TB-Profiler result

Run: ERR2513229
Summary

Run ID: ERR2513229

Sample name:

Date: 31-03-2023 19:32:28

Number of reads: 507029

Percentage reads mapped: 44.52

Strain: lineage2.2.1

Drug-resistance: MDR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 0.98
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 1.0
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761155 p.Ser450Leu missense_variant 0.47 rifampicin
rpoC 764841 p.Ile491Thr missense_variant 0.54 rifampicin
rpsL 781687 p.Lys43Arg missense_variant 0.88 streptomycin
fabG1 1673432 c.-8T>C upstream_gene_variant 1.0 isoniazid, ethionamide
katG 2155168 p.Ser315Thr missense_variant 1.0 isoniazid
katG 2155694 p.Ser140Gly missense_variant 0.46 isoniazid
pncA 2288697 p.Leu182Ser missense_variant 0.18 pyrazinamide
pncA 2289040 p.Trp68Gly missense_variant 1.0 pyrazinamide
embB 4247431 p.Met306Ile missense_variant 1.0 ethambutol
ethA 4326087 c.1386delA frameshift_variant 1.0 ethionamide, ethionamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5440 c.201A>G synonymous_variant 0.18
gyrB 5727 p.Pro163Leu missense_variant 0.2
gyrA 6700 c.-602T>C upstream_gene_variant 0.16
gyrA 6703 c.-599G>C upstream_gene_variant 0.17
gyrA 6709 c.-593A>G upstream_gene_variant 0.17
gyrA 6712 c.-590G>C upstream_gene_variant 0.15
gyrA 6715 c.-587C>G upstream_gene_variant 0.15
gyrA 6724 c.-578G>C upstream_gene_variant 0.15
gyrA 6730 c.-572A>G upstream_gene_variant 0.14
gyrA 6745 c.-557T>G upstream_gene_variant 0.14
gyrB 6749 p.Ala504Ser missense_variant 0.15
gyrA 6760 c.-542G>C upstream_gene_variant 0.15
gyrB 6764 p.Leu509Phe missense_variant 0.15
gyrA 6769 c.-533C>T upstream_gene_variant 0.14
gyrA 6775 c.-527G>A upstream_gene_variant 0.14
gyrA 6793 c.-509T>C upstream_gene_variant 0.14
gyrB 6798 p.Gly520Ala missense_variant 0.15
gyrA 6803 c.-499C>T upstream_gene_variant 0.15
gyrA 7334 c.33G>A synonymous_variant 0.13
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7812 p.Pro171Thr missense_variant 0.17
gyrA 8783 c.1482G>C synonymous_variant 0.17
gyrA 8786 c.1485T>C synonymous_variant 0.19
gyrA 8792 c.1491G>C synonymous_variant 0.19
gyrA 8807 p.Asp502Glu missense_variant 0.19
gyrA 8810 c.1509A>C synonymous_variant 0.19
gyrA 8816 c.1515C>G synonymous_variant 0.19
gyrA 8818 p.Ser506Asn missense_variant 0.19
gyrA 8829 c.1528_1530delTTGinsCTC synonymous_variant 0.19
gyrA 8837 c.1536C>G synonymous_variant 0.23
gyrA 8849 c.1548C>G synonymous_variant 0.23
gyrA 8852 c.1551T>C synonymous_variant 0.23
gyrA 8858 c.1557T>G synonymous_variant 0.24
gyrA 8867 c.1566A>G synonymous_variant 0.21
gyrA 8870 c.1569G>C synonymous_variant 0.21
gyrA 8873 c.1572A>C synonymous_variant 0.2
gyrA 8897 c.1596T>C synonymous_variant 0.25
gyrA 8900 c.1599G>C synonymous_variant 0.25
gyrA 8903 c.1602T>C synonymous_variant 0.25
gyrA 8915 c.1614A>G synonymous_variant 0.3
gyrA 8930 c.1629C>T synonymous_variant 0.22
gyrA 8939 c.1638T>C synonymous_variant 0.21
gyrA 8942 c.1641G>C synonymous_variant 0.21
gyrA 8945 c.1644G>T synonymous_variant 0.21
gyrA 8946 c.1645T>C synonymous_variant 0.24
gyrA 8969 c.1668G>C synonymous_variant 0.21
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575907 p.Ala187Val missense_variant 1.0
ccsA 620040 c.150G>C synonymous_variant 0.14
ccsA 620182 p.Arg98Cys missense_variant 0.17
ccsA 620200 p.Arg104Trp missense_variant 0.18
ccsA 620625 p.Ile245Met missense_variant 1.0
rpoB 760157 c.351A>G synonymous_variant 0.18
rpoB 760172 c.366G>C synonymous_variant 0.21
rpoB 760176 p.Ala124Ser missense_variant 0.26
rpoB 760181 c.375T>G synonymous_variant 0.26
rpoB 760184 c.378A>G synonymous_variant 0.3
rpoB 760223 c.417T>C synonymous_variant 0.27
rpoB 760233 c.427_429delAGTinsTCG synonymous_variant 0.25
rpoB 760244 c.438G>C synonymous_variant 0.26
rpoB 760253 c.447T>C synonymous_variant 0.23
rpoB 760256 p.Asp150Glu missense_variant 0.23
rpoB 760274 p.Glu156Asp missense_variant 0.3
rpoB 760282 p.Thr159Ser missense_variant 0.32
rpoB 760298 c.492G>C synonymous_variant 0.27
rpoB 760307 c.501T>C synonymous_variant 0.23
rpoB 760310 c.504G>C synonymous_variant 0.21
rpoB 760313 c.507G>C synonymous_variant 0.19
rpoB 760325 c.519G>C synonymous_variant 0.22
rpoB 760328 c.522G>C synonymous_variant 0.23
rpoB 760330 c.525_526delGT frameshift_variant 0.23
rpoB 760340 c.534_535insC frameshift_variant 0.23
rpoB 760343 c.537G>C synonymous_variant 0.29
rpoB 760361 c.555T>C synonymous_variant 0.33
rpoB 760368 p.Ser188Ala missense_variant 0.35
rpoB 760376 p.Asp190Glu missense_variant 0.32
rpoB 760382 c.576G>C synonymous_variant 0.33
rpoB 760389 p.Ser195Ala missense_variant 0.35
rpoB 760415 c.609C>T synonymous_variant 0.39
rpoB 760430 c.624T>C synonymous_variant 0.3
rpoB 760434 p.Val210Ile missense_variant 0.3
rpoB 760460 c.654G>C synonymous_variant 0.4
rpoB 760475 c.669A>G synonymous_variant 0.44
rpoB 760481 c.675G>C synonymous_variant 0.4
rpoB 760484 c.678A>G synonymous_variant 0.38
rpoB 760502 c.696C>G synonymous_variant 0.41
rpoB 760503 p.Lys233Gln missense_variant 0.41
rpoB 760515 p.Trp237Val missense_variant 0.39
rpoB 760521 p.Ser239Arg missense_variant 0.4
rpoB 760527 p.Gln241Glu missense_variant 0.4
rpoB 760532 c.726T>C synonymous_variant 0.35
rpoB 760534 p.Val243Ala missense_variant 0.35
rpoB 760547 c.741G>C synonymous_variant 0.33
rpoB 760563 p.Arg253Met missense_variant 0.27
rpoB 760571 c.765G>C synonymous_variant 0.25
rpoB 760584 p.Asn260His missense_variant 0.19
rpoB 760925 c.1119T>C synonymous_variant 0.17
rpoB 760928 c.1122G>C synonymous_variant 0.16
rpoB 760934 c.1128C>G synonymous_variant 0.16
rpoB 760946 c.1140A>G synonymous_variant 0.16
rpoB 760959 p.Val385Leu missense_variant 0.16
rpoB 760964 c.1158C>T synonymous_variant 0.17
rpoB 760965 p.Met387Leu missense_variant 0.17
rpoB 760973 c.1167G>T synonymous_variant 0.38
rpoB 760982 c.1176G>C synonymous_variant 0.43
rpoB 760985 c.1179G>C synonymous_variant 0.43
rpoB 760991 c.1185G>T synonymous_variant 0.44
rpoB 761014 p.Val403Ala missense_variant 0.48
rpoB 761027 c.1221A>C synonymous_variant 0.52
rpoB 761036 c.1230G>C synonymous_variant 0.45
rpoB 761037 c.1231T>C synonymous_variant 0.44
rpoB 761051 c.1245G>T synonymous_variant 0.36
rpoB 761054 c.1248G>C synonymous_variant 0.36
rpoB 761057 c.1251G>C synonymous_variant 0.36
rpoB 761060 c.1254C>G synonymous_variant 0.37
rpoB 761063 c.1257C>G synonymous_variant 0.37
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.43
rpoB 761102 c.1296A>G synonymous_variant 0.43
rpoB 761132 c.1326G>T synonymous_variant 0.44
rpoB 761133 c.1327T>C synonymous_variant 0.42
rpoB 761150 c.1344A>C synonymous_variant 0.52
