TB-Profiler result

Run: ERR3468488
Summary

Run ID: ERR3468488

Sample name:

Date: 01-04-2023 02:15:32

Number of reads: 389699

Percentage reads mapped: 35.69

Strain: La1.8.1

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
La1 M.bovis None None 1.0
La1.8 M.bovis None None 1.0
La1.8.1 M.bovis None None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761196 p.Leu464Met missense_variant 0.29 rifampicin
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.8 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.83 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.82 kanamycin, capreomycin, aminoglycosides, amikacin
pncA 2289073 p.His57Asp missense_variant 1.0 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5752 c.513G>A synonymous_variant 1.0
gyrA 6406 c.-896C>T upstream_gene_variant 1.0
gyrB 6446 p.Ala403Ser missense_variant 1.0
gyrB 6998 p.Arg587Ser missense_variant 0.15
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8048 c.747C>A synonymous_variant 1.0
gyrA 8285 c.984C>T synonymous_variant 1.0
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9217 p.Asp639Ala missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491382 p.Glu200Asp missense_variant 0.4
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 759994 p.Arg63His missense_variant 0.33
rpoB 760007 c.201C>A synonymous_variant 0.33
rpoB 760631 c.825G>A synonymous_variant 0.2
rpoB 760920 p.Leu372Ile missense_variant 0.23
rpoB 760925 c.1119T>C synonymous_variant 0.23
rpoB 760926 p.Thr374Ala missense_variant 0.23
rpoB 760940 c.1134G>C synonymous_variant 0.25
rpoB 760944 p.Gln380Glu missense_variant 0.25
rpoB 760953 p.Ile383Val missense_variant 0.25
rpoB 760958 c.1152G>C synonymous_variant 0.25
rpoB 760959 p.Val385Thr missense_variant 0.25
rpoB 760965 p.Met387Leu missense_variant 0.25
rpoB 760970 c.1164G>C synonymous_variant 0.27
rpoB 760973 c.1167G>C synonymous_variant 0.25
rpoB 760982 c.1176G>C synonymous_variant 0.31
rpoB 760985 c.1179G>T synonymous_variant 0.21
rpoB 760991 c.1185G>C synonymous_variant 0.29
rpoB 760997 c.1191G>C synonymous_variant 0.13
rpoB 761015 c.1209G>C synonymous_variant 0.5
rpoB 761018 c.1212G>A synonymous_variant 0.48
rpoB 761027 c.1221A>G synonymous_variant 0.54
rpoB 761036 c.1230G>C synonymous_variant 0.45
rpoB 761037 c.1231T>C synonymous_variant 0.5
rpoB 761051 c.1245G>C synonymous_variant 0.48
rpoB 761057 c.1251G>C synonymous_variant 0.54
rpoB 761084 c.1278C>A synonymous_variant 0.55
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.55
rpoB 761096 c.1290G>C synonymous_variant 0.45
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.55
rpoB 761102 c.1296A>G synonymous_variant 0.57
rpoB 761126 c.1320G>C synonymous_variant 0.55
rpoB 761132 c.1326G>C synonymous_variant 0.55
rpoB 761133 c.1327T>C synonymous_variant 0.57
rpoB 761150 c.1344A>C synonymous_variant 0.62
rpoB 761156 c.1350G>C synonymous_variant 0.6
rpoB 761165 c.1359G>C synonymous_variant 0.5
rpoB 761180 c.1374A>C synonymous_variant 0.43
rpoB 761186 p.Glu460Asp missense_variant 0.36
rpoB 761195 c.1389G>C synonymous_variant 0.29
rpoB 761201 c.1395G>A synonymous_variant 0.15
rpoB 761207 c.1401C>T synonymous_variant 0.25
rpoB 761222 c.1416G>C synonymous_variant 0.17
rpoB 761231 c.1425C>A synonymous_variant 0.25
rpoB 761234 c.1428G>T synonymous_variant 0.17
rpoB 761243 c.1437G>C synonymous_variant 0.21
rpoC 762827 c.-543G>C upstream_gene_variant 0.25
rpoC 762831 c.-539_-538delAGinsTC upstream_gene_variant 0.29
rpoB 762849 p.Tyr1015Asp missense_variant 0.33
rpoB 762855 p.Val1017Ile missense_variant 0.33
rpoB 762858 p.Thr1018Ser missense_variant 0.44
rpoC 762863 c.-507T>C upstream_gene_variant 0.44
rpoB 762879 p.Met1025Leu missense_variant 0.3
rpoC 762887 c.-483G>C upstream_gene_variant 0.3
rpoC 762917 c.-453C>G upstream_gene_variant 0.17
rpoC 762923 c.-447C>G upstream_gene_variant 0.23
rpoC 762926 c.-444C>G upstream_gene_variant 0.15
rpoC 762929 c.-441G>C upstream_gene_variant 0.22
rpoC 762938 c.-432G>C upstream_gene_variant 0.15
rpoC 762947 c.-423C>G upstream_gene_variant 0.45
rpoC 762962 c.-408C>T upstream_gene_variant 0.46
rpoC 762971 c.-399G>A upstream_gene_variant 0.15
rpoC 762989 c.-381G>C upstream_gene_variant 0.33
rpoC 762995 c.-375G>T upstream_gene_variant 0.27
rpoC 763004 c.-366G>A upstream_gene_variant 0.25
rpoB 763005 p.Cys1067Val missense_variant 0.25
rpoB 763014 p.Met1070Leu missense_variant 0.25
rpoB 763017 p.Gln1071Glu missense_variant 0.25
rpoC 763028 c.-342T>C upstream_gene_variant 0.23
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763040 c.-330C>G upstream_gene_variant 0.23
rpoC 763049 c.-321G>A upstream_gene_variant 0.27
rpoC 763052 c.-318G>C upstream_gene_variant 0.27
rpoC 763053 c.-317T>C upstream_gene_variant 0.27
rpoC 763067 c.-303C>G upstream_gene_variant 0.33
rpoC 763070 c.-300T>C upstream_gene_variant 0.25
rpoB 763075 p.Thr1090Ile missense_variant 0.25
rpoB 763077 p.Val1091His missense_variant 0.25
rpoC 763082 c.-288C>A upstream_gene_variant 0.25
rpoC 763103 c.-267G>C upstream_gene_variant 0.2
rpoC 763465 c.96G>A synonymous_variant 0.29
rpoC 763468 c.99G>C synonymous_variant 0.38
rpoC 763486 c.117T>C synonymous_variant 0.42
rpoC 763492 c.123G>C synonymous_variant 0.46
rpoC 763507 c.138G>C synonymous_variant 0.5
rpoC 763528 c.159G>C synonymous_variant 0.42
rpoC 763531 c.162G>T synonymous_variant 0.15
rpoC 763532 p.Thr55Ser missense_variant 0.4
rpoC 763537 c.168C>T synonymous_variant 0.2
rpoC 763546 c.177A>G synonymous_variant 0.42
