Run ID: SRR13861305
Sample name:
Date: 03-04-2023 09:28:31
Number of reads: 1033699
Percentage reads mapped: 34.49
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472307 | n.462C>T | non_coding_transcript_exon_variant | 0.27 | streptomycin |
embB | 4247448 | p.His312Arg | missense_variant | 0.12 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6307 | c.-995T>G | upstream_gene_variant | 0.14 |
gyrA | 6319 | c.-983G>C | upstream_gene_variant | 0.14 |
gyrA | 6325 | c.-977C>G | upstream_gene_variant | 0.19 |
gyrA | 6361 | c.-941G>A | upstream_gene_variant | 0.15 |
gyrA | 6362 | c.-940T>C | upstream_gene_variant | 0.15 |
gyrA | 6379 | c.-923C>G | upstream_gene_variant | 0.17 |
gyrA | 6382 | c.-920A>G | upstream_gene_variant | 0.15 |
gyrA | 6388 | c.-914T>C | upstream_gene_variant | 0.15 |
gyrB | 6455 | p.Val406Ile | missense_variant | 0.12 |
gyrA | 6700 | c.-602T>C | upstream_gene_variant | 0.15 |
gyrA | 6703 | c.-599G>C | upstream_gene_variant | 0.16 |
gyrA | 6706 | c.-596G>A | upstream_gene_variant | 0.16 |
gyrA | 6709 | c.-593A>G | upstream_gene_variant | 0.15 |
gyrA | 6727 | c.-575G>T | upstream_gene_variant | 0.16 |
gyrA | 6728 | c.-574_-572delCTAinsTTG | upstream_gene_variant | 0.16 |
gyrA | 6745 | c.-557T>G | upstream_gene_variant | 0.18 |
gyrA | 6760 | c.-542G>C | upstream_gene_variant | 0.18 |
gyrA | 6778 | c.-524C>T | upstream_gene_variant | 0.17 |
gyrA | 6793 | c.-509T>C | upstream_gene_variant | 0.17 |
gyrB | 6797 | p.Gly520Thr | missense_variant | 0.17 |
gyrA | 7466 | c.165G>A | synonymous_variant | 0.14 |
gyrA | 7469 | c.168C>T | synonymous_variant | 0.14 |
gyrA | 7480 | p.Phe60Tyr | missense_variant | 0.14 |
gyrA | 7490 | c.189C>T | synonymous_variant | 0.14 |
gyrA | 7541 | c.240C>G | synonymous_variant | 0.15 |
gyrA | 7626 | c.325C>T | synonymous_variant | 0.15 |
gyrA | 7637 | c.336C>G | synonymous_variant | 0.15 |
gyrA | 7649 | c.348C>T | synonymous_variant | 0.19 |
gyrA | 7652 | c.351C>T | synonymous_variant | 0.19 |
gyrA | 7658 | c.357A>G | synonymous_variant | 0.22 |
gyrA | 7664 | c.363T>C | synonymous_variant | 0.21 |
gyrA | 7670 | c.369A>G | synonymous_variant | 0.18 |
gyrA | 7676 | c.375G>C | synonymous_variant | 0.18 |
gyrA | 7683 | c.382A>C | synonymous_variant | 0.18 |
gyrA | 7694 | c.393A>G | synonymous_variant | 0.17 |
gyrA | 7697 | c.396C>G | synonymous_variant | 0.19 |
gyrA | 7710 | c.409T>C | synonymous_variant | 0.28 |
gyrA | 7715 | c.414G>C | synonymous_variant | 0.31 |
gyrA | 7728 | c.427_429delAGGinsCGC | synonymous_variant | 0.3 |
gyrA | 7760 | c.459C>T | synonymous_variant | 0.27 |
gyrA | 7763 | c.462T>C | synonymous_variant | 0.26 |
gyrA | 7799 | c.498A>G | synonymous_variant | 0.24 |
gyrA | 7835 | c.534A>G | synonymous_variant | 0.22 |
gyrA | 7838 | c.537C>G | synonymous_variant | 0.22 |
gyrA | 7859 | c.558A>C | synonymous_variant | 0.15 |
gyrA | 7862 | c.561C>G | synonymous_variant | 0.17 |
gyrA | 7865 | c.564T>C | synonymous_variant | 0.14 |
gyrA | 7919 | p.Glu206Asp | missense_variant | 0.14 |
gyrA | 8786 | c.1485T>C | synonymous_variant | 0.15 |
gyrA | 9566 | c.2265C>T | synonymous_variant | 0.13 |
gyrA | 9605 | c.2304C>G | synonymous_variant | 0.21 |
