TB-Profiler result

Run: SRR10315551
Summary

Run ID: SRR10315551

Sample name:

Date: 02-04-2023 17:09:29

Number of reads: 3606186

Percentage reads mapped: 61.87

Strain: lineage2.2.1

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 1.0
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 1.0
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6680 c.-622C>T upstream_gene_variant 0.17
gyrA 6700 c.-602T>C upstream_gene_variant 0.2
gyrA 6703 c.-599G>C upstream_gene_variant 0.21
gyrA 6709 c.-593A>G upstream_gene_variant 0.21
gyrA 6712 c.-590G>C upstream_gene_variant 0.21
gyrA 6724 c.-578G>C upstream_gene_variant 0.21
gyrA 6727 c.-575G>C upstream_gene_variant 0.21
gyrA 6730 c.-572A>G upstream_gene_variant 0.21
gyrB 6737 p.Thr500Ala missense_variant 0.21
gyrA 6742 c.-560A>G upstream_gene_variant 0.21
gyrA 6745 c.-557T>G upstream_gene_variant 0.21
gyrB 6749 p.Ala504Ser missense_variant 0.21
gyrA 6760 c.-542G>C upstream_gene_variant 0.21
gyrA 6763 c.-539G>C upstream_gene_variant 0.21
gyrB 6764 p.Leu509Phe missense_variant 0.21
gyrA 6775 c.-527G>C upstream_gene_variant 0.22
gyrA 6793 c.-509T>C upstream_gene_variant 0.22
gyrB 6798 p.Gly520Ala missense_variant 0.21
gyrA 6805 c.-497G>C upstream_gene_variant 0.2
gyrA 6811 c.-491C>T upstream_gene_variant 0.19
gyrA 7081 c.-221T>C upstream_gene_variant 0.13
gyrB 7088 p.Asp617Asn missense_variant 0.13
gyrA 7093 c.-209T>C upstream_gene_variant 0.12
gyrA 7100 c.-202T>C upstream_gene_variant 0.13
gyrA 7123 c.-179C>G upstream_gene_variant 0.16
gyrB 7124 p.Ser629Glu missense_variant 0.16
gyrA 7132 c.-170T>C upstream_gene_variant 0.15
gyrA 7136 c.-166T>C upstream_gene_variant 0.15
gyrA 7141 c.-161T>G upstream_gene_variant 0.14
gyrA 7144 c.-158A>G upstream_gene_variant 0.14
gyrA 7150 c.-152G>C upstream_gene_variant 0.13
gyrA 7153 c.-149G>C upstream_gene_variant 0.13
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8867 c.1566A>G synonymous_variant 0.14
gyrA 8870 c.1569G>C synonymous_variant 0.14
gyrA 8876 c.1575C>T synonymous_variant 0.17
gyrA 8913 p.Lys538Arg missense_variant 0.18
gyrA 8924 c.1623C>T synonymous_variant 0.17
gyrA 8930 c.1629C>T synonymous_variant 0.17
gyrA 8939 c.1638T>C synonymous_variant 0.16
gyrA 8942 c.1641G>C synonymous_variant 0.17
gyrA 8945 c.1644G>T synonymous_variant 0.17
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.17
gyrA 8967 p.Ala556Lys missense_variant 0.19
gyrA 8981 c.1680G>C synonymous_variant 0.23
gyrA 8982 p.Cys561Ser missense_variant 0.23
gyrA 8996 c.1695T>C synonymous_variant 0.25
gyrA 8998 p.Leu566Trp missense_variant 0.24
gyrA 9002 c.1701C>T synonymous_variant 0.24
gyrA 9018 p.Gln573Lys missense_variant 0.21
gyrA 9026 c.1725G>C synonymous_variant 0.16
gyrA 9029 c.1728T>G synonymous_variant 0.16
gyrA 9032 c.1731T>C synonymous_variant 0.16
gyrA 9035 c.1734G>C synonymous_variant 0.16
gyrA 9038 c.1737C>G synonymous_variant 0.16
gyrA 9044 c.1743C>G synonymous_variant 0.15
gyrA 9047 c.1746C>T synonymous_variant 0.16
gyrA 9050 p.Asp583Glu missense_variant 0.16
gyrA 9051 c.1750T>C synonymous_variant 0.16
gyrA 9056 c.1755C>G synonymous_variant 0.16
gyrA 9063 p.Ser588Asn missense_variant 0.15
gyrA 9068 c.1767G>C synonymous_variant 0.16
gyrA 9074 c.1773G>T synonymous_variant 0.15
gyrA 9099 c.1798_1800delTTAinsCTG synonymous_variant 0.13
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575907 p.Ala187Val missense_variant 1.0
mshA 576108 p.Ala254Gly missense_variant 0.26
mshA 576482 p.Val379Leu missense_variant 0.18
ccsA 620625 p.Ile245Met missense_variant 1.0
rpoB 760139 c.333A>C synonymous_variant 0.13
rpoB 760140 p.Pro112Ser missense_variant 0.13
rpoB 760148 p.Asp114Glu missense_variant 0.17
rpoB 760157 c.351A>G synonymous_variant 0.18
rpoB 760172 c.366G>C synonymous_variant 0.21
rpoB 760181 c.375T>G synonymous_variant 0.22
rpoB 760184 c.378A>G synonymous_variant 0.22
rpoB 760185 c.379C>T synonymous_variant 0.22
rpoB 760199 c.393C>G synonymous_variant 0.23
rpoB 760233 c.427_429delAGTinsTCG synonymous_variant 0.2
rpoB 760241 c.435G>C synonymous_variant 0.19
rpoB 760253 c.447T>C synonymous_variant 0.2
rpoB 760265 p.Met153Ile missense_variant 0.2
rpoB 760274 p.Glu156Asp missense_variant 0.2
rpoB 760282 p.Thr159Ser missense_variant 0.17
rpoB 760298 c.492G>C synonymous_variant 0.15
rpoB 760997 c.1191G>C synonymous_variant 0.14
rpoB 761015 c.1209G>C synonymous_variant 0.14
rpoB 761027 c.1221A>C synonymous_variant 0.18
rpoB 761036 c.1230G>C synonymous_variant 0.22
rpoB 761037 c.1231T>C synonymous_variant 0.21
rpoB 761051 c.1245G>T synonymous_variant 0.23
rpoB 761054 c.1248G>C synonymous_variant 0.23
rpoB 761057 c.1251G>C synonymous_variant 0.24
rpoB 761060 c.1254C>G synonymous_variant 0.24
rpoB 761063 c.1257C>G synonymous_variant 0.25
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.3
rpoB 761102 c.1296A>G synonymous_variant 0.3
rpoB 761132 c.1326G>T synonymous_variant 0.33
rpoB 761133 c.1327T>C synonymous_variant 0.33
rpoB 761147 c.1341C>T synonymous_variant 0.28
rpoB 761150 c.1344A>C synonymous_variant 0.26
rpoB 761165 c.1359G>C synonymous_variant 0.19
rpoB 761168 c.1362C>G synonymous_variant 0.18
rpoB 761933 c.2127G>C synonymous_variant 0.18
rpoB 761948 c.2142G>C synonymous_variant 0.18
rpoB 761954 c.2148C>G synonymous_variant 0.22
rpoB 761969 p.Glu721Asp missense_variant 0.25
rpoB 761972 c.2166C>T synonymous_variant 0.25
rpoB 761990 c.2184G>C synonymous_variant 0.27
rpoB 762000 c.2194_2195delTCinsAG synonymous_variant 0.28
rpoB 762003 p.Asn733Gln missense_variant 0.28
rpoB 762008 c.2202C>G synonymous_variant 0.28
rpoB 762011 c.2205G>C synonymous_variant 0.27
rpoB 762014 c.2208C>G synonymous_variant 0.27
rpoB 762017 c.2211A>G synonymous_variant 0.27
rpoB 762053 c.2247T>C synonymous_variant 0.3
rpoB 762062 c.2256T>C synonymous_variant 0.32
rpoB 762065 c.2259T>C synonymous_variant 0.32
rpoB 762080 c.2274G>C synonymous_variant 0.29
rpoB 762086 c.2280G>C synonymous_variant 0.27
rpoB 762101 c.2295C>G synonymous_variant 0.27
rpoB 762114 p.Ile770Val missense_variant 0.26
rpoB 762128 c.2322G>C synonymous_variant 0.29
rpoB 762140 c.2334G>C synonymous_variant 0.3
rpoB 762143 c.2337T>C synonymous_variant 0.31
rpoB 762149 c.2343G>C synonymous_variant 0.33
rpoB 762170 c.2364C>G synonymous_variant 0.35
rpoB 762176 c.2370T>C synonymous_variant 0.35
rpoB 762185 c.2379G>C synonymous_variant 0.36