rpoC 763558 c.189C>T synonymous_variant 0.28
rpoC 763570 c.201G>C synonymous_variant 0.38
rpoC 763594 c.225C>T synonymous_variant 0.27
rpoC 763600 c.231C>G synonymous_variant 0.23
rpoC 763603 c.234C>T synonymous_variant 0.19
rpoC 763609 c.240C>T synonymous_variant 0.19
rpoC 763615 c.246G>C synonymous_variant 0.41
rpoC 763630 c.261G>C synonymous_variant 0.37
rpoC 763633 c.264T>C synonymous_variant 0.16
rpoC 763636 c.267T>C synonymous_variant 0.2
rpoC 763642 c.273G>C synonymous_variant 0.32
rpoC 763660 c.291T>G synonymous_variant 0.13
rpoC 763666 c.297G>C synonymous_variant 0.13
rpoC 763675 c.306C>G synonymous_variant 0.12
rpoC 763696 c.327T>C synonymous_variant 0.12
rpoC 763699 c.330G>T synonymous_variant 0.25
rpoC 763708 c.339G>C synonymous_variant 0.2
rpoC 763714 c.345G>C synonymous_variant 0.23
rpoC 763717 c.348T>C synonymous_variant 0.23
rpoC 763720 c.351G>C synonymous_variant 0.13
rpoC 763732 c.363C>T synonymous_variant 0.21
rpoC 763744 c.375G>C synonymous_variant 0.17
rpoC 763751 p.Ile128Val missense_variant 0.17
rpoC 764503 c.1134G>C synonymous_variant 0.25
rpoC 764509 c.1140G>C synonymous_variant 0.22
rpoC 764521 c.1152T>C synonymous_variant 0.2
rpoC 764536 c.1167G>T synonymous_variant 0.2
rpoC 764539 c.1170C>G synonymous_variant 0.2
rpoC 764548 c.1179G>A synonymous_variant 0.27
rpoC 764566 c.1197C>G synonymous_variant 0.31
rpoC 764572 c.1203G>C synonymous_variant 0.31
rpoC 764575 c.1206T>G synonymous_variant 0.25
rpoC 764576 c.1207_1208delTCinsAG synonymous_variant 0.23
rpoC 764581 c.1212T>C synonymous_variant 0.23
rpoC 764582 p.Leu405Met missense_variant 0.23
rpoC 764602 c.1233C>T synonymous_variant 0.43
rpoC 764605 c.1236G>T synonymous_variant 0.43
rpoC 764611 c.1242G>T synonymous_variant 0.4
rpoC 764620 c.1251G>C synonymous_variant 0.5
rpoC 764632 c.1263T>C synonymous_variant 0.56
rpoC 764650 c.1281G>T synonymous_variant 0.55
rpoC 764662 c.1293G>C synonymous_variant 0.67
rpoC 764677 c.1308C>G synonymous_variant 0.62
rpoC 764695 c.1326T>C synonymous_variant 0.47
rpoC 764706 p.Leu446Gln missense_variant 0.58
rpoC 764722 c.1353G>C synonymous_variant 0.65
rpoC 764746 c.1377G>C synonymous_variant 0.68
rpoC 764752 c.1383G>T synonymous_variant 0.48
rpoC 764764 c.1395T>C synonymous_variant 0.64
rpoC 764767 c.1398G>C synonymous_variant 0.44
rpoC 764780 c.1411_1413delAGCinsTCG synonymous_variant 0.43
rpoC 764791 c.1422C>T synonymous_variant 0.33
rpoC 764797 c.1428G>C synonymous_variant 0.65
rpoC 764803 c.1434C>T synonymous_variant 0.25
rpoC 764804 p.Gln479Tyr missense_variant 0.53
rpoC 764809 c.1440C>T synonymous_variant 0.29
rpoC 764810 p.Pro481Ala missense_variant 0.12
rpoC 764815 c.1446A>G synonymous_variant 0.59
rpoC 764818 c.1449G>C synonymous_variant 0.25
rpoC 764824 c.1455T>C synonymous_variant 0.53
rpoC 764827 c.1458G>T synonymous_variant 0.4
rpoC 764837 p.Val490Ile missense_variant 0.5
rpoC 764843 p.Ala492Thr missense_variant 0.47
rpoC 764854 c.1485G>C synonymous_variant 0.26
rpoC 764858 c.1489T>C synonymous_variant 0.28
rpoC 764863 c.1494G>C synonymous_variant 0.18
rpoC 764869 c.1500C>T synonymous_variant 0.59
rpoC 764875 c.1506C>T synonymous_variant 0.47
rpoC 764878 c.1509C>G synonymous_variant 0.2
rpoC 764887 c.1518G>C synonymous_variant 0.3
rpoC 764888 c.1519_1521delTTGinsCTC synonymous_variant 0.42
rpoC 764893 c.1524T>C synonymous_variant 0.25
rpoC 764902 c.1533C>G synonymous_variant 0.23
rpoC 764908 c.1539G>A synonymous_variant 0.2
rpoC 764911 c.1542A>G synonymous_variant 0.33
rpoC 764912 p.Met515Gln missense_variant 0.33
rpoC 764917 c.1548G>C synonymous_variant 0.33
rpoC 764920 c.1551G>C synonymous_variant 0.36
rpoC 764923 c.1554A>G synonymous_variant 0.14
rpoC 764935 c.1566T>C synonymous_variant 0.2
rpoC 764941 c.1572G>T synonymous_variant 0.21
rpoC 764948 c.1579T>C synonymous_variant 0.31
rpoC 764958 p.Glu530Gly missense_variant 0.17
rpoC 764962 c.1593G>C synonymous_variant 0.28
rpoC 764968 c.1599T>C synonymous_variant 0.28
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 779004 c.-524G>A upstream_gene_variant 0.13
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781559 c.-1G>A upstream_gene_variant 0.22
rpsL 781572 p.Gln5Asn missense_variant 0.2
rpsL 781595 c.36T>C synonymous_variant 0.2
rpsL 781598 c.39G>C synonymous_variant 0.18
rpsL 781606 p.Ile16Thr missense_variant 0.18
rpsL 781608 p.Ser17Ala missense_variant 0.18
rpsL 781622 c.63C>G synonymous_variant 0.18
rpsL 781625 c.66G>A synonymous_variant 0.18
rpsL 781628 c.69T>C synonymous_variant 0.18
rpsL 781631 c.72G>C synonymous_variant 0.18
rpsL 781655 c.96T>C synonymous_variant 0.22
rpsL 781658 c.99A>G synonymous_variant 0.22
rpsL 781664 c.105C>T synonymous_variant 0.29
rpsL 781682 c.123T>C synonymous_variant 0.22
rpsL 781685 c.126G>C synonymous_variant 0.22
rpsL 781880 c.321C>G synonymous_variant 0.17
rpsL 781889 c.330C>T synonymous_variant 0.15
rpsL 781892 c.333A>G synonymous_variant 0.15
rpsL 781898 c.339A>C synonymous_variant 0.15
rplC 801454 p.Glu216Gln missense_variant 0.83
fbiC 1302899 c.-32A>G upstream_gene_variant 1.0
fbiC 1304566 p.Phe546Leu missense_variant 0.25
fbiC 1304610 c.1680C>G synonymous_variant 0.38
fbiC 1304613 c.1683T>C synonymous_variant 0.38
fbiC 1304619 c.1689G>A synonymous_variant 0.33
fbiC 1304625 c.1695C>T synonymous_variant 0.33
fbiC 1304634 c.1704C>G synonymous_variant 0.33
fbiC 1304640 c.1710A>C synonymous_variant 0.38
fbiC 1304658 c.1728C>G synonymous_variant 0.33
fbiC 1304660 p.Tyr577Phe missense_variant 0.33
fbiC 1304662 p.Ser578Thr missense_variant 0.33