gyrA | 9611 | p.Asp770Glu | missense_variant | 0.21 |
gyrA | 9626 | c.2325T>C | synonymous_variant | 0.23 |
gyrA | 9629 | c.2328C>G | synonymous_variant | 0.23 |
gyrA | 9630 | p.Val777Ile | missense_variant | 0.23 |
gyrA | 9635 | c.2334T>C | synonymous_variant | 0.23 |
gyrA | 9644 | c.2343T>C | synonymous_variant | 0.22 |
gyrA | 9647 | c.2346C>T | synonymous_variant | 0.21 |
gyrA | 9650 | c.2349G>C | synonymous_variant | 0.21 |
gyrA | 9665 | c.2364A>G | synonymous_variant | 0.21 |
gyrA | 9666 | p.Arg789Gly | missense_variant | 0.21 |
gyrA | 9674 | c.2373T>C | synonymous_variant | 0.2 |
gyrA | 9677 | c.2376C>T | synonymous_variant | 0.2 |
gyrA | 9701 | c.2400T>C | synonymous_variant | 0.16 |
fgd1 | 491181 | c.399T>C | synonymous_variant | 0.16 |
fgd1 | 491191 | p.Gly137Arg | missense_variant | 0.16 |
fgd1 | 491194 | c.412_414delCTAinsTTG | synonymous_variant | 0.16 |
fgd1 | 491232 | c.450T>C | synonymous_variant | 0.2 |
fgd1 | 491241 | p.Asp153Glu | missense_variant | 0.18 |
fgd1 | 491244 | c.462T>C | synonymous_variant | 0.16 |
fgd1 | 491259 | c.477T>C | synonymous_variant | 0.15 |
fgd1 | 491296 | p.Val172Ile | missense_variant | 0.14 |
fgd1 | 491301 | c.519C>T | synonymous_variant | 0.13 |
rpoB | 760121 | c.315T>C | synonymous_variant | 0.14 |
rpoB | 760139 | c.333A>G | synonymous_variant | 0.14 |
rpoB | 760142 | c.336C>G | synonymous_variant | 0.14 |
rpoB | 760181 | c.375T>C | synonymous_variant | 0.14 |
rpoB | 760184 | c.378A>G | synonymous_variant | 0.15 |
rpoB | 760196 | c.390C>G | synonymous_variant | 0.16 |
rpoB | 760340 | c.534G>C | synonymous_variant | 0.16 |
rpoB | 760361 | c.555T>C | synonymous_variant | 0.18 |
rpoB | 760728 | p.Tyr308Asn | missense_variant | 0.92 |
rpoB | 760985 | c.1179G>C | synonymous_variant | 0.16 |
rpoB | 760991 | c.1185G>C | synonymous_variant | 0.16 |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.16 |
rpoB | 761021 | c.1215G>C | synonymous_variant | 0.16 |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.15 |
rpoB | 761094 | c.1288C>T | synonymous_variant | 0.14 |
rpoB | 761097 | c.1291_1292delAGinsTC | synonymous_variant | 0.14 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.17 |
rpoB | 761133 | c.1327T>C | synonymous_variant | 0.15 |
rpoB | 761150 | c.1344A>C | synonymous_variant | 0.15 |
rpoB | 761222 | c.1416G>C | synonymous_variant | 0.18 |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.15 |
rpoB | 761261 | c.1455G>T | synonymous_variant | 0.15 |
rpoB | 761570 | c.1764T>C | synonymous_variant | 0.14 |
rpoB | 761579 | c.1773G>C | synonymous_variant | 0.16 |
rpoB | 761606 | c.1800C>G | synonymous_variant | 0.18 |
rpoB | 761612 | c.1806G>C | synonymous_variant | 0.15 |
rpoB | 761615 | c.1809A>C | synonymous_variant | 0.14 |
rpoB | 761648 | c.1842T>C | synonymous_variant | 0.16 |
rpoB | 761657 | c.1851C>G | synonymous_variant | 0.16 |
rpoB | 761675 | c.1869G>C | synonymous_variant | 0.15 |
rpoB | 761687 | c.1881C>T | synonymous_variant | 0.15 |
rpoB | 761690 | c.1884G>C | synonymous_variant | 0.16 |
rpoB | 761732 | c.1926C>G | synonymous_variant | 0.19 |
rpoB | 761735 | c.1929C>G | synonymous_variant | 0.17 |
rpoB | 761747 | c.1941G>C | synonymous_variant | 0.19 |