rpoB 761165 c.1359G>C synonymous_variant 0.52
rpoB 761168 c.1362C>G synonymous_variant 0.52
rpoB 761178 c.1372_1374delTCAinsAGT synonymous_variant 0.52
rpoB 761189 c.1383T>C synonymous_variant 0.59
rpoB 761195 c.1389G>C synonymous_variant 0.59
rpoB 761198 c.1392G>C synonymous_variant 0.59
rpoB 761204 c.1398C>G synonymous_variant 0.61
rpoB 761234 c.1428G>C synonymous_variant 0.62
rpoB 761243 c.1437G>C synonymous_variant 0.6
rpoB 761249 c.1443A>G synonymous_variant 0.6
rpoB 761255 c.1449T>G synonymous_variant 0.57
rpoB 761258 c.1452G>A synonymous_variant 0.54
rpoB 761261 c.1455G>C synonymous_variant 0.47
rpoB 761264 c.1458C>G synonymous_variant 0.44
rpoB 761273 c.1467T>C synonymous_variant 0.44
rpoB 761282 c.1476C>T synonymous_variant 0.4
rpoB 761288 c.1482G>C synonymous_variant 0.31
rpoB 761300 c.1494G>A synonymous_variant 0.17
rpoB 761537 c.1731C>G synonymous_variant 0.22
rpoB 761555 c.1749G>C synonymous_variant 0.25
rpoB 761558 c.1752C>G synonymous_variant 0.25
rpoB 761570 c.1764T>C synonymous_variant 0.27
rpoB 761573 c.1767C>G synonymous_variant 0.27
rpoB 761579 c.1773G>C synonymous_variant 0.27
rpoB 761600 c.1794T>C synonymous_variant 0.29
rpoB 761603 c.1797C>G synonymous_variant 0.31
rpoB 761606 c.1800C>G synonymous_variant 0.31
rpoB 761612 c.1806G>C synonymous_variant 0.36
rpoB 761615 c.1809A>C synonymous_variant 0.38
rpoB 761627 c.1821C>T synonymous_variant 0.36
rpoB 761633 c.1827G>C synonymous_variant 0.38
rpoB 761649 c.1843_1844delAGinsTC synonymous_variant 0.5
rpoB 761655 p.Ala617Ser missense_variant 0.5
rpoB 761666 c.1860G>C synonymous_variant 0.5
rpoB 761675 c.1869G>C synonymous_variant 0.4
rpoB 761948 c.2142G>C synonymous_variant 0.22
rpoB 761954 c.2148C>G synonymous_variant 0.22
rpoB 762000 c.2194_2195delTCinsAG synonymous_variant 0.33
rpoB 762003 p.Asn733Gln missense_variant 0.35
rpoB 762008 c.2202C>G synonymous_variant 0.32
rpoB 762011 c.2205G>C synonymous_variant 0.3
rpoB 762014 c.2208C>G synonymous_variant 0.3
rpoB 762017 c.2211A>G synonymous_variant 0.3
rpoB 762024 p.Val740Thr missense_variant 0.3
rpoB 762051 p.His749Tyr missense_variant 0.42
rpoB 762065 c.2259T>C synonymous_variant 0.5
rpoB 762083 c.2277T>C synonymous_variant 0.4
rpoB 762086 c.2280G>C synonymous_variant 0.4
rpoB 762101 c.2295C>G synonymous_variant 0.47
rpoB 762114 p.Ile770Val missense_variant 0.48
rpoB 762137 c.2331C>T synonymous_variant 0.57
rpoB 762140 c.2334G>C synonymous_variant 0.57
rpoB 762143 c.2337T>C synonymous_variant 0.54
rpoB 762149 c.2343G>C synonymous_variant 0.54
rpoB 762158 c.2352G>C synonymous_variant 0.65
rpoB 762167 c.2361T>C synonymous_variant 0.62
rpoB 762176 c.2370T>C synonymous_variant 0.61
rpoB 762185 c.2379G>C synonymous_variant 0.58
rpoB 762209 c.2403C>G synonymous_variant 0.55
rpoB 762218 c.2412T>C synonymous_variant 0.53
rpoB 762233 c.2427G>C synonymous_variant 0.44
rpoB 762251 c.2445G>C synonymous_variant 0.2
rpoB 762254 c.2448T>C synonymous_variant 0.2
rpoB 762257 c.2451C>G synonymous_variant 0.18
rpoB 762275 c.2469C>G synonymous_variant 0.17
rpoB 762858 p.Thr1018Ser missense_variant 0.2
rpoC 762863 c.-507T>C upstream_gene_variant 0.28
rpoB 762881 p.Met1025Ile missense_variant 0.42
rpoC 762899 c.-471G>C upstream_gene_variant 0.48
rpoC 762917 c.-453C>G upstream_gene_variant 0.48
rpoC 762920 c.-450C>T upstream_gene_variant 0.5
rpoC 762923 c.-447C>G upstream_gene_variant 0.52
rpoC 762929 c.-441G>A upstream_gene_variant 0.52
rpoC 762959 c.-411G>C upstream_gene_variant 0.53
rpoC 762971 c.-399G>C upstream_gene_variant 0.53
rpoC 762980 c.-390T>C upstream_gene_variant 0.52
rpoC 762989 c.-381G>T upstream_gene_variant 0.54
rpoC 762995 c.-375G>T upstream_gene_variant 0.55
rpoC 763031 c.-339T>G upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.64
rpoC 763040 c.-330C>G upstream_gene_variant 0.67
rpoC 763050 c.-320C>T upstream_gene_variant 0.66
rpoC 763067 c.-303C>G upstream_gene_variant 0.67
rpoC 763070 c.-300T>C upstream_gene_variant 0.66
rpoB 763074 p.Thr1090Val missense_variant 0.65
rpoC 763085 c.-285C>T upstream_gene_variant 0.63
rpoC 763088 c.-282C>G upstream_gene_variant 0.63
rpoC 763094 c.-276G>C upstream_gene_variant 0.63
rpoC 763115 c.-255T>C upstream_gene_variant 0.68
rpoC 763139 c.-231C>T upstream_gene_variant 0.77
rpoC 763148 c.-222G>C upstream_gene_variant 0.78
rpoC 763160 c.-210G>A upstream_gene_variant 0.85
rpoC 763166 c.-204A>G upstream_gene_variant 0.8
rpoC 763169 c.-201A>G upstream_gene_variant 0.89
rpoC 763172 c.-198G>C upstream_gene_variant 0.88
rpoC 763181 c.-189G>C upstream_gene_variant 0.6
rpoC 763187 c.-183C>G upstream_gene_variant 0.6
rpoC 763193 c.-177C>G upstream_gene_variant 0.5
rpoC 763444 c.75T>C synonymous_variant 0.13
rpoC 763456 c.87A>G synonymous_variant 0.33
rpoC 763465 c.96G>A synonymous_variant 0.4
rpoC 763468 c.99G>C synonymous_variant 0.4
rpoC 763486 c.117T>G synonymous_variant 0.4
rpoC 763528 c.159G>A synonymous_variant 0.65
rpoC 763546 c.177A>G synonymous_variant 0.56
rpoC 763570 c.201G>C synonymous_variant 0.68
rpoC 763606 c.237C>T synonymous_variant 0.58
rpoC 763619 p.Arg84Lys missense_variant 0.55
rpoC 763633 c.264T>C synonymous_variant 0.5
rpoC 763642 c.273G>C synonymous_variant 0.55
rpoC 763660 c.291T>C synonymous_variant 0.33
rpoC 763666 c.297G>T synonymous_variant 0.31
rpoC 763669 c.300C>G synonymous_variant 0.31
rpoC 763687 c.318C>T synonymous_variant 0.17
rpoC 763754 p.Ile129Val missense_variant 0.15
rpoC 764098 c.729A>G synonymous_variant 0.17
rpoC 764103 p.Val245Glu missense_variant 0.17
rpoC 764112 p.Tyr248Phe missense_variant 0.17
rpoC 764131 c.762T>C synonymous_variant 0.14
rpoC 764143 c.774G>C synonymous_variant 0.17
rpoC 764147 p.Ser260Ala missense_variant 0.17
rpoC 764153 p.Gln262Lys missense_variant 0.17
rpoC 764156 p.Lys263Arg missense_variant 0.15
rpoC 764168 p.Asn267Asp missense_variant 0.15
rpoC 764188 c.819A>G synonymous_variant 0.15
rpoC 764208 p.Val280Ala missense_variant 0.13
rpoC 764217 p.Asn283Thr missense_variant 0.13
rpoC 764227 c.858G>C synonymous_variant 0.14
rpoC 764320 c.951C>G synonymous_variant 0.2
rpoC 764344 c.975C>T synonymous_variant 0.2
rpoC 764353 c.984G>T synonymous_variant 0.2
rpoC 764380 c.1011G>C synonymous_variant 0.21
rpoC 764383 c.1014C>G synonymous_variant 0.21
rpoC 764387 c.1018T>C synonymous_variant 0.21
rpoC 764405 c.1036A>C synonymous_variant 0.18
rpoC 764428 c.1059G>C synonymous_variant 0.14
rpoC 764431 c.1062G>C synonymous_variant 0.15
rpoC 764434 c.1065A>G synonymous_variant 0.15
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 0.15
rpoC 764458 c.1089G>C synonymous_variant 0.26
