TB-Profiler result

Run: ERR3797067

Summary

Run ID: ERR3797067

Sample name:

Date: 01-04-2023 03:04:19

Number of reads: 1229521

Percentage reads mapped: 69.14

Strain: La1.8.1

Drug-resistance: Other


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
La1 M.bovis None None 0.99
La1.8 M.bovis None None 1.0
La1.8.1 M.bovis None None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.24 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.15 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.14 kanamycin, capreomycin, aminoglycosides, amikacin
pncA 2289073 p.His57Asp missense_variant 1.0 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5752 c.513G>A synonymous_variant 1.0
gyrB 6172 c.933C>T synonymous_variant 0.22
gyrB 6178 c.939C>T synonymous_variant 0.21
gyrB 6203 p.Ser322Ala missense_variant 0.21
gyrB 6214 c.975G>C synonymous_variant 0.21
gyrB 6215 p.Ser326Thr missense_variant 0.21
gyrB 6223 c.984G>C synonymous_variant 0.23
gyrB 6242 p.Arg335Lys missense_variant 0.21
gyrB 6250 c.1011A>G synonymous_variant 0.21
gyrB 6253 c.1014G>C synonymous_variant 0.22
gyrB 6265 c.1026C>T synonymous_variant 0.21
gyrB 6268 c.1029C>G synonymous_variant 0.23
gyrB 6286 c.1047T>C synonymous_variant 0.17
gyrB 6292 c.1053G>C synonymous_variant 0.15
gyrB 6295 c.1056A>G synonymous_variant 0.15
gyrB 6301 c.1062G>C synonymous_variant 0.16
gyrA 6406 c.-896C>T upstream_gene_variant 1.0
gyrB 6446 p.Ala403Ser missense_variant 1.0
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7451 c.150C>G synonymous_variant 0.13
gyrA 7457 c.156T>C synonymous_variant 0.14
gyrA 7472 c.171T>C synonymous_variant 0.14
gyrA 7475 c.174A>G synonymous_variant 0.16
gyrA 7480 p.Phe60Tyr missense_variant 0.16
gyrA 7484 c.183T>C synonymous_variant 0.16
gyrA 7496 c.195C>G synonymous_variant 0.15
gyrA 7499 c.198G>C synonymous_variant 0.17
gyrA 7506 p.Ser69Gly missense_variant 0.15
gyrA 7520 c.219G>C synonymous_variant 0.15
gyrA 7532 c.231T>G synonymous_variant 0.14
gyrA 7541 c.240C>G synonymous_variant 0.14
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7841 c.540C>T synonymous_variant 0.13
gyrA 7847 c.546G>C synonymous_variant 0.13
gyrA 8285 c.984C>T synonymous_variant 1.0
gyrA 8741 c.1440C>T synonymous_variant 0.98
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9217 p.Asp639Ala missense_variant 0.85
gyrA 9230 c.1929T>C synonymous_variant 0.15
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 760184 c.378A>G synonymous_variant 0.15
rpoB 760235 c.429T>C synonymous_variant 0.12
rpoB 760475 c.669A>G synonymous_variant 0.18
rpoB 760481 c.675G>T synonymous_variant 0.17
rpoB 760484 c.678A>G synonymous_variant 0.17
rpoB 760502 c.696C>G synonymous_variant 0.15
rpoB 760532 c.726T>C synonymous_variant 0.17
rpoB 760547 c.741G>C synonymous_variant 0.14
rpoB 762065 c.2259T>C synonymous_variant 0.14
rpoB 762114 p.Ile770Val missense_variant 0.14
rpoB 762122 c.2316C>T synonymous_variant 0.14
rpoB 762149 c.2343G>C synonymous_variant 0.15
rpoB 762156 p.Val784Ile missense_variant 0.15
rpoB 762167 c.2361T>C synonymous_variant 0.15
rpoB 762185 c.2379G>C synonymous_variant 0.13
rpoB 762218 c.2412T>C synonymous_variant 0.14
rpoB 762233 c.2427G>C synonymous_variant 0.13
rpoC 763031 c.-339T>C upstream_gene_variant 0.98
rpoC 763468 c.99G>C synonymous_variant 0.16
rpoC 763486 c.117T>C synonymous_variant 0.15
rpoC 763492 c.123G>C synonymous_variant 0.14
rpoC 763528 c.159G>A synonymous_variant 0.16
rpoC 763531 c.162G>T synonymous_variant 0.14
rpoC 763546 c.177A>G synonymous_variant 0.19
rpoC 763570 c.201G>C synonymous_variant 0.21
rpoC 763594 c.225C>T synonymous_variant 0.24
rpoC 763633 c.264T>C synonymous_variant 0.17
rpoC 763660 c.291T>G synonymous_variant 0.17
rpoC 764371 c.1002G>C synonymous_variant 0.14
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.13
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.15
rpoC 764434 c.1065A>G synonymous_variant 0.17
rpoC 764435 c.1066A>C synonymous_variant 0.19
rpoC 764452 c.1083T>C synonymous_variant 0.17
rpoC 764458 c.1089G>C synonymous_variant 0.17
rpoC 764461 c.1092A>G synonymous_variant 0.17
rpoC 764485 c.1116G>C synonymous_variant 0.14
rpoC 764497 c.1128A>G synonymous_variant 0.14
rpoC 764521 c.1152T>C synonymous_variant 0.16
rpoC 764539 c.1170C>G synonymous_variant 0.18
rpoC 764548 c.1179G>C synonymous_variant 0.14
