTTAinsCTG synonymous_variant 0.95
gyrA 9113 c.1812C>G synonymous_variant 1.0
gyrA 9119 c.1818A>G synonymous_variant 1.0
mshA 575864 c.517T>C synonymous_variant 0.96
mshA 575878 c.531A>C synonymous_variant 0.95
mshA 575884 c.537G>C synonymous_variant 0.94
mshA 575887 c.540G>C synonymous_variant 0.93
rpoB 761015 c.1209G>C synonymous_variant 0.92
rpoB 761027 c.1221A>G synonymous_variant 0.93
rpoB 761036 c.1230G>C synonymous_variant 0.94
rpoB 761037 c.1231T>C synonymous_variant 0.94
rpoB 761051 c.1245G>C synonymous_variant 0.96
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.97
rpoB 761102 c.1296A>G synonymous_variant 0.97
rpoB 761150 c.1344A>T synonymous_variant 0.97
rpoB 761171 c.1365C>T synonymous_variant 0.97
rpoB 761180 c.1374A>G synonymous_variant 0.97
rpoB 761183 c.1377T>G synonymous_variant 0.96
rpoB 761189 c.1383T>G synonymous_variant 0.96
rpoB 761220 c.1414_1416delTCGinsAGC synonymous_variant 0.95
rpoB 761249 c.1443A>G synonymous_variant 1.0
rpoB 761255 c.1449T>G synonymous_variant 1.0
rpoB 761258 c.1452G>A synonymous_variant 1.0
rpoB 761261 c.1455G>C synonymous_variant 1.0
rpoB 761579 c.1773G>C synonymous_variant 0.96
rpoB 761627 c.1821C>T synonymous_variant 0.95
rpoB 761636 c.1830G>C synonymous_variant 0.96
rpoB 761645 c.1839C>G synonymous_variant 0.95
rpoB 761648 c.1842T>C synonymous_variant 0.95
rpoB 761666 c.1860G>C synonymous_variant 1.0
rpoB 761675 c.1869G>C synonymous_variant 1.0
rpoB 761682 c.1876C>T synonymous_variant 1.0
rpoB 761687 c.1881C>T synonymous_variant 1.0
rpoB 761690 c.1884G>C synonymous_variant 1.0
rpoB 761693 c.1887G>C synonymous_variant 1.0
rpoB 761705 c.1899C>T synonymous_variant 1.0
rpoB 761732 c.1926C>G synonymous_variant 1.0
rpoB 761735 c.1929C>G synonymous_variant 1.0
rpoB 761747 c.1941G>C synonymous_variant 1.0
rpoB 761750 c.1944G>C synonymous_variant 1.0
rpoB 761765 c.1959T>G synonymous_variant 1.0
rpoB 761772 p.His656Ala missense_variant 1.0
rpoB 761778 p.Asn658Asp missense_variant 1.0
rpoB 761789 c.1983G>C synonymous_variant 1.0
rpoB 761790 c.1984_1986delCGTinsAGG synonymous_variant 1.0
rpoB 761813 c.2007T>C synonymous_variant 1.0
rpoB 761814 p.Ala670Asn missense_variant 1.0
rpoB 761834 c.2028T>C synonymous_variant 1.0
rpoB 762078 c.2272C>T synonymous_variant 1.0
rpoB 762083 c.2277T>C synonymous_variant 1.0
rpoB 762086 c.2280G>C synonymous_variant 1.0
rpoB 762110 c.2304G>C synonymous_variant 1.0
rpoB 762140 c.2334G>C synonymous_variant 1.0
rpoB 762143 c.2337T>C synonymous_variant 1.0
rpoB 762149 c.2343G>C synonymous_variant 1.0
rpoB 762170 c.2364C>G synonymous_variant 1.0
rpoB 762176 c.2370T>C synonymous_variant 1.0
rpoB 762185 c.2379G>T synonymous_variant 1.0
rpoB 762362 p.Glu852Asp missense_variant 1.0
rpoB 762369 c.2563T>C synonymous_variant 1.0
rpoC 762374 c.-996G>C upstream_gene_variant 1.0
rpoC 762380 c.-990T>G upstream_gene_variant 1.0