rpoB 762218 c.2412T>C synonymous_variant 0.34
rpoB 762233 c.2427G>C synonymous_variant 0.31
rpoB 762239 c.2433G>A synonymous_variant 0.29
rpoB 762245 c.2439G>T synonymous_variant 0.28
rpoB 762293 c.2487T>C synonymous_variant 0.16
rpoB 762299 c.2493G>C synonymous_variant 0.14
rpoC 762857 c.-513C>G upstream_gene_variant 0.16
rpoB 762858 p.Thr1018Ser missense_variant 0.16
rpoC 762863 c.-507T>G upstream_gene_variant 0.17
rpoB 762881 p.Met1025Ile missense_variant 0.25
rpoC 762887 c.-483G>T upstream_gene_variant 0.25
rpoC 762917 c.-453C>G upstream_gene_variant 0.27
rpoC 762920 c.-450C>T upstream_gene_variant 0.25
rpoC 762929 c.-441G>T upstream_gene_variant 0.29
rpoC 762959 c.-411G>C upstream_gene_variant 0.34
rpoC 762962 c.-408C>T upstream_gene_variant 0.33
rpoC 762983 c.-387C>T upstream_gene_variant 0.37
rpoC 762989 c.-381G>T upstream_gene_variant 0.37
rpoC 762995 c.-375G>T upstream_gene_variant 0.37
rpoC 763028 c.-342T>C upstream_gene_variant 0.42
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763053 c.-317T>C upstream_gene_variant 0.42
rpoC 763067 c.-303C>G upstream_gene_variant 0.38
rpoC 763070 c.-300T>C upstream_gene_variant 0.38
rpoB 763074 p.Thr1090Val missense_variant 0.38
rpoC 763088 c.-282C>G upstream_gene_variant 0.37
rpoC 763115 c.-255T>C upstream_gene_variant 0.28
rpoC 763130 c.-240G>A upstream_gene_variant 0.26
rpoC 763136 c.-234C>T upstream_gene_variant 0.27
rpoC 763160 c.-210G>C upstream_gene_variant 0.23
rpoC 763166 c.-204A>G upstream_gene_variant 0.18
rpoC 763468 c.99G>C synonymous_variant 0.14
rpoC 763486 c.117T>C synonymous_variant 0.17
rpoC 763492 c.123G>C synonymous_variant 0.22
rpoC 763528 c.159G>A synonymous_variant 0.29
rpoC 763546 c.177A>G synonymous_variant 0.3
rpoC 763570 c.201G>C synonymous_variant 0.33
rpoC 763597 c.228G>A synonymous_variant 0.32
rpoC 763609 c.240C>G synonymous_variant 0.28
rpoC 763619 p.Arg84Lys missense_variant 0.26
rpoC 763633 c.264T>C synonymous_variant 0.29
rpoC 763642 c.273G>C synonymous_variant 0.27
rpoC 763648 c.279C>T synonymous_variant 0.26
rpoC 763660 c.291T>G synonymous_variant 0.24
rpoC 763666 c.297G>A synonymous_variant 0.23
rpoC 763669 c.300C>G synonymous_variant 0.23
rpoC 763702 c.333C>G synonymous_variant 0.24
rpoC 763703 c.334_336delTCGinsAGC synonymous_variant 0.22
rpoC 763709 c.340C>T synonymous_variant 0.24
rpoC 763714 c.345G>C synonymous_variant 0.23
rpoC 763717 c.348T>C synonymous_variant 0.24
rpoC 763723 c.354G>C synonymous_variant 0.24
rpoC 763732 c.363C>G synonymous_variant 0.25
rpoC 763741 c.372C>T synonymous_variant 0.25
rpoC 763744 c.375G>C synonymous_variant 0.25
rpoC 763765 c.396T>C synonymous_variant 0.23
rpoC 763781 p.Ser138Ala missense_variant 0.17
rpoC 763819 c.450G>T synonymous_variant 0.13
rpoC 764239 c.870T>G synonymous_variant 0.15
rpoC 764242 c.873C>T synonymous_variant 0.15
rpoC 764245 c.876C>G synonymous_variant 0.17
rpoC 764254 c.885G>A synonymous_variant 0.22
rpoC 764257 c.888G>C synonymous_variant 0.22
rpoC 764263 c.894G>C synonymous_variant 0.23
rpoC 764266 c.897T>G synonymous_variant 0.23
rpoC 764269 c.900G>C synonymous_variant 0.22
rpoC 764278 c.909A>G synonymous_variant 0.25
rpoC 764284 c.915G>C synonymous_variant 0.27
rpoC 764290 c.921C>T synonymous_variant 0.28
rpoC 764297 p.Met310Leu missense_variant 0.29
rpoC 764320 c.951C>G synonymous_variant 0.32
rpoC 764329 c.960C>T synonymous_variant 0.32
rpoC 764341 c.972G>T synonymous_variant 0.33
rpoC 764344 c.975C>T synonymous_variant 0.34
rpoC 764365 c.996C>T synonymous_variant 0.29
rpoC 764371 c.1002G>C synonymous_variant 0.29
rpoC 764377 c.1008C>G synonymous_variant 0.28
rpoC 764380 c.1011G>C synonymous_variant 0.28
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.27
rpoC 764396 c.1027C>T synonymous_variant 0.26
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.24
rpoC 764410 c.1041G>C synonymous_variant 0.24
rpoC 764428 c.1059G>C synonymous_variant 0.23
rpoC 764431 c.1062G>C synonymous_variant 0.21
rpoC 764434 c.1065A>G synonymous_variant 0.21
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 0.21
rpoC 764449 c.1080G>C synonymous_variant 0.21
rpoC 764455 c.1086G>T synonymous_variant 0.22
rpoC 764458 c.1089G>C synonymous_variant 0.21
rpoC 764461 c.1092A>G synonymous_variant 0.22
rpoC 764470 c.1101C>G synonymous_variant 0.26
rpoC 764497 c.1128A>G synonymous_variant 0.27
rpoC 764500 c.1131C>G synonymous_variant 0.27
rpoC 764506 c.1137C>T synonymous_variant 0.27
rpoC 764509 c.1140G>C synonymous_variant 0.28
rpoC 764521 c.1152T>C synonymous_variant 0.27
rpoC 764524 c.1155C>T synonymous_variant 0.26
rpoC 764527 c.1158C>T synonymous_variant 0.27
rpoC 764536 c.1167G>T synonymous_variant 0.28
rpoC 764539 c.1170C>G synonymous_variant 0.31
rpoC 764548 c.1179G>A synonymous_variant 0.42
rpoC 764554 c.1185C>T synonymous_variant 0.39
rpoC 764560 c.1191T>C synonymous_variant 0.4
rpoC 764566 c.1197C>G synonymous_variant 0.42
rpoC 764575 c.1206T>G synonymous_variant 0.39
rpoC 764576 c.1207_1208delTCinsAG synonymous_variant 0.39
rpoC 764602 c.1233C>T synonymous_variant 0.36
rpoC 764605 c.1236G>T synonymous_variant 0.38
rpoC 764611 c.1242G>T synonymous_variant 0.34
rpoC 764632 c.1263T>C synonymous_variant 0.31
rpoC 764650 c.1281G>T synonymous_variant 0.3
rpoC 764662 c.1293G>C synonymous_variant 0.28
rpoC 764701 c.1332C>G synonymous_variant 0.24
rpoC 764716 c.1347G>C synonymous_variant 0.28
rpoC 764746 c.1377G>T synonymous_variant 0.31
rpoC 764749 c.1380G>C synonymous_variant 0.3
rpoC 764752 c.1383G>C synonymous_variant 0.31
rpoC 764755 c.1386C>T synonymous_variant 0.32
rpoC 764764 p.His465Gln missense_variant 0.35
rpoC 764780 c.1411_1412delAGinsTC synonymous_variant 0.29
rpoC 764791 c.1422C>G synonymous_variant 0.31
rpoC 764803 c.1434C>T synonymous_variant 0.29
rpoC 764809 c.1440C>T synonymous_variant 0.29
rpoC 764824 c.1455T>C synonymous_variant 0.3
rpoC 764827 c.1458G>C synonymous_variant 0.31
rpoC 764858 c.1489T>C synonymous_variant 0.32
rpoC 764869 c.1500C>T synonymous_variant 0.29
rpoC 764872 c.1503A>T synonymous_variant 0.27
rpoC 764875 c.1506C>T synonymous_variant 0.27
rpoC 764887 c.1518G>T synonymous_variant 0.23
rpoC 764888 c.1519T>C synonymous_variant 0.23
rpoC 764893 c.1524T>C synonymous_variant 0.25
rpoC 764908 c.1539G>A synonymous_variant 0.23
rpoC 764911 c.1542A>G synonymous_variant 0.21
rpoC 764912 p.Met515Gln missense_variant 0.21
