TB-Profiler result

Run: SRR14066533
Summary

Run ID: SRR14066533

Sample name:

Date: 03-04-2023 09:46:19

Number of reads: 7371796

Percentage reads mapped: 77.84

Strain: lineage1.1.1

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage1 Indo-Oceanic EAI RD239 0.93
lineage1.1 Indo-Oceanic EAI3;EAI4;EAI5;EAI6 RD239 0.98
lineage1.1.1 Indo-Oceanic EAI4;EAI5 RD239 0.97
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6112 p.Met291Ile missense_variant 0.93
gyrB 6160 c.921C>G synonymous_variant 0.17
gyrB 6169 c.930C>G synonymous_variant 0.18
gyrB 6181 c.942C>A synonymous_variant 0.2
gyrB 6184 c.945C>A synonymous_variant 0.2
gyrB 6208 c.969G>C synonymous_variant 0.23
gyrB 6214 c.975G>C synonymous_variant 0.23
gyrB 6223 c.984G>C synonymous_variant 0.25
gyrB 6238 c.999G>A synonymous_variant 0.23
gyrB 6242 p.Arg335Lys missense_variant 0.21
gyrB 6250 c.1011A>G synonymous_variant 0.23
gyrB 6280 c.1041T>C synonymous_variant 0.22
gyrB 6286 c.1047T>C synonymous_variant 0.21
gyrB 6295 c.1056A>G synonymous_variant 0.19
gyrB 6298 c.1059C>G synonymous_variant 0.18
gyrA 6307 c.-995T>G upstream_gene_variant 0.18
gyrA 6310 c.-992G>C upstream_gene_variant 0.17
gyrA 6586 c.-716T>C upstream_gene_variant 0.16
gyrA 6610 c.-692C>G upstream_gene_variant 0.22
gyrA 6613 c.-689A>C upstream_gene_variant 0.22
gyrA 6616 c.-686A>G upstream_gene_variant 0.22
gyrA 6622 c.-680C>T upstream_gene_variant 0.22
gyrA 6634 c.-668T>C upstream_gene_variant 0.21
gyrA 6637 c.-665T>G upstream_gene_variant 0.22
gyrA 6640 c.-662A>C upstream_gene_variant 0.21
gyrA 6643 c.-659A>G upstream_gene_variant 0.21
gyrA 6649 c.-653T>C upstream_gene_variant 0.23
gyrA 6652 c.-650C>G upstream_gene_variant 0.23
gyrA 6670 c.-632G>C upstream_gene_variant 0.24
gyrA 6673 c.-629A>C upstream_gene_variant 0.24
gyrA 6700 c.-602T>C upstream_gene_variant 0.25
gyrA 6703 c.-599G>C upstream_gene_variant 0.25
gyrA 6709 c.-593A>G upstream_gene_variant 0.26
gyrA 6730 c.-572A>G upstream_gene_variant 0.27
gyrA 6742 c.-560A>G upstream_gene_variant 0.27
gyrA 6745 c.-557T>C upstream_gene_variant 0.26
gyrA 6760 c.-542G>C upstream_gene_variant 0.26
gyrA 6766 c.-536G>C upstream_gene_variant 0.25
gyrA 6769 c.-533C>T upstream_gene_variant 0.24
gyrA 6772 c.-530C>G upstream_gene_variant 0.25
gyrA 6775 c.-527G>C upstream_gene_variant 0.26
gyrA 6793 c.-509T>C upstream_gene_variant 0.27
gyrB 6794 p.Ile519Leu missense_variant 0.27
gyrB 6797 p.Gly520Ser missense_variant 0.27
gyrA 6841 c.-461T>C upstream_gene_variant 0.24
gyrA 6847 c.-455C>T upstream_gene_variant 0.24
gyrA 6856 c.-446T>C upstream_gene_variant 0.23
gyrA 6862 c.-440C>G upstream_gene_variant 0.24
gyrA 6869 c.-433T>C upstream_gene_variant 0.24
gyrA 6898 c.-404G>C upstream_gene_variant 0.24
gyrA 6904 c.-398C>G upstream_gene_variant 0.24
gyrA 6910 c.-392G>A upstream_gene_variant 0.24
gyrA 6919 c.-383T>C upstream_gene_variant 0.24
gyrA 6925 c.-377T>C upstream_gene_variant 0.22
gyrA 6926 c.-376T>C upstream_gene_variant 0.22
gyrA 6931 c.-371A>G upstream_gene_variant 0.22
gyrA 6934 c.-368A>G upstream_gene_variant 0.22
gyrA 6949 c.-353A>G upstream_gene_variant 0.21
gyrA 6950 c.-352_-350delCTCinsTTG upstream_gene_variant 0.21
gyrA 6967 c.-335T>C upstream_gene_variant 0.22
gyrB 6970 p.Asp577Glu missense_variant 0.21
gyrA 6973 c.-329G>C upstream_gene_variant 0.21
gyrA 6976 c.-326A>G upstream_gene_variant 0.21
gyrA 6982 c.-320A>C upstream_gene_variant 0.21
gyrA 7006 c.-296T>C upstream_gene_variant 0.19
gyrA 7012 c.-290G>C upstream_gene_variant 0.18
gyrA 7018 c.-284G>C upstream_gene_variant 0.17
gyrA 7024 c.-278G>C upstream_gene_variant 0.18
gyrA 7033 c.-269G>C upstream_gene_variant 0.17
gyrA 7069 c.-233C>T upstream_gene_variant 0.17
gyrA 7078 c.-224A>G upstream_gene_variant 0.17
gyrA 7081 c.-221T>C upstream_gene_variant 0.18
gyrA 7084 c.-218A>G upstream_gene_variant 0.18
gyrA 7093 c.-209T>C upstream_gene_variant 0.19
gyrA 7114 c.-188C>G upstream_gene_variant 0.2
gyrA 7120 c.-182T>C upstream_gene_variant 0.19
gyrA 7123 c.-179C>G upstream_gene_variant 0.2
gyrA 7126 c.-176G>C upstream_gene_variant 0.2
gyrA 7129 c.-173T>G upstream_gene_variant 0.19
gyrA 7132 c.-170T>G upstream_gene_variant 0.2
gyrA 7141 c.-161T>C upstream_gene_variant 0.2
gyrA 7147 c.-155G>C upstream_gene_variant 0.21
gyrA 7150 c.-152G>C upstream_gene_variant 0.2
gyrA 7162 c.-140C>G upstream_gene_variant 0.19
gyrA 7165 c.-137C>G upstream_gene_variant 0.19
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7457 c.156T>C synonymous_variant 0.17
gyrA 7463 c.162G>C synonymous_variant 0.17
gyrA 7469 c.168C>G synonymous_variant 0.17
gyrA 7472 c.171T>C synonymous_variant 0.17
gyrA 7475 c.174A>G synonymous_variant 0.18
gyrA 7480 p.Phe60Tyr missense_variant 0.18
gyrA 7484 c.183T>C synonymous_variant 0.18
gyrA 7490 c.189C>G synonymous_variant 0.18
gyrA 7496 c.195C>T synonymous_variant 0.18
gyrA 7499 c.198G>C synonymous_variant 0.19
gyrA 7532 c.231T>G synonymous_variant 0.19
gyrA 7541 c.240C>G synonymous_variant 0.2
gyrA 7547 c.246C>T synonymous_variant 0.2
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7787 c.486G>A synonymous_variant 0.16
gyrA 7796 c.495G>A synonymous_variant 0.16
gyrA 7799 c.498A>G synonymous_variant 0.17
gyrA 7832 c.531G>T synonymous_variant 0.16
gyrA 7835 c.534A>G synonymous_variant 0.17
gyrA 7859 c.558A>G synonymous_variant 0.16
gyrA 7865 c.564T>C synonymous_variant 0.16
gyrA 8324 c.1023T>C synonymous_variant 0.16
gyrA 8339 c.1038A>G synonymous_variant 0.18
gyrA 8342 c.1041G>C synonymous_variant 0.18
gyrA 8366 c.1065G>C synonymous_variant 0.19
gyrA 8372 c.1071G>A synonymous_variant 0.18
gyrA 8375 c.1074G>C synonymous_variant 0.18
gyrA 8382 p.Leu361Met missense_variant 0.18
gyrA 8391 p.Tyr364His missense_variant 0.18
gyrA 8399 c.1098T>C synonymous_variant 0.18
gyrA 8401 p.Asp367Ala missense_variant 0.18
gyrA 8420 c.1119T>C synonymous_variant 0.22
gyrA 8423 c.1122G>C synonymous_variant 0.21
gyrA 8426 c.1125G>C synonymous_variant 0.22
gyrA 8438 c.1137C>T synonymous_variant 0.22
gyrA 8452 p.Ala384Val missense_variant 0.8
gyrA 8459 c.1158G>A synonymous_variant 0.18
gyrA 8462 c.1161A>G synonymous_variant 0.17
gyrA 8471 c.1170T>C synonymous_variant 0.19
gyrA 8480 c.1179C>T synonymous_variant 0.18
gyrA 8486 c.1185T>C synonymous_variant 0.17
gyrA 8537 c.1236G>A synonymous_variant 0.17
gyrA 8546 c.1245T>C synonymous_variant 0.18
gyrA 8555 c.1254G>C synonymous_variant 0.19
gyrA 8561 c.1260A>C synonymous_variant 0.18
gyrA 8573 c.1272G>C synonymous_variant 0.17
gyrA 8603 c.1302A>G synonymous_variant 0.17
gyrA 8619 c.1318T>C synonymous_variant 0.17
gyrA 8624 c.1323G>C synonymous_variant 0.17
gyrA 8628 c.1327C>T synonymous_variant 0.16
gyrA 8636 c.1335A>G synonymous_variant 0.18
gyrA 8642 c.1341A>G synonymous_variant 0.19
gyrA 8672 c.1371A>G synonymous_variant 0.21
gyrA 8693 c.1392T>C synonymous_variant 0.17
gyrA 8717 c.1416C>T synonymous_variant 0.16
gyrA 8731 p.Gly477Ala missense_variant 0.17
gyrA 8767 p.Arg489Lys missense_variant 0.16
gyrA 8786 c.1485T>C synonymous_variant 0.18
gyrA 8837 c.1536C>T synonymous_variant 0.16
gyrA 8858 c.1557T>C synonymous_variant 0.17
gyrA 8867 c.1566A>G synonymous_variant 0.17
gyrA 8897 c.1596T>C synonymous_variant 0.17
gyrA 8903 c.1602T>C synonymous_variant 0.18
gyrA 8983 p.Cys561Ser missense_variant 0.18
gyrA 8990 c.1689C>G synonymous_variant 0.19
gyrA 8998 p.Leu566Trp missense_variant 0.18
gyrA 9023 c.1722A>C synonymous_variant 0.16
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9252 p.Val651Ile missense_variant 0.15
gyrA 9263 c.1962C>G synonymous_variant 0.16
gyrA 9268 p.Asn656Thr missense_variant 0.16
gyrA 9300 p.Ala667Ser missense_variant 0.15
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9326 c.2025G>T synonymous_variant 0.16
fgd1 490854 c.72C>T synonymous_variant 0.16
fgd1 491229 c.447C>T synonymous_variant 0.15
fgd1 491265 c.483G>C synonymous_variant 0.16
fgd1 491286 c.504G>A synonymous_variant 0.15
fgd1 491296 p.Val172Ile missense_variant 0.16
