ERR323055
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3797046
|
HR-TB
|
lineage4.9
|
None
|
SRR3675494
|
RR-TB
|
lineage4.9
|
None
|
ERR3799304
|
Other
|
lineage6.1.1
|
None
|
ERR5311102
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311096
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR5311090
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3077978
|
RR-TB
|
lineage1.1
|
None
|
SRR6046485
|
Other
|
lineage4.9
|
None
|
ERR4798262
|
HR-TB
|
La1.2.BCG
|
None
|
ERR323038
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4814536
|
MDR-TB
|
M.canetti;lineage2.1;lineage3
|
None
|
SRR11662690
|
HR-TB
|
lineage4.9
|
None
|
SRR28351488
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR987722
|
MDR-TB
|
|
None
|
SRR6325442
|
HR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
ERR473314
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR124652
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR126600
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR9786601
|
Other
|
lineage4.1.2.1
|
None
|
ERR323047
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3445502
|
Sensitive
|
lineage4.9;lineage7
|
None
|
ERR736865
|
HR-TB
|
lineage4.3.2;lineage4.9
|
None
|
SRR6045555
|
Other
|
lineage4.9
|
None
|
SRR11462861
|
Other
|
La1.8.1
|
None
|
SRR6046878
|
Other
|
lineage4.9
|
None
|
ERR323060
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311098
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR6358837
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR038268
|
HR-TB
|
La3;M.canetti;lineage4.8;lineage4.9
|
None
|
ERR926155
|
Sensitive
|
lineage4.9
|
None
|
ERR926157
|
Sensitive
|
lineage4.9
|
None
|
SRR1175052
|
HR-TB
|
lineage4.9
|
None
|
SRR29055611
|
Sensitive
|
lineage4.9
|
None
|
SRR26399239
|
Sensitive
|
lineage4.9
|
None
|
SRR28351584
|
HR-TB
|
lineage2.2.1
|
None
|
ERR3797029
|
Other
|
lineage4.9
|
None
|
ERR3468607
|
Other
|
lineage4.9
|
None
|
SRR3675322
|
HR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
ERR9787014
|
Other
|
lineage6.1.1
|
None
|
ERR2026698
|
HR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
ERR323063
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR2514327
|
HR-TB
|
lineage4.8
|
None
|
ERR2693239
|
RR-TB
|
M.canetti;lineage2.1;lineage4
|
None
|
ERR294248
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR5311081
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5162090
|
RR-TB
|
lineage4.9
|
None
|
ERR3797083
|
RR-TB
|
lineage4.9
|
None
|
SRR1792478
|
HR-TB
|
La1.7.1
|
None
|
ERR473277
|
HR-TB
|
La3;M.canetti;lineage4.9
|
None
|
SRR20969708
|
HR-TB
|
lineage2.2
|
None
|
ERR5311101
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675492
|
Other
|
La1.7;lineage4.9
|
None
|
ERR323036
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR124642
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
ERR2026697
|
HR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
SRR1166821
|
Other
|
lineage4.1.2.1
|
None
|
SRR6046492
|
Other
|
lineage4.9
|
None
|
ERR4816551
|
HR-TB
|
lineage4.1.1.3
|
None
|
ERR1873396
|
Pre-XDR-TB
|
M.canetti;lineage2.2
|
None
|
SRR6045347
|
Other
|
lineage4.9
|
None
|
SRR7240033
|
Other
|
La1.2;La1.8.1
|
None
|
ERR405219
|
HR-TB
|
La1.7;lineage3.1;lineage4
|
None
|
SRR16156188
|
Sensitive
|
lineage4.9
|
None
|
SRR22424787
|
Sensitive
|
lineage4.9
|
None
|
SRR3675464