rpoB | 761750 | c.1944G>C | synonymous_variant | 0.19 |
rpoB | 761765 | c.1959T>C | synonymous_variant | 0.2 |
rpoB | 761772 | p.His656Ala | missense_variant | 0.23 |
rpoB | 761778 | p.Asn658Asp | missense_variant | 0.21 |
rpoB | 761791 | p.Arg662His | missense_variant | 0.15 |
rpoB | 761813 | c.2007T>C | synonymous_variant | 0.14 |
rpoB | 761815 | p.Ala670Glu | missense_variant | 0.14 |
rpoB | 761834 | c.2028T>C | synonymous_variant | 0.16 |
rpoB | 761847 | p.Cys681Ser | missense_variant | 0.17 |
rpoB | 761852 | c.2046C>G | synonymous_variant | 0.2 |
rpoB | 761858 | c.2052G>C | synonymous_variant | 0.23 |
rpoB | 761864 | c.2058G>C | synonymous_variant | 0.26 |
rpoB | 761873 | c.2067A>G | synonymous_variant | 0.22 |
rpoB | 761885 | c.2079T>C | synonymous_variant | 0.22 |
rpoB | 761891 | c.2085G>C | synonymous_variant | 0.19 |
rpoB | 761906 | c.2100C>G | synonymous_variant | 0.19 |
rpoB | 761909 | c.2103T>C | synonymous_variant | 0.19 |
rpoB | 761912 | c.2106T>C | synonymous_variant | 0.19 |
rpoB | 761915 | p.Asp703Glu | missense_variant | 0.19 |
rpoB | 761916 | p.Asp704Asn | missense_variant | 0.19 |
rpoB | 761948 | c.2142G>C | synonymous_variant | 0.18 |
rpoB | 761954 | c.2148C>G | synonymous_variant | 0.19 |
rpoB | 761999 | c.2193G>C | synonymous_variant | 0.16 |
rpoB | 762254 | c.2448T>C | synonymous_variant | 0.14 |
rpoB | 762266 | c.2460T>C | synonymous_variant | 0.15 |
rpoB | 762284 | c.2478G>C | synonymous_variant | 0.17 |
rpoB | 762293 | c.2487T>C | synonymous_variant | 0.16 |
rpoB | 762317 | c.2511A>G | synonymous_variant | 0.17 |
rpoB | 762329 | c.2523G>C | synonymous_variant | 0.15 |
rpoB | 762338 | c.2532T>C | synonymous_variant | 0.15 |
rpoB | 762347 | c.2541T>C | synonymous_variant | 0.15 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.14 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.14 |
rpoC | 763456 | c.87A>G | synonymous_variant | 0.17 |
rpoC | 763468 | c.99G>C | synonymous_variant | 0.19 |
rpoC | 763486 | c.117T>C | synonymous_variant | 0.18 |
rpoC | 763528 | c.159G>A | synonymous_variant | 0.24 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.24 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.26 |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.31 |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.29 |
rpoC | 763636 | c.267T>C | synonymous_variant | 0.27 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.26 |
rpoC | 763658 | c.289_291delCTTinsTTG | synonymous_variant | 0.19 |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.21 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.2 |
rpoC | 763702 | c.333C>G | synonymous_variant | 0.2 |
rpoC | 763708 | c.339G>A | synonymous_variant | 0.19 |
rpoC | 763709 | c.340C>T | synonymous_variant | 0.19 |
rpoC | 763714 | c.345G>C | synonymous_variant | 0.18 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.18 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.2 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.19 |
rpoC | 763735 | c.366G>C | synonymous_variant | 0.19 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.16 |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.14 |