fgd1 491328 c.546C>A synonymous_variant 0.16
fgd1 491340 c.558C>T synonymous_variant 0.21
fgd1 491343 c.561C>G synonymous_variant 0.22
fgd1 491355 c.573C>G synonymous_variant 0.22
fgd1 491364 c.582T>C synonymous_variant 0.21
fgd1 491367 c.585G>C synonymous_variant 0.21
fgd1 491388 c.606C>G synonymous_variant 0.16
fgd1 491393 p.Thr204Asn missense_variant 0.16
fgd1 491472 c.690A>G synonymous_variant 0.17
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575713 c.366G>A synonymous_variant 0.17
mshA 575725 c.378C>G synonymous_variant 0.16
mshA 575737 c.390T>C synonymous_variant 0.17
mshA 575743 c.396C>T synonymous_variant 0.17
mshA 575773 c.426C>A synonymous_variant 0.15
mshA 575785 c.438T>C synonymous_variant 0.16
mshA 575806 c.459G>C synonymous_variant 0.16
rpoB 760124 c.318C>T synonymous_variant 0.16
rpoB 760139 c.333A>G synonymous_variant 0.18
rpoB 760142 c.336C>G synonymous_variant 0.18
rpoB 760172 c.366G>C synonymous_variant 0.22
rpoB 760181 c.375T>C synonymous_variant 0.2
rpoB 760184 c.378A>G synonymous_variant 0.22
rpoB 760196 c.390C>G synonymous_variant 0.23
rpoB 760223 c.417T>C synonymous_variant 0.24
rpoB 760235 c.429T>C synonymous_variant 0.23
rpoB 760253 c.447T>C synonymous_variant 0.22
rpoB 760283 c.477G>C synonymous_variant 0.24
rpoB 760307 c.501T>C synonymous_variant 0.22
rpoB 760310 c.504G>C synonymous_variant 0.22
rpoB 760313 c.507G>C synonymous_variant 0.22
rpoB 760331 c.525G>T synonymous_variant 0.21
rpoB 760337 c.531C>T synonymous_variant 0.18
rpoB 760340 c.534G>C synonymous_variant 0.18
rpoB 760376 p.Asp190Glu missense_variant 0.17
rpoB 760564 p.Arg253Leu missense_variant 0.15
rpoB 760591 p.Val262Ala missense_variant 0.17
rpoB 760611 c.805T>C synonymous_variant 0.18
rpoB 760637 c.831G>A synonymous_variant 0.15
rpoB 760934 c.1128C>T synonymous_variant 0.17
rpoB 760946 c.1140A>G synonymous_variant 0.19
rpoB 760970 c.1164G>C synonymous_variant 0.22
rpoB 760971 c.1165C>A synonymous_variant 0.22
rpoB 760982 c.1176G>C synonymous_variant 0.23
rpoB 760985 c.1179G>C synonymous_variant 0.24
rpoB 760991 c.1185G>C synonymous_variant 0.26
rpoB 761006 c.1200C>T synonymous_variant 0.27
rpoB 761015 c.1209G>C synonymous_variant 0.28
rpoB 761027 c.1221A>G synonymous_variant 0.27
rpoB 761037 c.1231T>C synonymous_variant 0.29
rpoB 761057 c.1251G>C synonymous_variant 0.28
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.25
rpoB 761102 c.1296A>G synonymous_variant 0.24
rpoB 761126 c.1320G>C synonymous_variant 0.23
rpoB 761132 c.1326G>C synonymous_variant 0.21
rpoB 761133 c.1327_1329delTTGinsCTC synonymous_variant 0.2
rpoB 761150 c.1344A>C synonymous_variant 0.2
rpoB 761165 c.1359G>C synonymous_variant 0.21
rpoB 761180 c.1374A>C synonymous_variant 0.2
rpoB 761189 c.1383T>C synonymous_variant 0.19
rpoB 761195 c.1389G>C synonymous_variant 0.17
rpoB 761198 c.1392G>C synonymous_variant 0.16
rpoB 761375 c.1569G>C synonymous_variant 0.17
rpoB 761414 c.1608A>G synonymous_variant 0.19
rpoB 761423 c.1617T>C synonymous_variant 0.2
rpoB 761435 c.1629T>C synonymous_variant 0.18
rpoB 761438 c.1632G>C synonymous_variant 0.17
rpoB 761444 c.1638T>C synonymous_variant 0.17
rpoB 761447 c.1641C>G synonymous_variant 0.17
rpoB 761453 c.1647C>G synonymous_variant 0.17
rpoB 761457 p.Pro551Gly missense_variant 0.17
rpoB 761465 c.1659G>C synonymous_variant 0.2
rpoB 761492 c.1686G>C synonymous_variant 0.2
rpoB 761507 c.1701G>T synonymous_variant 0.21
rpoB 761510 c.1704T>C synonymous_variant 0.2
rpoB 761537 c.1731C>G synonymous_variant 0.19
rpoB 761561 c.1755C>G synonymous_variant 0.23
rpoB 761564 c.1758G>C synonymous_variant 0.23
rpoB 761570 c.1764T>C synonymous_variant 0.23
rpoB 761579 c.1773G>C synonymous_variant 0.22
rpoB 761606 c.1800C>G synonymous_variant 0.21
rpoB 761612 c.1806G>C synonymous_variant 0.19
rpoB 761615 c.1809A>C synonymous_variant 0.19
rpoB 761636 c.1830G>T synonymous_variant 0.18
rpoB 761645 c.1839C>G synonymous_variant 0.16
rpoB 761648 c.1842T>C synonymous_variant 0.16
rpoB 761657 c.1851C>G synonymous_variant 0.17
rpoB 761675 c.1869G>C synonymous_variant 0.18
rpoB 761690 c.1884G>C synonymous_variant 0.19
rpoB 761772 p.His656Ala missense_variant 0.17
rpoB 761778 p.Asn658Asp missense_variant 0.18
rpoB 761791 p.Arg662His missense_variant 0.18
rpoB 761813 c.2007T>C synonymous_variant 0.19
rpoB 761819 c.2013G>C synonymous_variant 0.18
rpoB 761834 c.2028T>G synonymous_variant 0.2
rpoB 761848 p.Cys681Ser missense_variant 0.19
rpoB 761852 c.2046C>G synonymous_variant 0.19
rpoB 761867 c.2061C>T synonymous_variant 0.22
rpoB 761873 c.2067A>C synonymous_variant 0.21
rpoB 761885 c.2079T>C synonymous_variant 0.22
rpoB 761891 c.2085G>C synonymous_variant 0.22
rpoB 761909 c.2103T>C synonymous_variant 0.22
rpoB 761912 c.2106T>C synonymous_variant 0.21
rpoB 761915 p.Asp703Glu missense_variant 0.22
rpoB 761916 p.Asp704Asn missense_variant 0.22
rpoB 761948 c.2142G>C synonymous_variant 0.26
rpoB 761954 c.2148C>G synonymous_variant 0.27
rpoB 761999 c.2193G>C synonymous_variant 0.25
rpoB 762053 c.2247T>C synonymous_variant 0.26
rpoB 762065 c.2259T>C synonymous_variant 0.28
rpoB 762083 c.2277T>C synonymous_variant 0.25
rpoB 762086 c.2280G>C synonymous_variant 0.24
rpoB 762101 c.2295C>G synonymous_variant 0.23
rpoB 762114 p.Ile770Val missense_variant 0.22
rpoB 762131 c.2325C>G synonymous_variant 0.22
rpoB 762140 c.2334G>C synonymous_variant 0.22
rpoB 762143 c.2337T>C synonymous_variant 0.21
rpoB 762149 c.2343G>T synonymous_variant 0.22
rpoB 762158 c.2352G>C synonymous_variant 0.21
rpoB 762161 c.2355C>G synonymous_variant 0.2
rpoB 762176 c.2370T>C synonymous_variant 0.23
rpoB 762185 c.2379G>C synonymous_variant 0.24
rpoB 762233 c.2427G>C synonymous_variant 0.25
rpoB 762254 c.2448T>G synonymous_variant 0.27
rpoB 762257 c.2451C>G synonymous_variant 0.26
rpoB 762266 c.2460T>C synonymous_variant 0.26
rpoB 762284 c.2478G>C synonymous_variant 0.25
rpoB 762293 c.2487T>C synonymous_variant 0.26
rpoB 762317 c.2511A>G synonymous_variant 0.24
rpoB 762329 c.2523G>C synonymous_variant 0.22
rpoB 762338 c.2532T>C synonymous_variant 0.19
rpoB 762347 c.2541T>C synonymous_variant 0.2
rpoB 762362 p.Glu852Asp missense_variant 0.2
rpoB 762369 c.2563T>C synonymous_variant 0.2
rpoC 762389 c.-981G>A upstream_gene_variant 0.2
rpoC 762395 c.-975G>C upstream_gene_variant 0.18
rpoC 762398 c.-972T>C upstream_gene_variant 0.18
rpoC 762401 c.-969G>C upstream_gene_variant 0.18
rpoC 762404 c.-966T>C upstream_gene_variant 0.18
rpoC 762410 c.-960T>C upstream_gene_variant 0.19
rpoC 762416 c.-954A>G upstream_gene_variant 0.2
rpoC 762446 c.-924C>G upstream_gene_variant 0.19
rpoC 762470 c.-900G>C upstream_gene_variant 0.19
rpoB 762486 p.Pro894Ala missense_variant 0.16
rpoB 762490 p.Val895Asp missense_variant 0.16
rpoC 762518 c.-852C>T upstream_gene_variant 0.17
rpoC 762533 c.-837T>C upstream_gene_variant 0.18
rpoC 762536 c.-834T>C upstream_gene_variant 0.17
rpoC 762545 c.-825C>G upstream_gene_variant 0.18
rpoC 762551 c.-819C>T upstream_gene_variant 0.17
rpoC 762728 c.-642C>G upstream_gene_variant 0.16
rpoC 762749 c.-621C>G upstream_gene_variant 0.18
rpoC 762753 c.-617T>C upstream_gene_variant 0.18
rpoB 762759 p.Cys985Ala missense_variant 0.18
rpoC 762782 c.-588T>C upstream_gene_variant 0.18
rpoB 762785 p.Asp993Glu missense_variant 0.19
rpoB 762795 p.Asp997Asn missense_variant 0.19
rpoB 762799 p.Ala998Gly missense_variant 0.19
rpoC 762812 c.-558C>G upstream_gene_variant 0.21
rpoB 762813 p.Met1003Val missense_variant 0.21
rpoC 762827 c.-543G>C upstream_gene_variant 0.26
rpoC 762857 c.-513C>G upstream_gene_variant 0.26
rpoC 762860 c.-510G>C upstream_gene_variant 0.25
rpoC 762863 c.-507T>C upstream_gene_variant 0.25
rpoB 762868 p.Tyr1021Phe missense_variant 0.26
rpoC 762890 c.-480C>T upstream_gene_variant 0.27
rpoC 762929 c.-441G>C upstream_gene_variant 0.26
rpoC 762995 c.-375G>C upstream_gene_variant 0.26
rpoC 763028 c.-342T>C upstream_gene_variant 0.25
