Rv3596c - c.1569C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
48 Sensitive
5 RR-TB
23 HR-TB
12 MDR-TB
2 Pre-XDR-TB
3 XDR-TB
45 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1.1 | 5 |
| lineage2.2.1 | 14 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.9 | 64 |
| La1.7;lineage4.9 | 5 |
| M.canetti;lineage2.2 | 2 |
| lineage4.7 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage3 | 2 |
| lineage4 | 4 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.8 | 4 |
| La1.8.1 | 2 |
| M.canetti;lineage1 | 1 |
| lineage4.3.4.2 | 1 |
| M.canetti;lineage4.9 | 3 |
| lineage4.1.2 | 2 |
| lineage2.2 | 1 |
| lineage4.1.2.1 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage3.1;lineage9 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.1.1.3 | 1 |
| 2 | |
| lineage2.2.1.2 | 1 |
| lineage1.1.1 | 1 |
| lineage4.3.3 | 2 |
| lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La1;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 138 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR3797081 | Sensitive | lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR28351347 | Other | lineage3 | None | SRR3675265 | Other | lineage4 | None | SRR6046210 | Other | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR349265 | Other | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR3797019 | Other | La1.8.1 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR349299 | Other | lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR3675441 | Other | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR5917714 | Sensitive | lineage4.8 | by | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR6045191 | Sensitive | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR26399491 | Sensitive | lineage1.1.1.1 | None | SRR14782054 | Other | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR2513259 | Other | lineage3 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | SRR7496471 | Sensitive | lineage4 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR3273109 | HR-TB | lineage4 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR12006550 | Sensitive | None | ERR349298 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR363502 | Other | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR363447 | Other | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR4818536 | Other | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR4796577 | HR-TB | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1791747 | Other | La1.8.1 | None | ERR6358979 | Other | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR16156775 | Other | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR29097066 | Sensitive | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None |
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