ERR4820723
|
Other
|
lineage4.4.1.1
|
None
|
ERR6197041
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR16156188
|
Sensitive
|
lineage4.9
|
None
|
SRR22424787
|
Sensitive
|
lineage4.9
|
None
|
SRR10993944
|
Other
|
La1.6
|
None
|
SRR12708370
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR3675582
|
Other
|
lineage4.9
|
None
|
SRR15014655
|
Other
|
M.canetti;lineage1
|
None
|
ERR926161
|
Sensitive
|
lineage4.9
|
None
|
SRR13199739
|
Other
|
La1.7.1
|
None
|
ERR6359074
|
HR-TB
|
lineage4.9
|
None
|
SRR6046484
|
Other
|
lineage1.2.2.2
|
None
|
ERR4822150
|
Other
|
lineage4.8
|
gb
|
SRR11342688
|
Other
|
lineage4.2.2.2
|
None
|
SRR10869203
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4188213
|
Other
|
La1.8.1
|
None
|
SRR12708411
|
HR-TB
|
lineage1.2.2.2
|
None
|
ERR867540
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18003047
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12708392
|
Other
|
lineage2.2.1
|
None
|
ERR970441
|
RR-TB
|
lineage2.2.1.1
|
None
|
ERR978760
|
RR-TB
|
lineage4.8
|
None
|
SRR7070329
|
Other
|
lineage3
|
None
|
ERR9896153
|
RR-TB
|
lineage4.4.1.1
|
None
|
ERR867523
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR19303917
|
Sensitive
|
lineage2.2.1
|
None
|
ERR485006
|
HR-TB
|
lineage4.9
|
None
|
ERR1063862
|
HR-TB
|
lineage4.9
|
None
|
SRR12062542
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18003012
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5818449
|
MDR-TB
|
lineage4.9
|
None
|
SRR5818462
|
Other
|
lineage4.9
|
None
|
SRR5818466
|
Other
|
lineage4.9
|
None
|
ERR3276144
|
Other
|
lineage3
|
nl
|
SRR6045496
|
Other
|
lineage6.1.3
|
None
|
ERR3283021
|
HR-TB
|
lineage4.9
|
None
|
DRR188519
|
Other
|
lineage4.4.2
|
None
|
SRR7131032
|
Other
|
lineage2.2.1
|
None
|
ERR1063879
|
Sensitive
|
lineage4.9
|
None
|
SRR20969475
|
Other
|
lineage1.2.1.2
|
None
|
SRR6046376
|
Other
|
lineage3
|
None
|
SRR6824684
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR5341267
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR1183054
|
Sensitive
|
lineage4.9
|
None
|
ERR9117788
|
Other
|
lineage3
|
None
|
SRR1792024
|
Other
|
La1.8.1
|
None
|
SRR5007193
|
RR-TB
|
lineage4.1.1.3.1
|
None
|
ERR2229541
|
Other
|
lineage4.8
|
None
|
ERR4816417
|
Other
|
lineage4.9
|
None
|
SRR6257067
|
HR-TB
|
lineage4.2.1
|
None
|
ERR2514430
|
Other
|
lineage3.1.2;lineage4.1.1.3.1
|
None
|
ERR10796593
|
Other
|
lineage4.3
|
None
|
ERR978767
|
RR-TB
|
lineage4.8
|
None
|
SRR18002909
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4769552
|
Sensitive
|
La1.3
|
None
|
SRR26159035
|
Sensitive
|
lineage4.9
|
None
|
SRR5818434
|
Sensitive
|
lineage4.9
|
None
|
SRR5818437
|
RR-TB
|
lineage4.9
|
None
|
SRR19303815
|
Other
|
lineage4.8
|
None
|
ERR5311077
|
Other
|
La1.8.1
|
None
|
SRR11349203
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR971389
|
Sensitive
|
lineage4.9
|
None
|
SRR6046848
|
Other
|
lineage4.6.5
|
None
|
ERR11465232
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR7240350
|
Other
|
La1.8.1
|
None
|
ERR5908229
|
Sensitive
|
lineage4.3.3
|
None
|
ERR2600422
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1002691
|
HR-TB
|
lineage4.2.1
|
None
|
ERR926164
|
Other
|
lineage4.9
|
None
|
SRR14334194
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR867522
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
DRR185024
|
Other
|
lineage2.2.2
|
None
|
ERR4818831
|
Other
|
lineage3
|
None
|
SRR7236330
|
Other
|
La1.8.1
|
None
|
SRR11342696
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR126597
|
HR-TB
|
lineage4.4.1.2
|
None
|
ERR3797047
|
MDR-TB
|
lineage4.9
|
None
|
ERR4769516
|
Sensitive
|
lineage4.9
|
None
|
ERR4817554
|
Other
|
lineage1.1.1
|
None
|
ERR3445487
|
Other
|
La1.7.X-unk4
|
None
|
DRR185000
|
Other
|
lineage1.1.1.1
|
None
|
ERR9285979
|
RR-TB
|
lineage3.1.1
|
None
|
ERR6336794
|
Sensitive
|
lineage1.2.1.2.1
|
None
|
SRR3619841
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18002935
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7240538
|
Other
|
La1.7.1
|
None
|
ERR4831117
|
HR-TB
|
lineage4.9;lineage7
|
None
|
ERR10796578
|
Other
|
lineage2.2.1
|
None
|
SRR18002964
|
Other
|
lineage2.2.1
|
None
|
SRR18002994
|
MDR-TB
|
lineage4.2.2
|
None
|
DRR184903
|
Sensitive
|
lineage2.2.2
|
None
|
SRR18002980
|
Other
|
lineage2.2.1
|
None
|
SRR18003032
|
Other
|
lineage2.2.1
|
None
|
ERR6197029
|
Other
|
lineage4.7
|
None
|
ERR978734_ERR978733_ERR978735
|
RR-TB
|
lineage4.8
|
None
|
SRR18003052
|
Other
|
lineage2.2.1.1
|
None
|
ERR4819011
|
Other
|
lineage3.1.2.1
|
None
|
SRR12199468
|
Sensitive
|
lineage4.9
|
None
|
SRR21675848
|
Other
|
lineage1.1.3.1
|
None
|
SRR1792022
|
Other
|
La1.8.1
|
None
|
ERR9992879
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR9971112
|
Other
|
lineage2.2.1
|
None
|
ERR1023502
|
MDR-TB
|
lineage2;lineage4
|
None
|
ERR323048
|
Sensitive
|
lineage4.9
|
None
|
ERR10796598
|
Other
|
lineage4.9
|
None
|
SRR124451
|
Sensitive
|
lineage2.2.2
|
None
|
SRR18002998
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
DRR034348
|
Other
|
lineage2.2.1
|
None
|
SRR22424851
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR473303
|
Sensitive
|
lineage4.9
|
None
|
ERR6359082
|
Other
|
lineage4.9
|
None
|
ERR212114
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR867573
|
Other
|
lineage4.9
|
None
|
SRR19304035
|
Other
|
lineage4.1.2.1
|
None
|
ERR1034647
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR4815815
|
Sensitive
|
lineage4.9
|
None
|
ERR9117760
|
HR-TB
|
lineage4.3
|
None
|
ERR3324368
|
RR-TB
|
lineage1.1.2;lineage6.2.3
|
None
|
ERR9992784
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR473334