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.25
rpoC 763040 c.-330C>G upstream_gene_variant 0.27
rpoC 763070 c.-300T>C upstream_gene_variant 0.26
rpoC 763085 c.-285C>G upstream_gene_variant 0.27
rpoC 763115 c.-255T>C upstream_gene_variant 0.25
rpoC 763127 c.-243G>C upstream_gene_variant 0.24
rpoC 763133 c.-237G>C upstream_gene_variant 0.25
rpoC 763142 c.-228C>G upstream_gene_variant 0.25
rpoC 763166 c.-204A>G upstream_gene_variant 0.22
rpoC 763169 c.-201A>G upstream_gene_variant 0.21
rpoC 763441 c.72C>T synonymous_variant 0.17
rpoC 763444 c.75T>C synonymous_variant 0.18
rpoC 763456 c.87A>G synonymous_variant 0.19
rpoC 763468 c.99G>C synonymous_variant 0.2
rpoC 763486 c.117T>C synonymous_variant 0.24
rpoC 763528 c.159G>A synonymous_variant 0.25
rpoC 763546 c.177A>G synonymous_variant 0.24
rpoC 763570 c.201G>C synonymous_variant 0.23
rpoC 763573 c.204G>C synonymous_variant 0.23
rpoC 763594 c.225C>T synonymous_variant 0.23
rpoC 763633 c.264T>C synonymous_variant 0.23
rpoC 763636 c.267T>C synonymous_variant 0.23
rpoC 763660 c.291T>G synonymous_variant 0.22
rpoC 763666 c.297G>C synonymous_variant 0.24
rpoC 763669 c.300C>G synonymous_variant 0.24
rpoC 763675 c.306C>G synonymous_variant 0.24
rpoC 763702 c.333C>G synonymous_variant 0.26
rpoC 763717 c.348T>C synonymous_variant 0.25
rpoC 763723 c.354G>C synonymous_variant 0.25
rpoC 763729 c.360G>C synonymous_variant 0.27
rpoC 763744 c.375G>C synonymous_variant 0.26
rpoC 763765 c.396T>G synonymous_variant 0.25
rpoC 763768 c.399C>G synonymous_variant 0.25
rpoC 763780 c.411C>G synonymous_variant 0.25
rpoC 763792 p.Glu141Asp missense_variant 0.23
rpoC 763801 c.432C>G synonymous_variant 0.25
rpoC 763807 c.438T>C synonymous_variant 0.24
rpoC 763813 c.444C>G synonymous_variant 0.25
rpoC 763835 p.Ala156Met missense_variant 0.23
rpoC 763851 p.Ala161Gly missense_variant 0.23
rpoC 763855 c.486C>T synonymous_variant 0.24
rpoC 763858 c.489A>G synonymous_variant 0.24
rpoC 763872 p.Gly168Ala missense_variant 0.25
rpoC 763876 c.507A>G synonymous_variant 0.25
rpoC 763879 c.510A>G synonymous_variant 0.26
rpoC 763884 p.Ala172Val missense_variant 0.74
rpoC 763886 c.517C>A synonymous_variant 0.73
rpoC 763894 c.525A>G synonymous_variant 0.27
rpoC 763936 c.567C>G synonymous_variant 0.27
rpoC 763939 c.570G>A synonymous_variant 0.28
rpoC 763948 c.579G>C synonymous_variant 0.28
rpoC 763963 c.594C>G synonymous_variant 0.28
rpoC 763996 c.627T>C synonymous_variant 0.26
rpoC 764005 c.636G>C synonymous_variant 0.27
rpoC 764011 c.642T>C synonymous_variant 0.26
rpoC 764024 c.655T>C synonymous_variant 0.27
rpoC 764040 p.Ser224Asn missense_variant 0.26
rpoC 764044 c.675T>C synonymous_variant 0.25
rpoC 764059 c.690G>C synonymous_variant 0.26
rpoC 764083 c.714A>G synonymous_variant 0.26
rpoC 764098 c.729A>G synonymous_variant 0.24
rpoC 764099 p.Leu244Ile missense_variant 0.24
rpoC 764110 c.741C>G synonymous_variant 0.27
rpoC 764131 c.762T>C synonymous_variant 0.26
rpoC 764188 c.819A>G synonymous_variant 0.29
rpoC 764194 p.Glu275Asp missense_variant 0.3
rpoC 764203 c.834G>C synonymous_variant 0.3
rpoC 764206 p.Asp279Glu missense_variant 0.29
rpoC 764217 p.Asn283Ser missense_variant 0.27
rpoC 764248 c.879C>G synonymous_variant 0.25
rpoC 764255 c.886C>T synonymous_variant 0.25
rpoC 764266 c.897T>C synonymous_variant 0.24
rpoC 764269 c.900G>C synonymous_variant 0.24
rpoC 764272 c.903G>C synonymous_variant 0.24
rpoC 764278 c.909A>G synonymous_variant 0.24
rpoC 764326 c.957G>C synonymous_variant 0.22
rpoC 764353 c.984G>C synonymous_variant 0.21
rpoC 764365 c.996C>T synonymous_variant 0.2
rpoC 764377 c.1008C>G synonymous_variant 0.18
rpoC 764380 c.1011G>C synonymous_variant 0.17
rpoC 764381 p.Ser338Thr missense_variant 0.17
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.18
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.2
rpoC 764431 c.1062G>C synonymous_variant 0.21
rpoC 764434 c.1065A>G synonymous_variant 0.21
rpoC 764446 c.1077T>C synonymous_variant 0.21
rpoC 764449 c.1080G>C synonymous_variant 0.21
rpoC 764452 c.1083T>C synonymous_variant 0.22
rpoC 764458 c.1089G>C synonymous_variant 0.22
rpoC 764461 c.1092A>G synonymous_variant 0.23
rpoC 764479 c.1110G>A synonymous_variant 0.23
rpoC 764497 c.1128A>G synonymous_variant 0.21
rpoC 764500 c.1131C>G synonymous_variant 0.21
rpoC 764521 c.1152T>C synonymous_variant 0.22
rpoC 764533 c.1164C>G synonymous_variant 0.22
rpoC 764536 c.1167G>T synonymous_variant 0.22
rpoC 764539 c.1170C>G synonymous_variant 0.22
rpoC 764548 c.1179G>A synonymous_variant 0.23
rpoC 764566 c.1197C>G synonymous_variant 0.24
rpoC 764575 c.1206T>G synonymous_variant 0.23
rpoC 764578 c.1209C>G synonymous_variant 0.23
rpoC 764611 c.1242G>C synonymous_variant 0.2
rpoC 764626 c.1257C>T synonymous_variant 0.2
rpoC 764632 c.1263T>C synonymous_variant 0.2
rpoC 764644 c.1275G>C synonymous_variant 0.22
rpoC 764650 c.1281G>T synonymous_variant 0.22
rpoC 764695 c.1326T>C synonymous_variant 0.2
rpoC 764749 c.1380G>C synonymous_variant 0.21
rpoC 764752 c.1383G>C synonymous_variant 0.22
rpoC 764764 c.1395T>C synonymous_variant 0.2
rpoC 764791 c.1422C>G synonymous_variant 0.23
rpoC 764803 c.1434C>T synonymous_variant 0.22
rpoC 764809 c.1440C>T synonymous_variant 0.23
rpoC 764815 c.1446A>G synonymous_variant 0.22
rpoC 764824 c.1455T>C synonymous_variant 0.23
rpoC 764833 c.1464A>G synonymous_variant 0.24
rpoC 764858 c.1489T>C synonymous_variant 0.26
rpoC 764888 c.1519T>C synonymous_variant 0.24
rpoC 764893 c.1524T>C synonymous_variant 0.24
rpoC 764896 c.1527C>T synonymous_variant 0.24
rpoC 764911 c.1542A>G synonymous_variant 0.24
rpoC 764929 c.1560G>A synonymous_variant 0.23
rpoC 764932 c.1563C>G synonymous_variant 0.22
rpoC 764939 c.1570C>T synonymous_variant 0.22
rpoC 764962 c.1593G>C synonymous_variant 0.23
rpoC 764968 c.1599T>C synonymous_variant 0.22
rpoC 765007 c.1638T>G synonymous_variant 0.22
rpoC 765016 c.1647C>G synonymous_variant 0.21
rpoC 765019 c.1650A>G synonymous_variant 0.21
rpoC 765034 c.1665T>C synonymous_variant 0.2
rpoC 765040 c.1671T>C synonymous_variant 0.19
rpoC 765041 c.1672T>C synonymous_variant 0.19
rpoC 765047 c.1678T>C synonymous_variant 0.19
rpoC 765171 p.Pro601Leu missense_variant 1.0
rpoC 765403 c.2034G>C synonymous_variant 0.18
rpoC 765404 p.Leu679Val missense_variant 0.18
rpoC 765409 c.2040T>C synonymous_variant 0.18
rpoC 765412 c.2043T>C synonymous_variant 0.18
rpoC 765421 c.2052C>G synonymous_variant 0.19
rpoC 765478 c.2109T>C synonymous_variant 0.19
rpoC 765499 c.2130C>G synonymous_variant 0.18
rpoC 765533 p.Tyr722His missense_variant 0.21
rpoC 765541 c.2172C>G synonymous_variant 0.2
rpoC 765547 c.2178C>A synonymous_variant 0.2
rpoC 765556 c.2187G>C synonymous_variant 0.21
rpoC 765562 c.2193G>C synonymous_variant 0.21
rpoC 765578 c.2209C>T synonymous_variant 0.21
rpoC 765583 c.2214G>C synonymous_variant 0.22
rpoC 765658 c.2289C>T synonymous_variant 0.23
rpoC 765694 c.2325G>C synonymous_variant 0.2
rpoC 765700 c.2331T>C synonymous_variant 0.2
rpoC 765724 c.2355C>G synonymous_variant 0.22
rpoC 765734 c.2365_2367delTTGinsCTC synonymous_variant 0.2
rpoC 765739 c.2370G>C synonymous_variant 0.2
rpoC 765753 p.Asp795Ala missense_variant 0.21
rpoC 765772 c.2403C>G synonymous_variant 0.2
rpoC 765784 c.2415C>G synonymous_variant 0.21
rpoC 765787 c.2418C>T synonymous_variant 0.21
rpoC 765793 c.2424C>G synonymous_variant 0.2
rpoC 765796 c.2427C>T synonymous_variant 0.2
rpoC 765811 c.2442T>C synonymous_variant 0.21
rpoC 765826 c.2457T>C synonymous_variant 0.23
rpoC 765835 c.2466C>T synonymous_variant 0.24
rpoC 765871 c.2502T>C synonymous_variant 0.23
rpoC 765883 c.2514C>G synonymous_variant 0.24
rpoC 765886 c.2517C>G synonymous_variant 0.24
rpoC 765892 c.2523T>C synonymous_variant 0.25
rpoC 765937 c.2568T>C synonymous_variant 0.24
rpoC 765979 c.2610C>G synonymous_variant 0.21
rpoC 765982 c.2613C>T synonymous_variant 0.21
rpoC 765985 c.2616C>T synonymous_variant 0.21
rpoC 765986 c.2617C>T synonymous_variant 0.21