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3;lineage8
|
None
|
SRR6325444
|
MDR-TB
|
M.canetti;lineage2.1;lineage6.3
|
None
|
ERR4816466
|
HR-TB
|
lineage4.9
|
None
|
ERR760733
|
MDR-TB
|
lineage4.1.2.1.1
|
None
|
ERR4188350
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR8217918
|
HR-TB
|
lineage4.9
|
None
|
SRR3675518
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR3675450
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR1172796
|
Sensitive
|
lineage2.2.1.2
|
None
|
ERR4831117
|
HR-TB
|
lineage4.9;lineage7
|
None
|
SRR3675488
|
Other
|
La1.7;lineage4.9
|
None
|
ERR502532
|
Other
|
M.canetti;lineage2.1;lineage6.3
|
None
|
SRR29050859
|
Other
|
lineage4.9
|
None
|
SRR6044835
|
Other
|
lineage4.9
|
None
|
SAMN02414850
|
Other
|
lineage4.1.2.1
|
None
|
ERR4799513
|
HR-TB
|
lineage2.2
|
None
|
SRR1510066
|
RR-TB
|
lineage1.2.1.2.1
|
None
|
ERR9786645
|
Other
|
lineage4.6.2.2
|
None
|
ERR5908228
|
RR-TB
|
lineage4.3.3
|
None
|
SRR6045887
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR4813861
|
Other
|
lineage4.3.3
|
None
|
SRR3675320
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9
|
None
|
ERR323033
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR1873393
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR323054
|
MDR-TB
|
La3;M.canetti;lineage3.1
|
None
|
ERR323041
|
HR-TB
|
M.canetti;lineage2.1
|
None
|
ERR3804155
|
Other
|
lineage4.1.2.1
|
None
|
ERR386953
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1165584
|
Other
|
lineage4.1.2.1
|
None
|
ERR9119096
|
RR-TB
|
lineage4.3.3
|
None
|
ERR11252558
|
Other
|
lineage4.6.3;lineage4.9
|
None
|
SRR3675554
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1162864
|
Other
|
lineage4.1.2.1
|
None
|
SRR6044815
|
Other
|
lineage4.9
|
None
|
ERR3283055
|
HR-TB
|
lineage4.9
|
None
|
ERR926156
|
Sensitive
|
lineage4.9
|
None
|
SRR1180226
|
HR-TB
|
lineage4.9
|
None
|
ERR2513229
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR736835
|
HR-TB
|
La1.7;M.canetti;lineage4.9
|
None
|
SRR7240492
|
HR-TB
|
La1.7.1
|
None
|
ERR9786604
|
Other
|
|
None
|
SRR3675558
|
HR-TB
|
M.canetti;lineage4.1.1.3;lineage6.3;lineage8
|
None
|
SRR17832802
|
HR-TB
|
lineage3
|
None
|
SRR3675568
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8
|
None
|
SRR3675444
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR323044
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
SRR6045952
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR176658
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR18549032
|
HR-TB
|
lineage2.2.1.2;lineage7
|
None
|
SRR3675508
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR2693229
|
RR-TB
|
La3;M.canetti;lineage4.9
|
None
|
SRR6046611
|
Sensitive
|
lineage4.9
|
None
|
SRR1172310
|
HR-TB
|
lineage4.9
|
None
|
SRR3675507
|
Other
|
lineage4.9
|
None
|
ERR323058
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR2693242
|
RR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR12142339
|
HR-TB
|
lineage2.2.1
|
None
|
ERR5311083
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR772255
|
MDR-TB
|
lineage2.1;lineage4.3.2
|
None
|
SRR5535933
|
Other
|
lineage4.9
|
None
|
ERR124651
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
SRR3675501
|
Other
|
La1.7;lineage4.9
|
None
|
ERR4188247
|
HR-TB
|
lineage4.9
|
None
|
ERR4821053
|
RR-TB
|
lineage3
|
None
|
SRR6045053
|
Other
|
lineage4
|
None