fbiC 1304671 c.1742delT frameshift_variant 0.33
fbiC 1304674 p.Gly582Arg missense_variant 0.33
fbiC 1304677 c.1747_1748insC frameshift_variant 0.33
fbiC 1304691 c.1761G>T synonymous_variant 0.33
fbiC 1304694 c.1764A>G synonymous_variant 0.33
fbiC 1304700 c.1770G>A synonymous_variant 0.33
fbiC 1304703 c.1773C>G synonymous_variant 0.33
fbiC 1304715 c.1785G>C synonymous_variant 0.33
fbiC 1304718 c.1788C>A synonymous_variant 0.33
fbiC 1304724 c.1794A>G synonymous_variant 0.25
fbiC 1304727 c.1797A>G synonymous_variant 0.25
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471878 n.33C>T non_coding_transcript_exon_variant 0.25
rrs 1471935 n.90T>C non_coding_transcript_exon_variant 1.0
rrs 1472023 n.178G>T non_coding_transcript_exon_variant 0.57
rrs 1472028 n.183A>T non_coding_transcript_exon_variant 0.5
rrs 1472030 n.185G>A non_coding_transcript_exon_variant 0.4
rrs 1472033 n.188A>T non_coding_transcript_exon_variant 0.5
rrs 1472040 n.195T>A non_coding_transcript_exon_variant 0.4
rrs 1472045 n.200T>G non_coding_transcript_exon_variant 0.33
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.29
rrs 1472057 n.212C>A non_coding_transcript_exon_variant 0.38
rrs 1472062 n.217G>T non_coding_transcript_exon_variant 0.38
rrs 1472068 n.223T>C non_coding_transcript_exon_variant 0.38
rrs 1472069 n.224G>A non_coding_transcript_exon_variant 0.43
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.38
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.5
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.8
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.8
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.45
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.45
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.91
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.94
rrs 1472225 n.380C>G non_coding_transcript_exon_variant 0.81
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.92
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.67
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.7
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.64
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.7
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.64
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.58
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.58
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.58
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.64
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.57
rrs 1472389 n.544G>A non_coding_transcript_exon_variant 0.27
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.27
rrs 1472414 n.569C>T non_coding_transcript_exon_variant 0.38
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.5
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.4
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.4
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.4
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.4
rrs 1472449 n.604C>A non_coding_transcript_exon_variant 0.4
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 0.36
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.36
rrs 1472456 n.611T>C non_coding_transcript_exon_variant 0.36
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 0.36
rrs 1472463 n.618G>T non_coding_transcript_exon_variant 0.4
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.4
rrs 1472467 n.622G>T non_coding_transcript_exon_variant 0.4
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.44
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.21
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.5
rrs 1472495 n.650C>A non_coding_transcript_exon_variant 0.45
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.57
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.92
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.72
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.73
rrs 1472582 n.737G>T non_coding_transcript_exon_variant 0.67
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.84
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.76
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.95
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.17
rrs 1472673 n.830delT non_coding_transcript_exon_variant 0.8
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.71
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.2
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.91
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.32
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.22
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.22
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.25
rrs 1472837 n.992C>A non_coding_transcript_exon_variant 0.29
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.75
rrs 1472878 n.1033G>T non_coding_transcript_exon_variant 0.75
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.83
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.83
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.83
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.83
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.83
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.84
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.92
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.83
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.84
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.82
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.93