|
HR-TB
|
lineage4.9
|
None
|
ERR4187652
|
Other
|
lineage4.9
|
None
|
ERR4819166
|
Other
|
lineage3
|
gb
|
ERR4769555
|
Sensitive
|
La1.3
|
None
|
SRR14801294
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6046442
|
Other
|
lineage3
|
None
|
SRR7070157
|
Other
|
lineage4.1.1.3.1
|
None
|
ERR6359070
|
Sensitive
|
lineage4.9
|
None
|
SRR18003023
|
Other
|
lineage2.2.1
|
None
|
ERR10762297
|
MDR-TB
|
lineage4.2.1
|
None
|
SAMEA3501067
|
RR-TB
|
lineage4.8
|
None
|
SRR1049582
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR7585400
|
MDR-TB
|
lineage3
|
None
|
SRR7068971
|
Sensitive
|
lineage3
|
None
|
SRR9971046
|
MDR-TB
|
lineage4.8
|
None
|
ERR4769442
|
Sensitive
|
lineage4.9
|
None
|
SRR11342646
|
HR-TB
|
lineage3
|
None
|
ERR181824
|
HR-TB
|
lineage4.9
|
None
|
ERR3804154
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR18003024
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1175491
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR926156
|
Sensitive
|
lineage4.9
|
None
|
ERR9786076
|
Sensitive
|
lineage3
|
None
|
ERR978734
|
RR-TB
|
lineage4.8
|
None
|
SRR1181256
|
Other
|
lineage4.9
|
None
|
SRR11972378
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR12062533
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR12634609
|
MDR-TB
|
lineage3.1.1
|
None
|
SRR9971372
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR4769550
|
Sensitive
|
La1;lineage4.9
|
None
|
SRR1175500
|
Sensitive
|
lineage4.1.1.3;lineage4.9
|
None
|
SRR18002956
|
Other
|
lineage2.2.1
|
None
|
SRR6982141
|
Other
|
lineage4.3.3
|
None
|
SRR7645901
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR216938
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR4972567
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR7069193
|
Other
|
lineage4.3.1.1
|
None
|
SRR10315567
|
HR-TB
|
lineage2.2.1
|
None
|
SAMN02350437
|
MDR-TB
|
lineage4.8
|
None
|
ERR10796572
|
Other
|
lineage4.3.4.1;lineage4.9
|
None
|
ERR6866125
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR1063846
|
HR-TB
|
lineage4.9
|
None
|
ERR4811035
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.5
|
None
|
SRR1184308
|
Sensitive
|
lineage4.9
|
None
|
SRR9970981
|
RR-TB
|
lineage4.3.2.1
|
None
|
ERR6197039
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR18002903
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6789624
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR11342653
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18003007
|
MDR-TB
|
lineage4.5
|
None
|
ERR4818583
|
Other
|
lineage4.3.3
|
None
|
ERR4796351
|
Sensitive
|
lineage4.9
|
None
|
ERR867572
|
Other
|
lineage4.9
|
None
|
SRR11342636
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR18003046
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20969542
|
Other
|
lineage4.4.2
|
None
|
ERR4814639
|
HR-TB
|
lineage4.9
|
None
|
SRR5818586
|
RR-TB
|
lineage4.2.2.2
|
None
|
SRR18002948
|
Other
|
lineage2.2.1
|
None
|
ERR11465235
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR3675509
|
Other
|
lineage4.9
|
None
|
ERR926163
|
Other
|
lineage4.9
|
None
|
SRR5818402
|
Other
|
lineage4.9
|
None
|
ERR1023525
|
HR-TB
|
La1.7;lineage4.9
|
None
|
SRR10869160
|
Sensitive
|
lineage2.2.1.1
|
None
|
SRR6397815
|
Other
|
lineage4.4.1.1
|
None
|
SRR1180319
|
Sensitive
|
lineage4.9
|
None
|
ERR4769436
|
Other
|
La1.3
|
None
|
ERR171142
|
Other
|
lineage3.1.1;lineage4.9
|
None
|
SRR7131145
|
Other
|
lineage4.1.2.1
|
None
|
SRR11342643
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR1063847
|
Sensitive
|
lineage3.1.1
|
None
|
ERR405217
|
Sensitive
|
lineage2.2.1
|
None
|
SRR11342698
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR18002881
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR124453
|
HR-TB
|
lineage2.2.2
|
None
|
ERR6358951
|
Sensitive
|
lineage4.9
|
None
|
ERR4769493
|
Other
|
lineage4.9
|
None
|
ERR978766
|
RR-TB
|
lineage4.8
|
None
|
ERR978767_ERR978765_ERR978766
|
RR-TB
|
lineage4.8
|
None
|
ERR2228899
|
Other
|
lineage4.8
|
None
|
ERR3468488
|
Other
|
La1.8.1
|
None
|
ERR3797062
|
RR-TB
|
lineage4.9
|
None
|
SRR11342685
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR4819546
|
HR-TB
|
lineage3
|
None
|
ERR1063849
|
HR-TB
|
lineage4.9
|
None
|
ERR2228900
|
Other
|
lineage4.8
|
None
|
ERR4820410
|
RR-TB
|
lineage3.1.1
|
None
|
SRR5818425
|
Other
|
lineage4.9
|
None
|
SRR14782405
|
HR-TB
|
lineage4.9
|
None
|
SRR6044904
|
Other
|
lineage3
|
None
|
SRR1180446
|
Other
|
lineage4.9
|
None
|
ERR10796552
|
Sensitive
|
lineage4.3.4.1
|
None
|
ERR6197021
|
MDR-TB
|
lineage4.3.4.2;lineage4.7
|
None
|
ERR6197028
|
Sensitive
|
lineage4.9
|
None
|
SRR1173740
|
Other
|
lineage3;lineage4
|
None
|
ERR10796568
|
Other
|
lineage4.9
|
None
|
ERR10762248
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR1172796
|
Sensitive
|
lineage2.2.1.2
|
None
|
SRR1175512
|
Sensitive
|
lineage4.9
|
None
|
SRR16156697
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1180399
|
Sensitive
|
lineage4.9
|
None
|
ERR911929
|
Other
|
lineage4.8
|
None
|
SRR18002875
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR18002961
|
Other
|
lineage2.2.1
|
None
|
SRR1184329
|
Other
|
lineage4.9
|
None
|
ERR10796553
|
Other
|
lineage4.9
|
None
|
SRR5818398
|
Other
|
lineage4.9
|
None
|
SRR5818409
|
Other
|
lineage4.9
|
None
|
SRR11342647
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR18002988
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18002999
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4819324
|
Other
|
lineage4.8
|
gb
|
SRR11342676
|
HR-TB
|
lineage4.6.2.2
|
None
|
ERR9786164
|
RR-TB
|
lineage4.1.1.3
|
None
|
ERR978735
|
Other
|