rpoC 762395 c.-975G>C upstream_gene_variant 1.0
rpoC 762398 c.-972T>G upstream_gene_variant 1.0
rpoC 762401 c.-969G>C upstream_gene_variant 1.0
rpoC 762404 c.-966T>C upstream_gene_variant 1.0
rpoC 762407 c.-963G>C upstream_gene_variant 1.0
rpoC 762410 c.-960T>G upstream_gene_variant 1.0
rpoC 762416 c.-954A>G upstream_gene_variant 1.0
rpoC 762467 c.-903C>T upstream_gene_variant 1.0
rpoB 762486 p.Pro894Ala missense_variant 1.0
rpoB 762489 p.Val895Gln missense_variant 1.0
rpoC 762509 c.-861T>G upstream_gene_variant 0.97
rpoB 762510 p.Ala902Pro missense_variant 0.97
rpoC 762518 c.-852C>A upstream_gene_variant 1.0
rpoC 762527 c.-843G>C upstream_gene_variant 1.0
rpoC 762533 c.-837T>C upstream_gene_variant 1.0
rpoC 762536 c.-834T>C upstream_gene_variant 1.0
rpoC 762551 c.-819C>T upstream_gene_variant 1.0
rpoC 762581 c.-789T>C upstream_gene_variant 1.0
rpoC 762582 c.-788T>C upstream_gene_variant 1.0
rpoC 763741 c.372C>T synonymous_variant 1.0
rpoC 763747 c.378G>A synonymous_variant 1.0
rpoC 763765 c.396T>C synonymous_variant 1.0
rpoC 763781 p.Ser138Ala missense_variant 0.96
rpoC 763792 p.Glu141Asp missense_variant 0.96
rpoC 763801 c.432C>G synonymous_variant 0.96
rpoC 763807 c.438T>C synonymous_variant 0.96
rpoC 763813 c.444C>G synonymous_variant 0.96
rpoC 763816 c.447C>G synonymous_variant 0.96
rpoC 763819 c.450G>C synonymous_variant 0.96
rpoC 763825 c.456G>A synonymous_variant 0.97
rpoC 763831 c.462A>G synonymous_variant 0.97
rpoC 763836 p.Ala156Gly missense_variant 0.97
rpoC 763858 c.489A>G synonymous_variant 0.97
rpoC 763867 c.498C>T synonymous_variant 0.97
rpoC 763872 p.Gly168Ala missense_variant 0.97
rpoC 763876 p.Glu169Asp missense_variant 0.97
rpoC 763879 c.510A>G synonymous_variant 0.96
rpoC 763894 c.525A>G synonymous_variant 0.96
rpoC 763900 c.531G>C synonymous_variant 0.96
rpoC 763903 c.534G>A synonymous_variant 0.96
rpoC 763912 c.543G>C synonymous_variant 0.97
rpoC 763933 c.564C>A synonymous_variant 1.0
rpoC 763945 c.576T>C synonymous_variant 1.0
rpoC 763960 c.591T>G synonymous_variant 1.0
rpoC 763963 c.594C>T synonymous_variant 1.0
rpoC 763972 c.603C>T synonymous_variant 1.0
rpoC 763987 c.618C>T synonymous_variant 1.0
rpoC 763991 p.Ile208Leu missense_variant 1.0
rpoC 764002 c.633C>T synonymous_variant 1.0
rpoC 764005 c.636G>C synonymous_variant 1.0
rpoC 764011 c.642T>C synonymous_variant 1.0
rpoC 764014 c.645G>A synonymous_variant 1.0
rpoC 764024 c.655_657delTTGinsCTC synonymous_variant 1.0
rpoC 764032 p.Asp221Glu missense_variant 1.0
rpoC 764040 p.Ser224Thr missense_variant 1.0
rpoC 764044 c.675T>G synonymous_variant 1.0
rpoC 764059 c.690G>C synonymous_variant 1.0
rpoC 764071 c.702G>C synonymous_variant 1.0
rpoC 764075 p.Val236Ile missense_variant 1.0
rpoC 764083 c.714A>G synonymous_variant 1.0
rpoC 764085 p.Asn239Ser missense_variant 1.0
rpoC 764087 p.Leu240Ile missense_variant 1.0
rpoC 764098 c.729A>G synonymous_variant 1.0