rpoC 764461 c.1092A>G synonymous_variant 0.24
rpoC 764497 c.1128A>G synonymous_variant 0.26
rpoC 764500 c.1131C>G synonymous_variant 0.26
rpoC 764521 c.1152T>C synonymous_variant 0.5
rpoC 764527 c.1158C>T synonymous_variant 0.53
rpoC 764536 c.1167G>T synonymous_variant 0.56
rpoC 764539 c.1170C>G synonymous_variant 0.56
rpoC 764544 p.Thr392Asn missense_variant 0.61
rpoC 764548 c.1179G>A synonymous_variant 0.61
rpoC 764566 c.1197C>G synonymous_variant 0.75
rpoC 764575 c.1206T>G synonymous_variant 0.75
rpoC 764576 c.1207_1208delTCinsAG synonymous_variant 0.75
rpoC 764611 c.1242G>C synonymous_variant 0.64
rpoC 764632 c.1263T>C synonymous_variant 0.62
rpoC 764650 c.1281G>C synonymous_variant 0.62
rpoC 764662 c.1293G>C synonymous_variant 0.63
rpoC 764701 c.1332C>G synonymous_variant 0.46
rpoC 764746 c.1377G>T synonymous_variant 0.49
rpoC 764752 c.1383G>C synonymous_variant 0.48
rpoC 764758 c.1389C>G synonymous_variant 0.49
rpoC 764763 p.His465Leu missense_variant 0.49
rpoC 764780 c.1411_1413delAGCinsTCG synonymous_variant 0.48
rpoC 764797 c.1428G>C synonymous_variant 0.43
rpoC 764803 c.1434C>T synonymous_variant 0.43
rpoC 764812 c.1443C>G synonymous_variant 0.38
rpoC 764815 c.1446A>G synonymous_variant 0.37
rpoC 764824 c.1455T>C synonymous_variant 0.37
rpoC 764827 c.1458G>C synonymous_variant 0.38
rpoC 764830 c.1461C>G synonymous_variant 0.42
rpoC 764857 c.1488G>T synonymous_variant 0.42
rpoC 764858 c.1489T>C synonymous_variant 0.44
rpoC 764869 c.1500C>T synonymous_variant 0.35
rpoC 764872 c.1503A>G synonymous_variant 0.35
rpoC 764875 c.1506C>G synonymous_variant 0.34
rpoC 764878 c.1509C>G synonymous_variant 0.3
rpoC 764887 c.1518G>C synonymous_variant 0.29
rpoC 764888 c.1519T>C synonymous_variant 0.29
rpoC 764893 c.1524T>C synonymous_variant 0.29
rpoC 764911 c.1542A>G synonymous_variant 0.3
rpoC 764912 p.Met515Gln missense_variant 0.3
rpoC 764923 c.1554A>G synonymous_variant 0.19
rpoC 764962 c.1593G>C synonymous_variant 0.2
rpoC 764968 c.1599T>C synonymous_variant 0.2
rpoC 764983 c.1614T>C synonymous_variant 0.18
rpoC 765079 c.1710T>G synonymous_variant 0.19
rpoC 765082 c.1713G>C synonymous_variant 0.19
rpoC 765089 c.1720_1722delTTGinsCTC synonymous_variant 0.2
rpoC 765103 c.1734G>T synonymous_variant 0.2
rpoC 765143 p.Val592Ile missense_variant 0.13
rpoC 765382 c.2013G>T synonymous_variant 0.27
rpoC 765383 p.Met672Leu missense_variant 0.25
rpoC 765405 p.Leu679Pro missense_variant 0.38
rpoC 765408 p.Gly680Asp missense_variant 0.38
rpoC 765412 c.2043T>C synonymous_variant 0.38
rpoC 765425 p.Lys686Glu missense_variant 0.42
rpoC 765435 p.His689Pro missense_variant 0.5
rpoC 765443 p.Val692Arg missense_variant 0.27
rpoC 765453 p.Ala695Val missense_variant 0.25
rpoC 765466 c.2097C>T synonymous_variant 0.27
rpoC 765493 c.2124G>C synonymous_variant 0.38
rpoC 765499 c.2130C>G synonymous_variant 0.38
rpoC 765508 c.2139C>G synonymous_variant 0.38
rpoC 765525 p.Ala719Val missense_variant 0.2
rpoC 765541 c.2172C>G synonymous_variant 0.2
rpoC 765547 c.2178C>T synonymous_variant 0.2
rpoC 765548 c.2179_2181delAGCinsTCG synonymous_variant 0.2
rpoC 765556 c.2187G>C synonymous_variant 0.18
rpoC 765559 c.2190G>C synonymous_variant 0.18
rpoC 765563 p.Ser732Ala missense_variant 0.18
rpoC 765569 p.Ala734Ser missense_variant 0.18
rpoC 765590 p.Arg741Ala missense_variant 0.17
rpoC 765596 p.Lys743Ala missense_variant 0.17
rpoC 765612 p.His748Arg missense_variant 0.17
rpoC 765826 c.2457T>C synonymous_variant 0.2
rpoC 765835 c.2466C>T synonymous_variant 0.25
rpoC 765856 c.2487T>C synonymous_variant 0.24
rpoC 765875 p.Val836Ile missense_variant 0.22
rpoC 765886 c.2517C>G synonymous_variant 0.29
rpoC 765892 c.2523T>C synonymous_variant 0.3
rpoC 765904 c.2535C>G synonymous_variant 0.33
rpoC 765908 p.Leu847Ala missense_variant 0.33
rpoC 765928 c.2559C>G synonymous_variant 0.43
rpoC 765937 c.2568T>C synonymous_variant 0.4
rpoC 765940 c.2571A>C synonymous_variant 0.4
rpoC 765946 c.2577C>T synonymous_variant 0.4
rpoC 765947 c.2578T>C synonymous_variant 0.4
rpoC 765952 c.2583G>C synonymous_variant 0.4
rpoC 765958 c.2589C>G synonymous_variant 0.27
rpoC 765962 c.2593T>C synonymous_variant 0.27
rpoC 765979 c.2610C>G synonymous_variant 0.18
rpoC 765982 c.2613C>T synonymous_variant 0.18
rpoC 765994 c.2625A>T synonymous_variant 0.17
rpoC 766010 c.2641_2642delTCinsAG synonymous_variant 0.17
rpoC 766333 c.2964G>C synonymous_variant 0.22
rpoC 766348 c.2979A>G synonymous_variant 0.33
rpoC 766361 p.Val998Ile missense_variant 0.3
rpoC 766366 c.2997C>G synonymous_variant 0.3
rpoC 766369 c.3000C>G synonymous_variant 0.3
rpoC 766375 c.3006C>G synonymous_variant 0.33
rpoC 766381 c.3012C>T synonymous_variant 0.36
rpoC 766384 c.3015A>G synonymous_variant 0.36
rpoC 766432 c.3063T>C synonymous_variant 0.14
rpoC 766435 p.Glu1022Asp missense_variant 0.14
rpoC 766990 c.3621G>C synonymous_variant 0.29
rpoC 766996 c.3627C>T synonymous_variant 0.45
rpoC 767002 c.3633G>C synonymous_variant 0.54
rpoC 767008 c.3639G>C synonymous_variant 0.5
rpoC 767059 c.3690T>G synonymous_variant 0.38
rpoC 767062 c.3693C>T synonymous_variant 0.38
rpoC 767065 c.3696G>C synonymous_variant 0.42
rpoC 767074 c.3705T>C synonymous_variant 0.42
rpoC 767080 c.3711G>C synonymous_variant 0.38
rpoC 767087 p.Cys1240Ser missense_variant 0.42
rpoC 767098 c.3729T>C synonymous_variant 0.36
rpoC 767103 c.3735_3738delCAAC frameshift_variant 0.33
rpoC 767110 c.3741_3742insGGGC frameshift_variant 0.31
rpoC 767119 c.3750A>G synonymous_variant 0.31
rpoC 767134 c.3765C>T synonymous_variant 0.33
rpoC 767140 c.3771G>C synonymous_variant 0.36
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776182 p.Asp767Asn missense_variant 1.0
mmpS5 779615 c.-710C>G upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781655 c.96T>C synonymous_variant 0.21
rpsL 781658 c.99A>G synonymous_variant 0.21
rpsL 781679 c.120C>G synonymous_variant 0.18
rpsL 781682 c.123T>C synonymous_variant 0.18
rpsL 781751 c.192G>C synonymous_variant 0.17
rpsL 781754 c.195G>C synonymous_variant 0.14
rpsL 781760 c.201T>C synonymous_variant 0.14
rpsL 781763 c.204C>G synonymous_variant 0.16
rpsL 781772 c.213C>T synonymous_variant 0.2
rpsL 781802 c.243G>C synonymous_variant 0.2
rpsL 781814 c.255C>T synonymous_variant 0.22
rpsL 781817 c.258G>T synonymous_variant 0.22
rpsL 781829 c.270G>C synonymous_variant 0.21
rpsL 781832 c.273T>C synonymous_variant 0.21
rpsL 781838 c.279G>C synonymous_variant 0.19
rpsL 781841 c.282C>T synonymous_variant 0.18
rpsL 781845 p.Lys96Arg missense_variant 0.18
rpsL 781859 c.300T>C synonymous_variant 0.2