lineage4.8
|
None
|
ERR4799513
|
HR-TB
|
lineage2.2
|
None
|
SRR8758877
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR502470
|
RR-TB
|
lineage4.9
|
None
|
ERR970413
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18002906
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2514351
|
Sensitive
|
lineage3
|
gb
|
ERR5311094
|
HR-TB
|
lineage4.9
|
None
|
SRR5341422
|
HR-TB
|
La1.7;lineage4.9;lineage7
|
None
|
SRR1181130
|
Other
|
lineage4.1.1.3
|
None
|
SRR5818408
|
Other
|
lineage4.9
|
None
|
SRR1181351
|
Sensitive
|
lineage4.9
|
None
|
SRR6045384
|
Other
|
lineage4.1.2.1
|
None
|
SRR7645972
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR6824590
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR21469202
|
Other
|
La1.7.1
|
None
|
SRR1792265
|
Other
|
La1.8.1
|
None
|
SRR7131195
|
Other
|
lineage2.2.1
|
None
|
ERR867525
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9971029
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4818110
|
Sensitive
|
lineage4.9
|
None
|
ERR2851356
|
Sensitive
|
lineage4.9
|
None
|
ERR978754
|
RR-TB
|
lineage4.8
|
None
|
ERR4769462
|
Other
|
La1.3
|
None
|
SRR5818452
|
Other
|
lineage4.9
|
None
|
ERR4769514
|
Other
|
La1.3
|
None
|
SRR11662690
|
HR-TB
|
lineage4.9
|
None
|
ERR736831
|
Other
|
lineage4.9
|
None
|
SRR11342664
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMEA3501052
|
RR-TB
|
lineage4.8
|
None
|
ERR4811493
|
HR-TB
|
lineage4.9
|
None
|
SRR19303899
|
Other
|
lineage3
|
None
|
SRR1181402
|
Sensitive
|
lineage4.9
|
None
|
ERR10796636
|
Other
|
lineage4.1.2.1
|
None
|
SRR8600288
|
Other
|
La1.8.1
|
None
|
SAMEA3501046
|
RR-TB
|
lineage4.8
|
None
|
SRR8375622
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR7068927
|
Other
|
lineage1.2.2.2
|
None
|
ERR983241
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21686597
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR5818469
|
Other
|
lineage4.9
|
None
|
SRR5818684
|
Other
|
lineage4.2.2.2
|
None
|
ERR978757
|
RR-TB
|
lineage4.8
|
None
|
SRR11349207
|
RR-TB
|
lineage2.2.1
|
None
|
ERR3275996
|
HR-TB
|
lineage4.3.4.1
|
nl
|
ERR405209
|
Sensitive
|
La1.7;lineage4.9
|
None
|
ERR4819175
|
Other
|
lineage4.1.1.3
|
gb
|
SRR10808730
|
Other
|
lineage4.9
|
None
|
ERR5917985
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5979407
|
Other
|
lineage3
|
None
|
ERR6197025
|
Sensitive
|
lineage4.7
|
None
|
ERR867521
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1173281
|
Other
|
lineage3
|
None
|
DRR184621
|
Sensitive
|
lineage1.1.1.1
|
None
|
ERR1063882
|
Sensitive
|
lineage4.3.4.2
|
None
|
ERR3283055
|
HR-TB
|
lineage4.9
|
None
|
ERR4819462
|
Sensitive
|
lineage4.9
|
None
|
SRR1180355
|
Sensitive
|
lineage4.9
|
None
|
SRR18003002
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR19325518
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR2100067
|
Other
|
lineage4.3.3
|
None
|
SRR6824678
|
RR-TB
|
lineage4.2.2
|
cn
|
SRR7069391
|
Other
|
lineage4.9
|
None
|
ERR3445502
|
Sensitive
|
lineage4.9;lineage7
|
None
|
SRR12420628
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18913742
|
Sensitive
|
lineage3.1.3
|
None
|
SRR18003031
|
HR-TB
|
lineage2.2.1
|
None
|
SRR18003045
|
Other
|
lineage2.2.1
|
None
|
ERR10796599
|
Other
|
lineage4.8
|
None
|
ERR10796597
|
Other
|
lineage4.3.3
|
None
|
ERR926165
|
Sensitive
|
lineage4.9
|
None
|
ERR2513405
|
Other
|
lineage2.2.1
|
None
|
SRR1175474
|
Other
|
lineage4.9
|
None
|
SRR1181214
|
Other
|
lineage4.9
|
None
|
SRR12708406
|
HR-TB
|
lineage2.2.1;lineage4.9
|
None
|
SRR5818389
|
Other
|
lineage4.9
|
None
|
SRR7646018
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR5818422
|
Other
|
lineage4.9
|
None
|
SRR6045217
|
Sensitive
|
lineage4.9
|
None
|
ERR970445
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4819193
|
Other
|
lineage4.2.1
|
None
|
ERR4769495
|
Other
|
La1.3
|
None
|
ERR4769457
|
Other
|
lineage4.9
|
None
|
ERR4769450
|
Other
|
lineage4.9
|
None
|
SRR6896206
|
Sensitive
|
lineage2.2.1
|
None
|
SAMN02380990
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR6359069
|
Sensitive
|
lineage4.9
|
None
|
ERR911930
|
Other
|
lineage4.8
|
None
|
ERR2512423
|
Other
|
lineage4.1.1.3
|
None
|
SRR11349208
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2027290
|
Other
|
lineage3.1.2.1;lineage4.9
|
None
|
SRR6044841
|
Other
|
lineage4.9
|
None
|
ERR2041726
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SAMEA3450033
|
Other
|
lineage4.8
|
None
|
ERR4812763
|
Other
|
lineage2.2.1
|
None
|
ERR4187952
|
Other
|
La1.8.1
|
None
|
SRR18002967
|
HR-TB
|
lineage2.2.1
|
None
|
ERR10796596
|
Other
|
lineage4.9
|
None
|
SRR5818391
|
Other
|
lineage4.9
|
None
|
SRR5818464
|
Other
|
lineage4.9
|
None
|
ERR3283032
|
Other
|
lineage4.9
|
None
|
ERR867541
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR3439489
|
RR-TB
|
La1.8.1
|
None
|
ERR926159
|
Sensitive
|
lineage4.9
|
None
|
SRR13180301
|
HR-TB
|
lineage3
|
None
|
ERR5987263
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4596902
|
MDR-TB
|
lineage3
|
None
|
SRR7070419
|
Other
|
lineage3
|
None
|
SRR1180977
|
Sensitive
|
lineage4.9
|
None
|
SRR5818397
|
Other
|
lineage4.9
|
None
|
SRR5818448
|
Other
|
lineage4.9
|
None
|
SRR1062920
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
ERR323037
|
Other
|
lineage4.9
|
None
|
ERR108471
|
HR-TB
|
lineage4.9
|
None
|
SRR1181349
|
Sensitive
|
lineage4
|
None
|
ERR4814976
|
Other
|
lineage4.9
|
None
|
ERR4820193
|
Other
|
lineage3
|
None
|
SRR13180370
|
Other
|
lineage4.1.4
|
None
|
ERR4819641
|
Other
|
lineage4.6.2.2
|
None
|
ERR926154
|
Sensitive
|
lineage4.9
|
None
|
ERR978747
|
Other
|
lineage4.8
|
None
|
ERR2027230
|
Other
|