rpoC 764560 c.1191T>C synonymous_variant 0.15
rpoC 764581 c.1212T>C synonymous_variant 0.14
rpoC 764611 c.1242G>T synonymous_variant 0.22
rpoC 764632 c.1263T>C synonymous_variant 0.27
rpoC 764635 c.1266C>G synonymous_variant 0.17
rpoC 764650 c.1281G>C synonymous_variant 0.22
rpoC 764665 c.1296C>G synonymous_variant 0.19
rpoC 764668 c.1299C>T synonymous_variant 0.17
rpoC 764671 c.1302G>C synonymous_variant 0.19
rpoC 764695 c.1326T>C synonymous_variant 0.17
rpoC 764701 c.1332C>G synonymous_variant 0.17
rpoC 764706 p.Leu446Gln missense_variant 0.17
rpoC 764746 c.1377G>T synonymous_variant 0.24
rpoC 764749 c.1380G>C synonymous_variant 0.13
rpoC 764758 c.1389C>G synonymous_variant 0.24
rpoC 764764 c.1395T>C synonymous_variant 0.22
rpoC 764803 c.1434C>T synonymous_variant 0.18
rpoC 764809 c.1440C>T synonymous_variant 0.17
rpoC 764815 c.1446A>G synonymous_variant 0.14
rpoC 764827 c.1458G>C synonymous_variant 0.14
rpoC 764858 c.1489T>C synonymous_variant 0.16
rpoC 764869 c.1500C>T synonymous_variant 0.14
rpoC 764875 c.1506C>T synonymous_variant 0.15
rpoC 764878 c.1509C>G synonymous_variant 0.16
rpoC 764887 c.1518G>C synonymous_variant 0.16
rpoC 764888 c.1519T>C synonymous_variant 0.19
rpoC 764911 c.1542A>G synonymous_variant 0.2
rpoC 764912 p.Met515Gln missense_variant 0.17
rpoC 764923 c.1554A>G synonymous_variant 0.19
rpoC 764935 c.1566T>C synonymous_variant 0.16
rpoC 767098 c.3729T>C synonymous_variant 0.23
rpoC 767104 c.3735C>G synonymous_variant 0.23
rpoC 767105 p.Asn1246Gln missense_variant 0.22
rpoC 767119 c.3750A>G synonymous_variant 0.27
rpoC 767167 c.3798C>T synonymous_variant 0.18
rpoC 767173 c.3804C>A synonymous_variant 0.16
rpoC 767174 p.Asn1269His missense_variant 0.16
rpoC 767180 p.Ala1271Gln missense_variant 0.19
rpoC 767191 c.3822C>G synonymous_variant 0.18
rpoC 767197 c.3828G>A synonymous_variant 0.15
rpoC 767212 c.3843G>C synonymous_variant 0.15
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775847 c.2634G>T synonymous_variant 0.17
mmpL5 775851 p.Ser877Thr missense_variant 0.17
mmpL5 775856 c.2625T>C synonymous_variant 0.17
mmpL5 775862 c.2619G>C synonymous_variant 0.19
mmpL5 775885 p.Ile866Leu missense_variant 0.18
mmpL5 775889 c.2592C>G synonymous_variant 0.18
mmpL5 775909 p.Leu858Ile missense_variant 0.14
mmpL5 775912 c.2569C>A synonymous_variant 0.13
mmpL5 775916 c.2565T>C synonymous_variant 0.23
mmpL5 775937 c.2544G>C synonymous_variant 0.16
mmpL5 775949 c.2532G>C synonymous_variant 0.24
mmpL5 775955 p.Ile842Val missense_variant 0.17
mmpL5 775961 c.2520C>G synonymous_variant 0.15
mmpL5 775981 p.Leu834Met missense_variant 0.12
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781853 c.294C>T synonymous_variant 0.14
rpsL 781859 c.300T>C synonymous_variant 0.16
rpsL 781868 c.309T>C synonymous_variant 0.14
rpsL 781871 c.312G>C synonymous_variant 0.13
rpsL 781901 c.342C>T synonymous_variant 0.12
rpsL 781916 c.357T>G synonymous_variant 0.12
rplC 800612 c.-197A>G upstream_gene_variant 0.14
rplC 800618 c.-191T>C upstream_gene_variant 0.14
fbiC 1302899 c.-32A>G upstream_gene_variant 1.0
fbiC 1304580 c.1650T>C synonymous_variant 0.18
fbiC 1304613 c.1683T>C synonymous_variant 0.23
fbiC 1304634 c.1704C>G synonymous_variant 0.18
fbiC 1304640 c.1710A>C synonymous_variant 0.19
fbiC 1304646 c.1716T>C synonymous_variant 0.2
fbiC 1304655 c.1725C>T synonymous_variant 0.19
fbiC 1304658 c.1728C>G synonymous_variant 0.17
fbiC 1304671 p.Val581Thr missense_variant 0.16
fbiC 1304675 p.Gly582Asp missense_variant 0.16
fbiC 1304694 c.1764A>C synonymous_variant 0.15
fbiC 1304703 c.1773C>G synonymous_variant 0.14
fbiC 1304715 c.1785G>C synonymous_variant 0.17
fbiC 1304724 c.1794A>G synonymous_variant 0.16
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471979 n.134T>C non_coding_transcript_exon_variant 0.18
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.19
rrs 1472019 n.174G>A non_coding_transcript_exon_variant 0.17
rrs 1472023 n.178G>T non_coding_transcript_exon_variant 0.15
rrs 1472028 n.183A>G non_coding_transcript_exon_variant 0.15
rrs 1472032 n.187G>T non_coding_transcript_exon_variant 0.14
rrs 1472033 n.188A>C non_coding_transcript_exon_variant 0.16
rrs 1472035 n.190G>T non_coding_transcript_exon_variant 0.14
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.14
rrs 1472041 n.196C>G non_coding_transcript_exon_variant 0.14