rpsL 781865 c.306G>C synonymous_variant 0.17
rpsL 781868 c.309T>C synonymous_variant 0.16
rpsL 781871 c.312G>C synonymous_variant 0.16
rpsL 781884 p.Asn109Asp missense_variant 0.14
rplC 800618 c.-191T>C upstream_gene_variant 0.14
rplC 800633 c.-176T>C upstream_gene_variant 0.22
rplC 800645 c.-164C>T upstream_gene_variant 0.31
rplC 800648 c.-161A>G upstream_gene_variant 0.3
rplC 800654 c.-155T>C upstream_gene_variant 0.28
rplC 800667 c.-142_-140delTCGinsAGC upstream_gene_variant 0.24
rplC 800672 c.-137G>C upstream_gene_variant 0.24
rplC 800675 c.-134G>A upstream_gene_variant 0.24
rplC 800693 c.-116A>G upstream_gene_variant 0.2
rplC 800702 c.-107G>A upstream_gene_variant 0.17
rplC 800703 c.-106_-104delTTGinsCTC upstream_gene_variant 0.18
rplC 800715 c.-94A>C upstream_gene_variant 0.17
rplC 800720 c.-89T>C upstream_gene_variant 0.17
rplC 800723 c.-86C>G upstream_gene_variant 0.17
rplC 800735 c.-74C>G upstream_gene_variant 0.19
rplC 800738 c.-71T>C upstream_gene_variant 0.19
rplC 800747 c.-62C>G upstream_gene_variant 0.17
rplC 800762 c.-47T>C upstream_gene_variant 0.17
fbiC 1302968 p.Pro13Leu missense_variant 0.19
fbiC 1303938 c.1008C>T synonymous_variant 0.14
fbiC 1303947 c.1017T>G synonymous_variant 0.14
fbiC 1303973 p.Gly348Ala missense_variant 0.13
fbiC 1303981 p.Val351Ile missense_variant 0.24
fbiC 1303998 c.1068T>C synonymous_variant 0.27
fbiC 1304004 c.1074A>G synonymous_variant 0.27
fbiC 1304562 c.1632G>C synonymous_variant 0.24
fbiC 1304567 p.Phe546Tyr missense_variant 0.24
fbiC 1304574 c.1644C>G synonymous_variant 0.21
fbiC 1304580 c.1650T>G synonymous_variant 0.19
fbiC 1304613 c.1683T>C synonymous_variant 0.2
fbiC 1304619 c.1689G>A synonymous_variant 0.21
fbiC 1304628 c.1698G>C synonymous_variant 0.23
fbiC 1304640 c.1710A>C synonymous_variant 0.21
Rv1258c 1406760 c.580_581insC frameshift_variant 1.0
Rv1258c 1407324 p.Arg6His missense_variant 0.17
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.35
rrs 1471929 n.84C>G non_coding_transcript_exon_variant 0.34
rrs 1471930 n.85G>C non_coding_transcript_exon_variant 0.34
rrs 1471931 n.86G>T non_coding_transcript_exon_variant 0.34
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 0.34
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.33
rrs 1471978 n.133C>T non_coding_transcript_exon_variant 0.66
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 0.66
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.66
rrs 1471996 n.151C>T non_coding_transcript_exon_variant 0.71
rrs 1472017 n.172C>T non_coding_transcript_exon_variant 0.7
rrs 1472023 n.178G>T non_coding_transcript_exon_variant 0.69
rrs 1472028 n.183A>G non_coding_transcript_exon_variant 0.32
rrs 1472030 n.185G>T non_coding_transcript_exon_variant 0.71
rrs 1472032 n.187G>A non_coding_transcript_exon_variant 0.7
rrs 1472033 n.188A>T non_coding_transcript_exon_variant 0.7
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 0.7
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.7
rrs 1472041 n.196C>T non_coding_transcript_exon_variant 0.7
rrs 1472043 n.198T>G non_coding_transcript_exon_variant 0.67
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.7
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.75
rrs 1472070 n.225G>A non_coding_transcript_exon_variant 0.77
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.77
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.84
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.83
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.85
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.88
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.88
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.96
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.87
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 0.82
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.82
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.82
rrs 1472291 n.446G>T non_coding_transcript_exon_variant 0.18
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 1.0
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 1.0
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.5
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.5
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.6
rrs 1472497 n.652G>A non_coding_transcript_exon_variant 0.6
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.8
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 1.0
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 1.0
rrs 1472675 n.830T>C non_coding_transcript_exon_variant 1.0
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 1.0
rrs 1472680 n.835C>T non_coding_transcript_exon_variant 1.0
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 1.0
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 1.0
rrs 1472686 n.841G>A non_coding_transcript_exon_variant 1.0
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 1.0
rrs 1472690 n.845C>T non_coding_transcript_exon_variant 1.0
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 1.0
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.67
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.6
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.6
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.64
rrs 1472960 n.1115G>A non_coding_transcript_exon_variant 0.64
rrs 1472986 n.1141C>T non_coding_transcript_exon_variant 0.77
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.77
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.77
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.77
rrs 1473081 n.1236C>G non_coding_transcript_exon_variant 0.88
rrs 1473082 n.1237G>C non_coding_transcript_exon_variant 0.88
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.85
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.88
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.88
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.88
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.88
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.87
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.87
rrs 1473129 n.1284C>G non_coding_transcript_exon_variant 0.88
rrs 1473130 n.1285G>T non_coding_transcript_exon_variant 0.87
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.86
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.8
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.75
rrs 1473294 n.1449A>G non_coding_transcript_exon_variant 0.67
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.62
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.29
rrl 1474202 n.545T>G non_coding_transcript_exon_variant 0.29