lineage4.2.2.2
|
None
|
ERR2027255
|
HR-TB
|
lineage4.4.1.1
|
None
|
SRR11342644
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR1023509
|
Other
|
lineage4.9
|
None
|
SRR11342638
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR7069648
|
Other
|
lineage4.6.2.2
|
None
|
SRR6832644
|
Other
|
lineage4.3.3;lineage4.9
|
None
|
ERR3445501
|
HR-TB
|
La1.7.1;La1.7.X-unk4;lineage7
|
None
|
ERR2886463
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21677886
|
Sensitive
|
lineage4.9
|
None
|
SRR14801720
|
Other
|
lineage4.8
|
None
|
SRR9971065
|
RR-TB
|
lineage2.2.1
|
None
|
SRR7131182
|
Other
|
lineage4.1.2.1
|
None
|
SRR11349201
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR4820075
|
Other
|
lineage4.1.2.1
|
None
|
SRR16058249
|
Sensitive
|
lineage4.2.2.2
|
None
|
SRR4033549
|
Other
|
lineage2.2.2
|
None
|
SRR11349153
|
RR-TB
|
lineage4.1.1.1
|
None
|
SRR7070154
|
Other
|
lineage4.4.1.1
|
None
|
ERR3797046
|
HR-TB
|
lineage4.9
|
None
|
SRR6153231
|
Sensitive
|
lineage4.4.1.2
|
None
|
SRR6397389
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR15315871
|
Sensitive
|
lineage4.9
|
None
|
ERR8665619
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR405194
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR978746
|
RR-TB
|
lineage4.8
|
None
|
ERR4769452
|
Other
|
lineage4.9
|
None
|
ERR8975044
|
Other
|
lineage4.1.1.2
|
None
|
ERR405216
|
Sensitive
|
lineage3.1.1
|
None
|
DRR188816
|
Sensitive
|
lineage4.2.2
|
None
|
ERR1063873
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR037504
|
Other
|
lineage4.9.1
|
None
|
SRR1180413
|
Sensitive
|
lineage4.9
|
None
|
SRR1173185
|
Other
|
lineage4.9
|
None
|
SRR5341315
|
Other
|
La1.7;lineage3;lineage4.9;lineage7
|
None
|
ERR2229147
|
Other
|
lineage4.8
|
None
|
ERR867571
|
Other
|
lineage4.9
|
None
|
ERR978726_ERR978727
|
RR-TB
|
lineage4.8
|
None
|
SRR10808722
|
Sensitive
|
lineage4.8
|
None
|
ERR1023304
|
Sensitive
|
lineage4.8
|
None
|
SRR6982246
|
Sensitive
|
lineage4.1.2;lineage4.9
|
None
|
SRR1181390
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
SRR1196478
|
Other
|
lineage4.9
|
None
|
SRR6785281
|
Other
|
lineage4.2.1.1
|
None
|
SRR5709926
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4815502
|
Other
|
lineage4.1
|
None
|
SRR22251745
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6045621
|
Other
|
lineage4.1.1.3
|
None
|
SRR1792012
|
Other
|
La1.8.1
|
None
|
ERR2041725
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR3283006
|
RR-TB
|
lineage4.9
|
None
|
SRR1915487
|
Other
|
La1.2.BCG
|
None
|
SRR1792011
|
Other
|
La1.8.1
|
None
|
ERR3276155
|
Other
|
lineage4.1.2.1
|
nl
|
SRR11342655
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR2100532
|
Sensitive
|
lineage3
|
None
|
ERR5979454
|
Pre-XDR-TB
|
lineage3
|
None
|
SAMEA3501070
|
RR-TB
|
lineage4.8
|
None
|
SRR5341456
|
Other
|
lineage4.9
|
None
|
SRR18002987
|
Other
|
lineage2.2.1
|
None
|
ERR4820891
|
Sensitive
|
lineage4.9
|
gb
|
SRR20970016
|
Other
|
lineage2.2
|
None
|
ERR10796577
|
Other
|
lineage4.9
|
None
|
SRR12708419
|
Other
|
lineage4.3.3
|
None
|
SRR18002872
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7070134
|
Other
|
lineage3.1.1
|
None
|
SRR1181368
|
Other
|
lineage4.9
|
None
|
SRR7131216
|
Other
|
lineage4.1.2.1
|
None
|
SRR9971122
|
MDR-TB
|
lineage4.8
|
None
|
SRR9971197
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR9971333
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR10796635
|
Other
|
lineage4.8
|
None
|
ERR4818536
|
Other
|
lineage4.9
|
None
|
ERR4769418
|
Other
|
La1.2
|
None
|
ERR4769497
|
Other
|
La1;lineage4.9
|
None
|
SRR13423546
|
Other
|
lineage4.4.2
|
None
|
SRR7755649
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR10796555
|
Other
|
lineage4.1.2.1
|
None
|
ERR10796629
|
Other
|
lineage4.1;lineage4.9
|
None
|
ERR228175
|
Sensitive
|
lineage3
|
None
|
ERR4187800
|
Sensitive
|
La1.8.1
|
None
|
SRR11342671
|
RR-TB
|
lineage4.1.3
|
None
|
SRR11342673
|
RR-TB
|
lineage4.3.4.2
|
None
|
SRR17567917
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR1791725
|
Other
|
La1.8.1
|
None
|
ERR10796632
|
Other
|
lineage4.3.3
|
None
|
ERR017781
|
Other
|
lineage3
|
None
|
ERR038289
|
Other
|
lineage4.3.3
|
None
|
ERR4811101
|
Other
|
lineage4.4.2
|
None
|
ERR736875
|
HR-TB
|
lineage4.9
|
None
|
ERR978694
|
Other
|
lineage4.8
|
None
|
SRR5818388
|
Other
|
lineage4.9
|
None
|
SRR5818470
|
Other
|
lineage4.9
|
None
|
SRR15508556
|
Other
|
lineage4.3.4.1
|
None
|
SRR12420276
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156804
|
Sensitive
|
lineage4.9
|
None
|
SRR11342648
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR11342693
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR11349145
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR4034391
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4769530
|
RR-TB
|
lineage4.9
|
None
|
SRR18002981
|
Other
|
lineage2.2.1
|
None
|
SRR22424778
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR6046343
|
Other
|
lineage2.2.1
|
None
|
SRR6046878
|
Other
|
lineage4.9
|
None
|
SRR7131061
|
Other
|
lineage2.2.1
|
None
|
SRR7131287
|
Other
|
lineage2.2.1.1
|
None
|
ERR2228810
|
Other
|
lineage4.8;lineage4.9
|
None
|
SRR6046141
|
Other
|
lineage4.9
|
None
|
ERR4817398
|
Other
|
lineage3.1.1
|
None
|
SRR1175513
|
Sensitive
|
lineage4.9
|
None
|
SRR1180410
|
Sensitive
|
lineage4.9
|
None
|
SRR7069179
|
Sensitive
|
lineage4.9
|
None
|
SRR18003030
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1063858
|
HR-TB
|
lineage4.9
|
None
|
SRR6982213
|
Sensitive
|
lineage4.3.2.1
|
None
|
SRR5818459
|
Other
|
lineage4.9
|
None
|
SRR18002930
