Rv3596c - c.756G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
110 Sensitive
18 RR-TB
56 HR-TB
44 MDR-TB
9 Pre-XDR-TB
1 XDR-TB
83 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.2.1 | 5 |
| lineage4.9 | 158 |
| lineage2.2.1 | 31 |
| La1.7;lineage4.9 | 3 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.3.3;lineage4.8 | 3 |
| lineage4.1.2.1 | 4 |
| lineage6.1.3 | 1 |
| lineage3.1.2.1 | 1 |
| La1.7.1 | 2 |
| lineage4.4 | 1 |
| lineage2.2.2 | 4 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.8 | 6 |
| lineage3.1 | 1 |
| La3;lineage4.9 | 8 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.2;lineage4.9 | 2 |
| lineage2.2.1;lineage4.9 | 1 |
| La3;lineage4 | 1 |
| 3 | |
| La1.7.X-unk4;lineage4.9 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| La1.8.1 | 3 |
| La1.3 | 1 |
| lineage4.3.4.2.1 | 3 |
| lineage4 | 4 |
| lineage1.1;lineage4.1.3 | 1 |
| lineage4.1.1.2 | 1 |
| lineage3 | 8 |
| lineage1.2.2.2 | 1 |
| lineage4.6.1.2 | 5 |
| lineage5.2 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.1.2 | 2 |
| lineage4.1.1.3 | 4 |
| lineage4.3.4.1 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.4.1.2 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage4.5 | 1 |
| lineage3.1.2.2 | 1 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage2;lineage4 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.3.3 | 3 |
| lineage4.1.1.3.1 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage3.1.3 | 1 |
| lineage4.7 | 1 |
| lineage4.1;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La2;lineage2.2 | 1 |
| La2;lineage4.9 | 2 |
| lineage2.2;lineage4 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 321 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR11349147 | RR-TB | lineage4.3.2.1 | None | ERR751326 | Other | lineage4.9 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR5341303 | Sensitive | lineage4.9 | None | SRR10315466 | RR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002974 | Other | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | ERR1023509 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR29096150 | Other | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR3797086 | Sensitive | lineage4.9 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR28351442 | HR-TB | lineage3.1 | None | ERR363447 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR6044952 | Other | lineage4.9 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR1063896 | Sensitive | None | ERR363498 | Sensitive | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR176741 | Other | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4816100 | Sensitive | lineage1.1;lineage4.1.3 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR4798504 | RR-TB | lineage3 | None | SRR7496471 | Sensitive | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | ERR9896144 | Other | lineage3 | None | SRR6045371 | Other | lineage4.9 | None | SRR6046802 | Other | lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR21469201 | Other | La1.7.1 | None | ERR6866639 | Other | lineage4.9 | None | ERR3468488 | Other | La1.8.1 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR1180446 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR3797065 | RR-TB | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR1173777 | Sensitive | lineage4.9 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR4815556 | RR-TB | lineage3 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | SRR28351444 | MDR-TB | lineage3 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR4817069 | RR-TB | None | SRR5341387 | Other | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR4817915 | Other | lineage4.9 | None | SRR7535082 | Sensitive | lineage4.9 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR1238559 | Other | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR181887 | Other | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4816548 | HR-TB | lineage4.5 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR349299 | Other | lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR4819546 | HR-TB | lineage3 | None | ERR363502 | Other | lineage4.9 | None | DRR185024 | Other | lineage2.2.2 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR987722 | MDR-TB | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR6045555 | Other | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6044875 | Sensitive | lineage4.9 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1180440 | Other | lineage4.9 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR1159378 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR22424765 | HR-TB | lineage4.8 | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR6044780 | Sensitive | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR5341293 | Sensitive | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | DRR184629 | Other | lineage2.2.1 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR2432997 | Other | lineage4.8 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4813263 | MDR-TB | lineage4.8 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR11349186 | MDR-TB | lineage4.3.3 | None |
|---|