rrs 1472042 n.197T>G non_coding_transcript_exon_variant 0.14
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.19
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.19
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.17
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.17
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.26
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.2
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.16
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.15
rrs 1472337 n.492C>G non_coding_transcript_exon_variant 0.18
rrs 1472380 n.535G>C non_coding_transcript_exon_variant 0.21
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.27
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.28
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.3
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.23
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.18
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.18
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.22
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.22
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 0.2
rrs 1472674 n.829T>A non_coding_transcript_exon_variant 0.2
rrs 1472675 n.830T>C non_coding_transcript_exon_variant 0.21
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.2
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.19
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.19
rrs 1472686 n.841G>T non_coding_transcript_exon_variant 0.19
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.19
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.18
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.18
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.18
rrs 1472847 n.1002G>T non_coding_transcript_exon_variant 0.12
rrs 1472848 n.1003T>G non_coding_transcript_exon_variant 0.12
rrs 1472858 n.1013G>T non_coding_transcript_exon_variant 0.12
rrs 1472860 n.1015C>A non_coding_transcript_exon_variant 0.12
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.19
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.14
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.14
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.17
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.29
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.17
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.16
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.16
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.15
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.14
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.35
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.33
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.33
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.14
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.14
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.32
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.18
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.36
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.17
rrs 1473317 n.1472G>A non_coding_transcript_exon_variant 0.17
rrl 1473746 n.89T>C non_coding_transcript_exon_variant 0.17
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.17
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.17
rrl 1473836 n.179A>G non_coding_transcript_exon_variant 0.13
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.15
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.15
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.14
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.36
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 0.14
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.22
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.22
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.16
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.16
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.16
rrl 1474498 n.841G>A non_coding_transcript_exon_variant 0.17
rrl 1474505 n.848C>T non_coding_transcript_exon_variant 0.17
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.16
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.16
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.18
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.25