rpoC 764113 c.744C>T synonymous_variant 1.0
rpoC 764131 c.762T>C synonymous_variant 0.98
rpoC 764134 c.765C>G synonymous_variant 1.0
rpoC 764188 c.819A>G synonymous_variant 1.0
rpoC 764191 c.822C>G synonymous_variant 1.0
rpoC 764203 c.834G>C synonymous_variant 1.0
rpoC 764206 c.837T>C synonymous_variant 1.0
rpoC 764213 p.Arg282Lys missense_variant 1.0
rpoC 764227 c.858G>C synonymous_variant 1.0
rpoC 765493 c.2124G>C synonymous_variant 0.91
rpoC 765520 c.2151G>A synonymous_variant 0.93
rpoC 765529 c.2160C>G synonymous_variant 0.93
rpoC 765550 c.2181C>T synonymous_variant 0.94
rpoC 765553 c.2184C>T synonymous_variant 0.94
rpoC 765556 c.2187G>C synonymous_variant 0.94
rpoC 765559 c.2190G>C synonymous_variant 0.97
rpoC 765562 c.2193G>C synonymous_variant 0.97
rpoC 765565 c.2196G>C synonymous_variant 0.97
rpoC 765580 c.2211G>C synonymous_variant 0.97
rpoC 765611 p.His748Ala missense_variant 0.97
rpoC 765625 c.2256C>G synonymous_variant 0.97
rpoC 765628 c.2259G>C synonymous_variant 0.97
rpoC 765658 c.2289C>G synonymous_variant 1.0
rpoC 765661 c.2292T>G synonymous_variant 1.0
rpoC 765662 c.2293_2295delTTGinsCTC synonymous_variant 1.0
rpoC 765669 p.His767Arg missense_variant 1.0
rpoC 765681 p.Asn771Thr missense_variant 1.0
rpoC 765700 c.2331T>C synonymous_variant 1.0
rpoC 765712 c.2343C>G synonymous_variant 1.0
rpoC 765718 p.Asp783Glu missense_variant 1.0
rpoC 765728 p.Gln787Asn missense_variant 1.0
rpoC 765734 c.2365T>C synonymous_variant 1.0
rpoC 765751 c.2382C>G synonymous_variant 1.0
rpoC 765752 p.Asp795Ser missense_variant 1.0
rpoC 765772 c.2403C>G synonymous_variant 1.0
rpoC 765778 c.2409C>G synonymous_variant 1.0
rpoC 765781 p.Asp804Glu missense_variant 1.0
rpoC 765796 c.2427C>T synonymous_variant 1.0
rpoC 765811 c.2442T>C synonymous_variant 1.0
rpoC 765814 c.2445A>C synonymous_variant 1.0
rpoC 765817 c.2448G>C synonymous_variant 1.0
rpoC 765826 c.2457T>G synonymous_variant 1.0
rpoC 765835 c.2466C>T synonymous_variant 1.0
rpoC 765850 c.2481G>C synonymous_variant 1.0
rpoC 765875 p.Val836Ile missense_variant 1.0
rpoC 766456 c.3087C>G synonymous_variant 1.0
rpoC 766459 c.3090G>C synonymous_variant 1.0
rpoC 766486 c.3117A>G synonymous_variant 1.0
rpoC 766492 c.3123T>C synonymous_variant 1.0
rpoC 766517 p.Thr1050Ala missense_variant 1.0
rpoC 766522 c.3153C>G synonymous_variant 0.97
rpoC 766525 c.3156G>C synonymous_variant 0.97
rpoC 766526 p.Val1053Ile missense_variant 0.97
rpoC 766531 c.3162G>C synonymous_variant 1.0
rpoC 766534 c.3165C>G synonymous_variant 1.0
rpoC 766540 p.Asp1057Glu missense_variant 1.0
rpoC 766542 p.Gly1058Asp missense_variant 1.0
rpoC 766564 c.3195C>G synonymous_variant 1.0
rpoC 766568 p.Val1067Ile missense_variant 1.0
rpoC 766573 c.3204T>C synonymous_variant 1.0
rpoC 766591 c.3222A>G synonymous_variant 1.0
rpoC 766592 p.Val1075Leu missense_variant 1.0