rpoC 765997 c.2628T>C synonymous_variant 0.22
rpoC 766010 c.2641_2642delTCinsAG synonymous_variant 0.2
rpoC 766021 c.2652G>C synonymous_variant 0.2
rpoC 766027 c.2658G>C synonymous_variant 0.21
rpoC 766057 c.2688C>A synonymous_variant 0.19
rpoC 766083 p.Ala905Glu missense_variant 0.15
rpoC 766363 c.2994G>C synonymous_variant 0.19
rpoC 766381 c.3012C>T synonymous_variant 0.2
rpoC 766384 c.3015A>G synonymous_variant 0.2
rpoC 766387 c.3018C>G synonymous_variant 0.21
rpoC 766393 c.3024C>G synonymous_variant 0.23
rpoC 766426 c.3057C>T synonymous_variant 0.26
rpoC 766444 c.3075C>G synonymous_variant 0.28
rpoC 766447 c.3078T>C synonymous_variant 0.27
rpoC 766462 c.3093G>C synonymous_variant 0.28
rpoC 766483 c.3114G>C synonymous_variant 0.27
rpoC 766486 c.3117A>G synonymous_variant 0.27
rpoC 766492 c.3123T>C synonymous_variant 0.26
rpoC 766495 c.3126C>T synonymous_variant 0.27
rpoC 766522 c.3153C>G synonymous_variant 0.26
rpoC 766528 c.3159T>C synonymous_variant 0.25
rpoC 766531 c.3162G>C synonymous_variant 0.25
rpoC 766573 c.3204T>C synonymous_variant 0.24
rpoC 766582 c.3213C>G synonymous_variant 0.24
rpoC 766585 c.3216T>C synonymous_variant 0.24
rpoC 766591 c.3222A>G synonymous_variant 0.23
rpoC 766594 c.3225G>C synonymous_variant 0.23
rpoC 766607 p.Ile1080Leu missense_variant 0.23
rpoC 766630 c.3261G>T synonymous_variant 0.21
rpoC 766645 c.3276A>G synonymous_variant 0.23
rpoC 766651 c.3282T>C synonymous_variant 0.23
rpoC 766657 c.3288A>G synonymous_variant 0.22
rpoC 766666 c.3297C>G synonymous_variant 0.22
rpoC 766672 c.3303T>C synonymous_variant 0.21
rpoC 766708 c.3339A>G synonymous_variant 0.2
rpoC 766726 c.3357T>C synonymous_variant 0.19
rpoC 766738 c.3369G>C synonymous_variant 0.18
rpoC 766765 c.3396A>C synonymous_variant 0.17
rpoC 766774 c.3405T>C synonymous_variant 0.18
rpoC 766804 c.3435A>G synonymous_variant 0.18
rpoC 766861 c.3492G>C synonymous_variant 0.21
rpoC 766864 c.3495G>C synonymous_variant 0.21
rpoC 766894 c.3525T>C synonymous_variant 0.23
rpoC 766895 c.3526T>C synonymous_variant 0.23
rpoC 766900 c.3531T>C synonymous_variant 0.23
rpoC 766907 c.3538C>T synonymous_variant 0.24
rpoC 766933 c.3564A>G synonymous_variant 0.22
rpoC 766945 c.3576A>G synonymous_variant 0.23
rpoC 766963 c.3594T>C synonymous_variant 0.22
rpoC 766972 c.3603G>C synonymous_variant 0.23
rpoC 766978 c.3609C>A synonymous_variant 0.22
rpoC 766996 c.3627C>T synonymous_variant 0.22
rpoC 767002 c.3633G>A synonymous_variant 0.21
rpoC 767032 c.3663G>T synonymous_variant 0.23
rpoC 767035 c.3666G>T synonymous_variant 0.23
rpoC 767059 c.3690T>G synonymous_variant 0.26
rpoC 767062 c.3693C>A synonymous_variant 0.26
rpoC 767098 c.3729T>C synonymous_variant 0.27
rpoC 767113 c.3744G>C synonymous_variant 0.26
rpoC 767119 c.3750A>G synonymous_variant 0.27
rpoC 767134 c.3765C>A synonymous_variant 0.24
rpoC 767149 c.3780C>G synonymous_variant 0.22
rpoC 767158 c.3789T>C synonymous_variant 0.2
rpoC 767167 c.3798C>G synonymous_variant 0.21
rpoC 767180 p.Ala1271Gln missense_variant 0.19
rpoC 767191 c.3822C>G synonymous_variant 0.2
rpoC 767209 c.3840T>C synonymous_variant 0.18
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781649 c.90T>C synonymous_variant 0.17
rpsL 781655 c.96T>C synonymous_variant 0.17
rpsL 781682 c.123T>C synonymous_variant 0.21
rpsL 781709 c.150G>C synonymous_variant 0.2
rpsL 781715 c.156T>C synonymous_variant 0.19
rpsL 781718 c.159C>G synonymous_variant 0.19
rpsL 781728 c.169T>C synonymous_variant 0.19
rpsL 781736 c.177T>C synonymous_variant 0.19
rpsL 781742 c.183C>G synonymous_variant 0.19
rpsL 781751 c.192G>C synonymous_variant 0.18
rpsL 781754 c.195G>C synonymous_variant 0.18
rpsL 781760 c.201T>C synonymous_variant 0.19
rpsL 781808 c.249C>T synonymous_variant 0.2
rpsL 781811 c.252C>T synonymous_variant 0.2
rpsL 781817 c.258G>A synonymous_variant 0.19
rpsL 781820 c.261G>C synonymous_variant 0.19
rpsL 781832 c.273T>C synonymous_variant 0.2
rpsL 781838 c.279G>C synonymous_variant 0.18
rpsL 781841 c.282C>G synonymous_variant 0.18
rpsL 781865 c.306G>C synonymous_variant 0.21
rpsL 781868 c.309T>C synonymous_variant 0.21
rpsL 781871 c.312G>C synonymous_variant 0.21
rpsL 781892 c.333A>G synonymous_variant 0.25
rpsL 781898 c.339A>T synonymous_variant 0.26
rpsL 781916 c.357T>C synonymous_variant 0.27
rpsL 781929 p.Gly124Ser missense_variant 0.27
rpsL 781933 c.374G>A splice_region_variant&stop_retained_variant 0.28
rplC 800612 c.-197A>G upstream_gene_variant 0.19
rplC 800618 c.-191T>C upstream_gene_variant 0.2
rplC 800648 c.-161A>T upstream_gene_variant 0.2
rplC 800654 c.-155T>C upstream_gene_variant 0.2
rplC 800690 c.-119C>T upstream_gene_variant 0.17
rplC 800693 c.-116A>G upstream_gene_variant 0.17
rplC 800708 c.-101C>T upstream_gene_variant 0.16
rplC 800723 c.-86C>G upstream_gene_variant 0.16
rplC 800735 c.-74C>G upstream_gene_variant 0.17
rplC 801210 c.402T>G synonymous_variant 0.17
rplC 801249 c.441T>G synonymous_variant 0.18
rplC 801267 c.459A>C synonymous_variant 0.18
rplC 801270 c.462T>C synonymous_variant 0.18
rplC 801276 c.468G>C synonymous_variant 0.18
rplC 801309 c.501C>T synonymous_variant 0.18
rplC 801312 c.504G>C synonymous_variant 0.18
rplC 801324 c.516T>C synonymous_variant 0.16
fbiC 1303509 c.579G>C synonymous_variant 0.18
fbiC 1303512 c.582T>C synonymous_variant 0.18
fbiC 1303545 c.615A>G synonymous_variant 0.21
fbiC 1303575 c.645G>C synonymous_variant 0.18
fbiC 1303581 c.651G>C synonymous_variant 0.18
fbiC 1303584 c.654C>G synonymous_variant 0.19
fbiC 1303590 c.660A>G synonymous_variant 0.18
fbiC 1303614 c.684C>T synonymous_variant 0.15
fbiC 1303788 c.858T>C synonymous_variant 0.16
fbiC 1303789 p.Ile287Val missense_variant 0.16
fbiC 1303794 c.864A>G synonymous_variant 0.17
fbiC 1303818 c.888C>G synonymous_variant 0.19
fbiC 1303848 c.918C>T synonymous_variant 0.15
fbiC 1303854 c.924T>C synonymous_variant 0.17
fbiC 1303860 c.930A>G synonymous_variant 0.19
fbiC 1303869 c.939T>C synonymous_variant 0.19
fbiC 1303884 c.954T>G synonymous_variant 0.2
fbiC 1303890 c.960G>C synonymous_variant 0.21
fbiC 1303905 c.975G>C synonymous_variant 0.19
fbiC 1303908 c.978C>G synonymous_variant 0.19
fbiC 1303914 c.984C>G synonymous_variant 0.19
fbiC 1303935 c.1005G>C synonymous_variant 0.17
fbiC 1303948 p.Gly340Arg missense_variant 0.16
fbiC 1303961 p.Arg344Leu missense_variant 0.16
fbiC 1303969 p.Val347Ile missense_variant 0.16
fbiC 1303980 c.1050G>C synonymous_variant 0.16
fbiC 1304811 c.1881C>G synonymous_variant 0.17
fbiC 1304817 c.1887T>C synonymous_variant 0.17
fbiC 1304829 c.1899T>C synonymous_variant 0.19
fbiC 1304856 c.1926C>G synonymous_variant 0.23
fbiC 1304869 c.1939C>T synonymous_variant 0.24
fbiC 1304893 p.Gly655Ser missense_variant 0.22
fbiC 1304904 c.1974G>A synonymous_variant 0.23
fbiC 1304911 c.1981C>T synonymous_variant 0.22
fbiC 1304916 c.1986T>C synonymous_variant 0.21
fbiC 1304925 c.1995G>C synonymous_variant 0.2
fbiC 1304928 c.1998T>C synonymous_variant 0.2
fbiC 1304937 c.2007G>C synonymous_variant 0.19
fbiC 1304940 c.2010A>G synonymous_variant 0.2
fbiC 1304958 c.2028T>G synonymous_variant 0.23
fbiC 1304970 c.2040G>C synonymous_variant 0.23
fbiC 1304994 c.2064A>G synonymous_variant 0.17
fbiC 1304995 p.Leu689Met missense_variant 0.17
fbiC 1305075 c.2145T>C synonymous_variant 0.17
fbiC 1305078 c.2148A>G synonymous_variant 0.18
fbiC 1305096 c.2166T>C synonymous_variant 0.17
fbiC 1305099 c.2169T>C synonymous_variant 0.17
fbiC 1305126 c.2196T>C synonymous_variant 0.17
fbiC 1305150 c.2220C>G synonymous_variant 0.17
fbiC 1305153 c.2223G>C synonymous_variant 0.18
fbiC 1305173 p.Asn748Ser missense_variant 0.17
fbiC 1305177 c.2247A>G synonymous_variant 0.17
fbiC 1305198 c.2268G>T synonymous_variant 0.16
fbiC 1305204 c.2274C>G synonymous_variant 0.17
fbiC 1305215 p.Ser762Thr missense_variant 0.17
fbiC 1305219 c.2289T>C synonymous_variant 0.17
embR 1417019 p.Cys110Tyr missense_variant 1.0