|
ERR5311100
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR323039
|
HR-TB
|
La2;lineage4.9
|
None
|
ERR3797028
|
HR-TB
|
M.canetti;lineage4.9
|
None
|
SRR1162740
|
Other
|
lineage4.1.2.1
|
None
|
SRR6045548
|
Sensitive
|
lineage4.9
|
None
|
ERR126608
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6325445
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR11466146
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR926160
|
Sensitive
|
lineage4.9
|
None
|
SRR3675486
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR1174897
|
MDR-TB
|
lineage4.9;lineage9
|
None
|
ERR4818561
|
Sensitive
|
lineage4.9
|
None
|
SRR6046133
|
HR-TB
|
lineage4.9
|
None
|
SRR6046593
|
Other
|
lineage4.9
|
None
|
ERR5311078
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4817692
|
HR-TB
|
lineage1.1.2;lineage4
|
None
|
ERR4799478
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11465152
|
Sensitive
|
lineage4.3.4.1
|
None
|
ERR4769450
|
Other
|
lineage4.9
|
None
|
ERR4798648
|
MDR-TB
|
lineage3.1.2.2
|
None
|
ERR9119138
|
RR-TB
|
M.canetti;lineage4.3.1;lineage4.9
|
None
|
ERR161037
|
Other
|
lineage4.9
|
None
|
ERR5311082
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
SRR3675481
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4814639
|
HR-TB
|
lineage4.9
|
None
|
ERR1063862
|
HR-TB
|
lineage4.9
|
None
|
SRR6044942
|
HR-TB
|
lineage4.9
|
None
|
SRR5709967
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3675561
|
Other
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR278594
|
HR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR2229143
|
RR-TB
|
lineage4.9
|
None
|
ERR3283021
|
HR-TB
|
lineage4.9
|
None
|
ERR323037
|
Other
|
lineage4.9
|
None
|
ERR13285191
|
Sensitive
|
lineage4.9
|
None
|
SRR13861528
|
HR-TB
|
lineage4.9
|
None
|
SRR6045290
|
RR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR126618
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6045948
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR133825
|
HR-TB
|
La1;lineage4.9
|
None
|
SRR13861397
|
HR-TB
|
lineage4.9
|
None
|
ERR4819546
|
HR-TB
|
lineage3
|
None
|
ERR2026696
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3
|
None
|
ERR176766
|
HR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR3797047
|
MDR-TB
|
lineage4.9
|
None
|
ERR3445501
|
HR-TB
|
La1.7.1;La1.7.X-unk4;lineage7
|
None
|
ERR323043
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR4769452
|
Other
|
lineage4.9
|
None
|
ERR3283017
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9
|
None
|
SRR1183111
|
HR-TB
|
lineage4.9
|
None
|
ERR8976043
|
HR-TB
|
lineage2.1;lineage2.2;lineage6.3
|
None
|
ERR4816151
|
Sensitive
|
lineage4.8
|
None
|
ERR736831
|
Other
|
lineage4.9
|
None
|
ERR4811493
|
HR-TB
|
lineage4.9
|
None
|
SRR20970016
|
Other
|
lineage2.2
|
None
|
ERR9786642
|
Other
|
lineage4.1.2.1
|
None
|
SRR6046196
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
SRR6325448
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR181824
|
HR-TB
|
lineage4.9
|
None
|
ERR9786671
|
Other
|
|
None
|
SRR3675487
|
Other
|
M.canetti;lineage4.9
|
None
|
SRR18913742
|
Sensitive
|
lineage3.1.3
|
None
|
ERR926165
|
Sensitive
|
lineage4.9
|
None
|
SRR3675243
|
Other
|
lineage4.9
|
None
|
SRR1640750
|
Other
|
|
None
|
SRR3675545
|
Other
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR13285192
|
Sensitive
|
lineage4.9
|
None
|
ERR3275196
|
Other
|
lineage2.2.1
|
nl
|
SRR6045795
|
Sensitive
|
lineage2.2.1
|
None
|
ERR502524
|
HR-TB
|
lineage4.9;lineage6.3
|
None
|
ERR3797016
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675505
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR1063858
|
HR-TB
|
lineage4.9
|
None
|
SRR18289200
|
Other
|
lineage4.9
|
None
|
SRR29096410
|
Other
|
lineage4.9
|
None
|
ERR3797023
|
HR-TB
|
La1.8.1
|
None
|
ERR4798823
|
HR-TB
|
lineage4
|
None
|
ERR4819314
|
Other
|
lineage1.1.1
|
None
|
ERR4188342
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4769444
|
HR-TB
|
lineage4.9
|
None
|
SRR1165506
|
Other
|
lineage4.1.2.1
|
None
|
ERR1035239
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR987729
|
HR-TB
|
lineage3.1.2.1;lineage3.1.2.2
|
None
|
SRR3675385
|
Other
|
La1.7;lineage4.9
|
None
|
SRR3675270
|
Other
|
lineage4.9
|
None
|
SRR1175127
|
Other
|
lineage2.2.1.2
|
None
|
SRR6046514
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675506
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR323034
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage3.1
|
None
|
ERR2026695
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3
|
None
|
SRR6046046
|
Other
|
lineage4.9
|
None
|
ERR4817667
|
HR-TB
|
lineage4.8
|
None
|
ERR2693228
|
RR-TB
|
lineage4.9
|
None
|
SRR20969731
|
Other
|
lineage2.2.1
|
None
|
ERR926162
|
Sensitive
|
lineage4.9
|
None
|
SRR3675269
|
RR-TB
|
lineage4.9
|
None
|
ERR323040
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR067712
|
Sensitive
|
lineage4.9
|
None
|
ERR4830353
|
Other
|
La1.7
|
None
|
SRR3675267
|
Other
|
La1.7;lineage4.9
|
None
|
SRR5341330
|
Other
|
lineage4.9
|
None
|
ERR3468544
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR6046783
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR323064
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6045219
|
HR-TB
|
lineage4.9
|
None
|
ERR161033
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4769474
|
HR-TB
|
lineage4.9
|
None
|
ERR067699
|
Sensitive
|
La1;lineage2;lineage4.9
|
None
|
ERR5917710
|
Other
|
lineage4.1.2.1
|
None
|
SRR5341470
|
MDR-TB
|
lineage4.9;lineage9
|
None
|
ERR3283016
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3797036
|
HR-TB
|
lineage2.1;lineage4.1.4;lineage4.9
|
None
|
SRR6325447
|
MDR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
SRR20969542
|
Other
|
lineage4.4.2
|
None
|
SRR6458421
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096150
|
Other
|
lineage4.9
|
None
|
ERR926163
|
Other
|
lineage4.9
|
None
|
SRR6045399
|
Other
|
M.canetti;lineage4.9
|
None
|
ERR1023295
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.2.1
|
None
|
ERR323053
|
MDR-TB
|
La2;lineage4.9;lineage9
|
None
|
DRR188519
|
Other
|
lineage4.4.2
|
None
|
SRR3675515
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311089
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR926159
|
Sensitive
|
lineage4.9
|
None
|
ERR11466044
|
Other
|
lineage4.1.1.3
|
None
|
ERR4596902
|
MDR-TB
|
lineage3
|
None
|
SRR1172885
|
HR-TB
|
lineage4.9
|
None
|
ERR3797073
|
Other
|
La1.8.1
|
None
|
SRR13423544
|
Other
|
lineage4.5
|
None
|
ERR971389
|
Sensitive
|
lineage4.9
|
None
|
ERR702406
|
Other
|
lineage2.1
|
None
|
ERR5311099
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR926164
|
Other
|
lineage4.9
|
None
|
ERR1063849
|
HR-TB
|
lineage4.9
|
None
|