rpoC 767059 c.3690T>C synonymous_variant 1.0
rpoC 767062 c.3693C>G synonymous_variant 1.0
mmpL5 777011 p.Lys490Thr missense_variant 1.0
mmpL5 777017 p.Asp488Leu missense_variant 1.0
mmpL5 777032 c.1449C>G synonymous_variant 1.0
mmpL5 777044 p.Ser479Gly missense_variant 1.0
mmpL5 777047 c.1434A>C synonymous_variant 1.0
mmpL5 777050 c.1431G>C synonymous_variant 1.0
mmpL5 777059 p.Ala474Gln missense_variant 1.0
mmpL5 777065 c.1416T>C synonymous_variant 1.0
mmpL5 777094 c.1387T>C synonymous_variant 1.0
mmpL5 777095 c.1386T>C synonymous_variant 1.0
mmpL5 777106 p.Ser459Pro missense_variant 1.0
mmpL5 777107 c.1374T>C synonymous_variant 1.0
mmpL5 777110 c.1371T>C synonymous_variant 1.0
rpsL 781832 c.273T>C synonymous_variant 1.0
rplC 801171 c.363A>G synonymous_variant 1.0
rplC 801183 c.375C>G synonymous_variant 1.0
rplC 801205 p.Arg133Ala missense_variant 1.0
rplC 801210 c.402T>A synonymous_variant 1.0
rplC 801222 c.414T>C synonymous_variant 1.0
rplC 801228 c.420T>C synonymous_variant 1.0
rplC 801229 p.Ala141Thr missense_variant 1.0
rplC 801246 c.438C>T synonymous_variant 1.0
rplC 801249 c.441T>C synonymous_variant 1.0
rplC 801252 c.444G>C synonymous_variant 1.0
rplC 801264 c.456C>T synonymous_variant 1.0
rplC 801267 c.459A>C synonymous_variant 1.0
rplC 801270 c.462T>C synonymous_variant 1.0
rplC 801276 c.468G>C synonymous_variant 1.0
rplC 801279 c.471G>C synonymous_variant 0.8
rplC 801312 c.504G>C synonymous_variant 1.0
rplC 801324 c.516T>C synonymous_variant 1.0
atpE 1461122 c.78C>T synonymous_variant 1.0
atpE 1461132 p.Val30Ile missense_variant 1.0
atpE 1461149 c.105T>G synonymous_variant 1.0
atpE 1461153 p.Ser37Ala missense_variant 1.0
atpE 1461159 p.Val39Ile missense_variant 1.0
atpE 1461164 c.120C>A synonymous_variant 1.0
atpE 1461167 c.123G>T synonymous_variant 1.0
atpE 1461170 c.126A>G synonymous_variant 1.0
atpE 1461179 c.135G>T synonymous_variant 1.0
atpE 1461182 c.138A>G synonymous_variant 1.0
atpE 1461185 c.141G>C synonymous_variant 1.0
atpE 1461197 c.153A>C synonymous_variant 1.0
atpE 1461212 c.168C>G synonymous_variant 1.0
atpE 1461224 c.180T>G synonymous_variant 1.0
atpE 1461230 c.186G>C synonymous_variant 1.0
atpE 1461233 c.189A>G synonymous_variant 1.0
atpE 1461254 c.210T>C synonymous_variant 1.0
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.8
rrl 1475612 n.1955G>C non_coding_transcript_exon_variant 0.8
rrl 1475621 n.1964T>C non_coding_transcript_exon_variant 0.8
rrl 1475629 n.1973dupA non_coding_transcript_exon_variant 0.8
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.8
inhA 1674507 c.306G>C synonymous_variant 1.0
inhA 1674514 p.Ile105Val missense_variant 1.0
inhA 1674534 c.333G>C synonymous_variant 1.0
inhA 1674542 p.Ala114Glu missense_variant 1.0
inhA 1674546 c.345T>C synonymous_variant 1.0
inhA 1674549 c.348G>C synonymous_variant 1.0
inhA 1674550 p.Ser117Ala missense_variant 1.0
