lineage | Count |
---|---|
198 | |
lineage4.9 | 76 |
lineage2.2.1 | 28 |
lineage3 | 8 |
lineage7;lineage2.2.1.2 | 1 |
lineage4.5 | 4 |
lineage2 | 4 |
lineage2.2 | 10 |
lineage2.2.1.1 | 2 |
lineage4 | 34 |
lineage4.1 | 3 |
lineage4.1.1 | 2 |
lineage4.1.1.3 | 3 |
lineage4.3.4.2.1 | 5 |
lineage2.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.1.2.1 | 20 |
lineage4.3 | 1 |
lineage4.8 | 5 |
lineage4.4.1.1 | 1 |
lineage4.3.2 | 2 |
lineage4.8;La3 | 1 |
La1.8.1 | 4 |
lineage4.1.2 | 1 |
lineage4.2.1 | 2 |
lineage4;lineage1.1 | 1 |
lineage4.7 | 2 |
lineage1.1.2 | 2 |
lineage1.1 | 1 |
lineage4.6.1 | 1 |
lineage4.6.2.2 | 7 |
lineage5.2 | 2 |
lineage4.3.3 | 4 |
lineage4.2.1.1 | 1 |
lineage3.1 | 4 |
La2 | 1 |
lineage4.4.2 | 1 |
La1 | 2 |
lineage6.1.1 | 2 |
lineage4.1.3 | 2 |
La1.3 | 1 |
La1.2 | 2 |
lineage1.2.2.2 | 1 |
lineage3.1.2 | 1 |
lineage4.6.1.1 | 1 |
lineage4.8;lineage4.1 | 2 |
lineage6 | 1 |
lineage6.1.3 | 1 |
lineage6.3.1 | 1 |
La3 | 1 |
lineage2.2.1.2 | 2 |
lineage1.1.1 | 1 |
spoligotype | Count |
---|---|
None | 465 |
ID | Drug resistance | Lineage | Country iso2 | SRR14782405 | HR-TB | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR15368973 | Other | None | SRR16058668 | Sensitive | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR18003019 | Other | lineage2.2.1 | None | SRR17658565 | Other | lineage3 | None | SRR17832802 | HR-TB | lineage3 | None | SRR19304036 | HR-TB | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19303884 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR24061599 | Sensitive | None | SRR21277073 | Sensitive | lineage2.2.1.1 | None | SRR22179528 | Sensitive | None | SRR24061597 | Sensitive | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR24061598 | Sensitive | None | SRR24061600 | Sensitive | None | SRR3675455 | Sensitive | lineage4 | None | ERR176751 | HR-TB | None | ERR4815604 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675477 | Other | lineage4.9 | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675229 | Other | lineage4 | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3416776 | Other | lineage2.1 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675221 | HR-TB | None | ERR4815361 | Sensitive | None | SRR3675486 | HR-TB | None | ERR163965 | Sensitive | lineage4.3.4.2.1 | mw | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3675236 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675387 | Sensitive | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR176568 | Other | lineage4.3 | None | SRR3675279 | Other | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | SRR3675318 | Other | lineage4.9 | None | SRR3675383 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675503 | Sensitive | lineage4.9 | None | SRR3675502 | Other | None | SRR3675522 | Other | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR4816019 | Sensitive | None | ERR4816999 | Other | None | SRR3675547 | Other | lineage4.9 | None | SRR3675537 | Sensitive | lineage4.9 | None | SRR3675545 | HR-TB | None | ERR2027263 | Other | lineage4 | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR3675550 | Other | None | ERR212001 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212033 | HR-TB | None | ERR4817060 | RR-TB | None | ERR212034 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | SRR3675572 | Other | None | ERR212121 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3675571 | HR-TB | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4816585 | Other | lineage2.2 | None | SRR3742665 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4817181 | Sensitive | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4815815 | Sensitive | lineage4 | None | ERR502912 | Other | lineage2.2.1 | None | SRR4034528 | Sensitive | lineage4.3.2 | za | ERR4817667 | HR-TB | lineage4.8 | None | ERR4817735 | Other | lineage4.8 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4818021 | Other | La1.8.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR234659 | HR-TB | None | ERR2446566 | Other | lineage4.1 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR4818394 | Other | lineage4.9 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4818615 | Other | None | ERR2512770 | Other | lineage4.2.1 | None | ERR4818607 | Sensitive | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341396 | Other | lineage4 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR4820335 | Other | lineage4.1.2.1 | None | SRR5341418 | Other | None | ERR4819280 | Sensitive | lineage4 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR2446382 | Other | lineage4 | None | SRR5341302 | HR-TB | None | ERR1023509 | Other | None | ERR4819927 | Sensitive | None | ERR4819932 | Other | lineage4.7 | None | ERR4821053 | Other | lineage3 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341333 | HR-TB | None | SRR5341330 | HR-TB | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR4821046 | Sensitive | None | SRR5341310 | Other | lineage1.1.2 | None | ERR2517475 | Other | lineage4 | None | SRR5341470 | HR-TB | None | SRR6045450 | Other | lineage4.9 | None | SRR6045526 | HR-TB | None | ERR2693239 | HR-TB | None | SRR5535933 | HR-TB | None | SRR5818567 | Sensitive | dj | SRR6045664 | Other | lineage4.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR5818614 | Sensitive | dj | SRR5818605 | Sensitive | None | SRR5818668 | Sensitive | dj | SRR5818661 | Sensitive | dj | SRR5818652 | Sensitive | dj | SRR5818653 | Sensitive | dj | SRR5818685 | Sensitive | None | SRR5818676 | Sensitive | dj | SRR6044876 | Sensitive | lineage4 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045952 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046015 | Other | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6045327 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046210 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6045399 | Other | None | SRR6046245 | Other | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046362 | HR-TB | None | ERR278594 | HR-TB | None | SRR6046397 | Other | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046460 | HR-TB | None | ERR3275196 | Other | lineage2.2.1 | nl | SRR6325444 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046492 | Other | None | SRR6046824 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR3077978 | Other | lineage1.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR323036 | HR-TB | None | ERR4831117 | HR-TB | None | ERR3078008 | MDR-TB | lineage4.6.1 | None | ERR4872096 | MDR-TB | lineage4.6.2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6831950 | Other | lineage4.3.3 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6832249 | Other | lineage2.2.1 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | SRR6789626 | Other | None | ERR294248 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502532 | HR-TB | None | ERR294266 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502889 | Other | None | ERR5311099 | HR-TB | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR5311081 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496471 | Sensitive | None | SRR8217918 | HR-TB | None | SRR7496517 | Other | None | SRR7496509 | Other | None | ERR067712 | HR-TB | lineage4 | None | SRR7496523 | Other | lineage4.7 | None | SRR7535086 | Other | None | ERR323038 | HR-TB | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323043 | HR-TB | None | ERR323053 | HR-TB | None | ERR323063 | HR-TB | None | DRR188519 | Other | lineage4.4.2 | None | ERR067681 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063855 | Other | lineage4 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1034652 | Other | None | ERR3283013 | MDR-TB | lineage4 | None | ERR1063857 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283010 | Other | La1 | None | ERR133986 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283043 | Other | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3439432 | Other | None | ERR3445501 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3597003 | Sensitive | None | ERR3597001 | Sensitive | None | ERR3597002 | Sensitive | None | ERR3797016 | HR-TB | None | ERR3597005 | Sensitive | None | ERR3597006 | Sensitive | None | ERR3597007 | Sensitive | None | ERR3797015 | HR-TB | None | ERR3797058 | Other | lineage4.9 | None | ERR3797043 | HR-TB | None | ERR3797069 | Other | None | ERR3797071 | Other | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797086 | Other | lineage4.9 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797083 | HR-TB | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4187734 | Other | La1.8.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR400320 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR403298 | HR-TB | lineage4 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4596902 | HR-TB | lineage3 | None | ERR4188350 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473332 | Other | lineage4 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769514 | Other | La1.3 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769450 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4769521 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797313 | HR-TB | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4798406 | HR-TB | None | ERR4798823 | HR-TB | lineage4 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR4811030 | Sensitive | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811022 | HR-TB | None | ERR4811493 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811105 | HR-TB | None | ERR6358951 | HR-TB | lineage4 | None | ERR5336148 | Other | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358837 | HR-TB | None | ERR6198317 | Other | La1.2 | None | ERR6359045 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6866807 | HR-TB | lineage4 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR702406 | HR-TB | None | ERR736839 | Other | None | ERR736835 | HR-TB | None | ERR736867 | HR-TB | None | ERR736865 | HR-TB | None | ERR7451301 | Sensitive | None | ERR736874 | HR-TB | None | ERR7451300 | Sensitive | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR752229 | Other | lineage4.5 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR7801206 | Sensitive | lineage4.3.4.2.1 | None | ERR8976043 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9119669 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119502 | MDR-TB | lineage4.6.2.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9125480 | Sensitive | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786843 | Other | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787165 | Other | lineage6 | None | ERR9787153 | Other | lineage6.1.3 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None | ERR987722 | HR-TB | None | SRR069989 | HR-TB | lineage2 | None | ERR9896144 | Other | lineage3 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1172728 | MDR-TB | None | SRR1169194 | Other | None | SRR1172310 | HR-TB | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1172234 | Other | None | SRR1173153 | HR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172817 | HR-TB | None | SRR1173118 | Other | None | SRR1172857 | MDR-TB | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1172951 | Other | None | SRR1173400 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1173384 | Other | lineage4 | None | SRR1173363 | HR-TB | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1173484 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1175049 | RR-TB | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175508 | Other | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184380 | HR-TB | None | SRR1184381 | MDR-TB | None | SRR1184372 | MDR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1184388 | Other | None | SRR1196566 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR1196546 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196768 | MDR-TB | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | SRR12142341 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR13837466 | Other | lineage4.9 | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR13837566 | Other | lineage4.9 | None | SRR13837637 | Sensitive | lineage4.9 | None | SRR13837630 | Sensitive | lineage4.9 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861399 | Other | lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861424 | RR-TB | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861484 | RR-TB | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None |
---|