rpoC 764923 c.1554A>G synonymous_variant 0.23
rpoC 764948 c.1579T>C synonymous_variant 0.26
rpoC 764968 c.1599T>C synonymous_variant 0.31
rpoC 765004 c.1635G>C synonymous_variant 0.26
rpoC 765007 c.1638T>G synonymous_variant 0.25
rpoC 765008 c.1639T>C synonymous_variant 0.25
rpoC 765013 c.1644C>T synonymous_variant 0.24
rpoC 765016 c.1647C>G synonymous_variant 0.24
rpoC 765019 c.1650A>G synonymous_variant 0.24
rpoC 765034 c.1665T>G synonymous_variant 0.25
rpoC 765040 c.1671T>C synonymous_variant 0.23
rpoC 765041 c.1672T>C synonymous_variant 0.23
rpoC 765047 c.1678T>C synonymous_variant 0.23
rpoC 765052 c.1683C>G synonymous_variant 0.24
rpoC 765053 c.1684_1685delTCinsAG synonymous_variant 0.25
rpoC 765076 c.1707A>G synonymous_variant 0.24
rpoC 765079 c.1710T>G synonymous_variant 0.21
rpoC 765082 c.1713G>C synonymous_variant 0.21
rpoC 765089 c.1720T>C synonymous_variant 0.2
rpoC 765103 c.1734G>T synonymous_variant 0.17
rpoC 765874 c.2505G>C synonymous_variant 0.19
rpoC 765875 p.Val836Ile missense_variant 0.19
rpoC 765886 c.2517C>G synonymous_variant 0.19
rpoC 765892 c.2523T>C synonymous_variant 0.21
rpoC 765908 p.Leu847Ala missense_variant 0.22
rpoC 765928 c.2559C>G synonymous_variant 0.21
rpoC 765937 c.2568T>C synonymous_variant 0.23
rpoC 765940 c.2571A>C synonymous_variant 0.23
rpoC 765946 c.2577C>T synonymous_variant 0.23
rpoC 765947 c.2578T>C synonymous_variant 0.22
rpoC 765952 c.2583G>C synonymous_variant 0.22
rpoC 765962 c.2593T>C synonymous_variant 0.22
rpoC 765967 c.2598C>T synonymous_variant 0.22
rpoC 765979 c.2610C>G synonymous_variant 0.2
rpoC 765982 c.2613C>T synonymous_variant 0.18
rpoC 765994 c.2625A>T synonymous_variant 0.15
rpoC 766309 c.2940G>C synonymous_variant 0.14
rpoC 766315 c.2946C>G synonymous_variant 0.14
rpoC 766333 c.2964G>C synonymous_variant 0.23
rpoC 766345 c.2976T>C synonymous_variant 0.24
rpoC 766348 c.2979A>G synonymous_variant 0.24
rpoC 766357 c.2988C>T synonymous_variant 0.24
rpoC 766361 p.Val998Ile missense_variant 0.23
rpoC 766366 c.2997C>G synonymous_variant 0.22
rpoC 766375 c.3006C>G synonymous_variant 0.22
rpoC 766381 c.3012C>T synonymous_variant 0.23
rpoC 766384 c.3015A>G synonymous_variant 0.22
rpoC 766390 c.3021C>T synonymous_variant 0.22
rpoC 766402 c.3033C>G synonymous_variant 0.23
rpoC 766408 c.3039C>T synonymous_variant 0.24
rpoC 766411 c.3042C>G synonymous_variant 0.24
rpoC 766435 p.Glu1022Asp missense_variant 0.2
rpoC 766456 c.3087C>G synonymous_variant 0.17
rpoC 766459 c.3090G>T synonymous_variant 0.16
rpoC 766462 c.3093G>C synonymous_variant 0.16
rpoC 766471 c.3102G>C synonymous_variant 0.14
rpoC 766510 c.3141C>G synonymous_variant 0.16
rpoC 766513 p.Asp1048Glu missense_variant 0.16
rpoC 766517 p.Thr1050Ser missense_variant 0.16
rpoC 766528 c.3159T>G synonymous_variant 0.17
rpoC 766531 c.3162G>C synonymous_variant 0.18
rpoC 766534 c.3165C>G synonymous_variant 0.18
rpoC 766542 p.Gly1058Asp missense_variant 0.19
rpoC 766546 p.Glu1059Asp missense_variant 0.17
rpoC 766549 c.3180G>C synonymous_variant 0.19
rpoC 766570 c.3201T>C synonymous_variant 0.18
rpoC 766573 c.3204T>C synonymous_variant 0.17
rpoC 766582 c.3213C>T synonymous_variant 0.15
rpoC 766583 p.Gly1072Ser missense_variant 0.13
rpoC 766684 c.3315C>G synonymous_variant 0.12
rpoC 766690 c.3321G>C synonymous_variant 0.13
rpoC 766693 c.3324C>T synonymous_variant 0.13
rpoC 766702 c.3333G>C synonymous_variant 0.12
rpoC 766718 p.Asp1117Asn missense_variant 0.13
rpoC 766726 c.3357T>C synonymous_variant 0.14
rpoC 766738 c.3369G>C synonymous_variant 0.16
rpoC 766742 p.Gln1125Met missense_variant 0.16
rpoC 766747 c.3378C>T synonymous_variant 0.16
rpoC 766753 c.3384C>T synonymous_variant 0.16
rpoC 766754 p.Glu1129Gln missense_variant 0.16
rpoC 766763 p.Ile1132Val missense_variant 0.15
rpoC 766774 c.3405T>C synonymous_variant 0.15
rpoC 766775 p.Arg1136Asn missense_variant 0.15
rpoC 766799 p.Ala1144Ser missense_variant 0.15
rpoC 766804 c.3435A>G synonymous_variant 0.16
rpoC 766978 c.3609C>A synonymous_variant 0.13
rpoC 766996 c.3627C>T synonymous_variant 0.19
rpoC 767002 c.3633G>C synonymous_variant 0.21
rpoC 767008 c.3639G>A synonymous_variant 0.23
rpoC 767017 c.3648C>G synonymous_variant 0.24
rpoC 767023 p.Asp1218Glu missense_variant 0.25
rpoC 767033 c.3664_3666delTCGinsAGT synonymous_variant 0.25
rpoC 767059 c.3690T>G synonymous_variant 0.27
rpoC 767062 c.3693C>T synonymous_variant 0.27
rpoC 767065 c.3696G>C synonymous_variant 0.28
rpoC 767074 c.3705T>C synonymous_variant 0.3
rpoC 767080 c.3711G>C synonymous_variant 0.28
rpoC 767087 p.Cys1240Ser missense_variant 0.28
rpoC 767098 c.3729T>C synonymous_variant 0.27
rpoC 767104 c.3735C>G synonymous_variant 0.25
rpoC 767106 p.Asn1246Ile missense_variant 0.24
rpoC 767119 c.3750A>G synonymous_variant 0.2
rpoC 767134 c.3765C>T synonymous_variant 0.15
rpoC 767138 c.3769C>T synonymous_variant 0.14
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776182 p.Asp767Asn missense_variant 1.0
mmpS5 779615 c.-710C>G upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781682 c.123T>C synonymous_variant 0.14
rpsL 781706 c.147T>G synonymous_variant 0.18
rpsL 781709 c.150G>C synonymous_variant 0.18
rpsL 781721 c.162C>T synonymous_variant 0.18
rpsL 781725 p.Lys56Arg missense_variant 0.18
rpsL 781728 c.169T>C synonymous_variant 0.18
rpsL 781733 c.174G>C synonymous_variant 0.18
rpsL 781736 c.177T>C synonymous_variant 0.18
rpsL 781737 p.Gln60Ser missense_variant 0.18
rpsL 781751 c.192G>C synonymous_variant 0.23
rpsL 781754 c.195G>C synonymous_variant 0.24
rpsL 781760 c.201T>C synonymous_variant 0.24
rpsL 781766 c.207C>T synonymous_variant 0.25
rpsL 781772 c.213C>T synonymous_variant 0.28
rpsL 781802 c.243G>C synonymous_variant 0.24
rpsL 781805 c.246G>C synonymous_variant 0.24
rpsL 781814 c.255C>T synonymous_variant 0.23
rpsL 781817 c.258G>T synonymous_variant 0.22
rpsL 781829 c.270G>C synonymous_variant 0.21
rpsL 781832 c.273T>G synonymous_variant 0.2
rpsL 781841 c.282C>T synonymous_variant 0.17
rpsL 781859 c.300T>G synonymous_variant 0.17
rpsL 781865 c.306G>C synonymous_variant 0.16
rpsL 781868 c.309T>C synonymous_variant 0.16
rpsL 781871 c.312G>C synonymous_variant 0.16
rpsL 781884 p.Asn109Asp missense_variant 0.16
rpsL 781892 c.333A>G synonymous_variant 0.12
rplC 800633 c.-176T>C upstream_gene_variant 0.17
rplC 800645 c.-164C>T upstream_gene_variant 0.19
