Rv3596c - c.1251A>G


Drug resistance types
82 Sensitive 8 RR-TB 188 HR-TB 29 MDR-TB 8 Pre-XDR-TB 0 XDR-TB 150 Other
lineage Counts
lineage Count
198
lineage4.9 76
lineage2.2.1 28
lineage3 8
lineage7;lineage2.2.1.2 1
lineage4.5 4
lineage2 4
lineage2.2 10
lineage2.2.1.1 2
lineage4 34
lineage4.1 3
lineage4.1.1 2
lineage4.1.1.3 3
lineage4.3.4.2.1 5
lineage2.1 1
lineage3;lineage2.1 1
lineage4.1.2.1 20
lineage4.3 1
lineage4.8 5
lineage4.4.1.1 1
lineage4.3.2 2
lineage4.8;La3 1
La1.8.1 4
lineage4.1.2 1
lineage4.2.1 2
lineage4;lineage1.1 1
lineage4.7 2
lineage1.1.2 2
lineage1.1 1
lineage4.6.1 1
lineage4.6.2.2 7
lineage5.2 2
lineage4.3.3 4
lineage4.2.1.1 1
lineage3.1 4
La2 1
lineage4.4.2 1
La1 2
lineage6.1.1 2
lineage4.1.3 2
La1.3 1
La1.2 2
lineage1.2.2.2 1
lineage3.1.2 1
lineage4.6.1.1 1
lineage4.8;lineage4.1 2
lineage6 1
lineage6.1.3 1
lineage6.3.1 1
La3 1
lineage2.2.1.2 2
lineage1.1.1 1
spoligotype Counts
spoligotype Count
None 465
Geographic prevalence
Country level data for this variant is available for 11 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR14782405 HR-TB None
SRR16156804 RR-TB lineage4.9 None
SRR15368973 Other None
SRR16058668 Sensitive None
SRR16156188 HR-TB lineage4.9 None
SRR1640750 HR-TB None
SRR18003019 Other lineage2.2.1 None
SRR17658565 Other lineage3 None
SRR17832802 HR-TB lineage3 None
SRR19304036 HR-TB None
SRR18549032 HR-TB lineage7;lineage2.2.1.2 None
SRR19303884 HR-TB None
SRR18213713 HR-TB lineage4.5 None
SRR20969731 Other lineage2.2.1 None
SRR20969677 HR-TB lineage2 None
SRR20969708 HR-TB lineage2.2 None
SRR20970016 Other lineage2.2 None
SRR24061599 Sensitive None
SRR21277073 Sensitive lineage2.2.1.1 None
SRR22179528 Sensitive None
SRR24061597 Sensitive None
SRR21677886 Sensitive lineage4.9 None
SRR24061598 Sensitive None
SRR24061600 Sensitive None
SRR3675455 Sensitive lineage4 None
ERR176751 HR-TB None
ERR4815604 HR-TB None
SRR3675464 HR-TB lineage4.1 None
ERR176793 Other lineage4.1.1 None
SRR3675477 Other lineage4.9 None
SRR3675465 HR-TB None
ERR158583 HR-TB None
SRR3675482 HR-TB None
ERR161033 HR-TB None
ERR4814352 HR-TB lineage2.2.1 None
SRR3675229 Other lineage4 None
ERR4814396 Sensitive lineage4.1.1.3 None
ERR161034 Other lineage4.3.4.2.1 None
SRR3416776 Other lineage2.1 None
ERR4814536 MDR-TB lineage3;lineage2.1 None
SRR3675221 HR-TB None
ERR4815361 Sensitive None
SRR3675486 HR-TB None
ERR163965 Sensitive lineage4.3.4.2.1 mw
SRR3675210 Sensitive lineage4.9 None
SRR3675247 Other lineage4.9 None
SRR3675249 Sensitive lineage4.9 None
SRR3675236 HR-TB None
SRR3675232 Other lineage4.1.2.1 None
SRR3675387 Sensitive None
ERR176518 Sensitive lineage4.3.4.2.1 None
ERR176549 Other lineage4.3.4.2.1 None
ERR176568 Other lineage4.3 None
SRR3675279 Other None
ERR176643 HR-TB None
SRR3675311 Other None
SRR3675318 Other lineage4.9 None
SRR3675383 HR-TB None
ERR176740 HR-TB None
SRR3675514 Sensitive lineage4.9 None
SRR3675503 Sensitive lineage4.9 None
SRR3675502 Other None
SRR3675522 Other None
SRR3675548 Sensitive lineage4.9 None
ERR4816019 Sensitive None
ERR4816999 Other None
SRR3675547 Other lineage4.9 None
SRR3675537 Sensitive lineage4.9 None
SRR3675545 HR-TB None
ERR2027263 Other lineage4 None
SRR3675553 Sensitive lineage4.9 None
SRR3675550 Other None
ERR212001 HR-TB None
SRR3675558 HR-TB None
ERR212033 HR-TB None
ERR4817060 RR-TB None
ERR212034 HR-TB None
ERR212138 HR-TB lineage4 None
SRR3675572 Other None
ERR212121 HR-TB None
SRR3675574 HR-TB None
ERR4816551 HR-TB lineage4.1.1.3 None
SRR3675571 HR-TB None
ERR2229198 MDR-TB lineage4.8 None
ERR4816585 Other lineage2.2 None
SRR3742665 HR-TB None
ERR4816559 MDR-TB lineage4.4.1.1 None
ERR4817181 Sensitive None
ERR4818646 Sensitive lineage4.1.2.1 None
ERR4815815 Sensitive lineage4 None
ERR502912 Other lineage2.2.1 None
SRR4034528 Sensitive lineage4.3.2 za
ERR4817667 HR-TB lineage4.8 None
ERR4817735 Other lineage4.8 None
ERR4817893 Other lineage4.8;La3 None
ERR4818710 Sensitive lineage4.9 None
ERR4818021 Other La1.8.1 None
ERR4817896 HR-TB lineage2.2.1 None
ERR234659 HR-TB None
ERR2446566 Other lineage4.1 None
ERR2509673 Other lineage2.2.1 None
ERR4818394 Other lineage4.9 None
ERR2513229 MDR-TB lineage2.2.1 None
ERR4818347 Other lineage4.1.2 None
ERR4818615 Other None
ERR2512770 Other lineage4.2.1 None
ERR4818607 Sensitive lineage4.9 None
ERR2514327 HR-TB lineage4.8 None
SRR5341396 Other lineage4 None
ERR4819322 Other lineage4;lineage1.1 None
ERR4820335 Other lineage4.1.2.1 None
SRR5341418 Other None
ERR4819280 Sensitive lineage4 None
ERR4820854 Other lineage4.1.2.1 None
SRR5341296 Sensitive lineage4.9 None
SRR5341437 Sensitive lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR2446382 Other lineage4 None
SRR5341302 HR-TB None
ERR1023509 Other None
ERR4819927 Sensitive None
ERR4819932 Other lineage4.7 None
ERR4821053 Other lineage3 None
SRR5341323 Sensitive lineage4 None
SRR5341333 HR-TB None
SRR5341330 HR-TB None
SRR5341345 Sensitive lineage4.9 None
ERR4821046 Sensitive None
SRR5341310 Other lineage1.1.2 None
ERR2517475 Other lineage4 None
SRR5341470 HR-TB None
SRR6045450 Other lineage4.9 None
SRR6045526 HR-TB None
ERR2693239 HR-TB None
SRR5535933 HR-TB None
SRR5818567 Sensitive dj
SRR6045664 Other lineage4.2.1 None
SRR6046141 Other lineage4.9 None
SRR5818614 Sensitive dj
SRR5818605 Sensitive None
SRR5818668 Sensitive dj
SRR5818661 Sensitive dj
SRR5818652 Sensitive dj
SRR5818653 Sensitive dj
SRR5818685 Sensitive None
SRR5818676 Sensitive dj
SRR6044876 Sensitive lineage4 None
SRR6045832 HR-TB lineage4.9 None
SRR6044819 Sensitive lineage4.9 None
SRR6044790 HR-TB None
SRR6044838 Other lineage4.9 None
SRR6044835 Sensitive lineage4 None
SRR6045952 HR-TB None
SRR6046253 HR-TB lineage4.9 None
SRR6046015 Other lineage4.9 None
SRR6045217 Other lineage4 None
SRR6045327 HR-TB None
SRR6046066 HR-TB None
SRR6046225 HR-TB None
SRR6045191 Sensitive lineage4.9 None
SRR6046210 Other lineage4 None
SRR6045233 HR-TB None
SRR6045359 Sensitive lineage4.9 None
SRR6045399 Other None
SRR6046245 Other lineage4.9 None
SRR6325442 HR-TB None
SRR6046385 Other lineage4.9 None
SRR6046305 Other lineage4.9 None
SRR6046362 HR-TB None
ERR278594 HR-TB None
SRR6046397 Other None
ERR2446563 Other lineage2.2.1 nl
ERR2851356 Sensitive lineage4.9 None
SRR6046460 HR-TB None
ERR3275196 Other lineage2.2.1 nl
SRR6325444 HR-TB None
SRR6046514 HR-TB None
SRR6046482 HR-TB None
SRR6046492 Other None
SRR6046824 HR-TB None
SRR6046540 HR-TB None
SRR6325448 HR-TB None
SRR6046644 HR-TB None
SRR6325447 HR-TB None
SRR6079962 HR-TB lineage2.2.1.1 None
SRR6458421 MDR-TB lineage2.2.1 None
ERR3077978 Other lineage1.1 None
SRR6397654 HR-TB lineage4.1.2.1 None
SRR6458423 HR-TB lineage2.2.1 None
ERR323036 HR-TB None
ERR4831117 HR-TB None
ERR3078008 MDR-TB lineage4.6.1 None
ERR4872096 MDR-TB lineage4.6.2.2 None
ERR4831546 HR-TB lineage2.2 None
ERR4872094 MDR-TB lineage5.2 None
ERR4831545 Pre-XDR-TB lineage2.2 None
SRR6831950 Other lineage4.3.3 None
ERR4872119 MDR-TB lineage4.6.2.2 None
SRR6832249 Other lineage2.2.1 None
SRR6832178 HR-TB lineage4.2.1.1 None
SRR6832787 RR-TB lineage2.2.1 None
SRR6789626 Other None
ERR294248 HR-TB None
ERR5311090 HR-TB None
ERR323034 HR-TB lineage3.1 None
ERR502532 HR-TB None
ERR294266 HR-TB None
ERR502524 HR-TB La2 None
ERR502889 Other None
ERR5311099 HR-TB None
ERR502908 HR-TB lineage2.2.1 None
ERR5311081 HR-TB None
SRR7131023 Other lineage4.1.2.1 None
SRR7496471 Sensitive None
SRR8217918 HR-TB None
SRR7496517 Other None
SRR7496509 Other None
ERR067712 HR-TB lineage4 None
SRR7496523 Other lineage4.7 None
SRR7535086 Other None
ERR323038 HR-TB None
ERR323039 HR-TB None
ERR323041 HR-TB None
ERR323055 HR-TB None
ERR323054 HR-TB lineage3.1 None
ERR323043 HR-TB None
ERR323053 HR-TB None
ERR323063 HR-TB None
DRR188519 Other lineage4.4.2 None
ERR067681 HR-TB None
ERR1023295 HR-TB lineage4.1.2.1 None
ERR1063855 Other lineage4 None
ERR1023525 HR-TB lineage4 None
ERR1034634 HR-TB None
ERR1035157 Other lineage4.9 None
ERR1063839 HR-TB lineage2.2 None
ERR1034652 Other None
ERR3283013 MDR-TB lineage4 None
ERR1063857 HR-TB None
ERR108125 Pre-XDR-TB lineage4.9 None
ERR3283010 Other La1 None
ERR133986 HR-TB None
ERR3283025 HR-TB None
ERR3283017 HR-TB None
ERR3283032 HR-TB None
ERR3283033 Sensitive lineage4.9 None
ERR3283027 HR-TB None
ERR3283030 HR-TB lineage4.9 None
ERR3283040 HR-TB None
ERR3283048 HR-TB lineage4.9 None
ERR3283043 Other lineage4.9 None
ERR3283036 HR-TB None
ERR3445502 HR-TB lineage4 None
ERR3439432 Other None
ERR3445501 HR-TB None
ERR3468544 HR-TB None
ERR3797023 HR-TB La1.8.1 None
ERR3597003 Sensitive None
ERR3597001 Sensitive None
ERR3597002 Sensitive None
ERR3797016 HR-TB None
ERR3597005 Sensitive None
ERR3597006 Sensitive None
ERR3597007 Sensitive None
ERR3797015 HR-TB None
ERR3797058 Other lineage4.9 None
ERR3797043 HR-TB None
ERR3797069 Other None
ERR3797071 Other lineage4.9 None
ERR3801503 Sensitive lineage4.6.2.2 None
ERR3797080 HR-TB lineage4.9 None
ERR3797086 Other lineage4.9 None
ERR3797073 HR-TB La1.8.1 None
ERR3797083 HR-TB None
ERR3799304 Other lineage6.1.1 None
ERR4187734 Other La1.8.1 None
ERR3804169 HR-TB lineage4.1.3 None
ERR400320 Sensitive lineage4 None
ERR400326 Sensitive lineage4 None
ERR403298 HR-TB lineage4 None
ERR3804155 Other lineage4.1.2.1 None
ERR4596902 HR-TB lineage3 None
ERR4188350 HR-TB None
ERR4407463 HR-TB None
ERR4769457 Other lineage4.9 None
ERR473323 HR-TB lineage4.9 None
ERR473332 Other lineage4 None
ERR4769442 HR-TB lineage4 None
ERR4769452 HR-TB None
ERR4769514 Other La1.3 None
ERR4769497 HR-TB La1.2 None
ERR4769450 HR-TB None
ERR4798262 HR-TB La1 None
ERR4769521 HR-TB None
ERR4797054 Pre-XDR-TB lineage2 None
ERR4797313 HR-TB None
ERR4797350 Sensitive lineage4.9 None
ERR4797588 MDR-TB lineage3 None
ERR4797201 Other lineage1.2.2.2 None
ERR4798406 HR-TB None
ERR4798823 HR-TB lineage4 None
ERR4798648 HR-TB lineage3.1.2 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR4810624 HR-TB lineage2.2 None
ERR4799025 Pre-XDR-TB None
ERR4800341 Other lineage3 None
ERR4799513 HR-TB lineage2.2 None
ERR4800527 MDR-TB lineage2.2.1 None
ERR4810741 HR-TB None
ERR4811030 Sensitive None
ERR4811031 Sensitive lineage4.5 None
ERR4811022 HR-TB None
ERR4811493 HR-TB None
ERR4811142 MDR-TB None
ERR4811105 HR-TB None
ERR6358951 HR-TB lineage4 None
ERR5336148 Other None
ERR6358755 Other lineage4.6.1.1 None
ERR6358837 HR-TB None
ERR6198317 Other La1.2 None
ERR6359045 HR-TB None
ERR6358991 HR-TB None
ERR6866807 HR-TB lineage4 None
ERR6359066 HR-TB lineage4 None
ERR6866125 Sensitive lineage4.1.2.1 None
ERR6359074 HR-TB lineage4.9 None
ERR702406 HR-TB None
ERR736839 Other None
ERR736835 HR-TB None
ERR736867 HR-TB None
ERR736865 HR-TB None
ERR7451301 Sensitive None
ERR736874 HR-TB None
ERR7451300 Sensitive None
ERR772255 MDR-TB lineage4.3.2 None
ERR752229 Other lineage4.5 None
ERR7821163 Other lineage2.2.1 None
ERR7801206 Sensitive lineage4.3.4.2.1 None
ERR8976043 HR-TB None
ERR7911670 Pre-XDR-TB lineage2.2 None
ERR9119669 HR-TB None
ERR9117709 HR-TB None
ERR9117721 HR-TB lineage1.1.2 None
ERR9119502 MDR-TB lineage4.6.2.2 None
ERR9119500 MDR-TB lineage5.2 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR9786440 Other lineage4.1 None
ERR9786076 Sensitive lineage3 None
ERR9786421 Other lineage4.1.2.1 None
ERR9125480 Sensitive None
ERR9786526 Other lineage4.8;lineage4.1 None
ERR9786525 Other lineage4.8;lineage4.1 None
ERR9786569 Other lineage4.8 None
ERR9786601 Other lineage4.1.2.1 None
ERR9786604 Other None
ERR9786611 HR-TB lineage4.1.3 None
ERR9786617 Other lineage4.1.1 None
ERR9786627 Other lineage4.1.2.1 None
ERR9786642 Other lineage4.1.2.1 None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR9786682 Other lineage4.1.2.1 None
ERR9786694 Other lineage4.1.2.1 None
ERR9786645 Other lineage4.6.2.2 None
ERR9786671 Other None
ERR9786656 Sensitive lineage4.1.2.1 None
ERR9786711 Sensitive lineage4.6.2.2 None
ERR9786843 Other None
ERR9787014 Other lineage6.1.1 None
ERR9787165 Other lineage6 None
ERR9787153 Other lineage6.1.3 None
SRR1049674 HR-TB lineage2.2.1 None
ERR9787139 Other lineage6.3.1 None
ERR9787197 Other None
ERR987722 HR-TB None
SRR069989 HR-TB lineage2 None
ERR9896144 Other lineage3 None
SRR1049675 HR-TB lineage2.2.1 None
SRR1165584 Other lineage4.1.2.1 None
SRR1062919 HR-TB lineage2.2.1 None
SRR1140724 HR-TB lineage2.2.1 None
SRR1166821 HR-TB lineage4.1.2.1 None
SRR1167384 Other lineage4 None
SRR1167055 Other lineage4.1.2.1 None
SRR1172728 MDR-TB None
SRR1169194 Other None
SRR1172310 HR-TB None
SRR1169249 Other La3 None
SRR1169306 Other None
SRR1172234 Other None
SRR1173153 HR-TB None
SRR1172796 Sensitive lineage2.2.1.2 None
SRR1172817 HR-TB None
SRR1173118 Other None
SRR1172857 MDR-TB None
SRR1172885 HR-TB lineage4.9 None
SRR1172951 Other None
SRR1173400 Other None
SRR1173218 Pre-XDR-TB lineage4.3.3 None
SRR1173385 Sensitive lineage4.9 None
SRR1173384 Other lineage4 None
SRR1173363 HR-TB None
SRR1175127 Sensitive lineage2.2.1.2 None
SRR1173515 HR-TB lineage4.9 None
SRR1173633 HR-TB lineage4.9 None
SRR1174897 HR-TB None
SRR1175052 HR-TB lineage4.9 None
SRR1175074 MDR-TB None
SRR1173484 Other lineage4 None
SRR1173562 HR-TB lineage4 None
SRR1173629 Other None
SRR1173706 Other lineage4.9 None
SRR1173778 Other None
SRR1173788 Other None
SRR1175049 RR-TB None
SRR1175500 MDR-TB lineage4 None
SRR1175496 HR-TB lineage4.9 None
SRR1175508 Other lineage4.9 None
SRR1175507 MDR-TB lineage4 None
SRR1180137 Other lineage2.2.1 None
SRR1184346 HR-TB lineage3.1 None
SRR1180270 Other lineage2.2.1 None
SRR1181020 Other lineage2.2.1 None
SRR1183049 Other lineage2.2 None
SRR1184308 Sensitive lineage4.9 None
SRR1184312 HR-TB lineage2.2.1 None
SRR1184294 HR-TB None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR1184380 HR-TB None
SRR1184381 MDR-TB None
SRR1184372 MDR-TB None
SRR1196474 HR-TB lineage3.1 None
SRR1184388 Other None
SRR1196566 HR-TB None
SRR1196494 MDR-TB None
SRR1196545 HR-TB lineage4.9 None
SRR1196546 HR-TB None
SRR1196677 HR-TB lineage2 None
SRR1196571 Pre-XDR-TB lineage4.3.3 None
SRR1196768 MDR-TB None
SRR12142339 HR-TB lineage2.2.1 None
SRR12416824 HR-TB None
SRR12142341 HR-TB None
SRR12416840 MDR-TB lineage4.9 None
SRR13423649 Sensitive lineage2.2.1 None
SRR13423544 Other lineage4.5 None
SRR13837466 Other lineage4.9 None
SRR13591342 HR-TB lineage4.1.1.3 None
SRR13837566 Other lineage4.9 None
SRR13837637 Sensitive lineage4.9 None
SRR13837630 Sensitive lineage4.9 None
SRR13861261 Sensitive lineage4.9 None
SRR13861153 Other lineage4.9 None
SRR13861413 Sensitive lineage4.9 None
SRR13861372 Other lineage4.9 None
SRR13861399 Other lineage4.9 None
SRR13861305 Other lineage4.9 None
SRR13861304 Other lineage4.9 None
SRR13861332 Other lineage4.9 None
SRR13861381 MDR-TB lineage4.9 None
SRR13861424 RR-TB lineage4.9 None
SRR13861434 RR-TB lineage4.9 None
SRR13861484 RR-TB lineage4.9 None
SRR13861510 Other lineage4.9 None
SRR13861629 RR-TB lineage4.9 None
SRR14066533 Sensitive lineage1.1.1 None