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.83
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.84
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.84
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.85
rrs 1473082 n.1237G>A non_coding_transcript_exon_variant 0.14
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.82
rrs 1473099 n.1254T>G non_coding_transcript_exon_variant 0.14
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.96
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.82
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.96
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.95
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.96
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.81
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.95
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.81
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.15
rrs 1473129 n.1284C>T non_coding_transcript_exon_variant 0.17
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.8
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.78
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.82
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.81
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.94
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.2
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.82
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.72
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.27
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.3
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.38
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.38
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.38
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.5
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.67
rrl 1473814 n.157A>G non_coding_transcript_exon_variant 0.67
rrl 1473815 n.158T>C non_coding_transcript_exon_variant 0.67
rrl 1473830 n.173T>C non_coding_transcript_exon_variant 0.62
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.56
rrl 1473833 n.176_177insT non_coding_transcript_exon_variant 0.75
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.56
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.29
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.67
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.67
rrl 1473887 n.230T>C non_coding_transcript_exon_variant 0.33
rrl 1473888 n.231T>C non_coding_transcript_exon_variant 0.5
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.6
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.6
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.5
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.5
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.33
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.44
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.44
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.33
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.58
rrl 1474202 n.545T>C non_coding_transcript_exon_variant 0.54
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.8
rrl 1474249 n.592G>C non_coding_transcript_exon_variant 0.84
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.75
rrl 1474281 n.624A>G non_coding_transcript_exon_variant 0.76
rrl 1474286 n.629C>A non_coding_transcript_exon_variant 0.76
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.14
rrl 1474311 n.654G>T non_coding_transcript_exon_variant 0.73
rrl 1474316 n.659T>C non_coding_transcript_exon_variant 0.77
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.93
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.93
rrl 1474353 n.696A>T non_coding_transcript_exon_variant 0.96
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.82
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.81
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.97
rrl 1474381 n.724T>A non_coding_transcript_exon_variant 0.87
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.96
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.2
rrl 1474413 n.756A>T non_coding_transcript_exon_variant 0.33
rrl 1474414 n.757C>T non_coding_transcript_exon_variant 0.53
rrl 1474447 n.790G>A non_coding_transcript_exon_variant 0.17
rrl 1474450 n.793T>A non_coding_transcript_exon_variant 1.0
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 1.0
rrl 1474466 n.809G>A non_coding_transcript_exon_variant 0.91
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 1.0
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 1.0
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 1.0
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 1.0
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 1.0
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 1.0
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.95
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.94
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.95
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.95
rrl 1474583 n.926C>T non_coding_transcript_exon_variant 0.97
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 1.0
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 1.0
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.98
rrl 1474638 n.981C>A non_coding_transcript_exon_variant 1.0
rrl 1474639 n.982G>T non_coding_transcript_exon_variant 1.0
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.98
rrl 1474664 n.1007G>A non_coding_transcript_exon_variant 0.98