rplC 800648 c.-161A>G upstream_gene_variant 0.19
rplC 800654 c.-155T>C upstream_gene_variant 0.2
rplC 800667 c.-142_-140delTCGinsAGC upstream_gene_variant 0.16
rplC 800672 c.-137G>C upstream_gene_variant 0.16
rplC 800675 c.-134G>A upstream_gene_variant 0.17
rplC 800690 c.-119C>T upstream_gene_variant 0.15
rplC 800693 c.-116A>C upstream_gene_variant 0.15
rplC 800702 c.-107G>A upstream_gene_variant 0.15
rplC 800703 c.-106_-104delTTGinsCTC upstream_gene_variant 0.14
rplC 800715 c.-94A>C upstream_gene_variant 0.14
rplC 800720 c.-89T>C upstream_gene_variant 0.14
rplC 800723 c.-86C>G upstream_gene_variant 0.15
rplC 800735 c.-74C>G upstream_gene_variant 0.14
rplC 800747 c.-62C>G upstream_gene_variant 0.14
Rv1258c 1406760 c.580_581insC frameshift_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.18
rrs 1471929 n.84C>G non_coding_transcript_exon_variant 0.19
rrs 1471930 n.85G>C non_coding_transcript_exon_variant 0.19
rrs 1471931 n.86G>T non_coding_transcript_exon_variant 0.18
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 0.18
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.19
rrs 1471979 n.134T>C non_coding_transcript_exon_variant 0.25
rrs 1471980 n.135G>T non_coding_transcript_exon_variant 0.27
rrs 1471981 n.136C>G non_coding_transcript_exon_variant 0.27
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.3
rrs 1472023 n.178G>T non_coding_transcript_exon_variant 0.17
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.23
rrs 1472041 n.196C>T non_coding_transcript_exon_variant 0.23
rrs 1472042 n.197T>G non_coding_transcript_exon_variant 0.22
rrs 1472044 n.199G>T non_coding_transcript_exon_variant 0.22
rrs 1472055 n.211_212delGC non_coding_transcript_exon_variant 0.17
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.23
rrs 1472067 n.222G>T non_coding_transcript_exon_variant 0.25
rrs 1472068 n.223T>G non_coding_transcript_exon_variant 0.25
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.3
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.32
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.33
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.38
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.37
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.36
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.39
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.45
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.41
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.41
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.4
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.39
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.4
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.37
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.34
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.34
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.33
rrs 1472445 n.601dupT non_coding_transcript_exon_variant 0.33
rrs 1472463 n.618G>A non_coding_transcript_exon_variant 0.38
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.38
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.39
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.43
rrs 1472497 n.652G>A non_coding_transcript_exon_variant 0.43
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.42
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.4
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.45
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 0.44
rrs 1472674 n.829T>C non_coding_transcript_exon_variant 0.44
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.44
rrs 1472680 n.835C>T non_coding_transcript_exon_variant 0.45
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.45
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.45
rrs 1472685 n.840G>A non_coding_transcript_exon_variant 0.45
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.45
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.51
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 0.49
rrs 1472841 n.996G>A non_coding_transcript_exon_variant 0.5
rrs 1472848 n.1003T>G non_coding_transcript_exon_variant 0.47
rrs 1472859 n.1014G>T non_coding_transcript_exon_variant 0.45
rrs 1472873 n.1028C>T non_coding_transcript_exon_variant 0.39
rrs 1472874 n.1029C>T non_coding_transcript_exon_variant 0.38
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.39
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.41
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.34
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.33
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.33
rrs 1472960 n.1115G>A non_coding_transcript_exon_variant 0.33
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.37
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.37
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.37
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.36
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.36
rrs 1472986 n.1141C>T non_coding_transcript_exon_variant 0.34
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.34
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.34
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.34
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.5
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.49
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.47
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.46
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.46
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.47
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.46
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.54
rrl 1473743 n.86C>T non_coding_transcript_exon_variant 0.16
rrl 1473750 n.93C>A non_coding_transcript_exon_variant 0.16
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.17
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.18
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.18
rrl 1473768 n.111A>G non_coding_transcript_exon_variant 0.18
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.21
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.26
rrl 1473811 n.154C>A non_coding_transcript_exon_variant 0.26
rrl 1473812 n.155G>C non_coding_transcript_exon_variant 0.26
rrl 1473814 n.157A>C non_coding_transcript_exon_variant 0.26
rrl 1473815 n.158T>A non_coding_transcript_exon_variant 0.26