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.29
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.33
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.6
rrl 1474495 n.838G>C non_coding_transcript_exon_variant 0.75
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.6
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.6
rrl 1474498 n.841G>A non_coding_transcript_exon_variant 0.6
rrl 1474505 n.848C>T non_coding_transcript_exon_variant 0.6
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.6
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.6
rrl 1474508 n.851C>G non_coding_transcript_exon_variant 0.6
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.5
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.5
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.5
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.5
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.5
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.5
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.5
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.5
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.5
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.5
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.5
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.5
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.5
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 0.6
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 0.4
rrl 1474717 n.1060_1061insGTGAG non_coding_transcript_exon_variant 0.4
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.75
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.75
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.75
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.8
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.67
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.67
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.67
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.67
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.67
rrl 1474825 n.1168G>A non_coding_transcript_exon_variant 0.67
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.67
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.67
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.67
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 1.0
rrl 1475443 n.1786G>T non_coding_transcript_exon_variant 0.75
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.78
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.78
rrl 1475475 n.1818C>T non_coding_transcript_exon_variant 0.78
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.78
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.78
rrl 1475481 n.1824C>G non_coding_transcript_exon_variant 0.78
rrl 1475482 n.1825A>G non_coding_transcript_exon_variant 0.78
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.78
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.8
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.8
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.75
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.75
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.67
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.67
rrl 1475571 n.1914A>T non_coding_transcript_exon_variant 0.8
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.5
rrl 1475707 n.2050T>G non_coding_transcript_exon_variant 0.75
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.8
rrl 1475759 n.2102C>T non_coding_transcript_exon_variant 0.8
rrl 1475760 n.2104_2107delCGCA non_coding_transcript_exon_variant 1.0
rrl 1475766 n.2109G>T non_coding_transcript_exon_variant 1.0
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 1.0
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.85
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.73
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 1.0
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 1.0
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 1.0
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 1.0
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 1.0
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 1.0
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 1.0
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 1.0
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 1.0
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 1.0
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 1.0
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 1.0
rrl 1476088 n.2431A>T non_coding_transcript_exon_variant 0.96
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.96
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.96
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.96
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.96
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 1.0
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 1.0
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 1.0
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.23
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.96
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.93
rrl 1476251 n.2594T>G non_coding_transcript_exon_variant 0.93
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.92
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.92
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.9
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.89
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.89
rrl 1476300 n.2643G>A non_coding_transcript_exon_variant 0.89
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.83
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.83
rrl 1476524 n.2867_2868insT non_coding_transcript_exon_variant 0.88
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.86
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.86
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.86
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.86
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.83
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.83
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.77
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.81
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.81
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.75
rrl 1476665 n.3008T>G non_coding_transcript_exon_variant 0.75
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 0.71
rrl 1476675 n.3018C>G non_coding_transcript_exon_variant 0.68