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18002947
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9117732
|
Other
|
lineage1.2.2.2
|
None
|
ERR4596944
|
MDR-TB
|
lineage3.1.1
|
None
|
SRR11349147
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR1175472
|
RR-TB
|
lineage4.3.4.1
|
None
|
SRR14782539
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4816690
|
Other
|
|
None
|
ERR4816762
|
Sensitive
|
lineage4.9
|
None
|
ERR4816856
|
Other
|
lineage4.1.2.1
|
None
|
ERR4816868
|
Other
|
lineage4.4.1.1
|
None
|
SRR9971223
|
Other
|
lineage2.2.1
|
None
|
ERR10796560
|
Other
|
lineage4.9
|
None
|
ERR2027291
|
Sensitive
|
lineage3.1.3
|
None
|
ERR4820151
|
Other
|
lineage4.8
|
None
|
ERR2517074
|
Pre-XDR-TB
|
lineage3
|
gb
|
SRR18715102
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR752229
|
Other
|
lineage4.5
|
None
|
SRR1180406
|
Sensitive
|
lineage4.9
|
None
|
SRR6045359
|
Sensitive
|
lineage4.9
|
None
|
SRR6397733
|
Other
|
lineage4.4.1.2
|
None
|
ERR4808964
|
RR-TB
|
lineage2.2.1
|
None
|
SRR5341373
|
Other
|
lineage4.9
|
None
|
ERR4769439
|
HR-TB
|
lineage4.9
|
None
|
ERR773795
|
Sensitive
|
lineage4.3.4.2
|
None
|
ERR978755
|
RR-TB
|
lineage4.8
|
None
|
SRR1792247
|
Other
|
La1.7.1
|
None
|
SRR3742667
|
Sensitive
|
lineage4.9
|
None
|
ERR4820290
|
Other
|
lineage3
|
None
|
SRR15315797
|
RR-TB
|
lineage2.2.1
|
None
|
ERR911929_ERR911930
|
Other
|
lineage4.8
|
None
|
ERR2027209
|
MDR-TB
|
lineage1.2.1.1
|
None
|
ERR10796565
|
Other
|
lineage4.9
|
None
|
SRR18003004
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR18003009
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR867527
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6197044
|
Other
|
lineage4.9
|
None
|
SRR7070223
|
HR-TB
|
lineage3
|
None
|
ERR978765
|
RR-TB
|
lineage4.8
|
None
|
SRR18002891
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20970047
|
Sensitive
|
lineage4.5
|
None
|
SRR5818395
|
Sensitive
|
lineage4.9
|
None
|
SRR11342658
|
RR-TB
|
lineage4.1.2
|
None
|
SRR11342668
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
SRR11349191
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR22048550
|
Other
|
lineage1.1.3.1
|
None
|
ERR2984782
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR11342684
|
HR-TB
|
lineage4.4.1.1
|
None
|
SRR1180345
|
Other
|
lineage4.9
|
None
|
SRR10315558
|
Sensitive
|
lineage2.2.1
|
None
|
ERR10219876
|
Other
|
lineage4.3.4.2
|
None
|
ERR2600562
|
MDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
SRR11349193
|
RR-TB
|
lineage4.1.2
|
None
|
SRR1175496
|
Sensitive
|
lineage4.9
|
None
|
SRR1792025
|
Other
|
La1.8.1
|
None
|
SRR18003013
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR1140574
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
SRR18002941
|
RR-TB
|
lineage2.2.1
|
None
|
SRR12708399
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR18003042
|
Other
|
lineage2.2.1
|
None
|
ERR405191
|
Sensitive
|
lineage4.9
|
None
|
ERR4816800
|
Other
|
lineage4.8
|
gb
|
SRR1238559
|
Other
|
lineage4.9
|
None
|
ERR867524
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR21239778
|
Sensitive
|
lineage4.3.3
|
None
|
ERR473323
|
HR-TB
|
lineage4.9
|
None
|
SRR1180391
|
Sensitive
|
lineage4.9
|
None
|
SRR1180444
|
Sensitive
|
lineage4.9
|
None
|
SRR5341313
|
Sensitive
|
La1.7;lineage4.9;lineage7
|
None
|
SRR18002974
|
Other
|
lineage2.2.1
|
None
|
SRR3675565
|
Other
|
lineage4
|
None
|
ERR6197023
|
MDR-TB
|
lineage4.3.4.2;lineage4.7
|
None
|
ERR751345
|
Other
|
lineage5.1.1
|
None
|
SRR18002933
|
Other
|
lineage2.2.1
|
None
|
ERR10796628
|
Other
|
lineage4.3.3
|
None
|
ERR5162090
|
RR-TB
|
lineage4.9
|
None
|
SRR5007167
|
RR-TB
|
lineage4.1.1.3.1
|
None
|
SRR11972425
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6045843
|
Other
|
lineage4.2.2.2
|
None
|
SRR6046616
|
Other
|
lineage4.3.1.1
|
None
|
SRR6982239
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR9970980
|
HR-TB
|
lineage4.1.2
|
None
|
ERR036200
|
Sensitive
|
lineage4.1.2
|
None
|
SRR6046208
|
Other
|
lineage4.8
|
None
|
SRR5818394
|
Other
|
lineage4.9
|
None
|
ERR473277
|
HR-TB
|
La3;M.canetti;lineage4.9
|
None
|
SRR6045053
|
Other
|
lineage4
|
None
|
SRR20969708
|
HR-TB
|
lineage2.2
|
None
|
SRR7131229
|
Other
|
lineage4.1.2.1
|
None
|
SRR6046299
|
Other
|
lineage4.3.1;lineage4.9;lineage6
|
None
|
SRR6046577
|
Other
|
lineage4.6.3;lineage4.9
|
None
|
SRR7617847
|
Other
|
La1.8.1
|
None
|
ERR10796626
|
Other
|
lineage4.1.2.1
|
None
|
SRR6824501
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7070461
|
Other
|
lineage3
|
None
|
SRR6046117
|
Other
|
lineage4.9
|
None
|
ERR10796571
|
Other
|
lineage4.9
|
None
|
ERR10796589
|
Other
|
lineage4.9
|
None
|
ERR3806588
|
Other
|
lineage6.1.3
|
None
|
SRR7070320
|
Other
|
lineage4.8
|
None
|
SRR7070592
|
Sensitive
|
lineage4.8
|
None
|
ERR1665404
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5818432
|
MDR-TB
|
lineage4.9
|
None
|
SRR5818456
|
Other
|
lineage4.9
|
None
|
ERR4769427
|
Other
|
La1.2
|
None
|
ERR4872322
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR171135
|
Other
|
lineage2.2.1
|
za
|
ERR867538
|
Other
|
lineage4.2.2.2
|
None
|
SRR5341341
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181237
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
ERR4814763
|
Other
|
lineage2.2.1
|
None
|
ERR11465776
|
Sensitive
|
lineage4.1.1.3
|
None
|
ERR736837
|
Pre-XDR-TB
|
lineage4.9
|
None
|
SRR18003038
|
Other
|
lineage2.2.1
|
None
|
SRR1173421
|
Other
|
lineage4.9
|
None
|
ERR867575
|
Other
|
lineage4.9
|
None
|
SRR12708415
|
HR-TB
|
lineage2.2.1
|
None
|
ERR867555
|
Other
|
lineage3
|
None
|
SRR4033434
|
Sensitive
|
lineage4.3.2.1
|
None
|
SRR7070446