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.22
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.21
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.21
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.15
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.21
rrl 1474662 n.1005C>A non_coding_transcript_exon_variant 0.13
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 0.17
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.17
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.31
rrl 1474714 n.1058delT non_coding_transcript_exon_variant 0.26
rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.26
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.34
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.47
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.35
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.37
rrl 1475108 n.1451C>G non_coding_transcript_exon_variant 0.14
rrl 1475343 n.1686A>G non_coding_transcript_exon_variant 0.16
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.2
rrl 1475358 n.1701T>C non_coding_transcript_exon_variant 0.16
rrl 1475363 n.1706C>T non_coding_transcript_exon_variant 0.19
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.19
rrl 1475378 n.1721A>T non_coding_transcript_exon_variant 0.16
rrl 1475379 n.1722G>C non_coding_transcript_exon_variant 0.15
rrl 1475380 n.1723C>A non_coding_transcript_exon_variant 0.16
rrl 1475387 n.1730C>T non_coding_transcript_exon_variant 0.18
rrl 1475397 n.1740G>T non_coding_transcript_exon_variant 0.15
rrl 1475398 n.1741C>G non_coding_transcript_exon_variant 0.14
rrl 1475399 n.1742T>G non_coding_transcript_exon_variant 0.14
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.17
rrl 1475403 n.1746T>A non_coding_transcript_exon_variant 0.15
rrl 1475404 n.1747A>T non_coding_transcript_exon_variant 0.15
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.19
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.26
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.22
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.21
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.2
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.14
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.14
rrl 1475750 n.2093A>C non_coding_transcript_exon_variant 0.72
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 0.15
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.17
rrl 1475764 n.2107A>C non_coding_transcript_exon_variant 0.15
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.15
rrl 1475775 n.2118G>A non_coding_transcript_exon_variant 0.15
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.27
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.27
rrl 1475995 n.2338G>A non_coding_transcript_exon_variant 0.21
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.17
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.14
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.14
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.17
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.16
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.15
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.18
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.14
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.34
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.26
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.34
rrl 1476251 n.2594T>A non_coding_transcript_exon_variant 0.19
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.18
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.29
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.36
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.38
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.3
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 0.26
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.12
rrl 1476529 n.2872A>G non_coding_transcript_exon_variant 0.21
rrl 1476583 n.2926G>C non_coding_transcript_exon_variant 0.28
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.29
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.27
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.24
rrl 1476674 n.3017T>C non_coding_transcript_exon_variant 0.24
rrl 1476679 n.3022T>C non_coding_transcript_exon_variant 0.24
rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 0.18
rrl 1476692 n.3035T>A non_coding_transcript_exon_variant 0.18
rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 0.18
rpsA 1833697 c.156C>G synonymous_variant 0.17
rpsA 1833727 c.186G>C synonymous_variant 0.18
rpsA 1833733 c.192C>G synonymous_variant 0.15
rpsA 1833734 p.Ala65Ser missense_variant 0.15
rpsA 1833742 c.201A>G synonymous_variant 0.18
rpsA 1833802 c.261A>G synonymous_variant 0.16
rpsA 1833829 c.288A>G synonymous_variant 0.16
rpsA 1833838 c.297G>C synonymous_variant 0.12
rpsA 1833841 c.300C>G synonymous_variant 0.13
rpsA 1833856 c.315A>G synonymous_variant 0.15
rpsA 1833892 c.351G>A synonymous_variant 0.14
rpsA 1833894 p.Ala118Glu missense_variant 0.14
rpsA 1833928 c.387G>C synonymous_variant 0.15
rpsA 1833949 c.408T>C synonymous_variant 0.17
rpsA 1833970 c.429G>C synonymous_variant 0.16
rpsA 1833979 c.438T>C synonymous_variant 0.2
rpsA 1833991 c.450C>A synonymous_variant 0.12
rpsA 1834348 c.807T>C synonymous_variant 0.14
rpsA 1834859 p.Ala440Thr missense_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102193 p.Arg284Trp missense_variant 0.97
ndh 2103173 c.-132delG upstream_gene_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155503 c.609C>T synonymous_variant 1.0
katG 2156025 c.87C>A synonymous_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168011 p.Ser868Arg missense_variant 1.0
PPE35 2168319 p.Thr765Ile missense_variant 1.0
PPE35 2168814 c.1798dupA frameshift_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 1.0
eis 2715125 p.Thr70Ala missense_variant 1.0
Rv2752c 3065988 p.Glu68Asp missense_variant 0.93
ald 3086728 c.-92C>T upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087084 c.266delA frameshift_variant 1.0
Rv3083 3448783 p.Val94Ile missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474427 p.Val141Ile missense_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
rpoA 3877662 c.846C>T synonymous_variant 0.13
rpoA 3877668 c.840A>G synonymous_variant 0.15
rpoA 3877686 c.822A>G synonymous_variant 0.16
rpoA 3877692 c.816G>C synonymous_variant 0.16
rpoA 3877704 c.804G>T synonymous_variant 0.15
rpoA 3878193 c.315T>C synonymous_variant 0.14
rpoA 3878217 c.291A>G synonymous_variant 0.15
rpoA 3878630 c.-124delC upstream_gene_variant 1.0
clpC1 4038403 c.2302T>C synonymous_variant 1.0
clpC1 4039064 c.1641C>T synonymous_variant 0.17
clpC1 4039067 c.1638G>C synonymous_variant 0.17
clpC1 4039073 c.1632C>T synonymous_variant 0.17
clpC1 4039079 c.1626C>G synonymous_variant 0.17
clpC1 4039085 c.1620A>G synonymous_variant 0.18
clpC1 4039091 c.1614G>C synonymous_variant 0.17
clpC1 4039097 c.1608G>C synonymous_variant 0.18
clpC1 4039112 c.1593C>G synonymous_variant 0.17
clpC1 4039121 c.1584T>C synonymous_variant 0.19
clpC1 4039142 c.1563A>G synonymous_variant 0.2
clpC1 4039145 c.1560G>C synonymous_variant 0.2
clpC1 4039169 p.Glu512Asp missense_variant 0.2
clpC1 4039183 c.1522T>C synonymous_variant 0.24
clpC1 4039187 c.1518G>C synonymous_variant 0.22
clpC1 4039208 c.1497C>G synonymous_variant 0.24
clpC1 4039286 c.1419T>C synonymous_variant 0.15
clpC1 4039292 c.1413C>G synonymous_variant 0.17
clpC1 4039295 c.1410A>C synonymous_variant 0.14
clpC1 4039298 c.1407T>C synonymous_variant 0.14
clpC1 4039310 c.1395A>G synonymous_variant 0.15
clpC1 4039313 c.1392C>G synonymous_variant 0.14
clpC1 4039394 c.1311G>C synonymous_variant 0.14
clpC1 4039397 c.1308A>G synonymous_variant 0.13
clpC1 4039409 c.1296T>C synonymous_variant 0.13
clpC1 4039412 c.1293T>G synonymous_variant 0.13
clpC1 4040363 c.342A>T synonymous_variant 0.14
clpC1 4040369 c.336C>G synonymous_variant 0.14
clpC1 4040375 c.330G>C synonymous_variant 0.14
clpC1 4040380 c.325T>C synonymous_variant 0.14
clpC1 4040387 c.318A>G synonymous_variant 0.13
clpC1 4040393 c.312G>C synonymous_variant 0.13
embC 4240671 p.Thr270Ile missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4242970 c.-263C>T upstream_gene_variant 0.95
embC 4242981 p.Met1040Thr missense_variant 0.95
embA 4244220 c.988C>T synonymous_variant 1.0
embB 4246551 p.Asn13Ser missense_variant 1.0
embB 4246864 c.351C>T synonymous_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
aftB 4267858 p.Ile327Val missense_variant 1.0
aftB 4269351 c.-515C>T upstream_gene_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0