rpoC | 763768 | c.399C>G | synonymous_variant | 0.14 |
rpoC | 763928 | p.Glu187* | stop_gained | 0.9 |
rpoC | 764131 | c.762T>C | synonymous_variant | 0.19 |
rpoC | 764161 | c.792G>C | synonymous_variant | 0.16 |
rpoC | 764188 | c.819A>G | synonymous_variant | 0.17 |
rpoC | 764195 | p.Ser276Gln | missense_variant | 0.14 |
rpoC | 764203 | c.834G>T | synonymous_variant | 0.15 |
rpoC | 764206 | c.837T>C | synonymous_variant | 0.14 |
rpoC | 764626 | c.1257C>T | synonymous_variant | 0.21 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.2 |
rpoC | 764644 | c.1275G>C | synonymous_variant | 0.17 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.17 |
rpoC | 764714 | c.1345C>T | synonymous_variant | 0.21 |
rpoC | 764720 | c.1351C>T | synonymous_variant | 0.19 |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.16 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.19 |
rpoC | 764791 | c.1422C>G | synonymous_variant | 0.18 |
rpoC | 764809 | c.1440C>T | synonymous_variant | 0.18 |
rpoC | 764812 | c.1443C>G | synonymous_variant | 0.18 |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.18 |
rpoC | 764824 | c.1455T>C | synonymous_variant | 0.19 |
rpoC | 764830 | c.1461C>G | synonymous_variant | 0.19 |
rpoC | 764858 | c.1489T>C | synonymous_variant | 0.17 |
rpoC | 764872 | c.1503A>G | synonymous_variant | 0.16 |
rpoC | 764893 | c.1524T>C | synonymous_variant | 0.2 |
rpoC | 764911 | c.1542A>G | synonymous_variant | 0.23 |
rpoC | 764923 | c.1554A>G | synonymous_variant | 0.19 |
rpoC | 764932 | c.1563C>A | synonymous_variant | 0.2 |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.2 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 0.22 |
rpoC | 765007 | c.1638T>G | synonymous_variant | 0.21 |
rpoC | 765019 | c.1650A>G | synonymous_variant | 0.17 |
rpoC | 765022 | c.1653G>C | synonymous_variant | 0.17 |
rpoC | 765404 | p.Leu679Val | missense_variant | 0.16 |
rpoC | 765478 | c.2109T>C | synonymous_variant | 0.19 |
rpoC | 765499 | c.2130C>G | synonymous_variant | 0.15 |
rpoC | 765541 | c.2172C>G | synonymous_variant | 0.16 |
rpoC | 765578 | c.2209C>T | synonymous_variant | 0.16 |
rpoC | 765583 | c.2214G>T | synonymous_variant | 0.16 |
rpoC | 765613 | p.His748Gln | missense_variant | 0.17 |
rpoC | 765625 | c.2256C>G | synonymous_variant | 0.15 |
rpoC | 765628 | c.2259G>C | synonymous_variant | 0.15 |
rpoC | 765631 | p.Asp754Glu | missense_variant | 0.15 |
rpoC | 765658 | c.2289C>T | synonymous_variant | 0.22 |
rpoC | 765700 | c.2331T>C | synonymous_variant | 0.26 |
rpoC | 765734 | c.2365T>C | synonymous_variant | 0.26 |
rpoC | 765739 | c.2370G>C | synonymous_variant | 0.25 |
rpoC | 765751 | c.2382C>G | synonymous_variant | 0.26 |
rpoC | 765753 | p.Asp795Ala | missense_variant | 0.26 |
rpoC | 765772 | c.2403C>G | synonymous_variant | 0.29 |
rpoC | 765784 | c.2415C>G | synonymous_variant | 0.28 |
rpoC | 765796 | c.2427C>T | synonymous_variant | 0.24 |
rpoC | 765811 | c.2442T>C | synonymous_variant | 0.19 |
rpoC | 765814 | c.2445A>G | synonymous_variant | 0.23 |
rpoC | 765826 | c.2457T>C | synonymous_variant | 0.26 |
rpoC | 765835 | c.2466C>T | synonymous_variant | 0.24 |
rpoC | 765883 | c.2514C>G | synonymous_variant | 0.21 |