|
Other
|
lineage3
|
None
|
SRR7069946
|
Other
|
lineage4.8
|
None
|
SRR1184114
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
SRR11349194
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5917972
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR4820736
|
Sensitive
|
lineage4.1.2.1
|
gb
|
SRR10869071
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10303325
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7131196
|
Other
|
lineage4.8
|
None
|
SRR2101087
|
Other
|
lineage4.4.2
|
None
|
SRR21658550
|
Other
|
lineage1.1.1
|
None
|
ERR10796620
|
Other
|
lineage4.1.1.1
|
None
|
ERR4769467
|
Sensitive
|
lineage4.9
|
None
|
SRR5818460
|
Other
|
lineage4.9
|
None
|
ERR2446509
|
Other
|
lineage3
|
nl
|
ERR978761_ERR978762_ERR978760
|
RR-TB
|
lineage4.8
|
None
|
SRR19303796
|
Other
|
lineage4.3.3
|
None
|
SRR9971150
|
RR-TB
|
lineage4.8.1
|
None
|
ERR4596904
|
MDR-TB
|
lineage3.1.1
|
None
|
SRR12708407
|
HR-TB
|
lineage4.3.2.1
|
None
|
SRR1175487
|
Sensitive
|
lineage4.9
|
None
|
ERR926160
|
Sensitive
|
lineage4.9
|
None
|
ERR9786276
|
Sensitive
|
lineage4.8
|
None
|
ERR4132460
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA3501065
|
RR-TB
|
lineage4.8
|
None
|
SRR18002984
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR970443
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR5818399
|
Sensitive
|
lineage4.9
|
None
|
ERR2229198
|
Sensitive
|
lineage4.8
|
None
|
ERR192070
|
Sensitive
|
lineage4.9
|
None
|
ERR270777
|
HR-TB
|
lineage4.1.2
|
None
|
ERR3797015
|
HR-TB
|
lineage4.9
|
None
|
ERR405215
|
Sensitive
|
lineage2.2.1
|
None
|
SRR11342686
|
MDR-TB
|
lineage4.8
|
None
|
SRR11342651
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR978748
|
Other
|
lineage4.8
|
None
|
ERR978755_ERR978756_ERR978754_ERR978757
|
RR-TB
|
lineage4.8
|
None
|
SRR5341330
|
Other
|
lineage4.9
|
None
|
SRR1180420
|
Sensitive
|
lineage4.9
|
None
|
SRR11972417
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6046593
|
Other
|
lineage4.9
|
None
|
SRR6824680
|
RR-TB
|
lineage2.2.1
|
cn
|
ERR970449
|
RR-TB
|
lineage4.1.1.3
|
None
|
SRR11342660
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR19303907
|
Other
|
lineage4.8
|
None
|
SRR12708396
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR1180312
|
Sensitive
|
lineage4.9
|
None
|
ERR9786639
|
Sensitive
|
lineage4.8
|
None
|
SRR11462861
|
Other
|
La1.8.1
|
None
|
SRR6044952
|
Other
|
lineage4.9
|
None
|
SRR6045002
|
RR-TB
|
lineage4.9
|
None
|
SRR18911231
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR21240029
|
Sensitive
|
lineage4.3.3
|
None
|
ERR867544
|
Other
|
lineage4.9
|
None
|
ERR867570
|
RR-TB
|
lineage4.9
|
None
|
ERR10796592
|
Other
|
lineage4.9
|
None
|
ERR978727
|
Other
|
lineage4.8
|
None
|
SRR023487
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4815310
|
Other
|
lineage2.2.1;lineage4.9
|
None
|
SRR19303805
|
Sensitive
|
lineage4.8
|
None
|
ERR323044
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
SRR7765062
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR6045010
|
Sensitive
|
lineage4.9
|
None
|
ERR1163055
|
MDR-TB
|
lineage4.8
|
None
|
SRR6045832
|
Other
|
lineage4.9
|
None
|
ERR3275190
|
Other
|
lineage3
|
nl
|
ERR978751
|
Other
|
lineage4.8
|
None
|
ERR4819314
|
Other
|
lineage1.1.1
|
None
|
ERR1815538
|
Other
|
La1.7.1
|
None
|
SAMEA3501063
|
RR-TB
|
lineage4.8
|
None
|
SRR1140712
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR3743401
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181325
|
Sensitive
|
lineage4.9
|
None
|
SRR7645928
|
Other
|
lineage4.7
|
None
|
SRR11871430
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11972300
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5087606
|
Other
|
La1.8.1
|
None
|
ERR176580
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR176827
|
Sensitive
|
lineage1.1.2
|
mw
|
SRR18002874
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755657
|
Other
|
lineage4.8
|
None
|
SRR11349181
|
Other
|
lineage4.1.2
|
None
|
SRR22048536
|
Other
|
lineage4.3.3
|
None
|
ERR978733
|
RR-TB
|
lineage4.8
|
None
|
ERR405190
|
Sensitive
|
lineage4.9
|
None
|
ERR11466514
|
Sensitive
|
lineage4.3.4.1
|
None
|
SRR5818404
|
Other
|
lineage4.9
|
None
|
SRR12708414
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4769417
|
Pre-XDR-TB
|
lineage4.9
|
None
|
SRR7069922
|
Other
|
lineage2.2.1
|
None
|
ERR2228910
|
Other
|
lineage4.8
|
None
|
ERR978746_ERR978747_ERR978748
|
RR-TB
|
lineage4.8
|
None
|
ERR9117812
|
Other
|
lineage4.3.1.1
|
None
|
SRR1175127
|
Other
|
lineage2.2.1.2
|
None
|
SRR5818414
|
Other
|
lineage4.9
|
None
|
SRR6044875
|
Sensitive
|
lineage4.9
|
None
|
SRR9971200
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR10869318
|
Sensitive
|
lineage2.2.1
|
None
|
SRR11294512
|
Other
|
La1.8.1
|
None
|
SRR7069931
|
Other
|
lineage4.2.2.2
|
None
|
SRR1181215
|
Sensitive
|
lineage4.4.1.1.1
|
None
|
SRR12142339
|
HR-TB
|
lineage2.2.1
|
None
|
SRR11342640
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1180440
|
Other
|
lineage4.9
|
None
|
ERR4809333
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR736805
|
Sensitive
|
lineage2.2.1
|
None
|
ERR9787336
|
RR-TB
|
lineage6.1.3
|
None
|
SRR19303819
|
Other
|
lineage4.6.2.2
|
None
|
ERR4769428
|
Sensitive
|
La1.3
|
None
|
SRR21469200
|
Other
|
La1.7.1
|
None
|
SRR5818446
|
Other
|
lineage4.9
|
None
|
SRR7131236
|
Other
|
lineage4.3.4.2
|
None
|
SRR1173719
|
Other
|
lineage4.9
|
None
|
SRR10869254
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4586795
|
Other
|
La1.8.1
|
None
|
ERR019855
|
Other
|
lineage3
|
None
|
ERR4822138
|
Other
|
lineage4.1.2.1
|
None
|
SRR18002995
|
Other
|
lineage4.4.2
|