atpE 1461227 c.183G>A synonymous_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.15
rrs 1472028 n.183A>T non_coding_transcript_exon_variant 0.2
rrs 1472031 n.186G>A non_coding_transcript_exon_variant 0.19
rrs 1472033 n.188A>G non_coding_transcript_exon_variant 0.19
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 0.19
rrs 1472040 n.195T>C non_coding_transcript_exon_variant 0.19
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.19
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.19
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.2
rrs 1472489 n.644A>G non_coding_transcript_exon_variant 0.2
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 0.16
rrs 1472858 n.1013G>T non_coding_transcript_exon_variant 0.15
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.26
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.2
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.28
rrl 1473815 n.158T>C non_coding_transcript_exon_variant 0.28
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.27
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.24
rrl 1473899 n.242A>C non_coding_transcript_exon_variant 0.25
rrl 1473924 n.267_268insT non_coding_transcript_exon_variant 0.25
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.24
rrl 1473986 n.329T>C non_coding_transcript_exon_variant 0.23
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.25
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.25
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.25
rrl 1474018 n.361G>A non_coding_transcript_exon_variant 0.24
rrl 1474040 n.383G>A non_coding_transcript_exon_variant 0.24
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.21
rrl 1474111 n.454T>C non_coding_transcript_exon_variant 0.19
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 0.19
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.18
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.21
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.2
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.21
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.27
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.26
rrl 1474709 n.1052G>T non_coding_transcript_exon_variant 0.77
rrl 1474717 n.1060A>T non_coding_transcript_exon_variant 0.22
rrl 1474794 n.1137C>A non_coding_transcript_exon_variant 0.21
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.23
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.19
rrl 1475088 n.1431A>T non_coding_transcript_exon_variant 0.17
rrl 1475202 n.1545G>C non_coding_transcript_exon_variant 0.17
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.15
rrl 1475220 n.1563G>A non_coding_transcript_exon_variant 0.18
rrl 1475249 n.1592T>C non_coding_transcript_exon_variant 0.2
rrl 1475252 n.1595C>T non_coding_transcript_exon_variant 0.19
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 0.2
rrl 1475275 n.1618C>T non_coding_transcript_exon_variant 0.19
rrl 1475276 n.1619T>C non_coding_transcript_exon_variant 0.19
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.17
rrl 1475297 n.1640C>T non_coding_transcript_exon_variant 0.17
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.18
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.19
rrl 1475366 n.1709G>A non_coding_transcript_exon_variant 0.18
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.19
rrl 1475401 n.1745delC non_coding_transcript_exon_variant 0.18
rrl 1475405 n.1748A>T non_coding_transcript_exon_variant 0.18
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.23
rrl 1475436 n.1779C>T non_coding_transcript_exon_variant 0.22
rrl 1475532 n.1875A>G non_coding_transcript_exon_variant 0.24
rrl 1475573 n.1916G>A non_coding_transcript_exon_variant 0.22
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.26
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.27
rrl 1475617 n.1960C>G non_coding_transcript_exon_variant 0.26
rrl 1475625 n.1968G>C non_coding_transcript_exon_variant 0.26
rrl 1475655 n.1998T>C non_coding_transcript_exon_variant 0.26
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.26
rrl 1475758 n.2104delC non_coding_transcript_exon_variant 0.2
rrl 1475765 n.2111delG non_coding_transcript_exon_variant 0.22
rrl 1475883 n.2226A>G non_coding_transcript_exon_variant 0.23
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.19
rrl 1476035 n.2378G>A non_coding_transcript_exon_variant 0.16
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.2
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.19
rrl 1476095 n.2438C>G non_coding_transcript_exon_variant 0.18
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.19
rrl 1476256 n.2599A>C non_coding_transcript_exon_variant 0.22
rrl 1476583 n.2926G>C non_coding_transcript_exon_variant 0.22
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.2
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.22
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 0.18
rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 0.17
rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 0.17
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 0.17
rrl 1476711 n.3054G>A non_coding_transcript_exon_variant 0.16
rrl 1476719 n.3062C>T non_coding_transcript_exon_variant 0.15
inhA 1673808 c.-394A>G upstream_gene_variant 0.17
fabG1 1673870 p.Ser144Ile missense_variant 0.16
inhA 1673898 c.-304C>T upstream_gene_variant 0.18
inhA 1673901 c.-301A>G upstream_gene_variant 0.18
fabG1 1673905 p.Ser156Ala missense_variant 0.18
inhA 1673916 c.-286A>C upstream_gene_variant 0.17
fabG1 1673917 p.Val160Leu missense_variant 0.17
inhA 1673922 c.-280T>C upstream_gene_variant 0.17
fabG1 1674006 p.Asp189Glu missense_variant 0.16
inhA 1674024 c.-178T>C upstream_gene_variant 0.16
inhA 1674336 c.135G>C synonymous_variant 0.18
inhA 1674342 c.141T>C synonymous_variant 0.18
inhA 1674348 c.147C>G synonymous_variant 0.2
inhA 1674352 p.Thr51Ala missense_variant 0.21
inhA 1674368 p.Ala56Glu missense_variant 0.16
inhA 1674375 c.174C>G synonymous_variant 0.18
inhA 1674382 p.Leu61Ile missense_variant 0.19
inhA 1674419 p.Ser73Thr missense_variant 0.22
inhA 1674421 c.220T>C synonymous_variant 0.22
inhA 1674428 p.Gly76Glu missense_variant 0.22
inhA 1674440 p.Glu80Ala missense_variant 0.21
inhA 1674443 p.Ala81Glu missense_variant 0.21
inhA 1674450 c.249G>C synonymous_variant 0.22
inhA 1674455 p.Gly85Asp missense_variant 0.23
inhA 1674465 c.264C>G synonymous_variant 0.24
inhA 1674471 c.270G>C synonymous_variant 0.23
inhA 1674480 c.279T>C synonymous_variant 0.22
inhA 1674486 c.285T>C synonymous_variant 0.2
inhA 1674489 c.288G>C synonymous_variant 0.19
inhA 1674537 c.336C>A synonymous_variant 0.17
inhA 1674542 p.Ala114Glu missense_variant 0.18
inhA 1674552 c.351C>G synonymous_variant 0.18
inhA 1674555 c.354G>A synonymous_variant 0.19
inhA 1674561 c.360C>T synonymous_variant 0.18
inhA 1674573 c.372G>C synonymous_variant 0.2
inhA 1674575 p.Tyr125Phe missense_variant 0.21
inhA 1674582 c.381T>C synonymous_variant 0.21
inhA 1674585 c.384T>C synonymous_variant 0.21
inhA 1674589 p.Met130Leu missense_variant 0.22
inhA 1674624 c.423A>T synonymous_variant 0.18
inhA 1674627 c.426T>C synonymous_variant 0.18
inhA 1674651 c.450C>T synonymous_variant 0.21
inhA 1674655 c.454_456delAGCinsTCG synonymous_variant 0.21
inhA 1674660 c.459G>T synonymous_variant 0.21
inhA 1674690 c.489C>G synonymous_variant 0.27
inhA 1674703 c.502T>C synonymous_variant 0.27
inhA 1674708 c.507G>A synonymous_variant 0.27
inhA 1674718 c.517A>C synonymous_variant 0.27
inhA 1674738 c.537C>G synonymous_variant 0.23
inhA 1674741 c.540C>T synonymous_variant 0.22
inhA 1674742 p.Lys181Pro missense_variant 0.23
inhA 1674750 c.549T>C synonymous_variant 0.24
inhA 1674756 c.555T>C synonymous_variant 0.26
inhA 1674771 c.570C>G synonymous_variant 0.26
inhA 1674774 c.573A>G synonymous_variant 0.26
inhA 1674780 c.579T>G synonymous_variant 0.27
inhA 1674801 c.600T>C synonymous_variant 0.3
inhA 1674816 c.615T>C synonymous_variant 0.27