rrl 1473816 n.159C>G non_coding_transcript_exon_variant 0.26
rrl 1473822 n.165A>G non_coding_transcript_exon_variant 0.27
rrl 1473835 n.179delA non_coding_transcript_exon_variant 0.3
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.33
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.33
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.28
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.21
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.21
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.19
rrl 1473922 n.265A>G non_coding_transcript_exon_variant 0.14
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.14
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 0.12
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.16
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.18
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.21
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.21
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.21
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.21
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.21
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.28
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.27
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.28
rrl 1474264 n.607T>G non_coding_transcript_exon_variant 0.22
rrl 1474265 n.608G>A non_coding_transcript_exon_variant 0.2
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.2
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.2
rrl 1474496 n.839C>T non_coding_transcript_exon_variant 0.3
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.29
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.3
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.31
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.4
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.38
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.38
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.38
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.39
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.45
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.4
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.39
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.39
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.39
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.4
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 0.46
rrl 1474717 n.1060_1061insGTGAG non_coding_transcript_exon_variant 0.45
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.51
rrl 1474740 n.1083G>C non_coding_transcript_exon_variant 0.49
rrl 1474747 n.1090C>G non_coding_transcript_exon_variant 0.5
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.49
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.48
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.48
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.54
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.52
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.51
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.51
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.51
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.5
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 0.29
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.29
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.28
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.21
rrl 1475059 n.1404_1405delCA non_coding_transcript_exon_variant 0.23
rrl 1475064 n.1407G>A non_coding_transcript_exon_variant 0.22
rrl 1475067 n.1410_1411insG non_coding_transcript_exon_variant 0.21
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 0.2
rrl 1475079 n.1422T>C non_coding_transcript_exon_variant 0.2
rrl 1475080 n.1423G>T non_coding_transcript_exon_variant 0.2
rrl 1475081 n.1424C>G non_coding_transcript_exon_variant 0.2
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.25
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.34
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.35
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.27
rrl 1475201 n.1544G>C non_coding_transcript_exon_variant 0.27
rrl 1475202 n.1545G>C non_coding_transcript_exon_variant 0.27
rrl 1475209 n.1552G>A non_coding_transcript_exon_variant 0.28
rrl 1475212 n.1555A>C non_coding_transcript_exon_variant 0.28
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.28
rrl 1475221 n.1564C>T non_coding_transcript_exon_variant 0.28
rrl 1475222 n.1565G>T non_coding_transcript_exon_variant 0.28
rrl 1475246 n.1589C>G non_coding_transcript_exon_variant 0.18
rrl 1475307 n.1650T>G non_coding_transcript_exon_variant 0.12
rrl 1475443 n.1786G>C non_coding_transcript_exon_variant 0.14
rrl 1475444 n.1787G>A non_coding_transcript_exon_variant 0.13
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.19
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.19
rrl 1475475 n.1818C>T non_coding_transcript_exon_variant 0.19
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.2
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.2
rrl 1475481 n.1824C>G non_coding_transcript_exon_variant 0.21
rrl 1475482 n.1825A>G non_coding_transcript_exon_variant 0.21
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.21
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.24
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.23
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.23
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.22
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.22
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.24
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.26
rrl 1475607 n.1950A>C non_coding_transcript_exon_variant 0.23
rrl 1475609 n.1952C>G non_coding_transcript_exon_variant 0.23
rrl 1475614 n.1957A>C non_coding_transcript_exon_variant 0.22
rrl 1475615 n.1958C>G non_coding_transcript_exon_variant 0.22
rrl 1475616 n.1959A>G non_coding_transcript_exon_variant 0.21
rrl 1475627 n.1970G>C non_coding_transcript_exon_variant 0.21
rrl 1475628 n.1971G>T non_coding_transcript_exon_variant 0.21
rrl 1475633 n.1976G>T non_coding_transcript_exon_variant 0.21
rrl 1475636 n.1979A>T non_coding_transcript_exon_variant 0.21
rrl 1475637 n.1980T>G non_coding_transcript_exon_variant 0.2
rrl 1475638 n.1981C>T non_coding_transcript_exon_variant 0.2
