Run ID: ERR3797067
Sample name:
Date: 01-04-2023 03:04:19
Number of reads: 1229521
Percentage reads mapped: 69.14
Strain: La1.8.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La1 | M.bovis | None | None | 0.99 |
La1.8 | M.bovis | None | None | 1.0 |
La1.8.1 | M.bovis | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472644 | n.799C>T | non_coding_transcript_exon_variant | 0.24 | streptomycin |
rrs | 1473247 | n.1402C>A | non_coding_transcript_exon_variant | 0.15 | kanamycin, capreomycin, aminoglycosides, amikacin |
rrs | 1473329 | n.1484G>T | non_coding_transcript_exon_variant | 0.14 | kanamycin, capreomycin, aminoglycosides, amikacin |
pncA | 2289073 | p.His57Asp | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5752 | c.513G>A | synonymous_variant | 1.0 |
gyrB | 6172 | c.933C>T | synonymous_variant | 0.22 |
gyrB | 6178 | c.939C>T | synonymous_variant | 0.21 |
gyrB | 6203 | p.Ser322Ala | missense_variant | 0.21 |
gyrB | 6214 | c.975G>C | synonymous_variant | 0.21 |
gyrB | 6215 | p.Ser326Thr | missense_variant | 0.21 |
gyrB | 6223 | c.984G>C | synonymous_variant | 0.23 |
gyrB | 6242 | p.Arg335Lys | missense_variant | 0.21 |
gyrB | 6250 | c.1011A>G | synonymous_variant | 0.21 |
gyrB | 6253 | c.1014G>C | synonymous_variant | 0.22 |
gyrB | 6265 | c.1026C>T | synonymous_variant | 0.21 |
gyrB | 6268 | c.1029C>G | synonymous_variant | 0.23 |
gyrB | 6286 | c.1047T>C | synonymous_variant | 0.17 |
gyrB | 6292 | c.1053G>C | synonymous_variant | 0.15 |
gyrB | 6295 | c.1056A>G | synonymous_variant | 0.15 |
gyrB | 6301 | c.1062G>C | synonymous_variant | 0.16 |
gyrA | 6406 | c.-896C>T | upstream_gene_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7451 | c.150C>G | synonymous_variant | 0.13 |
gyrA | 7457 | c.156T>C | synonymous_variant | 0.14 |
gyrA | 7472 | c.171T>C | synonymous_variant | 0.14 |
gyrA | 7475 | c.174A>G | synonymous_variant | 0.16 |
gyrA | 7480 | p.Phe60Tyr | missense_variant | 0.16 |
gyrA | 7484 | c.183T>C | synonymous_variant | 0.16 |
gyrA | 7496 | c.195C>G | synonymous_variant | 0.15 |
gyrA | 7499 | c.198G>C | synonymous_variant | 0.17 |
gyrA | 7506 | p.Ser69Gly | missense_variant | 0.15 |
gyrA | 7520 | c.219G>C | synonymous_variant | 0.15 |
gyrA | 7532 | c.231T>G | synonymous_variant | 0.14 |
gyrA | 7541 | c.240C>G | synonymous_variant | 0.14 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7841 | c.540C>T | synonymous_variant | 0.13 |
gyrA | 7847 | c.546G>C | synonymous_variant | 0.13 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 8741 | c.1440C>T | synonymous_variant | 0.98 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9217 | p.Asp639Ala | missense_variant | 0.85 |
gyrA | 9230 | c.1929T>C | synonymous_variant | 0.15 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 760184 | c.378A>G | synonymous_variant | 0.15 |
rpoB | 760235 | c.429T>C | synonymous_variant | 0.12 |
rpoB | 760475 | c.669A>G | synonymous_variant | 0.18 |
rpoB | 760481 | c.675G>T | synonymous_variant | 0.17 |
rpoB | 760484 | c.678A>G | synonymous_variant | 0.17 |
rpoB | 760502 | c.696C>G | synonymous_variant | 0.15 |
rpoB | 760532 | c.726T>C | synonymous_variant | 0.17 |
rpoB | 760547 | c.741G>C | synonymous_variant | 0.14 |
rpoB | 762065 | c.2259T>C | synonymous_variant | 0.14 |
rpoB | 762114 | p.Ile770Val | missense_variant | 0.14 |
rpoB | 762122 | c.2316C>T | synonymous_variant | 0.14 |
rpoB | 762149 | c.2343G>C | synonymous_variant | 0.15 |
rpoB | 762156 | p.Val784Ile | missense_variant | 0.15 |
rpoB | 762167 | c.2361T>C | synonymous_variant | 0.15 |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.13 |
rpoB | 762218 | c.2412T>C | synonymous_variant | 0.14 |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.13 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.98 |
rpoC | 763468 | c.99G>C | synonymous_variant | 0.16 |
rpoC | 763486 | c.117T>C | synonymous_variant | 0.15 |
rpoC | 763492 | c.123G>C | synonymous_variant | 0.14 |
rpoC | 763528 | c.159G>A | synonymous_variant | 0.16 |
rpoC | 763531 | c.162G>T | synonymous_variant | 0.14 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.19 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.21 |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.24 |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.17 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.17 |