inhA 1674846 p.Ile215Met missense_variant 0.24
inhA 1674870 c.669T>C synonymous_variant 0.21
inhA 1674879 c.678T>G synonymous_variant 0.19
rpsA 1833595 c.54T>G synonymous_variant 0.17
rpsA 1833604 c.63C>T synonymous_variant 0.16
rpsA 1833610 c.69C>T synonymous_variant 0.16
rpsA 1833661 c.120A>G synonymous_variant 0.23
rpsA 1833667 c.126C>G synonymous_variant 0.24
rpsA 1833724 c.183C>G synonymous_variant 0.25
rpsA 1833727 c.186G>C synonymous_variant 0.25
rpsA 1833742 c.201A>G synonymous_variant 0.24
rpsA 1833745 c.204G>C synonymous_variant 0.26
rpsA 1833790 c.249T>C synonymous_variant 0.26
rpsA 1833793 c.252C>T synonymous_variant 0.27
rpsA 1833802 c.261A>G synonymous_variant 0.27
rpsA 1833811 c.270G>C synonymous_variant 0.29
rpsA 1833841 c.300C>G synonymous_variant 0.27
rpsA 1833856 c.315A>G synonymous_variant 0.27
rpsA 1833874 c.333T>C synonymous_variant 0.24
rpsA 1833928 c.387G>A synonymous_variant 0.26
rpsA 1833940 c.399C>G synonymous_variant 0.26
rpsA 1833971 c.430C>T synonymous_variant 0.24
rpsA 1833979 c.438T>C synonymous_variant 0.24
rpsA 1834000 c.459G>C synonymous_variant 0.24
rpsA 1834012 c.471G>C synonymous_variant 0.23
rpsA 1834015 c.474G>C synonymous_variant 0.23
rpsA 1834021 c.480C>T synonymous_variant 0.23
rpsA 1834030 c.489C>G synonymous_variant 0.22
rpsA 1834102 c.561T>G synonymous_variant 0.16
rpsA 1834105 c.564C>G synonymous_variant 0.17
rpsA 1834123 c.582C>G synonymous_variant 0.18
rpsA 1834144 c.603G>A synonymous_variant 0.16
rpsA 1834177 c.636A>C synonymous_variant 0.17
rpsA 1834186 c.645C>G synonymous_variant 0.18
rpsA 1834189 c.648G>C synonymous_variant 0.19
rpsA 1834195 c.654G>C synonymous_variant 0.22
rpsA 1834222 c.681T>C synonymous_variant 0.23
rpsA 1834234 c.693G>C synonymous_variant 0.22
rpsA 1834249 c.708T>C synonymous_variant 0.21
rpsA 1834261 c.720A>G synonymous_variant 0.21
rpsA 1834264 c.723G>C synonymous_variant 0.2
rpsA 1834297 c.756C>G synonymous_variant 0.22
rpsA 1834303 c.762T>G synonymous_variant 0.22
rpsA 1834306 c.765T>C synonymous_variant 0.22
rpsA 1834319 p.Val260Ile missense_variant 0.79
rpsA 1834348 c.807T>C synonymous_variant 0.25
rpsA 1834366 c.825A>G synonymous_variant 0.26
rpsA 1834378 c.837T>C synonymous_variant 0.25
rpsA 1834411 c.870T>G synonymous_variant 0.27
rpsA 1834417 c.876G>C synonymous_variant 0.27
rpsA 1834423 c.882G>C synonymous_variant 0.26
rpsA 1834451 c.910T>C synonymous_variant 0.28
rpsA 1834459 c.918G>C synonymous_variant 0.29
rpsA 1834465 c.924T>C synonymous_variant 0.29
rpsA 1834468 c.927A>G synonymous_variant 0.29
rpsA 1834474 c.933C>G synonymous_variant 0.28
rpsA 1834489 c.948T>C synonymous_variant 0.27
rpsA 1834528 c.987T>C synonymous_variant 0.25
rpsA 1834546 c.1005T>C synonymous_variant 0.26
rpsA 1834555 c.1014T>C synonymous_variant 0.26
rpsA 1834609 c.1068T>C synonymous_variant 0.25
rpsA 1834612 c.1071G>A synonymous_variant 0.26
rpsA 1834633 c.1092A>G synonymous_variant 0.23
rpsA 1834639 c.1098T>C synonymous_variant 0.23
rpsA 1834690 c.1149T>C synonymous_variant 0.22
rpsA 1834751 p.Leu404Ile missense_variant 0.16
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102305 c.738T>C synonymous_variant 0.17
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2167983 p.Gly877Asp missense_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 1.0
kasA 2518220 c.106C>T synonymous_variant 0.16
kasA 2518234 c.120G>A synonymous_variant 0.19
kasA 2518245 p.His44Arg missense_variant 0.21
kasA 2518248 p.Ala45Val missense_variant 0.22
kasA 2518255 c.141A>G synonymous_variant 0.21
kasA 2518273 c.159G>A synonymous_variant 0.21
kasA 2518279 c.165T>C synonymous_variant 0.19
kasA 2518280 c.166C>T synonymous_variant 0.18
kasA 2518283 p.Ala57Pro missense_variant 0.18
kasA 2518297 c.183C>T synonymous_variant 0.2
kasA 2518300 c.186T>A synonymous_variant 0.2
kasA 2518312 p.Asp66Glu missense_variant 0.19
kasA 2518315 c.201G>C synonymous_variant 0.18
kasA 2518321 c.207C>T synonymous_variant 0.17
kasA 2518323 p.Ser70Asn missense_variant 0.17
kasA 2518334 c.220C>A synonymous_variant 0.16
kasA 2518561 c.447T>C synonymous_variant 0.19
kasA 2518567 c.453G>T synonymous_variant 0.19
kasA 2518574 p.Ile154Val missense_variant 0.21
kasA 2518588 c.474T>C synonymous_variant 0.21
kasA 2518591 c.477G>C synonymous_variant 0.22
kasA 2518603 c.489G>C synonymous_variant 0.22
kasA 2518624 c.510C>G synonymous_variant 0.21
kasA 2518627 c.513T>C synonymous_variant 0.21
kasA 2518642 c.528A>G synonymous_variant 0.24
kasA 2518663 c.549T>C synonymous_variant 0.22
kasA 2518708 c.594C>G synonymous_variant 0.23
kasA 2518711 c.597A>G synonymous_variant 0.23
kasA 2518714 c.600A>C synonymous_variant 0.24
kasA 2518747 c.633C>G synonymous_variant 0.25
kasA 2518756 c.642G>T synonymous_variant 0.27
kasA 2518783 c.669T>C synonymous_variant 0.25
kasA 2518789 c.675G>T synonymous_variant 0.26
kasA 2518795 c.681C>G synonymous_variant 0.26
kasA 2518798 c.684G>T synonymous_variant 0.26
kasA 2518825 c.711T>C synonymous_variant 0.25
kasA 2518837 c.723G>A synonymous_variant 0.23
kasA 2518843 c.729T>G synonymous_variant 0.22
kasA 2518864 c.750G>C synonymous_variant 0.19
kasA 2518867 c.753G>A synonymous_variant 0.18
ahpC 2726051 c.-142G>A upstream_gene_variant 0.99
ahpC 2726070 c.-123G>A upstream_gene_variant 1.0
folC 2746351 c.1248C>G synonymous_variant 0.17
folC 2746360 c.1239T>C synonymous_variant 0.16
folC 2746378 c.1221G>T synonymous_variant 0.16
folC 2746381 c.1218C>T synonymous_variant 0.15
folC 2747395 c.204T>C synonymous_variant 0.18
folC 2747412 p.Ser63Gly missense_variant 0.19
folC 2747414 p.Arg62Leu missense_variant 0.2
folC 2747419 c.180C>G synonymous_variant 0.2
folC 2747422 c.177G>C synonymous_variant 0.2
folC 2747425 c.174C>G synonymous_variant 0.2
folC 2747442 c.157T>C synonymous_variant 0.19
folC 2747443 c.156G>C synonymous_variant 0.19
Rv2752c 3064632 c.1560C>T synonymous_variant 0.97
Rv2752c 3065457 c.735A>G synonymous_variant 0.17
Rv2752c 3065463 c.729T>C synonymous_variant 0.16
Rv2752c 3065487 c.705T>G synonymous_variant 0.17
Rv2752c 3065490 c.702A>C synonymous_variant 0.17
Rv2752c 3065493 c.699G>C synonymous_variant 0.17
Rv2752c 3065496 c.696G>C synonymous_variant 0.17
Rv2752c 3065499 c.693A>C synonymous_variant 0.18
Rv2752c 3065508 c.684T>C synonymous_variant 0.2
Rv2752c 3065511 c.681G>C synonymous_variant 0.19
Rv2752c 3065517 c.675C>G synonymous_variant 0.19
Rv2752c 3065528 c.664C>T synonymous_variant 0.21
Rv2752c 3065532 c.660A>G synonymous_variant 0.2
Rv2752c 3065538 c.654G>C synonymous_variant 0.22
Rv2752c 3065550 c.642G>C synonymous_variant 0.21
Rv2752c 3065553 c.639A>G synonymous_variant 0.19
Rv2752c 3065576 p.Ala206Ser missense_variant 0.19
Rv2752c 3065577 c.615C>T synonymous_variant 0.18
Rv2752c 3065580 c.612G>C synonymous_variant 0.17
Rv2752c 3065595 p.Leu199Phe missense_variant 0.21
Rv2752c 3065610 p.Thr194Ala missense_variant 0.18
Rv2752c 3065619 c.573C>G synonymous_variant 0.18
Rv2752c 3065634 c.558G>C synonymous_variant 0.18
Rv2752c 3065637 c.555A>G synonymous_variant 0.17
Rv2752c 3065640 c.552T>C synonymous_variant 0.18
Rv2752c 3065649 c.543T>G synonymous_variant 0.17
Rv2752c 3065652 c.540C>G synonymous_variant 0.16
Rv2752c 3065659 p.Pro178Leu missense_variant 0.15
Rv2752c 3066141 c.51G>C synonymous_variant 0.16
Rv2752c 3066156 c.36C>T synonymous_variant 0.15
Rv2752c 3066171 c.21G>A synonymous_variant 0.16
Rv2752c 3066176 p.Pro6Thr missense_variant 0.16
Rv2752c 3066195 c.-4A>G upstream_gene_variant 0.17
Rv2752c 3066231 c.-40G>C upstream_gene_variant 0.17
Rv2752c 3066994 c.-804_-803delCAinsGG upstream_gene_variant 0.17
Rv2752c 3067011 c.-820C>A upstream_gene_variant 0.16
thyX 3067244 c.702C>G synonymous_variant 0.17
thyX 3067249 p.Thr233Ser missense_variant 0.17
thyX 3067271 c.675G>C synonymous_variant 0.19
thyX 3067274 c.672C>G synonymous_variant 0.19
thyX 3067277 c.669C>G synonymous_variant 0.19
thyX 3067284 p.Ala221Gly missense_variant 0.2
thyX 3067287 p.Ala220Val missense_variant 0.2