rrl 1475639 n.1982C>G non_coding_transcript_exon_variant 0.2
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.21
rrl 1475655 n.1998T>A non_coding_transcript_exon_variant 0.23
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.25
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.44
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.39
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.38
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.38
rrl 1475764 n.2107A>C non_coding_transcript_exon_variant 0.38
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.39
rrl 1475769 n.2113_2114insCG non_coding_transcript_exon_variant 0.39
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.44
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.46
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.46
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.46
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.46
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.46
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.46
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.46
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.46
rrl 1476029 n.2373_2377delACCTC non_coding_transcript_exon_variant 0.4
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.52
rrl 1476088 n.2431A>T non_coding_transcript_exon_variant 0.54
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.57
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.54
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.56
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.58
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.64
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.62
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.62
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.65
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.64
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.65
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.64
rrl 1476251 n.2594T>G non_coding_transcript_exon_variant 0.61
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.63
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.63
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.64
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.62
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.62
rrl 1476300 n.2643G>A non_coding_transcript_exon_variant 0.61
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.61
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.57
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.54
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.44
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.44
rrl 1476608 n.2951C>T non_coding_transcript_exon_variant 0.37
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.33
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.28
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.19
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.2
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.19
rpsA 1833586 c.45C>T synonymous_variant 0.14
rpsA 1833589 c.48A>C synonymous_variant 0.14
rpsA 1833595 c.54T>G synonymous_variant 0.14
rpsA 1833596 p.Ser19Ala missense_variant 0.14
rpsA 1833616 c.75A>C synonymous_variant 0.15
rpsA 1833619 c.78A>C synonymous_variant 0.15
rpsA 1833623 p.Lys28Ser missense_variant 0.15
rpsA 1833658 c.117C>G synonymous_variant 0.21
rpsA 1833664 c.123C>A synonymous_variant 0.22
rpsA 1833676 c.135A>G synonymous_variant 0.22
rpsA 1833679 c.138G>C synonymous_variant 0.21
rpsA 1833682 c.141C>T synonymous_variant 0.21
rpsA 1833694 c.153G>T synonymous_variant 0.22
rpsA 1833697 c.156C>G synonymous_variant 0.21
rpsA 1833709 c.168C>T synonymous_variant 0.21
rpsA 1833727 c.186G>C synonymous_variant 0.19
rpsA 1833733 c.192C>T synonymous_variant 0.19
rpsA 1833734 p.Ala65Ser missense_variant 0.19
rpsA 1833739 c.198C>T synonymous_variant 0.19
rpsA 1833748 c.207C>G synonymous_variant 0.2
rpsA 1833763 c.222C>G synonymous_variant 0.21
rpsA 1833781 c.240T>C synonymous_variant 0.18
rpsA 1833782 p.Ser81Asn missense_variant 0.18
rpsA 1833802 c.261A>G synonymous_variant 0.22
rpsA 1833811 c.270G>C synonymous_variant 0.22
rpsA 1833829 c.288A>G synonymous_variant 0.28
rpsA 1833832 c.291G>A synonymous_variant 0.29
rpsA 1833838 c.297G>C synonymous_variant 0.3
rpsA 1833841 c.300C>G synonymous_variant 0.29
rpsA 1833847 c.306C>G synonymous_variant 0.3
rpsA 1833856 c.315A>G synonymous_variant 0.31
rpsA 1833862 c.321G>A synonymous_variant 0.31
rpsA 1833874 c.333T>C synonymous_variant 0.35
rpsA 1833894 p.Ala118Glu missense_variant 0.35
rpsA 1833928 c.387G>C synonymous_variant 0.42
rpsA 1833949 c.408T>C synonymous_variant 0.42
rpsA 1833961 c.420C>G synonymous_variant 0.39
rpsA 1833970 c.429G>C synonymous_variant 0.37
rpsA 1833976 c.435C>T synonymous_variant 0.36
rpsA 1833979 c.438T>C synonymous_variant 0.36
rpsA 1833985 c.444G>C synonymous_variant 0.38
rpsA 1833988 c.447C>G synonymous_variant 0.37
rpsA 1833991 c.450C>G synonymous_variant 0.38
rpsA 1834009 c.468C>T synonymous_variant 0.35
rpsA 1834012 c.471G>C synonymous_variant 0.34
rpsA 1834021 c.480C>T synonymous_variant 0.32
rpsA 1834030 c.489C>G synonymous_variant 0.31
rpsA 1834066 c.525G>A synonymous_variant 0.19
rpsA 1834069 c.528G>C synonymous_variant 0.18
rpsA 1834096 c.555G>C synonymous_variant 0.16
rpsA 1834099 c.558C>G synonymous_variant 0.15
rpsA 1834102 c.561T>C synonymous_variant 0.16
rpsA 1834108 c.567C>G synonymous_variant 0.18
rpsA 1834151 p.Asn204His missense_variant 0.14
rpsA 1834154 p.Asn205Gln missense_variant 0.14
rpsA 1834157 c.616_618delTTGinsCTC synonymous_variant 0.14
rpsA 1834162 c.621A>G synonymous_variant 0.15
rpsA 1834165 c.624A>G synonymous_variant 0.15
rpsA 1834167 c.628_629delAC frameshift_variant 0.16
rpsA 1834172 c.631_632insGG frameshift_variant 0.16
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834183 c.642T>C synonymous_variant 0.21
rpsA 1834213 c.672G>C synonymous_variant 0.28
rpsA 1834231 c.690T>C synonymous_variant 0.26
rpsA 1834234 c.693G>C synonymous_variant 0.26
rpsA 1834240 c.699T>C synonymous_variant 0.25
rpsA 1834249 c.708T>C synonymous_variant 0.23
rpsA 1834252 c.711C>T synonymous_variant 0.23
rpsA 1834261 c.720A>G synonymous_variant 0.24
rpsA 1834264 c.723G>C synonymous_variant 0.23