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 1.0
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 1.0
rrl 1474717 n.1060_1061insGTGAG non_coding_transcript_exon_variant 1.0
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 1.0
rrl 1474723 n.1066G>A non_coding_transcript_exon_variant 0.98
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 1.0
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.98
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 1.0
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.98
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.95
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.95
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.99
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.95
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.98
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.97
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.9
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.97
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 0.14
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.74
rrl 1474869 n.1212G>A non_coding_transcript_exon_variant 0.74
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.84
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.7
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.8
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.71
rrl 1474938 n.1281G>A non_coding_transcript_exon_variant 0.23
rrl 1474946 n.1289C>T non_coding_transcript_exon_variant 0.38
rrl 1475060 n.1404delC non_coding_transcript_exon_variant 0.78
rrl 1475065 n.1408G>A non_coding_transcript_exon_variant 0.78
rrl 1475067 n.1410A>G non_coding_transcript_exon_variant 0.78
rrl 1475068 n.1411A>G non_coding_transcript_exon_variant 0.65
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 0.78
rrl 1475078 n.1421T>C non_coding_transcript_exon_variant 0.65
rrl 1475079 n.1422T>C non_coding_transcript_exon_variant 0.82
rrl 1475081 n.1424C>T non_coding_transcript_exon_variant 0.78
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.75
rrl 1475093 n.1436C>T non_coding_transcript_exon_variant 0.62
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 0.62
rrl 1475108 n.1451C>T non_coding_transcript_exon_variant 0.62
rrl 1475111 n.1454G>A non_coding_transcript_exon_variant 0.62
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.75
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.75
rrl 1475119 n.1462C>T non_coding_transcript_exon_variant 0.65
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 0.65
rrl 1475129 n.1472G>A non_coding_transcript_exon_variant 0.65
rrl 1475163 n.1506T>C non_coding_transcript_exon_variant 0.13
rrl 1475406 n.1749T>G non_coding_transcript_exon_variant 0.33
rrl 1475414 n.1757G>C non_coding_transcript_exon_variant 0.4
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.5
rrl 1475422 n.1765A>G non_coding_transcript_exon_variant 0.5
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.56
rrl 1475443 n.1786G>A non_coding_transcript_exon_variant 0.56
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.5
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.56
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.62
rrl 1475481 n.1824C>T non_coding_transcript_exon_variant 0.62
rrl 1475482 n.1825A>T non_coding_transcript_exon_variant 0.62
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.7
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.7
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.73
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.73
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.17
rrl 1475548 n.1891C>T non_coding_transcript_exon_variant 0.25
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.67
rrl 1475655 n.1998T>G non_coding_transcript_exon_variant 0.67
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.67
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.75
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 0.9
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.98
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.96
rrl 1475869 n.2212C>A non_coding_transcript_exon_variant 0.88
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.86
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.86
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.93
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.84
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.93
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.82
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.79
rrl 1475963 n.2306G>A non_coding_transcript_exon_variant 0.78
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.71
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.76
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.93
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.76
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.93
rrl 1475996 n.2339T>A non_coding_transcript_exon_variant 0.68
rrl 1475997 n.2340A>G non_coding_transcript_exon_variant 0.9
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.73
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.71
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.75
rrl 1476024 n.2367T>G non_coding_transcript_exon_variant 0.67
rrl 1476025 n.2368G>T non_coding_transcript_exon_variant 0.65
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.67
rrl 1476032 n.2375C>G non_coding_transcript_exon_variant 0.23