thyX 3067304 c.642A>G synonymous_variant 0.21
thyX 3067316 c.630A>C synonymous_variant 0.22
thyX 3067349 c.597G>C synonymous_variant 0.22
thyX 3067355 c.591A>G synonymous_variant 0.21
thyX 3067373 c.573C>G synonymous_variant 0.2
thyX 3067406 c.540A>G synonymous_variant 0.21
thyX 3067430 c.516C>G synonymous_variant 0.21
thyX 3067439 c.507A>G synonymous_variant 0.2
thyX 3067445 c.501C>G synonymous_variant 0.19
thyX 3067457 c.489C>G synonymous_variant 0.19
thyX 3067466 c.480G>A synonymous_variant 0.19
thyX 3067470 p.Asn159Ser missense_variant 0.18
thyX 3067472 c.474C>G synonymous_variant 0.18
thyX 3067793 c.153T>C synonymous_variant 0.16
thyX 3067802 c.144C>G synonymous_variant 0.17
thyX 3067814 c.132T>C synonymous_variant 0.16
thyX 3067826 c.120C>G synonymous_variant 0.15
thyA 3073929 c.543T>C synonymous_variant 0.17
thyA 3073953 c.519T>C synonymous_variant 0.19
thyA 3073956 c.516G>C synonymous_variant 0.18
thyA 3073959 c.513T>C synonymous_variant 0.18
thyA 3073968 c.504C>G synonymous_variant 0.19
thyA 3073977 c.495A>G synonymous_variant 0.18
thyA 3073989 c.483T>C synonymous_variant 0.17
thyA 3074004 c.468T>C synonymous_variant 0.18
thyA 3074010 c.462C>G synonymous_variant 0.18
thyA 3074031 c.441T>C synonymous_variant 0.18
ald 3086788 c.-32T>C upstream_gene_variant 1.0
Rv3083 3448714 p.Asp71His missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474597 c.591C>A synonymous_variant 0.99
fprA 3475159 p.Asn385Asp missense_variant 1.0
rpoA 3877587 c.921A>G synonymous_variant 0.18
rpoA 3877613 p.Ile299Val missense_variant 0.2
rpoA 3877638 c.870T>C synonymous_variant 0.17
rpoA 3877656 c.852T>C synonymous_variant 0.18
rpoA 3877677 p.Ala277Thr missense_variant 0.16
rpoA 3877680 c.828G>C synonymous_variant 0.17
rpoA 3877686 c.822A>G synonymous_variant 0.18
rpoA 3877692 c.816G>C synonymous_variant 0.21
rpoA 3877704 c.804G>C synonymous_variant 0.22
rpoA 3877737 c.771G>C synonymous_variant 0.22
rpoA 3877743 c.765T>C synonymous_variant 0.22
rpoA 3877746 c.762G>C synonymous_variant 0.23
rpoA 3877764 c.744C>G synonymous_variant 0.21
rpoA 3877770 c.738A>G synonymous_variant 0.21
rpoA 3877776 c.732T>C synonymous_variant 0.21
rpoA 3877782 c.726T>C synonymous_variant 0.22
rpoA 3877818 c.690A>G synonymous_variant 0.25
rpoA 3877839 c.669G>C synonymous_variant 0.21
rpoA 3877857 c.651G>A synonymous_variant 0.2
rpoA 3877875 c.633T>C synonymous_variant 0.21
rpoA 3877881 c.627G>C synonymous_variant 0.21
rpoA 3877900 p.Ser203Thr missense_variant 0.19
rpoA 3877905 c.603A>G synonymous_variant 0.19
rpoA 3877908 p.Asn200Ser missense_variant 0.19
rpoA 3877920 c.588G>C synonymous_variant 0.2
rpoA 3877962 c.546G>T synonymous_variant 0.25
rpoA 3877986 c.522G>C synonymous_variant 0.25
rpoA 3877989 c.519A>G synonymous_variant 0.25
rpoA 3878001 c.507A>G synonymous_variant 0.24
rpoA 3878019 c.489A>G synonymous_variant 0.22
rpoA 3878022 c.486T>C synonymous_variant 0.22
rpoA 3878028 c.480G>C synonymous_variant 0.22
rpoA 3878031 c.477T>C synonymous_variant 0.22
rpoA 3878040 c.468T>C synonymous_variant 0.21
rpoA 3878046 c.462T>C synonymous_variant 0.2
rpoA 3878055 c.453A>G synonymous_variant 0.22
rpoA 3878070 c.438T>C synonymous_variant 0.21
rpoA 3878082 c.426T>C synonymous_variant 0.21
rpoA 3878100 c.408C>G synonymous_variant 0.18
rpoA 3878103 c.405A>G synonymous_variant 0.18
rpoA 3878106 c.402G>C synonymous_variant 0.18
rpoA 3878118 c.390T>C synonymous_variant 0.18
rpoA 3878127 c.381G>C synonymous_variant 0.18
rpoA 3878130 c.378C>G synonymous_variant 0.18
rpoA 3878143 p.Gly122Asp missense_variant 0.22
rpoA 3878160 c.348C>G synonymous_variant 0.22
rpoA 3878184 c.324C>T synonymous_variant 0.23
rpoA 3878187 c.321C>G synonymous_variant 0.24
rpoA 3878193 c.315T>C synonymous_variant 0.24
rpoA 3878199 c.309T>C synonymous_variant 0.24
rpoA 3878205 c.303T>C synonymous_variant 0.24
rpoA 3878217 c.291A>G synonymous_variant 0.25
rpoA 3878256 c.252G>C synonymous_variant 0.26
rpoA 3878264 p.Ser82Gly missense_variant 0.25
rpoA 3878271 c.237T>C synonymous_variant 0.23
rpoA 3878283 p.Glu75Asp missense_variant 0.23
rpoA 3878292 c.216T>C synonymous_variant 0.22
rpoA 3878298 c.210A>G synonymous_variant 0.23
rpoA 3878301 c.207C>G synonymous_variant 0.23
rpoA 3878304 c.204G>C synonymous_variant 0.23
rpoA 3878313 c.195G>C synonymous_variant 0.25
rpoA 3878322 c.186A>G synonymous_variant 0.26
rpoA 3878331 c.177A>G synonymous_variant 0.26
rpoA 3878334 c.174T>C synonymous_variant 0.26
rpoA 3878337 c.171T>C synonymous_variant 0.26
rpoA 3878364 c.144A>C synonymous_variant 0.27
rpoA 3878370 c.138T>C synonymous_variant 0.29
rpoA 3878385 c.123C>G synonymous_variant 0.27
rpoA 3878391 c.117T>G synonymous_variant 0.25
rpoA 3878415 c.93C>T synonymous_variant 0.23
rpoA 3878424 c.84G>C synonymous_variant 0.22
rpoA 3878432 c.76C>T synonymous_variant 0.22
rpoA 3878436 c.72A>G synonymous_variant 0.22
rpoA 3878442 c.66G>C synonymous_variant 0.22
rpoA 3878454 c.54A>G synonymous_variant 0.21
rpoA 3878458 p.Asn17Thr missense_variant 0.2
rpoA 3878472 p.Asp12Glu missense_variant 0.16
rpoA 3878630 c.-124delC upstream_gene_variant 0.99
ddn 3986648 c.-196C>G upstream_gene_variant 0.17
ddn 3986660 c.-184C>T upstream_gene_variant 0.15
ddn 3987083 c.240C>T synonymous_variant 0.15
ddn 3987086 c.243C>T synonymous_variant 0.15
clpC1 4038640 p.Asp689Asn missense_variant 0.16
clpC1 4038644 p.Glu687Asp missense_variant 0.17
clpC1 4038653 c.2052C>T synonymous_variant 0.16
clpC1 4038661 p.Ser682Thr missense_variant 0.15
clpC1 4038671 c.2034T>G synonymous_variant 0.17
clpC1 4038674 c.2031C>G synonymous_variant 0.17
clpC1 4038683 c.2022T>C synonymous_variant 0.19
clpC1 4038701 c.2004G>C synonymous_variant 0.18
clpC1 4038704 c.2001T>C synonymous_variant 0.18
clpC1 4038713 c.1992T>C synonymous_variant 0.18
clpC1 4038721 c.1984C>T synonymous_variant 0.19
clpC1 4038740 c.1965G>C synonymous_variant 0.19
clpC1 4038773 c.1932T>C synonymous_variant 0.2
clpC1 4038782 c.1923G>T synonymous_variant 0.2
clpC1 4038790 c.1915C>T synonymous_variant 0.22
clpC1 4038812 c.1893T>C synonymous_variant 0.24
clpC1 4038845 c.1860G>C synonymous_variant 0.21
clpC1 4038848 c.1857C>T synonymous_variant 0.21
clpC1 4038860 c.1845G>C synonymous_variant 0.23
clpC1 4038878 c.1827A>G synonymous_variant 0.25
clpC1 4038884 c.1821C>T synonymous_variant 0.25
clpC1 4038899 c.1806C>G synonymous_variant 0.26
clpC1 4038908 c.1797C>G synonymous_variant 0.27
clpC1 4038914 c.1791G>C synonymous_variant 0.27
clpC1 4038923 c.1780_1782delCTAinsTTG synonymous_variant 0.26
clpC1 4038953 c.1752A>G synonymous_variant 0.25
clpC1 4038956 c.1749T>C synonymous_variant 0.25
clpC1 4038965 c.1740T>C synonymous_variant 0.25
clpC1 4038971 c.1734T>C synonymous_variant 0.24
clpC1 4038974 c.1731T>C synonymous_variant 0.24
clpC1 4038989 c.1716T>C synonymous_variant 0.21
clpC1 4038997 c.1708T>C synonymous_variant 0.2
clpC1 4039022 c.1683A>G synonymous_variant 0.19
clpC1 4039070 c.1635G>C synonymous_variant 0.21
clpC1 4039073 c.1632C>G synonymous_variant 0.2
clpC1 4039094 c.1611C>G synonymous_variant 0.19
clpC1 4039103 c.1602T>C synonymous_variant 0.18
clpC1 4039106 c.1599G>C synonymous_variant 0.18
clpC1 4039112 c.1593C>G synonymous_variant 0.18
clpC1 4039121 c.1584T>C synonymous_variant 0.19
clpC1 4039136 c.1569C>T synonymous_variant 0.18
clpC1 4039139 p.Glu522Val missense_variant 0.18
clpC1 4039142 c.1563A>G synonymous_variant 0.18
clpC1 4039145 c.1560G>C synonymous_variant 0.19
clpC1 4039162 p.His515Tyr missense_variant 0.79
clpC1 4039169 p.Glu512Asp missense_variant 0.19
clpC1 4039172 c.1533A>G synonymous_variant 0.19
clpC1 4039178 c.1527G>C synonymous_variant 0.18
clpC1 4039183 c.1522T>C synonymous_variant 0.18
clpC1 4039186 c.1519C>T synonymous_variant 0.19
clpC1 4039196 c.1509G>A synonymous_variant 0.19
clpC1 4039226 c.1479T>C synonymous_variant 0.16
clpC1 4039258 p.Gln483Glu missense_variant 0.19
clpC1 4039259 p.Glu482Asn missense_variant 0.19