rpoC | 764371 | c.1002G>C | synonymous_variant | 0.14 |
rpoC | 764387 | c.1018_1020delTTGinsCTC | synonymous_variant | 0.13 |
rpoC | 764405 | c.1036_1038delAGGinsCGC | synonymous_variant | 0.15 |
rpoC | 764434 | c.1065A>G | synonymous_variant | 0.17 |
rpoC | 764435 | c.1066A>C | synonymous_variant | 0.19 |
rpoC | 764452 | c.1083T>C | synonymous_variant | 0.17 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.17 |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.17 |
rpoC | 764485 | c.1116G>C | synonymous_variant | 0.14 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.14 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.16 |
rpoC | 764539 | c.1170C>G | synonymous_variant | 0.18 |
rpoC | 764548 | c.1179G>C | synonymous_variant | 0.14 |
rpoC | 764560 | c.1191T>C | synonymous_variant | 0.15 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.14 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.22 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.27 |
rpoC | 764635 | c.1266C>G | synonymous_variant | 0.17 |
rpoC | 764650 | c.1281G>C | synonymous_variant | 0.22 |
rpoC | 764665 | c.1296C>G | synonymous_variant | 0.19 |
rpoC | 764668 | c.1299C>T | synonymous_variant | 0.17 |
rpoC | 764671 | c.1302G>C | synonymous_variant | 0.19 |
rpoC | 764695 | c.1326T>C | synonymous_variant | 0.17 |
rpoC | 764701 | c.1332C>G | synonymous_variant | 0.17 |
rpoC | 764706 | p.Leu446Gln | missense_variant | 0.17 |
rpoC | 764746 | c.1377G>T | synonymous_variant | 0.24 |
rpoC | 764749 | c.1380G>C | synonymous_variant | 0.13 |
rpoC | 764758 | c.1389C>G | synonymous_variant | 0.24 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.22 |
rpoC | 764803 | c.1434C>T | synonymous_variant | 0.18 |
rpoC | 764809 | c.1440C>T | synonymous_variant | 0.17 |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.14 |
rpoC | 764827 | c.1458G>C | synonymous_variant | 0.14 |
rpoC | 764858 | c.1489T>C | synonymous_variant | 0.16 |
rpoC | 764869 | c.1500C>T | synonymous_variant | 0.14 |
rpoC | 764875 | c.1506C>T | synonymous_variant | 0.15 |
rpoC | 764878 | c.1509C>G | synonymous_variant | 0.16 |
rpoC | 764887 | c.1518G>C | synonymous_variant | 0.16 |
rpoC | 764888 | c.1519T>C | synonymous_variant | 0.19 |
rpoC | 764911 | c.1542A>G | synonymous_variant | 0.2 |
rpoC | 764912 | p.Met515Gln | missense_variant | 0.17 |
rpoC | 764923 | c.1554A>G | synonymous_variant | 0.19 |
rpoC | 764935 | c.1566T>C | synonymous_variant | 0.16 |
rpoC | 767098 | c.3729T>C | synonymous_variant | 0.23 |
rpoC | 767104 | c.3735C>G | synonymous_variant | 0.23 |
rpoC | 767105 | p.Asn1246Gln | missense_variant | 0.22 |
rpoC | 767119 | c.3750A>G | synonymous_variant | 0.27 |
rpoC | 767167 | c.3798C>T | synonymous_variant | 0.18 |
rpoC | 767173 | c.3804C>A | synonymous_variant | 0.16 |
rpoC | 767174 | p.Asn1269His | missense_variant | 0.16 |
rpoC | 767180 | p.Ala1271Gln | missense_variant | 0.19 |
rpoC | 767191 | c.3822C>G | synonymous_variant | 0.18 |
rpoC | 767197 | c.3828G>A | synonymous_variant | 0.15 |
rpoC | 767212 | c.3843G>C | synonymous_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775847 | c.2634G>T | synonymous_variant | 0.17 |
mmpL5 | 775851 | p.Ser877Thr | missense_variant | 0.17 |
mmpL5 | 775856 | c.2625T>C | synonymous_variant | 0.17 |
mmpL5 | 775862 | c.2619G>C | synonymous_variant | 0.19 |
mmpL5 | 775885 | p.Ile866Leu | missense_variant | 0.18 |
mmpL5 | 775889 | c.2592C>G | synonymous_variant | 0.18 |
mmpL5 | 775909 | p.Leu858Ile | missense_variant | 0.14 |
mmpL5 | 775912 | c.2569C>A | synonymous_variant | 0.13 |
mmpL5 | 775916 | c.2565T>C | synonymous_variant | 0.23 |
mmpL5 | 775937 | c.2544G>C | synonymous_variant | 0.16 |
mmpL5 | 775949 | c.2532G>C | synonymous_variant | 0.24 |
mmpL5 | 775955 | p.Ile842Val | missense_variant | 0.17 |
mmpL5 | 775961 | c.2520C>G | synonymous_variant | 0.15 |
mmpL5 | 775981 | p.Leu834Met | missense_variant | 0.12 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781853 | c.294C>T | synonymous_variant | 0.14 |
rpsL | 781859 | c.300T>C | synonymous_variant | 0.16 |
rpsL | 781868 | c.309T>C | synonymous_variant | 0.14 |
rpsL | 781871 | c.312G>C | synonymous_variant | 0.13 |