rrl 1476033 n.2376T>C non_coding_transcript_exon_variant 0.88
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.69
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.91
rrl 1476045 n.2388G>C non_coding_transcript_exon_variant 0.93
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 0.21
rrl 1476047 n.2390G>C non_coding_transcript_exon_variant 0.21
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.9
rrl 1476056 n.2399G>A non_coding_transcript_exon_variant 0.68
rrl 1476058 n.2401T>C non_coding_transcript_exon_variant 0.67
rrl 1476076 n.2419A>G non_coding_transcript_exon_variant 0.48
rrl 1476079 n.2422G>A non_coding_transcript_exon_variant 0.32
rrl 1476080 n.2423T>A non_coding_transcript_exon_variant 0.65
rrl 1476080 n.2423T>C non_coding_transcript_exon_variant 0.57
rrl 1476081 n.2424A>T non_coding_transcript_exon_variant 0.32
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.76
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.44
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.33
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.6
rrl 1476103 n.2446C>A non_coding_transcript_exon_variant 0.39
rrl 1476104 n.2447T>G non_coding_transcript_exon_variant 0.35
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.6
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.57
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 0.6
rrl 1476113 n.2456T>G non_coding_transcript_exon_variant 0.35
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.74
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 0.45
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.76
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.2
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.68
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.83
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.86
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.86
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.83
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.17
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.93
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.91
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.75
rrl 1476251 n.2594T>A non_coding_transcript_exon_variant 0.73
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.91
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.89
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.73
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.91
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.92
rrl 1476308 n.2651G>T non_coding_transcript_exon_variant 0.63
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.26
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.63
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.65
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.74
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.76
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.78
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.94
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.82
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.77
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.73
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.65
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.73
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.59
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.64
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.64
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.64
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.81
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.81
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.66
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.6
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.6
rrl 1476586 n.2929C>T non_coding_transcript_exon_variant 0.2
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.5
rrl 1476596 n.2939C>T non_coding_transcript_exon_variant 0.2
rrl 1476601 n.2944G>A non_coding_transcript_exon_variant 0.22
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.43
rrl 1476613 n.2956G>A non_coding_transcript_exon_variant 0.2
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.5
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.5
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.5
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.38
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.5
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.25
fabG1 1673312 c.-128C>T upstream_gene_variant 0.22
inhA 1673715 c.-487C>G upstream_gene_variant 0.88
rpsA 1833709 c.168C>T synonymous_variant 0.42
rpsA 1833721 c.180A>G synonymous_variant 0.17
rpsA 1833724 c.183C>T synonymous_variant 0.42
rpsA 1833727 c.186G>C synonymous_variant 0.45
rpsA 1833730 c.189C>T synonymous_variant 0.45
rpsA 1833733 c.192C>T synonymous_variant 0.18
rpsA 1833734 p.Ala65Ser missense_variant 0.45
rpsA 1833742 c.201A>G synonymous_variant 0.42
rpsA 1833763 c.222C>T synonymous_variant 0.21
rpsA 1833769 c.228C>G synonymous_variant 0.21
rpsA 1833770 p.Asn77Gly missense_variant 0.36
rpsA 1833775 p.Glu78Asp missense_variant 0.36
rpsA 1833778 c.237C>T synonymous_variant 0.21
rpsA 1833781 c.240T>C synonymous_variant 0.36
rpsA 1833787 c.246C>T synonymous_variant 0.25
rpsA 1833790 c.249T>C synonymous_variant 0.36
rpsA 1833793 c.252C>T synonymous_variant 0.43
rpsA 1833794 p.Glu85Gln missense_variant 0.36
rpsA 1833802 c.261A>G synonymous_variant 0.25