rrl 1476690 n.3033_3034insCA non_coding_transcript_exon_variant 0.5
rrl 1476699 n.3042A>G non_coding_transcript_exon_variant 0.36
rpsA 1833583 c.42C>T synonymous_variant 0.14
rpsA 1833589 c.48A>C synonymous_variant 0.14
rpsA 1833595 c.54T>G synonymous_variant 0.14
rpsA 1833596 p.Ser19Ala missense_variant 0.14
rpsA 1833607 c.66T>C synonymous_variant 0.15
rpsA 1833673 c.132C>G synonymous_variant 0.3
rpsA 1833676 c.135A>G synonymous_variant 0.3
rpsA 1833679 c.138G>C synonymous_variant 0.31
rpsA 1833682 c.141C>T synonymous_variant 0.33
rpsA 1833685 c.144G>C synonymous_variant 0.33
rpsA 1833694 c.153G>T synonymous_variant 0.33
rpsA 1833697 c.156C>G synonymous_variant 0.33
rpsA 1833700 c.159C>T synonymous_variant 0.33
rpsA 1833721 c.180A>G synonymous_variant 0.33
rpsA 1833727 c.186G>C synonymous_variant 0.28
rpsA 1833734 p.Ala65Ser missense_variant 0.29
rpsA 1833739 c.198C>T synonymous_variant 0.28
rpsA 1833742 c.201A>G synonymous_variant 0.28
rpsA 1833748 c.207C>G synonymous_variant 0.25
rpsA 1833760 c.219C>T synonymous_variant 0.25
rpsA 1833769 c.228C>G synonymous_variant 0.25
rpsA 1833771 p.Asn77Ser missense_variant 0.25
rpsA 1833775 c.234G>A synonymous_variant 0.27
rpsA 1833781 c.240T>C synonymous_variant 0.23
rpsA 1833782 p.Ser81Glu missense_variant 0.23
rpsA 1833790 c.249T>C synonymous_variant 0.29
rpsA 1833811 c.270G>T synonymous_variant 0.13
rpsA 1833829 c.288A>G synonymous_variant 0.27
rpsA 1833832 c.291G>A synonymous_variant 0.29
rpsA 1833838 c.297G>C synonymous_variant 0.28
rpsA 1833844 c.303C>T synonymous_variant 0.28
rpsA 1833847 c.306C>G synonymous_variant 0.28
rpsA 1833850 c.309C>G synonymous_variant 0.28
rpsA 1833856 c.315A>G synonymous_variant 0.32
rpsA 1833862 c.321G>T synonymous_variant 0.35
rpsA 1833874 c.333T>G synonymous_variant 0.5
rpsA 1833894 p.Ala118Glu missense_variant 0.65
rpsA 1833905 p.Lys122Arg missense_variant 0.62
rpsA 1833928 c.387G>C synonymous_variant 0.59
rpsA 1833949 c.408T>C synonymous_variant 0.45
rpsA 1833961 c.420C>G synonymous_variant 0.42
rpsA 1833970 c.429G>C synonymous_variant 0.38
rpsA 1833979 c.438T>C synonymous_variant 0.32
rpsA 1833985 c.444G>C synonymous_variant 0.32
rpsA 1833988 c.447C>G synonymous_variant 0.33
rpsA 1833991 c.450C>T synonymous_variant 0.36
rpsA 1834009 c.468C>T synonymous_variant 0.4
rpsA 1834012 c.471G>C synonymous_variant 0.39
rpsA 1834015 c.474G>C synonymous_variant 0.38
rpsA 1834030 c.489C>G synonymous_variant 0.36
rpsA 1834046 p.Ile169Val missense_variant 0.35
rpsA 1834069 c.528G>C synonymous_variant 0.3
rpsA 1834093 c.552G>C synonymous_variant 0.23
rpsA 1834099 c.558C>G synonymous_variant 0.21
rpsA 1834102 c.561T>C synonymous_variant 0.21
rpsA 1834105 c.564C>T synonymous_variant 0.21
rpsA 1834108 c.567C>G synonymous_variant 0.21
rpsA 1834114 c.573G>C synonymous_variant 0.18
rpsA 1834123 c.582C>G synonymous_variant 0.2
rpsA 1834135 c.594G>C synonymous_variant 0.18
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834249 c.708T>C synonymous_variant 0.18
rpsA 1834255 c.714C>G synonymous_variant 0.24
rpsA 1834261 c.720A>G synonymous_variant 0.22
rpsA 1834264 c.723G>C synonymous_variant 0.24
rpsA 1834285 c.744G>C synonymous_variant 0.27
rpsA 1834294 c.753G>C synonymous_variant 0.29
rpsA 1834303 c.762T>G synonymous_variant 0.29
rpsA 1834306 c.765T>C synonymous_variant 0.3
rpsA 1834348 c.807T>C synonymous_variant 0.48
rpsA 1834354 c.813G>C synonymous_variant 0.46
rpsA 1834357 c.816T>C synonymous_variant 0.46
rpsA 1834361 c.820_822delTTGinsCTC synonymous_variant 0.48
rpsA 1834366 c.825A>G synonymous_variant 0.55
rpsA 1834396 c.855G>C synonymous_variant 0.5
rpsA 1834399 p.His286Gln missense_variant 0.52
rpsA 1834411 c.870T>C synonymous_variant 0.48
rpsA 1834423 c.882G>C synonymous_variant 0.39
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.4
rpsA 1834456 c.915T>G synonymous_variant 0.4
rpsA 1834465 c.924T>C synonymous_variant 0.44
rpsA 1834468 c.927A>C synonymous_variant 0.44
rpsA 1834474 c.933C>G synonymous_variant 0.44
rpsA 1834489 c.948T>C synonymous_variant 0.46
rpsA 1834513 c.972C>G synonymous_variant 0.64
rpsA 1834543 c.1002C>G synonymous_variant 0.6
rpsA 1834546 c.1005T>C synonymous_variant 0.58
rpsA 1834552 c.1011G>C synonymous_variant 0.54
rpsA 1834555 c.1014T>G synonymous_variant 0.52
rpsA 1834561 c.1020C>G synonymous_variant 0.59
rpsA 1834609 c.1068T>C synonymous_variant 0.62
rpsA 1834619 c.1078T>C synonymous_variant 0.62
rpsA 1834627 c.1086C>G synonymous_variant 0.62
rpsA 1834633 c.1092A>G synonymous_variant 0.61
rpsA 1834639 c.1098T>C synonymous_variant 0.59
rpsA 1834667 p.Ala376Ser missense_variant 0.5
rpsA 1834690 c.1149T>C synonymous_variant 0.56
rpsA 1834732 c.1191T>C synonymous_variant 0.54
rpsA 1834738 c.1197A>G synonymous_variant 0.5
rpsA 1834747 c.1206A>G synonymous_variant 0.45
rpsA 1834753 c.1212T>C synonymous_variant 0.4
rpsA 1834759 c.1218A>C synonymous_variant 0.38
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155649 p.Tyr155His missense_variant 0.25
katG 2155655 p.Lys153Gln missense_variant 0.33
katG 2155661 p.Val151Ile missense_variant 0.3
katG 2155674 c.438G>C synonymous_variant 0.33
katG 2155680 c.432G>C synonymous_variant 0.36
katG 2155691 c.421T>C synonymous_variant 0.46
katG 2155716 c.396T>C synonymous_variant 0.45
katG 2155722 c.390G>C synonymous_variant 0.43
katG 2155737 c.375C>G synonymous_variant 0.45
katG 2155741 p.Gly124His missense_variant 0.47
katG 2155765 p.His116Ser missense_variant 0.45
katG 2155785 c.327T>C synonymous_variant 0.38
katG 2155796 p.Ala106Ser missense_variant 0.35
katG 2155806 c.306T>C synonymous_variant 0.27
katG 2155812 c.300G>C synonymous_variant 0.27
katG 2155815 c.297G>C synonymous_variant 0.29
katG 2155823 p.His97Asn missense_variant 0.31
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2169927 p.Asn229Ser missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517917 c.-198G>C upstream_gene_variant 0.37
kasA 2517921 c.-194_-192delACCinsGTG upstream_gene_variant 0.33
kasA 2517945 c.-170A>G upstream_gene_variant 0.29
kasA 2517950 c.-165C>G upstream_gene_variant 0.27
kasA 2517968 c.-147T>C upstream_gene_variant 0.25
kasA 2517974 c.-141T>C upstream_gene_variant 0.17
folC 2746198 c.1401C>T synonymous_variant 0.22
Rv2752c 3066295 c.-104C>T upstream_gene_variant 0.14
thyX 3067325 c.621A>G synonymous_variant 0.2
thyX 3067328 c.618G>C synonymous_variant 0.2
thyX 3067343 p.Ser201Thr missense_variant 0.17
thyX 3067346 c.600C>G synonymous_variant 0.17
thyX 3067355 p.Ala197Gly missense_variant 0.17
thyX 3067364 c.582C>T synonymous_variant 0.14