inhA 1674570 c.369G>C synonymous_variant 1.0
inhA 1674573 c.372G>C synonymous_variant 1.0
inhA 1674576 c.375T>C synonymous_variant 0.97
inhA 1674582 c.381T>C synonymous_variant 0.97
inhA 1674585 c.384T>G synonymous_variant 0.97
inhA 1674589 p.Met130Leu missense_variant 0.97
inhA 1674601 p.Leu134Val missense_variant 0.97
inhA 1674624 c.423A>C synonymous_variant 0.97
inhA 1674630 c.429C>G synonymous_variant 0.97
inhA 1674636 c.435C>G synonymous_variant 0.97
inhA 1674656 p.Ser152Thr missense_variant 0.95
inhA 1674687 c.486G>C synonymous_variant 0.92
inhA 1674690 c.489C>G synonymous_variant 0.92
inhA 1674696 c.495G>A synonymous_variant 0.92
rpsA 1834102 c.561T>G synonymous_variant 1.0
rpsA 1834144 c.603G>A synonymous_variant 1.0
rpsA 1834150 c.609G>C synonymous_variant 1.0
rpsA 1834153 c.612T>C synonymous_variant 1.0
rpsA 1834154 p.Asn205His missense_variant 1.0
rpsA 1834157 c.616T>C synonymous_variant 1.0
rpsA 1834162 c.621A>G synonymous_variant 1.0
rpsA 1834165 c.624A>G synonymous_variant 1.0
rpsA 1834169 p.Thr210Ala missense_variant 1.0
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834189 c.648G>C synonymous_variant 1.0
rpsA 1834222 c.681T>C synonymous_variant 1.0
rpsA 1834231 c.690T>G synonymous_variant 1.0
rpsA 1834240 c.699T>C synonymous_variant 1.0
rpsA 1834249 c.708T>C synonymous_variant 1.0
rpsA 1834261 c.720A>G synonymous_variant 1.0
rpsA 1834264 c.723G>C synonymous_variant 1.0
rpsA 1834288 c.747C>G synonymous_variant 1.0
rpsA 1834294 c.753G>C synonymous_variant 0.93
rpsA 1834298 p.Gln253Ala missense_variant 0.93
rpsA 1834303 c.762T>C synonymous_variant 0.93
rpsA 1834306 c.765T>C synonymous_variant 0.93
rpsA 1834336 c.795C>G synonymous_variant 0.93
kasA 2518528 c.414C>G synonymous_variant 1.0
kasA 2518540 c.426T>G synonymous_variant 1.0
kasA 2518561 c.447T>C synonymous_variant 1.0
kasA 2518573 c.459G>C synonymous_variant 1.0
kasA 2518574 p.Ile154Ala missense_variant 1.0
kasA 2518579 c.465T>G synonymous_variant 1.0
kasA 2518585 c.471G>A synonymous_variant 1.0
kasA 2518588 c.474T>C synonymous_variant 1.0
kasA 2518591 c.477G>C synonymous_variant 1.0
kasA 2518606 c.492G>C synonymous_variant 1.0
kasA 2518609 p.Met165Ile missense_variant 1.0
kasA 2518612 c.498C>A synonymous_variant 1.0
kasA 2518630 c.516G>C synonymous_variant 1.0
kasA 2518636 c.522C>T synonymous_variant 1.0
kasA 2518639 c.525G>C synonymous_variant 1.0
kasA 2518642 c.528A>G synonymous_variant 1.0
kasA 2518663 c.549T>C synonymous_variant 1.0
kasA 2518672 c.558G>C synonymous_variant 1.0
kasA 2518678 c.564C>T synonymous_variant 1.0
kasA 2518684 c.570C>G synonymous_variant 1.0
kasA 2518825 c.711T>C synonymous_variant 1.0
kasA 2518843 c.729T>C synonymous_variant 1.0
kasA 2518847 p.Leu245Met missense_variant 1.0
kasA 2518853 p.Leu247Ile missense_variant 1.0
kasA 2518864 c.750G>C synonymous_variant 1.0
kasA 2518879 c.765A>G synonymous_variant 1.0
kasA 2518885 c.771T>C synonymous_variant 1.0
kasA 2518898 c.784T>C synonymous_variant 1.0
kasA 2518903 c.789C>T synonymous_variant 1.0
kasA 2518906 c.792A>G synonymous_variant 1.0
kasA 2518910 p.Leu266Met missense_variant 1.0
kasA 2518921 c.807T>A synonymous_variant 1.0
Rv2752c 3065894 p.Ile100Leu missense_variant 1.0
Rv2752c 3065901 c.291A>T synonymous_variant 1.0
Rv2752c 3065907 c.285G>A synonymous_variant 1.0
Rv2752c 3065919 c.273G>C synonymous_variant 1.0
Rv2752c 3065922 c.270T>C synonymous_variant 1.0
Rv2752c 3065940 c.252G>A synonymous_variant 1.0
Rv2752c 3065946 p.Gly82Ala missense_variant 1.0
Rv2752c 3065979 p.Leu71Val missense_variant 1.0
Rv2752c 3065982 c.210G>C synonymous_variant 1.0
Rv2752c 3065988 c.204A>G synonymous_variant 1.0
Rv2752c 3065993 p.Val67Ile missense_variant 1.0
Rv2752c 3065994 c.198T>C synonymous_variant 1.0
Rv2752c 3066002 p.Met64Leu missense_variant 1.0
Rv2752c 3066017 c.175C>T synonymous_variant 1.0
Rv2752c 3066021 c.171C>G synonymous_variant 1.0
Rv2752c 3066024 c.168T>C synonymous_variant 1.0
Rv2752c 3066027 c.165C>G synonymous_variant 1.0
Rv2752c 3066039 c.153C>T synonymous_variant 1.0
rpoA 3877545 c.963G>C synonymous_variant 1.0
rpoA 3877557 c.951C>G synonymous_variant 1.0
rpoA 3877569 p.Pro313Ala missense_variant 1.0
rpoA 3877587 p.Ser307Ala missense_variant 1.0
rpoA 3877613 p.Ile299Val missense_variant 1.0
rpoA 3877656 c.852T>C synonymous_variant 1.0
rpoA 3877668 c.840A>G synonymous_variant 1.0
rpoA 3877677 c.831G>C synonymous_variant 1.0
rpoA 3877680 c.828G>C synonymous_variant 1.0
rpoA 3877685 c.823C>T synonymous_variant 1.0
rpoA 3877686 c.822A>G synonymous_variant 1.0
rpoA 3877689 c.819C>G synonymous_variant 1.0
rpoA 3877692 c.816G>C synonymous_variant 1.0
rpoA 3877704 c.804G>C synonymous_variant 1.0
rpoA 3877707 c.801G>A synonymous_variant 1.0
rpoA 3877710 c.798C>T synonymous_variant 1.0
rpoA 3877731 c.777G>C synonymous_variant 1.0
rpoA 3877737 c.771G>C synonymous_variant 1.0
rpoA 3877743 c.765T>C synonymous_variant 1.0
rpoA 3877764 c.744C>G synonymous_variant 1.0
rpoA 3877770 c.738A>G synonymous_variant 1.0
rpoA 3877776 c.732T>C synonymous_variant 1.0
rpoA 3877782 c.726T>C synonymous_variant 1.0
clpC1 4038698 c.2007C>G synonymous_variant 0.94
clpC1 4038704 c.2001T>C synonymous_variant 0.94
clpC1 4038710 c.1995G>C synonymous_variant 0.94
clpC1 4038713 c.1992T>C synonymous_variant 0.97
clpC1 4038721 c.1984C>T synonymous_variant 0.98
clpC1 4038740 c.1965G>C synonymous_variant 0.98
clpC1 4038770 c.1935C>T synonymous_variant 1.0
clpC1 4038773 c.1932T>C synonymous_variant 1.0
clpC1 4038782 c.1923G>C synonymous_variant 1.0
clpC1 4038812 c.1893T>C synonymous_variant 1.0
clpC1 4038878 c.1827A>G synonymous_variant 1.0
clpC1 4038905 c.1800A>C synonymous_variant 1.0
clpC1 4038908 c.1797C>G synonymous_variant 1.0
clpC1 4038911 c.1794G>C synonymous_variant 1.0