rpsA 1834279 c.738C>T synonymous_variant 0.27
rpsA 1834282 c.741C>T synonymous_variant 0.27
rpsA 1834294 c.753G>C synonymous_variant 0.28
rpsA 1834298 p.Gln253Ala missense_variant 0.27
rpsA 1834303 c.762T>G synonymous_variant 0.27
rpsA 1834306 c.765T>C synonymous_variant 0.27
rpsA 1834327 c.786G>T synonymous_variant 0.25
rpsA 1834339 c.798C>T synonymous_variant 0.18
rpsA 1834340 p.Met267Leu missense_variant 0.17
rpsA 1834345 c.804C>T synonymous_variant 0.18
rpsA 1834348 c.807T>C synonymous_variant 0.18
rpsA 1834361 c.820T>C synonymous_variant 0.2
rpsA 1834366 c.825A>G synonymous_variant 0.19
rpsA 1834372 c.831G>A synonymous_variant 0.18
rpsA 1834375 c.834G>A synonymous_variant 0.18
rpsA 1834378 c.837T>C synonymous_variant 0.19
rpsA 1834387 c.846C>T synonymous_variant 0.19
rpsA 1834396 c.855G>T synonymous_variant 0.2
rpsA 1834399 p.His286Gln missense_variant 0.2
rpsA 1834408 c.867C>T synonymous_variant 0.21
rpsA 1834411 c.870T>C synonymous_variant 0.19
rpsA 1834423 c.882G>C synonymous_variant 0.18
rpsA 1834451 c.910T>C synonymous_variant 0.22
rpsA 1834456 c.915T>G synonymous_variant 0.25
rpsA 1834468 c.927A>G synonymous_variant 0.26
rpsA 1834483 p.Glu314Asp missense_variant 0.27
rpsA 1834489 c.948T>C synonymous_variant 0.28
rpsA 1834504 c.963G>T synonymous_variant 0.24
rpsA 1834528 c.987T>C synonymous_variant 0.25
rpsA 1834543 c.1002C>G synonymous_variant 0.27
rpsA 1834552 c.1011G>T synonymous_variant 0.25
rpsA 1834555 c.1014T>C synonymous_variant 0.25
rpsA 1834570 c.1029C>T synonymous_variant 0.27
rpsA 1834600 c.1059G>C synonymous_variant 0.26
rpsA 1834606 c.1065C>T synonymous_variant 0.23
rpsA 1834612 c.1071G>A synonymous_variant 0.23
rpsA 1834619 c.1078T>C synonymous_variant 0.22
rpsA 1834622 c.1081_1083delTCGinsAGC synonymous_variant 0.22
rpsA 1834633 c.1092A>G synonymous_variant 0.24
rpsA 1834639 c.1098T>C synonymous_variant 0.24
rpsA 1834667 p.Ala376Ser missense_variant 0.3
rpsA 1834690 c.1149T>C synonymous_variant 0.25
rpsA 1834732 c.1191T>C synonymous_variant 0.25
rpsA 1834738 p.Glu399Asp missense_variant 0.25
rpsA 1834747 c.1206A>G synonymous_variant 0.24
rpsA 1834753 c.1212T>C synonymous_variant 0.24
rpsA 1834756 c.1215G>A synonymous_variant 0.24
rpsA 1834759 c.1218A>C synonymous_variant 0.23
rpsA 1834765 c.1224A>G synonymous_variant 0.23
rpsA 1834774 c.1233C>T synonymous_variant 0.22
rpsA 1834776 p.Ala412Glu missense_variant 0.22
rpsA 1834779 p.Glu413Ala missense_variant 0.21
rpsA 1834786 c.1245A>G synonymous_variant 0.21
rpsA 1834789 c.1248T>C synonymous_variant 0.22
rpsA 1834810 c.1269C>T synonymous_variant 0.17
rpsA 1834813 c.1272G>C synonymous_variant 0.14
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 0.99
PPE35 2170065 p.Ala183Gly missense_variant 0.15
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
ahpC 2726593 p.Val134Ala missense_variant 0.14
ahpC 2726600 c.408T>C synonymous_variant 0.16
ahpC 2726638 p.Ala149Val missense_variant 0.16
ahpC 2726648 c.456T>A synonymous_variant 0.16
ahpC 2726654 c.462G>C synonymous_variant 0.16
ahpC 2726657 c.465A>C synonymous_variant 0.17
ahpC 2726669 c.477T>C synonymous_variant 0.16
ahpC 2726675 c.483A>C synonymous_variant 0.16
ahpC 2726681 c.489A>C synonymous_variant 0.16
ahpC 2726684 c.492G>C synonymous_variant 0.15
ahpC 2726696 c.504C>G synonymous_variant 0.16
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fbiD 3339734 p.Ala206Gly missense_variant 0.41
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
rpoA 3877656 c.852T>C synonymous_variant 0.13
rpoA 3877662 c.846C>T synonymous_variant 0.13
rpoA 3877665 c.843C>G synonymous_variant 0.14
rpoA 3877668 c.840A>G synonymous_variant 0.14
rpoA 3877674 c.834C>G synonymous_variant 0.15
rpoA 3877677 c.831G>C synonymous_variant 0.16
rpoA 3877680 c.828G>T synonymous_variant 0.19
rpoA 3877686 c.822A>G synonymous_variant 0.22
rpoA 3877692 c.816G>C synonymous_variant 0.25
rpoA 3877704 c.804G>T synonymous_variant 0.25
rpoA 3877734 c.774G>C synonymous_variant 0.25
rpoA 3877737 c.771G>C synonymous_variant 0.25
rpoA 3877743 p.Asp255Glu missense_variant 0.25
rpoA 3877746 c.762G>C synonymous_variant 0.24
rpoA 3877749 c.759C>T synonymous_variant 0.24
rpoA 3877752 p.Asp252Glu missense_variant 0.24
rpoA 3877765 p.Ala248Ser missense_variant 0.27
rpoA 3877770 c.738A>G synonymous_variant 0.28
rpoA 3877776 c.732T>C synonymous_variant 0.29
rpoA 3877782 c.726T>C synonymous_variant 0.29
rpoA 3877803 c.705G>T synonymous_variant 0.24
rpoA 3877818 c.690A>G synonymous_variant 0.22
rpoA 3877827 c.681C>G synonymous_variant 0.21
rpoA 3877836 c.672A>G synonymous_variant 0.14
rpoA 3877842 c.666A>C synonymous_variant 0.11
rpoA 3877890 c.618C>T synonymous_variant 0.12
rpoA 3877898 p.Pro204Ala missense_variant 0.12
rpoA 3877959 c.549C>G synonymous_variant 0.15
rpoA 3877962 c.546G>T synonymous_variant 0.16
rpoA 3877971 p.Asp179Glu missense_variant 0.2
rpoA 3877974 c.534G>C synonymous_variant 0.21
rpoA 3877989 c.519A>G synonymous_variant 0.24
rpoA 3878001 c.507A>G synonymous_variant 0.22
rpoA 3878010 c.498C>G synonymous_variant 0.23
rpoA 3878013 c.495T>C synonymous_variant 0.22
rpoA 3878019 c.489A>G synonymous_variant 0.23
rpoA 3878025 c.483C>G synonymous_variant 0.24
rpoA 3878028 c.480G>C synonymous_variant 0.24
rpoA 3878031 c.477T>C synonymous_variant 0.24
rpoA 3878034 c.474A>G synonymous_variant 0.24
rpoA 3878046 c.462T>G synonymous_variant 0.27
rpoA 3878050 p.Arg153Lys missense_variant 0.27
rpoA 3878055 c.453A>G synonymous_variant 0.27
rpoA 3878061 c.447G>C synonymous_variant 0.28
rpoA 3878070 c.438T>C synonymous_variant 0.27
rpoA 3878082 c.426T>G synonymous_variant 0.26
rpoA 3878102 p.Val136Ile missense_variant 0.25
rpoA 3878103 c.405A>G synonymous_variant 0.24
rpoA 3878106 c.402G>C synonymous_variant 0.24
rpoA 3878118 c.390T>C synonymous_variant 0.22
rpoA 3878127 c.381G>C synonymous_variant 0.2
rpoA 3878141 p.Met123Leu missense_variant 0.16
rpoA 3878142 p.Gly122Asp missense_variant 0.15
rpoA 3878185 p.Gly108Ala missense_variant 0.21
rpoA 3878188 p.Ala107Gly missense_variant 0.2
rpoA 3878193 c.315T>C synonymous_variant 0.19
rpoA 3878196 p.Glu104Thr missense_variant 0.18
rpoA 3878199 c.309T>C synonymous_variant 0.19
rpoA 3878214 c.294C>T synonymous_variant 0.24
rpoA 3878217 p.Leu97Val missense_variant 0.24
rpoA 3878244 c.264G>A synonymous_variant 0.21
rpoA 3878247 c.261G>C synonymous_variant 0.19
rpoA 3878251 c.256_257delTCinsAG synonymous_variant 0.19
rpoA 3878259 c.249G>C synonymous_variant 0.18
rpoA 3878264 p.Ser82Gly missense_variant 0.19
rpoA 3878271 c.237T>C synonymous_variant 0.18
rpoA 3878276 c.232C>T synonymous_variant 0.18
rpoA 3878283 p.Glu75Asp missense_variant 0.18
rpoA 3878295 c.213A>G synonymous_variant 0.15
rpoA 3878298 c.210A>G synonymous_variant 0.16
clpC1 4038671 c.2034T>G synonymous_variant 0.12
clpC1 4038713 c.1992T>C synonymous_variant 0.14
clpC1 4038740 c.1965G>C synonymous_variant 0.17
clpC1 4038749 c.1956C>A synonymous_variant 0.18
clpC1 4038755 c.1950G>T synonymous_variant 0.19
clpC1 4038770 c.1935C>T synonymous_variant 0.2
clpC1 4038773 c.1932T>C synonymous_variant 0.2
clpC1 4038776 c.1929G>A synonymous_variant 0.21
clpC1 4038782 c.1923G>C synonymous_variant 0.21
clpC1 4038790 c.1915C>T synonymous_variant 0.23
clpC1 4038795 p.Ser637Thr missense_variant 0.23
clpC1 4038810 p.Gln632Ser missense_variant 0.18
clpC1 4038812 c.1893T>C synonymous_variant 0.19
clpC1 4038857 c.1848C>T synonymous_variant 0.26
clpC1 4038875 c.1830C>G synonymous_variant 0.28
clpC1 4038878 c.1827A>G synonymous_variant 0.28
clpC1 4038884 c.1821C>T synonymous_variant 0.3
clpC1 4038890 c.1815G>A synonymous_variant 0.3
clpC1 4038905 c.1800A>T synonymous_variant 0.3
clpC1 4038911 c.1794G>T synonymous_variant 0.28
clpC1 4038914 c.1791G>C synonymous_variant 0.28
clpC1 4038917 c.1788C>T synonymous_variant 0.28
clpC1 4038923 c.1782A>G synonymous_variant 0.29
clpC1 4038926 c.1779G>T synonymous_variant 0.29
clpC1 4038953 c.1752A>G synonymous_variant 0.31
clpC1 4038956 c.1749T>C synonymous_variant 0.32
clpC1 4038965 c.1740T>C synonymous_variant 0.32
clpC1 4038971 c.1734T>C synonymous_variant 0.31
clpC1 4038974 c.1731T>C synonymous_variant 0.3
clpC1 4038977 c.1728G>A synonymous_variant 0.31
clpC1 4038986 p.Asp573Glu missense_variant 0.28
clpC1 4038989 c.1716T>C synonymous_variant 0.28
clpC1 4038997 c.1708T>C synonymous_variant 0.25
clpC1 4039004 c.1701C>G synonymous_variant 0.26
clpC1 4039019 c.1686G>C synonymous_variant 0.28
clpC1 4039022 c.1683A>G synonymous_variant 0.26
clpC1 4039031 c.1674T>A synonymous_variant 0.27
clpC1 4039037 c.1668T>C synonymous_variant 0.25
clpC1 4039073 c.1632C>T synonymous_variant 0.21
clpC1 4039085 c.1620A>G synonymous_variant 0.17
clpC1 4039088 c.1617G>C synonymous_variant 0.17
clpC1 4039091 c.1614G>A synonymous_variant 0.16
clpC1 4039097 c.1608G>C synonymous_variant 0.19
clpC1 4039106 c.1599G>C synonymous_variant 0.2
clpC1 4039112 c.1593C>G synonymous_variant 0.2
clpC1 4039121 c.1584T>C synonymous_variant 0.21
clpC1 4039133 c.1572C>G synonymous_variant 0.21
clpC1 4039136 c.1569C>T synonymous_variant 0.21
clpC1 4039142 c.1563A>G synonymous_variant 0.2
clpC1 4039145 c.1560G>C synonymous_variant 0.21
clpC1 4039169 p.Glu512Asp missense_variant 0.19
clpC1 4039172 c.1533A>G synonymous_variant 0.19
clpC1 4039178 c.1527G>C synonymous_variant 0.21
clpC1 4039181 c.1522_1524delTTGinsCTC synonymous_variant 0.18
clpC1 4039184 c.1521G>A synonymous_variant 0.18
clpC1 4039187 c.1518G>T synonymous_variant 0.2
clpC1 4039199 p.Ala502Glu missense_variant 0.2
clpC1 4039226 c.1479T>C synonymous_variant 0.17
clpC1 4039241 c.1464G>C synonymous_variant 0.19
clpC1 4039244 c.1461G>C synonymous_variant 0.16
clpC1 4039499 c.1206G>C synonymous_variant 0.14
clpC1 4039517 c.1188C>G synonymous_variant 0.18
clpC1 4039553 c.1152C>G synonymous_variant 0.23
clpC1 4039559 c.1146C>G synonymous_variant 0.22
clpC1 4039570 p.Met379Leu missense_variant 0.2
clpC1 4039571 c.1134G>C synonymous_variant 0.2
clpC1 4039574 p.Ala377Gly missense_variant 0.2
clpC1 4039577 c.1128T>C synonymous_variant 0.2
clpC1 4039583 c.1122C>T synonymous_variant 0.21
clpC1 4039586 c.1119G>C synonymous_variant 0.21
clpC1 4039601 p.Ala368Ser missense_variant 0.25
clpC1 4039610 c.1095G>C synonymous_variant 0.27
clpC1 4039616 c.1089G>C synonymous_variant 0.28
clpC1 4039622 c.1083C>G synonymous_variant 0.31
clpC1 4039654 p.Thr351Ser missense_variant 0.33
clpC1 4039661 c.1044T>C synonymous_variant 0.33
clpC1 4039664 c.1041G>C synonymous_variant 0.33
clpC1 4039682 c.1023C>G synonymous_variant 0.31
clpC1 4039691 c.1014G>C synonymous_variant 0.29
clpC1 4039694 c.1011G>T synonymous_variant 0.26
clpC1 4039724 c.981A>G synonymous_variant 0.38
clpC1 4039742 c.963C>T synonymous_variant 0.37
clpC1 4039748 c.957G>C synonymous_variant 0.36
clpC1 4039751 c.954A>G synonymous_variant 0.36
clpC1 4039757 c.948A>G synonymous_variant 0.37
clpC1 4039769 c.936C>G synonymous_variant 0.37
clpC1 4039778 c.927A>G synonymous_variant 0.32
clpC1 4039781 c.924G>C synonymous_variant 0.32
clpC1 4039787 c.918G>C synonymous_variant 0.31
clpC1 4039790 c.915C>G synonymous_variant 0.32
clpC1 4039793 c.912C>G synonymous_variant 0.32
clpC1 4039817 c.888A>T synonymous_variant 0.3
clpC1 4039820 c.885T>G synonymous_variant 0.31
clpC1 4039823 c.882T>C synonymous_variant 0.31
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.3
clpC1 4039832 c.873C>G synonymous_variant 0.3
clpC1 4039850 c.855T>C synonymous_variant 0.29
clpC1 4039865 c.840T>C synonymous_variant 0.28
clpC1 4039898 c.807C>G synonymous_variant 0.29
clpC1 4039904 c.801A>G synonymous_variant 0.29
clpC1 4039931 c.774T>C synonymous_variant 0.34
clpC1 4039946 c.759A>G synonymous_variant 0.32
clpC1 4039949 c.756G>C synonymous_variant 0.3
clpC1 4039952 c.753T>C synonymous_variant 0.29
clpC1 4039955 c.750G>C synonymous_variant 0.29
clpC1 4039958 c.747G>C synonymous_variant 0.29
clpC1 4039996 p.Glu237Gln missense_variant 0.34
clpC1 4040002 p.His235Asn missense_variant 0.32
clpC1 4040003 c.702G>C synonymous_variant 0.33
clpC1 4040018 c.687G>C synonymous_variant 0.32
clpC1 4040021 c.684A>T synonymous_variant 0.31
clpC1 4040024 c.681A>G synonymous_variant 0.32
clpC1 4040033 c.672G>C synonymous_variant 0.31
clpC1 4040087 c.618G>C synonymous_variant 0.19
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.18
clpC1 4040093 c.612C>G synonymous_variant 0.19
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243460 c.228C>T synonymous_variant 1.0
embB 4246584 p.Arg24Pro missense_variant 0.25
aftB 4267647 p.Asp397Gly missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407620 p.Tyr195His missense_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0
whiB6 4336779 c.80_*1391del frameshift_variant&stop_lost&splice_region_variant 1.0