lineage | Count |
---|---|
lineage4.9 | 21 |
75 | |
lineage2.2.1 | 10 |
lineage4 | 16 |
lineage4.1.2.1 | 12 |
lineage1.1 | 1 |
lineage4.3.4.2.1 | 2 |
La2 | 1 |
lineage3.1 | 2 |
lineage4.3.4.1 | 1 |
lineage4.4.2 | 2 |
lineage4.1.1.3 | 2 |
La1.8.1 | 5 |
lineage6.1.1 | 2 |
lineage3 | 6 |
lineage4;lineage3.1 | 1 |
La1 | 2 |
lineage3.1.2 | 1 |
lineage2.2 | 3 |
lineage4.3.3 | 4 |
lineage4.3.2 | 1 |
lineage4.1.2.1.1 | 1 |
lineage4.6.2.2 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage2.2.1.2 | 2 |
lineage4.4.1.1 | 2 |
lineage4.5 | 1 |
lineage1.2.1.2.1 | 1 |
lineage7;lineage2.2.1.2 | 1 |
La1.7.1 | 1 |
lineage3.1.3 | 1 |
lineage4.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.8 | 4 |
lineage4;lineage2 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage1.1.1 | 1 |
spoligotype | Count |
---|---|
None | 191 |
ID | Drug resistance | Lineage | Country iso2 | ERR2660539 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6046133 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | SRR6045053 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6045233 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6045399 | Other | None | SRR6046253 | HR-TB | lineage4.9 | None | ERR4830353 | Other | None | SRR6325442 | HR-TB | None | ERR278594 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046492 | Other | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6325447 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR323036 | HR-TB | None | ERR4831117 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR323037 | HR-TB | lineage4 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | ERR502524 | HR-TB | La2 | None | ERR294248 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502532 | HR-TB | None | SRR8217918 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323041 | HR-TB | None | ERR323038 | HR-TB | None | ERR11465152 | Sensitive | lineage4.3.4.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323039 | HR-TB | None | ERR323043 | HR-TB | None | ERR323055 | HR-TB | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | ERR323053 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR3445501 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797046 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797060 | Other | La1.8.1 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3797083 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR4188247 | HR-TB | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR400529 | Other | lineage3 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4187734 | Other | La1.8.1 | None | ERR4596902 | HR-TB | lineage3 | None | ERR4188350 | HR-TB | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4769482 | Sensitive | La1 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4798262 | HR-TB | La1 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR4811493 | HR-TB | None | ERR702406 | HR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358837 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR736835 | HR-TB | None | ERR736865 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR8976043 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR987722 | HR-TB | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172310 | HR-TB | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1174897 | HR-TB | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13837519 | Sensitive | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861564 | Sensitive | lineage4.9 | None | SRR13861573 | Other | lineage4.9 | None | SRR17832802 | HR-TB | lineage3 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR26399239 | Sensitive | lineage4.9 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR3675488 | HR-TB | None | ERR4813861 | Other | lineage4.3.3 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675558 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675222 | Other | None | ERR181824 | HR-TB | lineage4 | None | SRR3675501 | HR-TB | None | SRR3675383 | HR-TB | None | ERR176740 | HR-TB | None | ERR4816969 | Other | lineage4.8 | None | ERR4816151 | Other | lineage4.8 | None | SRR3675486 | HR-TB | None | ERR4814582 | HR-TB | lineage3 | None | ERR1750907 | RR-TB | None | SRR3675270 | HR-TB | None | SRR3675545 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816466 | HR-TB | None | ERR212123 | Other | None | ERR212138 | HR-TB | lineage4 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4817667 | HR-TB | lineage4.8 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4818561 | HR-TB | lineage4 | None | SRR5341470 | HR-TB | None | ERR4819546 | HR-TB | lineage3 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR4819314 | Other | lineage1.1.1 | None | SRR5341330 | HR-TB | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | SRR5535933 | HR-TB | None |
---|