rpsL | 781901 | c.342C>T | synonymous_variant | 0.12 |
rpsL | 781916 | c.357T>G | synonymous_variant | 0.12 |
rplC | 800612 | c.-197A>G | upstream_gene_variant | 0.14 |
rplC | 800618 | c.-191T>C | upstream_gene_variant | 0.14 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
fbiC | 1304580 | c.1650T>C | synonymous_variant | 0.18 |
fbiC | 1304613 | c.1683T>C | synonymous_variant | 0.23 |
fbiC | 1304634 | c.1704C>G | synonymous_variant | 0.18 |
fbiC | 1304640 | c.1710A>C | synonymous_variant | 0.19 |
fbiC | 1304646 | c.1716T>C | synonymous_variant | 0.2 |
fbiC | 1304655 | c.1725C>T | synonymous_variant | 0.19 |
fbiC | 1304658 | c.1728C>G | synonymous_variant | 0.17 |
fbiC | 1304671 | p.Val581Thr | missense_variant | 0.16 |
fbiC | 1304675 | p.Gly582Asp | missense_variant | 0.16 |
fbiC | 1304694 | c.1764A>C | synonymous_variant | 0.15 |
fbiC | 1304703 | c.1773C>G | synonymous_variant | 0.14 |
fbiC | 1304715 | c.1785G>C | synonymous_variant | 0.17 |
fbiC | 1304724 | c.1794A>G | synonymous_variant | 0.16 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471979 | n.134T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1471986 | n.141C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472019 | n.174G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472023 | n.178G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472028 | n.183A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472032 | n.187G>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472033 | n.188A>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472035 | n.190G>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472040 | n.195T>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472041 | n.196C>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472042 | n.197T>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472053 | n.211_212delGC | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472061 | n.216A>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472315 | n.470T>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472328 | n.483G>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472337 | n.492C>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472380 | n.535G>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472446 | n.601T>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472452 | n.607G>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472489 | n.644A>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472674 | n.829T>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472677 | n.832C>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472682 | n.837T>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472683 | n.838T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472686 | n.841G>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472847 | n.1002G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472848 | n.1003T>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472858 | n.1013G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472860 | n.1015C>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472970 | n.1125C>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473026 | n.1181T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.32 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473315 | n.1470T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473317 | n.1472G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473746 | n.89T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473758 | n.101G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473770 | n.113T>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473836 | n.179A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474174 | n.517A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474183 | n.526T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474263 | n.606G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474308 | n.651G>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474310 | n.653T>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474495 | n.838G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474496 | n.839C>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474497 | n.840G>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474498 | n.841G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474505 | n.848C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474506 | n.849C>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474507 | n.850G>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474508 | n.851C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474552 | n.895C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474636 | n.979A>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474637 | n.980C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474639 | n.982G>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474662 | n.1005C>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474672 | n.1015C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474673 | n.1016T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474676 | n.1019T>A | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474714 | n.1058delT | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474753 | n.1096A>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.34 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.35 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.37 |
rrl | 1475108 | n.1451C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475343 | n.1686A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475358 | n.1701T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475363 | n.1706C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475369 | n.1712G>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475378 | n.1721A>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475379 | n.1722G>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475380 | n.1723C>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475387 | n.1730C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475397 | n.1740G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475398 | n.1741C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475399 | n.1742T>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475402 | n.1745C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475403 | n.1746T>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475404 | n.1747A>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475429 | n.1772G>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1475452 | n.1795C>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475460 | n.1803A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475480 | n.1823A>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475531 | n.1874C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475750 | n.2093A>C | non_coding_transcript_exon_variant | 0.72 |
rrl | 1475753 | n.2096C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475763 | n.2106C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475764 | n.2107A>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475765 | n.2108A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475775 | n.2118G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475991 | n.2334T>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475995 | n.2338G>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476030 | n.2373A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476032 | n.2375C>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476034 | n.2377C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476035 | n.2378G>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476044 | n.2387T>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476047 | n.2390G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476088 | n.2431A>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476251 | n.2594T>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476256 | n.2599A>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476299 | n.2642C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476337 | n.2680C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476529 | n.2872A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476583 | n.2926G>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476674 | n.3017T>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476679 | n.3022T>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476690 | n.3033C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476692 | n.3035T>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476693 | n.3036G>A | non_coding_transcript_exon_variant | 0.18 |