thyX 3067376 c.570G>T synonymous_variant 0.14
thyX 3067406 c.540A>G synonymous_variant 0.17
thyX 3067409 c.537C>G synonymous_variant 0.17
thyX 3067418 c.528C>G synonymous_variant 0.15
thyX 3067421 c.525G>C synonymous_variant 0.14
thyX 3067429 p.Ala173Ser missense_variant 0.17
thyX 3067430 c.516C>G synonymous_variant 0.17
thyX 3067436 c.510C>G synonymous_variant 0.17
thyX 3067439 c.507A>G synonymous_variant 0.17
thyX 3067442 c.504C>G synonymous_variant 0.17
thyX 3067445 c.501C>G synonymous_variant 0.17
thyX 3067451 c.495G>A synonymous_variant 0.18
thyX 3067457 c.489C>G synonymous_variant 0.18
thyX 3067463 c.483C>T synonymous_variant 0.18
thyA 3073917 c.555C>G synonymous_variant 0.22
thyA 3073923 c.547_549delTTGinsCTT synonymous_variant 0.25
thyA 3073932 c.538_540delAGCinsTCG synonymous_variant 0.25
thyA 3073950 c.522G>T synonymous_variant 0.27
thyA 3073953 c.519T>C synonymous_variant 0.27
thyA 3073956 c.516G>C synonymous_variant 0.25
thyA 3073959 c.513T>C synonymous_variant 0.25
thyA 3073964 c.508C>T synonymous_variant 0.25
thyA 3073968 c.504C>G synonymous_variant 0.25
thyA 3073977 c.495A>G synonymous_variant 0.25
thyA 3073980 c.492C>T synonymous_variant 0.25
thyA 3073983 c.489C>G synonymous_variant 0.25
thyA 3073989 c.483T>C synonymous_variant 0.25
thyA 3073995 c.477G>C synonymous_variant 0.25
thyA 3073999 p.Arg158Lys missense_variant 0.27
thyA 3074004 p.Asp156Glu missense_variant 0.25
thyA 3074028 c.444G>C synonymous_variant 0.23
thyA 3074031 c.441T>C synonymous_variant 0.23
thyA 3074037 c.435C>G synonymous_variant 0.23
ald 3086731 c.-89A>G upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fbiD 3339444 c.327C>T synonymous_variant 0.13
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474143 p.Trp46Tyr missense_variant 0.13
whiB7 3568795 c.-116A>G upstream_gene_variant 1.0
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
rpoA 3877674 c.834C>T synonymous_variant 0.13
rpoA 3877677 c.831G>C synonymous_variant 0.14
rpoA 3877704 c.804G>T synonymous_variant 0.21
rpoA 3877734 c.774G>C synonymous_variant 0.18
rpoA 3877737 c.771G>C synonymous_variant 0.2
rpoA 3877743 p.Asp255Glu missense_variant 0.18
rpoA 3877749 c.759C>T synonymous_variant 0.17
rpoA 3877752 p.Asp252Glu missense_variant 0.2
rpoA 3877765 p.Ala248Ser missense_variant 0.17
rpoA 3877770 p.Ser246Ala missense_variant 0.17
rpoA 3877773 c.735G>C synonymous_variant 0.17
rpoA 3877776 c.732T>C synonymous_variant 0.17
rpoA 3877794 c.714G>C synonymous_variant 0.23
rpoA 3877836 c.672A>G synonymous_variant 0.24
rpoA 3877842 c.666A>T synonymous_variant 0.24
rpoA 3877854 c.652_654delTTGinsCTC synonymous_variant 0.38
rpoA 3877866 c.642G>C synonymous_variant 0.42
rpoA 3877872 c.636C>T synonymous_variant 0.43
rpoA 3877875 c.633T>C synonymous_variant 0.43
rpoA 3877887 c.621G>C synonymous_variant 0.44
rpoA 3877893 c.615C>G synonymous_variant 0.44
rpoA 3877898 p.Pro204Ala missense_variant 0.46
rpoA 3877900 p.Ser203Thr missense_variant 0.46
rpoA 3877905 c.603A>C synonymous_variant 0.5
rpoA 3877908 c.600T>C synonymous_variant 0.48
rpoA 3877929 p.Ile193Val missense_variant 0.43
rpoA 3877934 c.574C>T synonymous_variant 0.42
rpoA 3877935 p.Lys191Arg missense_variant 0.42
rpoA 3877938 c.570C>T synonymous_variant 0.42
rpoA 3877962 c.546G>C synonymous_variant 0.45
rpoA 3877971 p.Asp179Glu missense_variant 0.42
rpoA 3877974 c.534G>C synonymous_variant 0.39
rpoA 3877989 c.519A>G synonymous_variant 0.38
rpoA 3877995 c.513G>C synonymous_variant 0.33
rpoA 3878001 c.507A>G synonymous_variant 0.13
rpoA 3878010 c.498C>G synonymous_variant 0.14
rpoA 3878061 c.447G>C synonymous_variant 0.18
rpoA 3878067 c.441C>G synonymous_variant 0.17
rpoA 3878070 c.438T>C synonymous_variant 0.15
rpoA 3878082 c.426T>G synonymous_variant 0.27
rpoA 3878102 p.Val136Ile missense_variant 0.4
rpoA 3878103 c.405A>G synonymous_variant 0.4
rpoA 3878106 c.402G>C synonymous_variant 0.43
rpoA 3878118 c.390T>C synonymous_variant 0.39
rpoA 3878124 c.384G>C synonymous_variant 0.39
rpoA 3878127 c.381G>C synonymous_variant 0.41
rpoA 3878130 c.378C>G synonymous_variant 0.4
rpoA 3878141 p.Met123Leu missense_variant 0.39
rpoA 3878143 p.Gly122Asp missense_variant 0.39
rpoA 3878145 c.363C>G synonymous_variant 0.39
rpoA 3878157 c.351C>G synonymous_variant 0.5
rpoA 3878163 c.345C>T synonymous_variant 0.5
rpoA 3878172 c.336G>C synonymous_variant 0.46
rpoA 3878185 p.Gly108Ala missense_variant 0.48
rpoA 3878188 p.Ala107Gly missense_variant 0.48
rpoA 3878193 c.315T>C synonymous_variant 0.48
rpoA 3878197 p.Glu104Ala missense_variant 0.5
rpoA 3878202 c.306G>C synonymous_variant 0.48
rpoA 3878217 p.Leu97Val missense_variant 0.48
rpoA 3878244 c.264G>A synonymous_variant 0.43
rpoA 3878251 c.256_257delTCinsAG synonymous_variant 0.37
rpoA 3878253 c.255G>C synonymous_variant 0.37
rpoA 3878259 c.249G>C synonymous_variant 0.39
rpoA 3878264 p.Ser82Gly missense_variant 0.41
rpoA 3878271 c.237T>C synonymous_variant 0.41
rpoA 3878282 p.Ile76Val missense_variant 0.23
rpoA 3878283 p.Glu75Asp missense_variant 0.23
rpoA 3878556 c.-49T>G upstream_gene_variant 0.4
clpC1 4038468 c.2236delG frameshift_variant 0.17
clpC1 4038740 c.1965G>C synonymous_variant 0.33
clpC1 4038749 c.1956C>G synonymous_variant 0.35
clpC1 4038755 c.1950G>T synonymous_variant 0.4
clpC1 4038767 c.1938G>T synonymous_variant 0.39
clpC1 4038773 c.1932T>C synonymous_variant 0.41
clpC1 4038782 c.1923G>C synonymous_variant 0.47
clpC1 4038795 p.Ser637Thr missense_variant 0.45
clpC1 4038810 p.Gln632Pro missense_variant 0.52
clpC1 4038812 c.1893T>C synonymous_variant 0.52
clpC1 4038815 c.1890G>C synonymous_variant 0.5
clpC1 4038839 c.1866G>C synonymous_variant 0.54
clpC1 4038842 c.1863G>C synonymous_variant 0.52
clpC1 4038845 c.1860G>C synonymous_variant 0.52
clpC1 4038860 c.1845G>C synonymous_variant 0.56
clpC1 4038878 c.1827A>G synonymous_variant 0.53
clpC1 4038887 c.1818G>A synonymous_variant 0.47
clpC1 4038890 p.Glu605Asp missense_variant 0.44
clpC1 4038905 c.1800A>C synonymous_variant 0.47
clpC1 4038911 c.1794G>T synonymous_variant 0.47
clpC1 4038914 c.1791G>T synonymous_variant 0.55
clpC1 4038917 c.1788C>T synonymous_variant 0.5
clpC1 4038923 c.1782A>C synonymous_variant 0.58
clpC1 4038932 c.1773G>T synonymous_variant 0.5
clpC1 4038941 c.1764G>C synonymous_variant 0.6
clpC1 4038953 c.1752A>G synonymous_variant 0.75
clpC1 4038956 c.1749T>C synonymous_variant 0.75
clpC1 4038965 c.1740T>C synonymous_variant 0.82
clpC1 4038971 c.1734T>C synonymous_variant 0.67
clpC1 4038974 c.1731T>C synonymous_variant 0.67
clpC1 4038977 c.1728G>C synonymous_variant 0.8
clpC1 4038980 c.1725C>T synonymous_variant 0.8