rpsA 1833823 c.282G>A synonymous_variant 0.45
rpsA 1833832 c.291G>A synonymous_variant 0.36
rpsA 1833838 c.297G>T synonymous_variant 0.22
rpsA 1833841 c.300C>G synonymous_variant 0.38
rpsA 1833937 c.396G>A synonymous_variant 0.14
rpsA 1833952 c.411C>T synonymous_variant 0.19
rpsA 1833955 c.414G>C synonymous_variant 0.23
rpsA 1833970 c.429G>T synonymous_variant 0.29
rpsA 1833979 c.438T>C synonymous_variant 0.38
rpsA 1833991 c.450C>A synonymous_variant 0.33
rpsA 1833994 c.453G>C synonymous_variant 0.2
rpsA 1833997 c.456G>C synonymous_variant 0.43
rpsA 1834000 c.459G>C synonymous_variant 0.43
rpsA 1834009 c.468C>T synonymous_variant 0.23
rpsA 1834012 c.471G>C synonymous_variant 0.5
rpsA 1834015 c.474G>C synonymous_variant 0.27
rpsA 1834024 c.483G>C synonymous_variant 0.38
rpsA 1834025 p.Gln162Ala missense_variant 0.5
rpsA 1834030 c.489C>G synonymous_variant 0.62
rpsA 1834039 c.498C>T synonymous_variant 0.38
rpsA 1834040 p.Lys167Gln missense_variant 0.62
rpsA 1834043 p.Glu168Gln missense_variant 0.62
rpsA 1834051 c.510G>A synonymous_variant 0.62
rpsA 1834054 c.513C>G synonymous_variant 0.25
rpsA 1834069 c.528G>C synonymous_variant 0.29
rpsA 1834240 c.699T>C synonymous_variant 0.25
rpsA 1834246 c.705G>T synonymous_variant 0.29
rpsA 1834249 c.708T>C synonymous_variant 0.29
rpsA 1834261 c.720A>G synonymous_variant 0.25
rpsA 1834264 c.723G>C synonymous_variant 0.25
rpsA 1834294 c.753G>T synonymous_variant 0.27
rpsA 1834298 p.Gln253Glu missense_variant 0.3
rpsA 1834306 c.765T>C synonymous_variant 0.3
rpsA 1834307 p.Asp256Gln missense_variant 0.3
rpsA 1834312 c.771G>A synonymous_variant 0.3
rpsA 1834327 c.786G>T synonymous_variant 0.33
rpsA 1834333 p.Asp264Glu missense_variant 0.36
rpsA 1834336 c.795C>T synonymous_variant 0.36
rpsA 1834340 p.Met267Leu missense_variant 0.36
rpsA 1834348 c.807T>C synonymous_variant 0.4
rpsA 1834354 c.813G>C synonymous_variant 0.33
rpsA 1834357 c.816T>C synonymous_variant 0.44
rpsA 1834360 c.819G>C synonymous_variant 0.33
rpsA 1834361 c.820T>C synonymous_variant 0.33
rpsA 1834366 c.825A>G synonymous_variant 0.38
rpsA 1834375 c.834G>T synonymous_variant 0.38
rpsA 1834378 c.837T>G synonymous_variant 0.38
rpsA 1834387 c.846C>T synonymous_variant 0.38
rpsA 1834395 p.Arg285Gln missense_variant 0.25
rpsA 1834397 p.His286Thr missense_variant 0.25
rpsA 1834411 c.870T>C synonymous_variant 0.2
rpsA 1834489 c.948T>A synonymous_variant 0.2
rpsA 1834606 c.1065C>T synonymous_variant 0.29
rpsA 1834612 c.1071G>T synonymous_variant 0.29
rpsA 1834619 c.1078T>C synonymous_variant 0.29
rpsA 1834627 c.1086C>G synonymous_variant 0.29
rpsA 1834774 c.1233C>T synonymous_variant 0.29
rpsA 1834859 p.Ala440Thr missense_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1918395 c.456G>T synonymous_variant 0.14
ndh 2102193 p.Arg284Trp missense_variant 0.29
ndh 2103173 c.-132delG upstream_gene_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155503 c.609C>T synonymous_variant 1.0
katG 2156025 c.87C>A synonymous_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168011 p.Ser868Arg missense_variant 1.0
PPE35 2168319 p.Thr765Ile missense_variant 1.0
PPE35 2168814 c.1798dupA frameshift_variant 1.0
PPE35 2169769 p.Ala282Thr missense_variant 0.2
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2222467 p.Thr233Asn missense_variant 0.25
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 1.0
eis 2715125 p.Thr70Ala missense_variant 1.0
ahpC 2726579 c.387T>C synonymous_variant 0.29
folC 2747020 c.579C>G synonymous_variant 0.25
folC 2747023 c.576C>G synonymous_variant 0.29
folC 2747030 p.Pro190Gln missense_variant 0.29
folC 2747033 p.Ala189Gly missense_variant 0.29
folC 2747037 p.Asn188Asp missense_variant 0.29
folC 2747047 c.552C>G synonymous_variant 0.29
folC 2747059 c.540T>C synonymous_variant 0.22
folC 2747068 p.Met177Leu missense_variant 0.22
folC 2747101 c.498G>T synonymous_variant 0.22
folC 2747104 p.Asp165Glu missense_variant 0.22
folC 2747110 c.489T>C synonymous_variant 0.22
folC 2747113 c.486C>A synonymous_variant 0.22
folC 2747119 c.480C>T synonymous_variant 0.22
folC 2747122 c.477G>C synonymous_variant 0.22
folC 2747131 c.468C>T synonymous_variant 0.22
pepQ 2859782 p.Gln213* stop_gained 0.25
ald 3086728 c.-92C>T upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087084 c.266delA frameshift_variant 1.0
Rv3083 3448783 p.Val94Ile missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474427 p.Val141Ile missense_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
rpoA 3878591 c.-84C>A upstream_gene_variant 0.5
rpoA 3878630 c.-124delC upstream_gene_variant 1.0
clpC1 4038403 c.2302T>C synonymous_variant 1.0
clpC1 4039610 c.1095G>C synonymous_variant 0.33
clpC1 4039640 p.Thr355Ala missense_variant 0.25
clpC1 4039646 p.Glu353Ala missense_variant 0.25
clpC1 4039649 c.1056G>C synonymous_variant 0.22
clpC1 4039652 p.Thr351Ser missense_variant 0.44
clpC1 4039655 c.1050G>C synonymous_variant 0.22
clpC1 4039661 p.Gly348Ala missense_variant 0.44
clpC1 4039664 c.1041G>C synonymous_variant 0.22
clpC1 4039670 p.Val345Ile missense_variant 0.29
clpC1 4039673 c.1032G>C synonymous_variant 0.22
clpC1 4039682 c.1023C>T synonymous_variant 0.3
clpC1 4039685 c.1020C>T synonymous_variant 0.33
clpC1 4039691 c.1014G>C synonymous_variant 0.3
clpC1 4039694 c.1011G>T synonymous_variant 0.38
clpC1 4039697 c.1008C>A synonymous_variant 0.2
clpC1 4039700 c.1005C>T synonymous_variant 0.5
clpC1 4039706 c.999G>A synonymous_variant 0.2
clpC1 4039714 p.Tyr331His missense_variant 0.5