None
|
ERR3283033
|
Sensitive
|
lineage4.9
|
None
|
ERR9117827
|
Other
|
lineage1.2.2.2
|
None
|
ERR4769554
|
RR-TB
|
lineage4.9
|
None
|
SRR11342669
|
Other
|
lineage4.8
|
None
|
ERR4815022
|
Other
|
lineage3.1.2.1
|
None
|
ERR10796564
|
Other
|
lineage4.3.3
|
None
|
ERR978726
|
RR-TB
|
lineage4.8
|
None
|
SRR12708413
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR6046210
|
Other
|
lineage4.9
|
None
|
SRR5153091
|
HR-TB
|
lineage4.3.3
|
None
|
ERR4188247
|
HR-TB
|
lineage4.9
|
None
|
SRR5341432
|
Sensitive
|
La1.7;lineage4.9;lineage7
|
None
|
ERR502525
|
Sensitive
|
lineage6.2.1
|
gh
|
ERR7801175
|
HR-TB
|
lineage4.6.5
|
None
|
SRR7131123
|
Other
|
lineage4.8
|
None
|
SAMEA3501073
|
RR-TB
|
lineage4.8
|
None
|
SRR7645899
|
Other
|
lineage2.2.1
|
None
|
ERR323108
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR10796633
|
Other
|
lineage4.3.4.2
|
None
|
SRR7069835
|
Other
|
lineage2.2.1
|
None
|
SRR7131161
|
Other
|
lineage4.8
|
None
|
SRR3618864
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA3501015
|
Other
|
lineage4.8
|
None
|
ERR867526
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20969731
|
Other
|
lineage2.2.1
|
None
|
SRR6045548
|
Sensitive
|
lineage4.9
|
None
|
ERR473279
|
Other
|
lineage4.9
|
None
|
ERR4818050
|
Sensitive
|
lineage4.6.2.2
|
None
|
ERR4769408
|
Other
|
La1.3
|
None
|
ERR176741
|
Other
|
lineage4.9
|
None
|
SRR5818435
|
Sensitive
|
lineage4.9
|
None
|
ERR867569
|
Other
|
lineage4.9
|
None
|
SRR11342642
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR2027257
|
Other
|
lineage4.1.2.1
|
None
|
ERR4819579
|
HR-TB
|
lineage4.3.3
|
None
|
ERR3275941
|
RR-TB
|
lineage4.3
|
nl
|
SRR16156832
|
RR-TB
|
lineage2.2;lineage4
|
None
|
SRR12708371
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR13180363
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR3601585
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR19304115
|
Other
|
lineage4.1.2.1
|
None
|
ERR4815550
|
Other
|
lineage2.2;lineage4.9
|
None
|
SRR5341408
|
Sensitive
|
lineage3
|
None
|
SRR5341293
|
Sensitive
|
lineage4.9
|
None
|
ERR216965
|
Sensitive
|
lineage4.9
|
None
|
ERR4817434
|
Other
|
lineage3
|
None
|
SRR6045613
|
Other
|
lineage3.1.3
|
None
|
SRR7755645
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7131121
|
Other
|
lineage4.3.3
|
None
|
SRR7131147
|
Other
|
lineage4.1.2.1
|
None
|
ERR2228838
|
Other
|
lineage4.8
|
None
|
ERR4769508
|
RR-TB
|
lineage4.9
|
None
|
SRR7645927
|
Other
|
lineage4.8
|
None
|
ERR1873401
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR10315579
|
Other
|
lineage2.2.1.1
|
None
|
SRR16156775
|
Other
|
lineage4.9
|
None
|
ERR867567
|
RR-TB
|
lineage3
|
None
|
ERR9786447
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR7236233
|
Other
|
La1.8.1
|
None
|
ERR9787033
|
Sensitive
|
lineage6.1.2
|
None
|
ERR978762
|
Other
|
lineage4.8
|
None
|
SRR18002976
|
Other
|
lineage2.2.1
|
None
|
SRR14782054
|
Other
|
lineage4.9
|
None
|
SRR5818647
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR4818561
|
Sensitive
|
lineage4.9
|
None
|
ERR3283030
|
HR-TB
|
lineage4.9
|
None
|
SRR16627752
|
RR-TB
|
lineage4.4
|
None
|
SRR12882374
|
Sensitive
|
lineage3.1.1
|
None
|
ERR5087596
|
Other
|
La1.8.1
|
None
|
SRR7069082
|
Other
|
lineage4.1.2.1
|
None
|
SRR15276982
|
XDR-TB
|
lineage3
|
None
|
ERR6197043
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR7240033
|
Other
|
La1.2;La1.8.1
|
None
|
SRR19303818
|
Other
|
lineage4.3.4.2
|
None
|
ERR3797019
|
Other
|
La1.8.1
|
None
|
SRR5818386
|
Other
|
lineage4.9
|
None
|
ERR867554
|
Other
|
lineage4.3.4.1
|
None
|
SRR6152980
|
HR-TB
|
lineage4.8
|
ca
|
ERR4816967
|
Other
|
lineage5
|
None
|
ERR4817915
|
Other
|
lineage4.9
|
None
|
SRR124452
|
Sensitive
|
lineage2.2.2;lineage4.9
|
None
|
SRR12062493
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR5163959
|
Other
|
lineage4.9
|
None
|
SRR6855695
|
Sensitive
|
lineage4.8
|
None
|
ERR2503533
|
Other
|
lineage4.1.2.1
|
fi
|
ERR10796591
|
Other
|
lineage4.9
|
None
|
SRR5818411
|
RR-TB
|
lineage4.9
|
None
|
SRR5818423
|
RR-TB
|
lineage4.9
|
None
|
ERR6197026
|
Other
|
lineage4.9
|
None
|
ERR3445504
|
Other
|
lineage4.9;lineage6.1.3
|
None
|
ERR926155
|
Sensitive
|
lineage4.9
|
None
|
ERR4798823
|
HR-TB
|
lineage4
|
None
|
ERR4816322
|
Other
|
lineage4.9
|
None
|
SRR21240055
|
Other
|
lineage4.1.2.1
|
None
|
DRR184617
|
HR-TB
|
lineage2.2.1.1
|
None
|
ERR10762275
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR10762495
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR926157
|
Sensitive
|
lineage4.9
|
None
|
SRR1049677
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
SRR11342662
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1175506
|
Sensitive
|
lineage4.9
|
None
|
SRR1180250
|
Other
|
lineage4.9
|
None
|
ERR978750
|
RR-TB
|
lineage4.8
|
None
|
ERR2513082
|
Other
|
lineage4.1.2.1
|
gb
|
SRR18549032
|
HR-TB
|
lineage2.2.1.2;lineage7
|
None
|
SRR7131149
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR10430377
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4769444
|
HR-TB
|
lineage4.9
|
None
|
ERR1199132
|
Sensitive
|
lineage4.6.1.1
|
None
|
ERR3283040
|
HR-TB
|
lineage4.9
|
None
|
SRR7645906
|
Other
|
lineage2.2.1
|
None
|
ERR3797029
|
Other
|
lineage4.9
|
None
|
SRR5007204
|
Other
|
lineage4.1.2.1
|
None
|
SRR11342680
|
Other
|
lineage4.8
|
None
|
ERR1023494
|
Sensitive
|
lineage3
|
None
|
ERR4815780
|
MDR-TB
|
lineage4.1.3
|
None
|
SRR9971114
|
Other
|
lineage2.2.1
|
None
|
SRR5007161
|
RR-TB
|
lineage4.1.1.3.1;lineage4.9
|
None
|
SRR10993951
|
RR-TB
|
La1.6
|
None
|
SRR1181403
|
Other
|
lineage4.9
|
None
|
ERR978761
|
Other
|
lineage4.8
|
None