clpC1 4038914 c.1791G>C synonymous_variant 1.0
clpC1 4038923 c.1782A>G synonymous_variant 1.0
clpC1 4038932 c.1773G>C synonymous_variant 1.0
clpC1 4038953 c.1752A>G synonymous_variant 1.0
clpC1 4038956 c.1749T>C synonymous_variant 1.0
clpC1 4038965 c.1740T>C synonymous_variant 1.0
clpC1 4038971 c.1734T>C synonymous_variant 1.0
clpC1 4038974 c.1731T>C synonymous_variant 1.0
clpC1 4038989 c.1716T>C synonymous_variant 1.0
clpC1 4038997 c.1708T>C synonymous_variant 1.0
clpC1 4039001 p.Asn568Glu missense_variant 1.0
clpC1 4039004 c.1701C>G synonymous_variant 1.0
clpC1 4039007 c.1698G>C synonymous_variant 1.0
clpC1 4039022 c.1683A>G synonymous_variant 1.0
clpC1 4039031 c.1674T>C synonymous_variant 1.0
clpC1 4039037 c.1668T>G synonymous_variant 1.0
clpC1 4039046 c.1659C>T synonymous_variant 1.0
clpC1 4039064 c.1641C>G synonymous_variant 1.0
clpC1 4039073 c.1632C>G synonymous_variant 1.0
clpC1 4039076 c.1629G>A synonymous_variant 1.0
clpC1 4039079 c.1626C>G synonymous_variant 1.0
clpC1 4039085 c.1620A>G synonymous_variant 1.0
clpC1 4039097 c.1608G>C synonymous_variant 1.0
clpC1 4039112 c.1593C>G synonymous_variant 1.0
clpC1 4039121 c.1584T>G synonymous_variant 1.0
clpC1 4039124 c.1581C>G synonymous_variant 1.0
clpC1 4039127 p.Lys526Asn missense_variant 0.98
clpC1 4039133 c.1572C>G synonymous_variant 1.0
clpC1 4039139 p.Glu522Asp missense_variant 1.0
clpC1 4039145 c.1560G>C synonymous_variant 1.0
clpC1 4039169 p.Glu512Asp missense_variant 1.0
clpC1 4039199 c.1506C>G synonymous_variant 1.0
clpC1 4039226 c.1479T>G synonymous_variant 1.0
clpC1 4039274 c.1431G>C synonymous_variant 1.0
clpC1 4039286 c.1419T>C synonymous_variant 1.0
clpC1 4039292 c.1413C>G synonymous_variant 1.0
clpC1 4039295 c.1410A>C synonymous_variant 1.0
clpC1 4039304 c.1401G>A synonymous_variant 1.0
clpC1 4039320 p.Ala462Ser missense_variant 1.0
clpC1 4039322 c.1383T>C synonymous_variant 1.0
clpC1 4039328 c.1377A>C synonymous_variant 1.0
clpC1 4039338 p.Thr456Gln missense_variant 1.0
clpC1 4039347 p.Arg453Gln missense_variant 1.0
clpC1 4039352 c.1353C>T synonymous_variant 1.0
clpC1 4039391 c.1314T>G synonymous_variant 1.0
clpC1 4039409 c.1296T>C synonymous_variant 1.0
clpC1 4039412 p.Ala431Val missense_variant 1.0
clpC1 4039415 p.Glu430Asp missense_variant 1.0
clpC1 4039430 c.1275T>C synonymous_variant 0.95
clpC1 4039442 c.1263A>G synonymous_variant 1.0
clpC1 4039448 c.1257A>G synonymous_variant 1.0
clpC1 4039454 c.1251A>G synonymous_variant 1.0
clpC1 4039463 c.1242C>G synonymous_variant 1.0
clpC1 4039466 c.1239T>C synonymous_variant 1.0
clpC1 4039469 c.1236T>C synonymous_variant 1.0
clpC1 4040393 c.312G>C synonymous_variant 0.92
clpC1 4040411 c.294T>C synonymous_variant 1.0
clpC1 4040423 c.282A>G synonymous_variant 1.0
clpC1 4040426 c.279T>C synonymous_variant 1.0
clpC1 4040431 c.274T>C synonymous_variant 1.0
clpC1 4040441 c.262_264delCTCinsTTG synonymous_variant 1.0
clpC1 4040444 c.261C>G synonymous_variant 1.0
clpC1 4040450 c.255A>G synonymous_variant 1.0
clpC1 4040459 c.246C>G synonymous_variant 1.0
clpC1 4040465 c.240T>C synonymous_variant 0.96
clpC1 4040471 c.234T>C synonymous_variant 0.96
clpC1 4040480 c.225T>C synonymous_variant 0.96
clpC1 4040486 c.219G>A synonymous_variant 0.96
clpC1 4040522 c.183T>C synonymous_variant 0.89
clpC1 4040531 c.174T>G synonymous_variant 0.92
clpC1 4040534 c.171A>G synonymous_variant 0.92
clpC1 4040540 c.165G>C synonymous_variant 0.91
clpC1 4040551 c.154T>C synonymous_variant 0.89
clpC1 4040561 c.144A>G synonymous_variant 0.87
embC 4241039 p.Asp393Asn missense_variant 1.0
embC 4241047 c.1185C>G synonymous_variant 1.0
embC 4241050 c.1188T>G synonymous_variant 1.0
embC 4241053 c.1191G>C synonymous_variant 1.0
embC 4241059 c.1197G>A synonymous_variant 1.0
embC 4241083 c.1221G>T synonymous_variant 1.0
embC 4241084 c.1222C>T synonymous_variant 1.0
embC 4241107 c.1245G>C synonymous_variant 1.0
embC 4241140 c.1278A>G synonymous_variant 1.0
embC 4241141 p.Ile427Val missense_variant 1.0
embC 4241158 c.1296T>C synonymous_variant 1.0
embC 4241161 c.1299C>G synonymous_variant 1.0
embC 4241162 c.1300T>C synonymous_variant 1.0
embC 4241185 c.1323G>C synonymous_variant 1.0
embC 4241188 c.1326C>G synonymous_variant 1.0
embC 4241189 p.Ile443Val missense_variant 1.0
embC 4241203 c.1341T>G synonymous_variant 1.0
embC 4241215 c.1353C>G synonymous_variant 1.0
embB 4248118 c.1605T>G synonymous_variant 0.9
embB 4248121 c.1608G>A synonymous_variant 0.91
embB 4248133 c.1620C>G synonymous_variant 0.94
embB 4248139 c.1626C>G synonymous_variant 0.95
embB 4248142 c.1629T>C synonymous_variant 0.95
embB 4248157 c.1644A>G synonymous_variant 0.96
embB 4248173 p.Val554Met missense_variant 0.97
embB 4248179 p.Ile556Leu missense_variant 0.97
embB 4248185 c.1672T>C synonymous_variant 0.97
embB 4248194 p.Lys561Gly missense_variant 0.97
embB 4248199 c.1686A>G synonymous_variant 0.97
embB 4248200 p.Ile563Val missense_variant 0.97
embB 4248206 p.Ser565Gly missense_variant 0.97
embB 4248214 c.1701C>G synonymous_variant 0.98
embB 4248220 c.1707A>G synonymous_variant 0.98
embB 4248232 c.1719G>A synonymous_variant 0.98
embB 4248256 c.1743C>G synonymous_variant 1.0
embB 4248277 c.1764G>C synonymous_variant 1.0
embB 4248304 c.1791G>C synonymous_variant 1.0
embB 4248316 c.1803C>G synonymous_variant 1.0
embB 4248319 c.1806A>G synonymous_variant 1.0
embB 4248322 c.1809G>T synonymous_variant 1.0
embB 4248334 c.1821C>G synonymous_variant 0.96
embB 4248337 c.1824G>A synonymous_variant 0.96
embB 4248341 p.Thr610Ala missense_variant 0.96
embB 4248355 c.1842A>C synonymous_variant 0.94
embB 4248358 c.1845C>G synonymous_variant 0.92
embB 4248360 p.Pro616Arg missense_variant 0.92
embB 4248375 p.Trp621Ser missense_variant 0.92
embB 4248377 p.Ser622Ala missense_variant 0.91