clpC1 4038986 p.Asp573Glu missense_variant 0.8
clpC1 4038989 c.1716T>C synonymous_variant 0.8
clpC1 4038997 c.1708T>C synonymous_variant 0.82
clpC1 4039003 p.Asn568Asp missense_variant 0.15
clpC1 4039004 c.1701C>G synonymous_variant 0.71
clpC1 4039021 c.1684C>T synonymous_variant 0.75
clpC1 4039022 c.1683A>G synonymous_variant 0.85
clpC1 4039031 c.1674T>A synonymous_variant 0.75
clpC1 4039037 c.1668T>C synonymous_variant 0.68
clpC1 4039046 c.1659C>T synonymous_variant 0.69
clpC1 4039067 c.1638G>C synonymous_variant 0.69
clpC1 4039073 c.1632C>T synonymous_variant 0.68
clpC1 4039082 c.1623C>T synonymous_variant 0.65
clpC1 4039085 c.1620A>G synonymous_variant 0.62
clpC1 4039094 c.1611C>G synonymous_variant 0.62
clpC1 4039097 c.1608G>C synonymous_variant 0.62
clpC1 4039103 c.1602T>G synonymous_variant 0.65
clpC1 4039106 c.1599G>C synonymous_variant 0.65
clpC1 4039112 c.1593C>G synonymous_variant 0.62
clpC1 4039116 p.Lys530Arg missense_variant 0.62
clpC1 4039118 c.1587C>G synonymous_variant 0.62
clpC1 4039121 c.1584T>C synonymous_variant 0.62
clpC1 4039124 c.1581C>G synonymous_variant 0.62
clpC1 4039142 c.1563A>G synonymous_variant 0.57
clpC1 4039145 c.1560G>C synonymous_variant 0.52
clpC1 4039172 c.1533A>G synonymous_variant 0.29
clpC1 4039178 c.1527G>C synonymous_variant 0.33
clpC1 4039181 c.1522_1524delTTGinsCTC synonymous_variant 0.22
clpC1 4039187 c.1518G>T synonymous_variant 0.2
clpC1 4039454 c.1251A>G synonymous_variant 0.22
clpC1 4039463 c.1242C>G synonymous_variant 0.2
clpC1 4039466 c.1239T>C synonymous_variant 0.2
clpC1 4039469 c.1236T>C synonymous_variant 0.22
clpC1 4039472 c.1233G>C synonymous_variant 0.22
clpC1 4039481 c.1224T>G synonymous_variant 0.33
clpC1 4039484 c.1221T>C synonymous_variant 0.29
clpC1 4039517 c.1188C>G synonymous_variant 0.26
clpC1 4039532 c.1173C>T synonymous_variant 0.26
clpC1 4039541 c.1164C>G synonymous_variant 0.22
clpC1 4039553 c.1152C>G synonymous_variant 0.16
clpC1 4039559 c.1146C>G synonymous_variant 0.16
clpC1 4039562 c.1143C>T synonymous_variant 0.15
clpC1 4039565 p.Val380Ala missense_variant 0.15
clpC1 4039577 c.1128T>C synonymous_variant 0.15
clpC1 4039586 c.1119G>C synonymous_variant 0.15
clpC1 4039595 c.1110C>T synonymous_variant 0.18
clpC1 4039602 p.Ala368Gln missense_variant 0.19
clpC1 4039610 c.1095G>C synonymous_variant 0.3
clpC1 4039616 c.1089G>C synonymous_variant 0.3
clpC1 4039654 p.Thr351Ser missense_variant 0.44
clpC1 4039655 c.1050G>C synonymous_variant 0.44
clpC1 4039661 c.1044T>C synonymous_variant 0.44
clpC1 4039670 c.1035G>C synonymous_variant 0.52
clpC1 4039694 c.1011G>C synonymous_variant 0.57
clpC1 4039724 c.981A>G synonymous_variant 0.57
clpC1 4039733 c.972G>C synonymous_variant 0.61
clpC1 4039748 c.957G>C synonymous_variant 0.63
clpC1 4039751 c.954A>G synonymous_variant 0.61
clpC1 4039757 c.948A>G synonymous_variant 0.59
clpC1 4039760 c.945T>C synonymous_variant 0.59
clpC1 4039766 c.939T>C synonymous_variant 0.57
clpC1 4039769 c.936C>G synonymous_variant 0.59
clpC1 4039772 c.933G>A synonymous_variant 0.59
clpC1 4039787 c.916_918delTCGinsAGC synonymous_variant 0.48
clpC1 4039796 c.909C>T synonymous_variant 0.52
clpC1 4039802 c.903G>C synonymous_variant 0.59
clpC1 4039820 c.885T>C synonymous_variant 0.59
clpC1 4039823 c.882T>G synonymous_variant 0.62
clpC1 4039834 p.Thr291Pro missense_variant 0.2
clpC1 4039835 c.869_870insT frameshift_variant 0.5
clpC1 4039850 c.855T>C synonymous_variant 0.69
clpC1 4039856 c.849C>T synonymous_variant 0.67
clpC1 4039898 c.807C>G synonymous_variant 0.44
clpC1 4039904 c.801A>G synonymous_variant 0.42
clpC1 4039907 c.798G>A synonymous_variant 0.38
clpC1 4039916 c.789T>C synonymous_variant 0.42
clpC1 4039931 c.774T>C synonymous_variant 0.36
clpC1 4039934 c.771G>C synonymous_variant 0.33
clpC1 4039946 c.759A>T synonymous_variant 0.3
clpC1 4039949 c.756G>C synonymous_variant 0.27
clpC1 4039952 c.753T>C synonymous_variant 0.28
clpC1 4039958 c.747G>C synonymous_variant 0.32
clpC1 4039988 c.717C>G synonymous_variant 0.33
clpC1 4039991 c.714G>T synonymous_variant 0.34
clpC1 4039994 p.Glu237Asn missense_variant 0.39
clpC1 4040001 p.His235Ser missense_variant 0.39
clpC1 4040009 c.696C>G synonymous_variant 0.39
clpC1 4040015 c.690G>C synonymous_variant 0.38
clpC1 4040021 c.684A>C synonymous_variant 0.41
clpC1 4040024 c.681A>G synonymous_variant 0.42
clpC1 4040027 c.678C>G synonymous_variant 0.42
clpC1 4040033 c.672G>C synonymous_variant 0.44
clpC1 4040036 c.669C>G synonymous_variant 0.44
clpC1 4040051 c.654C>G synonymous_variant 0.46
clpC1 4040069 c.636G>C synonymous_variant 0.45
clpC1 4040087 c.618G>C synonymous_variant 0.41
clpC1 4040090 c.615T>G synonymous_variant 0.41
clpC1 4040105 c.600C>G synonymous_variant 0.33
clpC1 4040267 c.438A>G synonymous_variant 0.13
clpC1 4040273 c.432T>A synonymous_variant 0.12
clpC1 4040300 c.405C>T synonymous_variant 0.18
clpC1 4040306 p.Arg133Ser missense_variant 0.18
clpC1 4040310 p.Thr132Asn missense_variant 0.18
clpC1 4040315 p.Glu130Asp missense_variant 0.19
clpC1 4040330 c.375C>G synonymous_variant 0.18
clpC1 4040336 c.369G>C synonymous_variant 0.18
clpC1 4040348 c.357G>C synonymous_variant 0.18
clpC1 4040354 c.351A>G synonymous_variant 0.18
clpC1 4040357 c.348T>C synonymous_variant 0.19
clpC1 4040363 c.342A>C synonymous_variant 0.17
clpC1 4040369 c.336C>G synonymous_variant 0.17
clpC1 4040375 c.330G>C synonymous_variant 0.17
clpC1 4040380 c.325T>C synonymous_variant 0.15
clpC1 4040381 c.324T>C synonymous_variant 0.15
clpC1 4040387 c.318A>G synonymous_variant 0.14
clpC1 4040522 c.183T>C synonymous_variant 0.14
clpC1 4040531 p.Gly58Ala missense_variant 0.15
clpC1 4040570 c.135C>G synonymous_variant 0.14
clpC1 4040573 c.132T>C synonymous_variant 0.14
clpC1 4040582 c.123G>T synonymous_variant 0.15
clpC1 4040585 c.120A>G synonymous_variant 0.15
clpC1 4040588 c.117T>C synonymous_variant 0.15
clpC1 4040597 c.108C>T synonymous_variant 0.15
clpC1 4040600 c.105A>G synonymous_variant 0.15
clpC1 4040603 c.102T>C synonymous_variant 0.15
clpC1 4040606 c.99T>C synonymous_variant 0.16
clpC1 4040633 c.72C>T synonymous_variant 0.17
panD 4044350 c.-69C>T upstream_gene_variant 0.14
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243346 c.114A>G synonymous_variant 1.0
embA 4243460 c.228C>T synonymous_variant 1.0
aftB 4267647 p.Asp397Gly missense_variant 1.0
ethR 4326964 c.-585G>A upstream_gene_variant 0.17
ethR 4326970 c.-579G>T upstream_gene_variant 0.18
ethA 4326984 p.Pro164Thr missense_variant 0.13
whiB6 4338371 p.Thr51Pro missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0