clpC1 4039274 c.1431G>C synonymous_variant 0.21
clpC1 4039286 p.Leu473Met missense_variant 0.22
clpC1 4039298 c.1407T>C synonymous_variant 0.25
clpC1 4039304 c.1401G>A synonymous_variant 0.25
clpC1 4039313 c.1392C>T synonymous_variant 0.22
clpC1 4039319 c.1386T>C synonymous_variant 0.22
clpC1 4039322 c.1383T>G synonymous_variant 0.22
clpC1 4039328 c.1377A>C synonymous_variant 0.22
clpC1 4039338 p.Thr456Gln missense_variant 0.21
clpC1 4039352 c.1353C>G synonymous_variant 0.24
clpC1 4039361 c.1344C>G synonymous_variant 0.23
clpC1 4039391 c.1314T>G synonymous_variant 0.24
clpC1 4039406 c.1299G>C synonymous_variant 0.23
clpC1 4039409 c.1296T>C synonymous_variant 0.23
clpC1 4039412 c.1293T>C synonymous_variant 0.22
clpC1 4039415 p.Glu430Asp missense_variant 0.23
clpC1 4039430 c.1275T>C synonymous_variant 0.23
clpC1 4039442 c.1263A>G synonymous_variant 0.23
clpC1 4039454 c.1251A>G synonymous_variant 0.22
clpC1 4039463 c.1242C>G synonymous_variant 0.2
clpC1 4039466 c.1239T>C synonymous_variant 0.21
clpC1 4039469 c.1236T>C synonymous_variant 0.22
clpC1 4039481 c.1224T>C synonymous_variant 0.24
clpC1 4039484 c.1221T>C synonymous_variant 0.23
clpC1 4039487 c.1218G>C synonymous_variant 0.24
clpC1 4039517 c.1188C>G synonymous_variant 0.23
clpC1 4039556 c.1149G>C synonymous_variant 0.24
clpC1 4039559 c.1146C>G synonymous_variant 0.24
clpC1 4039568 p.Met379Ile missense_variant 0.24
clpC1 4039576 p.Ala377Ser missense_variant 0.24
clpC1 4039577 c.1128T>C synonymous_variant 0.23
clpC1 4039581 p.Thr375Ser missense_variant 0.23
clpC1 4039601 c.1104G>C synonymous_variant 0.23
clpC1 4039621 c.1084C>T synonymous_variant 0.22
clpC1 4039622 c.1083C>A synonymous_variant 0.22
clpC1 4039646 p.Glu353Ala missense_variant 0.2
clpC1 4039670 c.1035G>C synonymous_variant 0.18
clpC1 4039673 c.1032G>C synonymous_variant 0.18
clpC1 4039694 c.1011G>C synonymous_variant 0.18
clpC1 4039724 c.981A>G synonymous_variant 0.18
clpC1 4039751 c.954A>G synonymous_variant 0.19
clpC1 4039757 c.948A>G synonymous_variant 0.17
clpC1 4039760 c.945T>C synonymous_variant 0.17
clpC1 4039766 c.939T>C synonymous_variant 0.17
clpC1 4039790 c.915C>T synonymous_variant 0.17
clpC1 4039850 c.855T>C synonymous_variant 0.18
clpC1 4039865 c.840T>C synonymous_variant 0.19
clpC1 4039946 c.759A>T synonymous_variant 0.17
clpC1 4039952 c.753T>C synonymous_variant 0.17
clpC1 4039955 c.750G>C synonymous_variant 0.16
clpC1 4039979 c.726C>G synonymous_variant 0.18
clpC1 4039988 c.717C>G synonymous_variant 0.17
clpC1 4039996 p.Glu237Gln missense_variant 0.16
clpC1 4040517 p.Val63Ala missense_variant 0.91
embC 4240671 p.Thr270Ile missense_variant 1.0
embC 4240726 c.864G>C synonymous_variant 0.23
embC 4240765 c.903C>G synonymous_variant 0.25
embC 4240771 c.909G>C synonymous_variant 0.25
embC 4240780 c.918T>C synonymous_variant 0.25
embC 4240783 c.921G>C synonymous_variant 0.25
embC 4240789 c.927T>C synonymous_variant 0.26
embC 4240819 c.957A>G synonymous_variant 0.25
embC 4240831 c.969T>G synonymous_variant 0.26
embC 4240859 p.Leu333Val missense_variant 0.26
embC 4240867 c.1005T>C synonymous_variant 0.24
embC 4240870 c.1008T>C synonymous_variant 0.24
embC 4240879 c.1017G>C synonymous_variant 0.23
embC 4240880 p.Ala340Thr missense_variant 0.23
embC 4240885 c.1023T>C synonymous_variant 0.22
embC 4240897 c.1035C>G synonymous_variant 0.23
embC 4240900 c.1038A>G synonymous_variant 0.23
embC 4240921 c.1059C>G synonymous_variant 0.21
embC 4240924 c.1062C>G synonymous_variant 0.21
embC 4240935 p.Val358Ala missense_variant 0.19
embC 4240945 c.1083T>C synonymous_variant 0.21
embC 4240948 c.1086G>A synonymous_variant 0.2
embC 4240951 c.1089C>G synonymous_variant 0.2
embC 4240954 p.Ile364Met missense_variant 0.21
embC 4240963 c.1101G>C synonymous_variant 0.22
embC 4240966 c.1104G>C synonymous_variant 0.22
embC 4240978 c.1116G>A synonymous_variant 0.23
embC 4240983 p.Ser374Asn missense_variant 0.22
embC 4240990 c.1128A>C synonymous_variant 0.22
embC 4241017 c.1155T>C synonymous_variant 0.22
embC 4241020 c.1158G>C synonymous_variant 0.22
embC 4241023 c.1161T>G synonymous_variant 0.22
embC 4241038 c.1176G>C synonymous_variant 0.26
embC 4241042 p.Asn394Asp missense_variant 0.74
embC 4241050 c.1188T>G synonymous_variant 0.26
embC 4241053 c.1191G>C synonymous_variant 0.26
embC 4241089 c.1227C>G synonymous_variant 0.26
embC 4241095 c.1233C>T synonymous_variant 0.27
embC 4241101 c.1239G>C synonymous_variant 0.25
embC 4241104 c.1242G>A synonymous_variant 0.26
embC 4241107 c.1245G>C synonymous_variant 0.26
embC 4241140 c.1278A>C synonymous_variant 0.23
embC 4241158 c.1296T>G synonymous_variant 0.21
embC 4241161 c.1299C>G synonymous_variant 0.2
embC 4241162 c.1300T>C synonymous_variant 0.2
embC 4241179 c.1317G>A synonymous_variant 0.2
embC 4241185 c.1323G>A synonymous_variant 0.18
embC 4241203 c.1341T>C synonymous_variant 0.17
embA 4242643 c.-590C>T upstream_gene_variant 0.99
embA 4242847 c.-386C>A upstream_gene_variant 0.15
embA 4243848 p.Val206Met missense_variant 1.0
embA 4244096 c.864C>T synonymous_variant 0.99
embA 4244933 c.1701A>G synonymous_variant 0.18
embA 4244936 c.1704C>G synonymous_variant 0.18
embA 4244960 c.1728A>G synonymous_variant 0.2
embA 4244978 c.1746G>C synonymous_variant 0.2
embA 4244980 p.Val583Ala missense_variant 0.2
embA 4244982 c.1750T>C synonymous_variant 0.21
embA 4244987 c.1755T>C synonymous_variant 0.22
embA 4245003 p.Thr591Ala missense_variant 0.23
embA 4245008 c.1776T>C synonymous_variant 0.24
embA 4245014 c.1782C>G synonymous_variant 0.24
embA 4245023 c.1791A>G synonymous_variant 0.22
embA 4245026 c.1794T>C synonymous_variant 0.23
embA 4245029 c.1797T>C synonymous_variant 0.23
embA 4245032 c.1800A>C synonymous_variant 0.23
embA 4245041 c.1809C>G synonymous_variant 0.25
embA 4245053 c.1821G>C synonymous_variant 0.25
embA 4245060 c.1828T>C synonymous_variant 0.24
embA 4245083 c.1851A>G synonymous_variant 0.2
embA 4245101 c.1869G>C synonymous_variant 0.17
embA 4245137 c.1905T>C synonymous_variant 0.17
embA 4245146 c.1914G>A synonymous_variant 0.17
embA 4245153 p.Ile641Val missense_variant 0.17
embA 4245183 c.1951C>T synonymous_variant 0.16
embA 4245355 p.Ala708Gly missense_variant 0.17
embA 4245359 c.2127G>C synonymous_variant 0.17
embA 4245362 c.2130G>C synonymous_variant 0.17
embA 4245368 c.2136T>C synonymous_variant 0.17
embA 4245969 p.Pro913Ser missense_variant 0.99
embB 4247470 c.957T>C synonymous_variant 0.18
embB 4247497 c.984T>C synonymous_variant 0.17
embB 4247500 c.987C>G synonymous_variant 0.17
embB 4247512 c.999T>C synonymous_variant 0.18
embB 4247550 p.Ala346Asp missense_variant 0.15
embB 4247646 p.Glu378Ala missense_variant 1.0
embB 4248052 c.1539G>T synonymous_variant 0.16
embB 4248070 c.1557T>C synonymous_variant 0.19
embB 4248097 c.1584C>G synonymous_variant 0.19
embB 4248098 p.Ile529Phe missense_variant 0.19
embB 4248109 c.1596C>G synonymous_variant 0.22
embB 4248118 c.1605T>C synonymous_variant 0.22
embB 4248119 p.Ser536Ala missense_variant 0.23
embB 4248122 p.Leu537Val missense_variant 0.24
embB 4248133 c.1620C>A synonymous_variant 0.23
embB 4248142 c.1629T>C synonymous_variant 0.21
embB 4248143 c.1630T>C synonymous_variant 0.21
embB 4248157 c.1644A>G synonymous_variant 0.25
embB 4248172 c.1659G>C synonymous_variant 0.22
embB 4248199 c.1686A>G synonymous_variant 0.21
embB 4248206 p.Ser565Gly missense_variant 0.2
embB 4248220 c.1707A>G synonymous_variant 0.18
embB 4249369 c.2856T>C synonymous_variant 0.16
embB 4249378 c.2865G>A synonymous_variant 0.15
ubiA 4269077 p.Ile253Val missense_variant 0.16
ubiA 4269164 p.Leu224Met missense_variant 0.16
ubiA 4269173 p.Val221Ile missense_variant 0.16
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
ethA 4327483 c.-10G>A upstream_gene_variant 1.0
whiB6 4338242 p.Gln94Glu missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
whiB6 4338603 c.-82C>T upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407873 c.330G>T synonymous_variant 1.0