rpsA | 1833697 | c.156C>G | synonymous_variant | 0.17 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.18 |
rpsA | 1833733 | c.192C>G | synonymous_variant | 0.15 |
rpsA | 1833734 | p.Ala65Ser | missense_variant | 0.15 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.18 |
rpsA | 1833802 | c.261A>G | synonymous_variant | 0.16 |
rpsA | 1833829 | c.288A>G | synonymous_variant | 0.16 |
rpsA | 1833838 | c.297G>C | synonymous_variant | 0.12 |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.13 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.15 |
rpsA | 1833892 | c.351G>A | synonymous_variant | 0.14 |
rpsA | 1833894 | p.Ala118Glu | missense_variant | 0.14 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.15 |
rpsA | 1833949 | c.408T>C | synonymous_variant | 0.17 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.16 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.2 |
rpsA | 1833991 | c.450C>A | synonymous_variant | 0.12 |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.14 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102193 | p.Arg284Trp | missense_variant | 0.97 |
ndh | 2103173 | c.-132delG | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168011 | p.Ser868Arg | missense_variant | 1.0 |
PPE35 | 2168319 | p.Thr765Ile | missense_variant | 1.0 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
eis | 2715125 | p.Thr70Ala | missense_variant | 1.0 |
Rv2752c | 3065988 | p.Glu68Asp | missense_variant | 0.93 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474427 | p.Val141Ile | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
rpoA | 3877662 | c.846C>T | synonymous_variant | 0.13 |
rpoA | 3877668 | c.840A>G | synonymous_variant | 0.15 |
rpoA | 3877686 | c.822A>G | synonymous_variant | 0.16 |
rpoA | 3877692 | c.816G>C | synonymous_variant | 0.16 |
rpoA | 3877704 | c.804G>T | synonymous_variant | 0.15 |
rpoA | 3878193 | c.315T>C | synonymous_variant | 0.14 |
rpoA | 3878217 | c.291A>G | synonymous_variant | 0.15 |
rpoA | 3878630 | c.-124delC | upstream_gene_variant | 1.0 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
clpC1 | 4039064 | c.1641C>T | synonymous_variant | 0.17 |
clpC1 | 4039067 | c.1638G>C | synonymous_variant | 0.17 |
clpC1 | 4039073 | c.1632C>T | synonymous_variant | 0.17 |
clpC1 | 4039079 | c.1626C>G | synonymous_variant | 0.17 |
clpC1 | 4039085 | c.1620A>G | synonymous_variant | 0.18 |
clpC1 | 4039091 | c.1614G>C | synonymous_variant | 0.17 |
clpC1 | 4039097 | c.1608G>C | synonymous_variant | 0.18 |
clpC1 | 4039112 | c.1593C>G | synonymous_variant | 0.17 |
clpC1 | 4039121 | c.1584T>C | synonymous_variant | 0.19 |
clpC1 | 4039142 | c.1563A>G | synonymous_variant | 0.2 |
clpC1 | 4039145 | c.1560G>C | synonymous_variant | 0.2 |
clpC1 | 4039169 | p.Glu512Asp | missense_variant | 0.2 |
clpC1 | 4039183 | c.1522T>C | synonymous_variant | 0.24 |
clpC1 | 4039187 | c.1518G>C | synonymous_variant | 0.22 |
clpC1 | 4039208 | c.1497C>G | synonymous_variant | 0.24 |
clpC1 | 4039286 | c.1419T>C | synonymous_variant | 0.15 |
clpC1 | 4039292 | c.1413C>G | synonymous_variant | 0.17 |
clpC1 | 4039295 | c.1410A>C | synonymous_variant | 0.14 |
clpC1 | 4039298 | c.1407T>C | synonymous_variant | 0.14 |
clpC1 | 4039310 | c.1395A>G | synonymous_variant | 0.15 |
clpC1 | 4039313 | c.1392C>G | synonymous_variant | 0.14 |
clpC1 | 4039394 | c.1311G>C | synonymous_variant | 0.14 |
clpC1 | 4039397 | c.1308A>G | synonymous_variant | 0.13 |
clpC1 | 4039409 | c.1296T>C | synonymous_variant | 0.13 |
clpC1 | 4039412 | c.1293T>G | synonymous_variant | 0.13 |
clpC1 | 4040363 | c.342A>T | synonymous_variant | 0.14 |
clpC1 | 4040369 | c.336C>G | synonymous_variant | 0.14 |
clpC1 | 4040375 | c.330G>C | synonymous_variant | 0.14 |
clpC1 | 4040380 | c.325T>C | synonymous_variant | 0.14 |
clpC1 | 4040387 | c.318A>G | synonymous_variant | 0.13 |
clpC1 | 4040393 | c.312G>C | synonymous_variant | 0.13 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 0.95 |
embC | 4242981 | p.Met1040Thr | missense_variant | 0.95 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246551 | p.Asn13Ser | missense_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |