Rv3596c - c.1638G>C
Drug resistance types
63 Sensitive
7 RR-TB
86 HR-TB
15 MDR-TB
8 Pre-XDR-TB
0 XDR-TB
64 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 43 |
| lineage4.3.3 | 2 |
| lineage3.1.3 | 1 |
| lineage4.3.4.2.1 | 4 |
| lineage4.1.1.2 | 1 |
| lineage2.2.1 | 19 |
| lineage3 | 4 |
| lineage4 | 61 |
| lineage4.6.2.2 | 2 |
| lineage1.1.2 | 2 |
| 56 | |
| lineage4.9;lineage2.1 | 1 |
| lineage4.2.1 | 2 |
| lineage4.8 | 3 |
| lineage2.1 | 2 |
| lineage2.2.1.1 | 1 |
| lineage4.1 | 1 |
| La2 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.1.2.1 | 2 |
| lineage4.1.2 | 2 |
| lineage4.8.1 | 1 |
| lineage4.4.2 | 2 |
| lineage4.3.4.1 | 1 |
| lineage2.2 | 4 |
| La1 | 1 |
| La1.8.1 | 4 |
| lineage6.1.1 | 2 |
| lineage4.9;La1.3 | 1 |
| lineage3.1.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.3.4 | 1 |
| lineage1.1.3.1 | 1 |
| lineage6 | 1 |
| lineage6.1.3 | 1 |
| lineage4.6.1.1 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2.1.2 | 2 |
| La1.7.1 | 1 |
| lineage4;lineage2.2 | 1 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.5 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 243 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4816852 | Other | lineage4.9 | None | ERR4817204 | RR-TB | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR3275709 | HR-TB | lineage3 | nl | SRR5341366 | Sensitive | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341387 | Other | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341396 | Other | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341330 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR5341469 | Other | lineage4 | None | SRR5341467 | Other | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341470 | HR-TB | None | SRR5535933 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | ERR4821655 | Sensitive | lineage4 | None | ERR2693227 | Other | lineage4.9 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045892 | Sensitive | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6046385 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6046210 | Other | lineage4 | None | SRR6045217 | Other | lineage4 | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6511621 | HR-TB | None | ERR11466072 | Sensitive | lineage4.3.4.2.1 | None | ERR323037 | HR-TB | lineage4 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831997 | MDR-TB | lineage2.1 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831740 | HR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | ERR108471 | HR-TB | lineage4 | None | ERR502510 | Sensitive | lineage4 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR294266 | HR-TB | None | ERR502524 | HR-TB | La2 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR067699 | HR-TB | lineage4 | None | ERR1063857 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063896 | Sensitive | None | ERR11465333 | Sensitive | lineage4.3.4.2.1 | None | SRR8217918 | HR-TB | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR323039 | HR-TB | None | ERR323045 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR323053 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | DRR188519 | Other | lineage4.4.2 | None | ERR323085 | Sensitive | lineage4 | None | ERR11465279 | Sensitive | lineage4.3.4.1 | None | ERR1035122 | Sensitive | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063855 | Other | lineage4 | None | ERR1063862 | HR-TB | None | ERR1063859 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283014 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283028 | Other | None | ERR3283031 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283041 | Other | lineage4.9 | None | ERR3283058 | Other | lineage4.9 | None | ERR3445501 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797067 | Other | La1.8.1 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR4797264 | Sensitive | None | ERR3797086 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769521 | HR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR4024991 | Other | None | ERR4188247 | HR-TB | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473332 | Other | lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798504 | Other | lineage3 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799025 | Pre-XDR-TB | None | ERR6358951 | HR-TB | lineage4 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR6358979 | Other | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6866022 | Other | None | ERR6866410 | Sensitive | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR6866807 | HR-TB | lineage4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR9786076 | Sensitive | lineage3 | None | ERR736837 | Other | lineage4.9 | None | ERR736848 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR751326 | Sensitive | lineage4 | None | ERR987722 | HR-TB | None | ERR9786597 | Sensitive | lineage4.6.2.2 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787030 | Sensitive | lineage6 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10809074 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1172310 | HR-TB | None | SRR1158918 | Sensitive | lineage4 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1173568 | Other | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR14782405 | HR-TB | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR14801749 | Sensitive | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR176778 | HR-TB | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR8692879 | HR-TB | lineage4.9 | None | SRR8692887 | Other | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR3675246 | Sensitive | lineage4 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR176779 | HR-TB | None | ERR4815471 | Other | lineage4.9 | None | ERR702405 | Sensitive | lineage2.1 | None | ERR181824 | HR-TB | lineage4 | None | ERR176740 | HR-TB | None | ERR181887 | HR-TB | None | ERR176651 | HR-TB | None | ERR4816964 | Other | lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | ERR212123 | Other | None | ERR212125 | HR-TB | lineage4 | None | ERR4816466 | HR-TB | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR212034 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | SRR3675571 | HR-TB | None | ERR216965 | HR-TB | lineage4.9 | None |
|---|