|
SRR7236399
|
Other
|
La1.8.1
|
None
|
ERR867542
|
HR-TB
|
lineage4.2.1.1;lineage4.3.3
|
None
|
SRR18003015
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2513382
|
RR-TB
|
lineage4.1.1.3
|
None
|
ERR4815783
|
Other
|
lineage4.1.2.1
|
gb
|
SRR1184012
|
Other
|
lineage4.1.1.3
|
None
|
ERR4819357
|
Sensitive
|
lineage4.9
|
None
|
SRR7069347
|
Other
|
lineage4.1.2.1
|
None
|
SRR12708409
|
HR-TB
|
lineage4.3.3
|
None
|
SRR023450
|
RR-TB
|
lineage2.2.1
|
None
|
ERR736817
|
HR-TB
|
lineage4.3.4
|
None
|
ERR867568
|
Other
|
lineage2.2.1;lineage4
|
None
|
SRR1049676
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
SRR1172807
|
Sensitive
|
lineage4.9
|
None
|
ERR773806
|
Sensitive
|
lineage2.2.1
|
None
|
ERR036207
|
Other
|
lineage4.3;lineage4.9
|
None
|
SRR11342649
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3797080
|
Sensitive
|
lineage4.9
|
None
|
ERR10762318
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4812495
|
Other
|
lineage4.1.2.1
|
pe
|
SRR1180300
|
Sensitive
|
lineage4.9
|
None
|
SRR1180375
|
Sensitive
|
lineage4.9
|
None
|
SRR3619764
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR19303820
|
RR-TB
|
lineage4.8
|
None
|
ERR2515230
|
Sensitive
|
lineage4.8
|
None
|
SRR6046440
|
Other
|
lineage3.1.2.2
|
None
|
ERR3797067
|
Other
|
La1.8.1
|
None
|
SRR21240239
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR21727760
|
Other
|
lineage2.2.1
|
None
|
SRR14801325
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR978694_ERR978693
|
Other
|
lineage4.8
|
None
|
SRR6046839
|
Other
|
lineage4.9
|
None
|
ERR5987447
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3675265
|
Other
|
lineage4
|
None
|
SRR1180946
|
Sensitive
|
lineage2;lineage4.9
|
None
|
ERR2229436
|
Other
|
lineage4.8
|
None
|
SRR22424765
|
HR-TB
|
lineage4.8
|
None
|
ERR9119733
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172717
|
Sensitive
|
lineage4.9
|
None
|
ERR8774355
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13180246
|
HR-TB
|
lineage4.8
|
None
|
SRR5535933
|
Other
|
lineage4.9
|
None
|
ERR978756
|
Other
|
lineage4.8
|
None
|
DRR184982
|
Other
|
lineage2.2.1
|
None
|
SRR7755655
|
Other
|
lineage4.1.2.1
|
None
|
SRR15316595
|
RR-TB
|
lineage4.4.2
|
None
|
SRR22175249
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1792478
|
HR-TB
|
La1.7.1
|
None
|
SRR5341400
|
Sensitive
|
lineage4.9
|
None
|
SRR7069766
|
Other
|
lineage4.1.2.1
|
None
|
SRR7069800
|
Other
|
lineage3.1.2.1
|
None
|
SRR18002876
|
MDR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR7240476
|
Other
|
La1.8.1
|
None
|
ERR4817667
|
HR-TB
|
lineage4.8
|
None
|
SRR7755654
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR5007163
|
Other
|
lineage3;lineage4.9
|
None
|
ERR7801176
|
RR-TB
|
lineage4.6.5
|
None
|
ERR10796634
|
Other
|
lineage4.7
|
None
|
SRR1173385
|
Sensitive
|
lineage4.9
|
None
|
SRR18909918
|
Other
|
lineage2.2.1.1
|
None
|
SRR7131237
|
Other
|
lineage2.2.1
|
None
|
SRR11342687
|
RR-TB
|
lineage4.2.2.2
|
None
|
ERR978752
|
Other
|
lineage4.8
|
None
|
SRR5818385
|
Other
|
lineage4.9
|
None
|
ERR987765
|
Sensitive
|
lineage4.6.1.1
|
None
|
SRR5818400
|
Other
|
lineage4.9
|
None
|
SRR6044983
|
Other
|
lineage3.1.1
|
None
|
ERR926162
|
Sensitive
|
lineage4.9
|
None
|
ERR4769553
|
Sensitive
|
lineage4.9
|
None
|
ERR736848
|
Other
|
lineage4.9
|
None
|
SRR7070369
|
Other
|
lineage1.2.2.2
|
None
|
SRR18002907
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1873555
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR502523
|
Other
|
lineage6.3.1
|
None
|
SRR12708418
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1184021
|
Sensitive
|
lineage4.9
|
None
|
ERR3275866
|
Other
|
lineage4.1.2.1
|
nl
|
SRR18002963
|
Other
|
lineage2.2.1
|
None
|
ERR067712
|
Sensitive
|
lineage4.9
|
None
|
SRR7131152
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6045603
|
Other
|
lineage4.1.1.3
|
None
|
ERR4799025
|
Other
|
lineage4.8
|
None
|
SRR6046492
|
Other
|
lineage4.9
|
None
|
ERR4800231
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR1035138
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR6359066
|
HR-TB
|
lineage4.9
|
None
|
ERR4816964
|
Sensitive
|
lineage4.9
|
None
|
SRR11342691
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR978750_ERR978752_ERR978751
|
RR-TB
|
lineage4.8
|
None
|
SRR18002937
|
Other
|
lineage2.2.1
|
None
|
ERR2446566
|
Other
|
lineage4.9
|
None
|
SRR19304094
|
Other
|
lineage6.1.2
|
None
|
ERR4769471
|
Other
|
La1.3
|
None
|
ERR4769433
|
RR-TB
|
lineage4.9
|
None
|
SRR6896532
|
Sensitive
|
lineage4.9
|
None
|
SRR3675230
|
Other
|
lineage3;lineage4
|
None
|
ERR4811708
|
HR-TB
|
lineage4
|
None
|
SRR10315751
|
MDR-TB
|
lineage4.8
|
None
|
SRR1062880
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR5818436
|
Sensitive
|
lineage4.9
|
None
|
SRR6045347
|
Other
|
lineage4.9
|
None
|
SRR7240148
|
Other
|
La1.8.1
|
None
|
SRR19303949
|
Other
|
lineage4.3.3
|
None
|
ERR126603
|
Sensitive
|
lineage4.3.3
|
None
|
SRR7070293
|
Other
|
lineage4.8
|
None
|
SRR5818458
|
Other
|
lineage4.9
|
None
|
SRR19304104
|
Other
|
lineage4.8
|
None
|
SRR5818426
|
Other
|
lineage4.9
|
None
|
SRR1181283
|
Sensitive
|
lineage4.9
|
None
|
ERR5087846
|
Other
|
La1.8.1
|
None
|
ERR4816852
|
Other
|
lineage4.9
|
None
|
ERR4830888
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6045516
|
Other
|
lineage3.1.1
|
None
|
ERR4819051
|
Sensitive
|
lineage4.9
|
None
|
SRR6824331
|
MDR-TB
|
lineage4.4.2
|
cn
|
ERR978693
|
Other
|
lineage4.8
|
None
|
ERR4816548
|
HR-TB
|
lineage4.5
|
None
|
ERR4812328
|
Other
|
lineage4.3.3
|
pe
|
SRR13888750
|
Other
|
La2
|
None
|
ERR926158
|
Sensitive
|
lineage4.9
|
None
|