clpC1 4039721 c.984C>T synonymous_variant 0.2
clpC1 4039724 c.981A>G synonymous_variant 0.8
clpC1 4039727 c.978C>T synonymous_variant 0.27
clpC1 4039730 c.975C>G synonymous_variant 0.18
clpC1 4039733 c.972G>T synonymous_variant 0.36
clpC1 4039739 c.966C>T synonymous_variant 0.4
clpC1 4039742 c.963C>T synonymous_variant 0.55
clpC1 4039748 c.957G>C synonymous_variant 0.6
clpC1 4039751 c.954A>G synonymous_variant 0.67
clpC1 4039757 c.948A>G synonymous_variant 0.67
clpC1 4039760 c.945T>C synonymous_variant 0.22
clpC1 4039766 c.939T>C synonymous_variant 0.86
clpC1 4039769 c.936C>T synonymous_variant 0.75
clpC1 4039773 p.Lys311Met missense_variant 0.33
clpC1 4039775 c.930G>C synonymous_variant 0.8
clpC1 4039778 c.927A>G synonymous_variant 0.8
clpC1 4039781 c.924G>C synonymous_variant 0.4
clpC1 4039787 c.918G>C synonymous_variant 0.4
clpC1 4039793 c.912C>G synonymous_variant 0.8
clpC1 4039796 c.909C>T synonymous_variant 0.4
clpC1 4039814 c.891C>G synonymous_variant 0.5
clpC1 4039817 c.888A>C synonymous_variant 0.5
clpC1 4039820 c.885T>C synonymous_variant 0.5
clpC1 4039826 c.879C>G synonymous_variant 0.4
clpC1 4039831 c.874T>C synonymous_variant 0.5
clpC1 4039838 p.Leu289Ile missense_variant 0.33
clpC1 4039850 c.855T>C synonymous_variant 0.57
clpC1 4039865 c.840T>C synonymous_variant 0.5
clpC1 4039875 p.Asn277Arg missense_variant 0.5
clpC1 4039889 c.816G>C synonymous_variant 0.5
clpC1 4039898 c.807C>G synonymous_variant 0.62
clpC1 4039904 c.801A>G synonymous_variant 0.62
clpC1 4039907 c.798G>A synonymous_variant 0.71
clpC1 4039929 c.775_776delAGinsTC synonymous_variant 0.62
clpC1 4039931 c.774T>C synonymous_variant 0.62
clpC1 4039934 c.771G>C synonymous_variant 0.67
clpC1 4039943 c.762G>C synonymous_variant 0.7
clpC1 4039946 c.759A>T synonymous_variant 0.7
clpC1 4039949 c.756G>C synonymous_variant 0.7
clpC1 4039952 c.753T>C synonymous_variant 0.73
clpC1 4039958 c.747G>C synonymous_variant 0.73
clpC1 4039964 c.741C>G synonymous_variant 0.17
clpC1 4039981 p.Leu242Ile missense_variant 0.7
clpC1 4039982 c.723G>C synonymous_variant 0.7
clpC1 4039988 c.717C>G synonymous_variant 0.56
clpC1 4039991 c.714G>C synonymous_variant 0.67
clpC1 4039994 p.Glu237Asp missense_variant 0.5
clpC1 4040001 p.His235Arg missense_variant 0.5
clpC1 4040003 c.702G>C synonymous_variant 0.5
clpC1 4040009 c.696C>G synonymous_variant 0.56
clpC1 4040015 c.690G>C synonymous_variant 0.5
clpC1 4040021 c.684A>C synonymous_variant 0.56
clpC1 4040024 c.681A>G synonymous_variant 0.6
clpC1 4040033 c.672G>C synonymous_variant 0.44
clpC1 4040042 c.663C>T synonymous_variant 0.33
clpC1 4040048 c.657C>T synonymous_variant 0.3
clpC1 4040054 c.651G>A synonymous_variant 0.3
clpC1 4040057 c.648C>T synonymous_variant 0.3
clpC1 4040063 c.642G>C synonymous_variant 0.2
clpC1 4040066 c.639G>C synonymous_variant 0.22
clpC1 4040069 c.636G>C synonymous_variant 0.2
clpC1 4040090 c.615T>C synonymous_variant 0.22
clpC1 4040096 c.609G>C synonymous_variant 0.22
clpC1 4040267 c.438A>G synonymous_variant 0.14
clpC1 4040273 c.432T>C synonymous_variant 0.14
clpC1 4040276 c.429C>G synonymous_variant 0.15
clpC1 4040279 c.426C>G synonymous_variant 0.15
clpC1 4040291 c.414G>C synonymous_variant 0.15
clpC1 4040303 c.402G>C synonymous_variant 0.17
clpC1 4040306 c.399G>T synonymous_variant 0.17
clpC1 4040310 p.Thr132Asn missense_variant 0.17
clpC1 4040312 c.393G>C synonymous_variant 0.17
clpC1 4040315 p.Glu130Asp missense_variant 0.17
clpC1 4040321 c.384C>T synonymous_variant 0.18
clpC1 4040324 c.381G>C synonymous_variant 0.18
clpC1 4040336 c.369G>T synonymous_variant 0.25
clpC1 4040345 c.360C>A synonymous_variant 0.25
clpC1 4040348 c.357G>A synonymous_variant 0.25
clpC1 4040354 c.351A>G synonymous_variant 0.29
clpC1 4040363 c.342A>T synonymous_variant 0.25
clpC1 4040372 c.333C>T synonymous_variant 0.22
clpC1 4040375 c.330G>C synonymous_variant 0.22
clpC1 4040380 c.325T>C synonymous_variant 0.22
clpC1 4040387 c.318A>G synonymous_variant 0.22
clpC1 4040390 c.315C>G synonymous_variant 0.22
clpC1 4040393 c.312G>T synonymous_variant 0.2
clpC1 4040486 c.219G>T synonymous_variant 0.18
clpC1 4040522 c.183T>C synonymous_variant 0.17
clpC1 4040528 c.177G>C synonymous_variant 0.17
clpC1 4040531 c.174T>A synonymous_variant 0.17
clpC1 4040534 c.171A>G synonymous_variant 0.17
clpC1 4040537 c.168G>C synonymous_variant 0.18
clpC1 4040540 c.165G>C synonymous_variant 0.18
clpC1 4040546 c.159G>T synonymous_variant 0.2
clpC1 4040560 c.145C>T synonymous_variant 0.18
clpC1 4040561 c.144A>G synonymous_variant 0.18
clpC1 4040570 c.135C>A synonymous_variant 0.2
clpC1 4040576 c.129C>T synonymous_variant 0.2
embC 4240664 p.Trp268Arg missense_variant 0.2
embC 4240671 p.Thr270Ile missense_variant 1.0
embC 4242642 p.Arg927His missense_variant 1.0
embA 4242970 c.-263C>T upstream_gene_variant 1.0
embA 4243269 p.Ala13Thr missense_variant 0.2
embA 4244220 c.988C>T synonymous_variant 1.0
embB 4246551 p.Asn13Ser missense_variant 1.0
embB 4246567 c.54_55insT frameshift_variant 0.29
embB 4246864 c.351C>T synonymous_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
embB 4248734 p.Arg741Trp missense_variant 1.0
embB 4249747 c.3234C>T synonymous_variant 0.25
aftB 4267167 p.Gln557Pro missense_variant 1.0
aftB 4267277 c.1560G>A synonymous_variant 0.25
aftB 4267858 p.Ile327Val missense_variant 1.0
aftB 4269351 c.-515C>T upstream_gene_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
ethA 4326024 p.Pro484Ser missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0