rpoC | 765886 | c.2517C>G | synonymous_variant | 0.22 |
rpoC | 765892 | c.2523T>C | synonymous_variant | 0.24 |
rpoC | 765928 | c.2559C>G | synonymous_variant | 0.21 |
rpoC | 765967 | c.2598C>T | synonymous_variant | 0.19 |
rpoC | 765970 | c.2601C>T | synonymous_variant | 0.17 |
rpoC | 765979 | c.2610C>G | synonymous_variant | 0.18 |
rpoC | 765982 | c.2613C>T | synonymous_variant | 0.18 |
rpoC | 765985 | c.2616C>T | synonymous_variant | 0.17 |
rpoC | 765994 | c.2625A>T | synonymous_variant | 0.18 |
rpoC | 766009 | c.2640G>C | synonymous_variant | 0.16 |
rpoC | 766010 | c.2641_2642delTCinsAG | synonymous_variant | 0.16 |
rpoC | 766021 | c.2652G>C | synonymous_variant | 0.18 |
rpoC | 766155 | p.Ala929Val | missense_variant | 0.95 |
rpoC | 766381 | c.3012C>T | synonymous_variant | 0.15 |
rpoC | 766384 | c.3015A>G | synonymous_variant | 0.16 |
rpoC | 766390 | c.3021C>T | synonymous_variant | 0.19 |
rpoC | 766408 | c.3039C>T | synonymous_variant | 0.21 |
rpoC | 766426 | c.3057C>T | synonymous_variant | 0.26 |
rpoC | 766447 | c.3078T>C | synonymous_variant | 0.27 |
rpoC | 766483 | c.3114G>C | synonymous_variant | 0.26 |
rpoC | 766484 | p.Val1039Ile | missense_variant | 0.26 |
rpoC | 766492 | c.3123T>C | synonymous_variant | 0.26 |
rpoC | 766495 | c.3126C>T | synonymous_variant | 0.28 |
rpoC | 766522 | c.3153C>G | synonymous_variant | 0.26 |
rpoC | 766528 | c.3159T>C | synonymous_variant | 0.28 |
rpoC | 766531 | c.3162G>T | synonymous_variant | 0.27 |
rpoC | 766543 | c.3174C>T | synonymous_variant | 0.25 |
rpoC | 766549 | c.3180G>C | synonymous_variant | 0.23 |
rpoC | 766609 | p.Ile1080Met | missense_variant | 0.15 |
rpoC | 766630 | c.3261G>C | synonymous_variant | 0.17 |
rpoC | 766645 | c.3276A>G | synonymous_variant | 0.19 |
rpoC | 766651 | c.3282T>C | synonymous_variant | 0.19 |
rpoC | 766657 | c.3288A>G | synonymous_variant | 0.2 |
rpoC | 766672 | c.3303T>C | synonymous_variant | 0.19 |
rpoC | 766726 | c.3357T>C | synonymous_variant | 0.15 |
rpoC | 766738 | c.3369G>T | synonymous_variant | 0.16 |
rpoC | 766750 | c.3381C>G | synonymous_variant | 0.19 |
rpoC | 766765 | c.3396A>C | synonymous_variant | 0.17 |
rpoC | 766774 | c.3405T>C | synonymous_variant | 0.21 |
rpoC | 766801 | c.3432C>A | synonymous_variant | 0.17 |
rpoC | 766804 | c.3435A>G | synonymous_variant | 0.17 |
rpoC | 766843 | c.3474T>C | synonymous_variant | 0.21 |
rpoC | 766861 | c.3492G>C | synonymous_variant | 0.19 |
rpoC | 766864 | c.3495G>C | synonymous_variant | 0.19 |
rpoC | 766894 | c.3525T>C | synonymous_variant | 0.17 |
rpoC | 766895 | c.3526T>C | synonymous_variant | 0.17 |
rpoC | 766900 | c.3531T>C | synonymous_variant | 0.15 |
rpoC | 766933 | c.3564A>G | synonymous_variant | 0.16 |
rpoC | 766963 | c.3594T>C | synonymous_variant | 0.14 |
rpoC | 766978 | c.3609C>G | synonymous_variant | 0.14 |
mmpL5 | 777185 | c.1296G>T | synonymous_variant | 1.0 |
rpsL | 781682 | c.123T>C | synonymous_variant | 0.15 |
rpsL | 781715 | c.156T>C | synonymous_variant | 0.19 |
rpsL | 781728 | c.169T>C | synonymous_variant | 0.2 |
rpsL | 781736 | c.177T>C | synonymous_variant | 0.2 |
rpsL | 781751 | c.192G>C | synonymous_variant | 0.19 |
rpsL | 781754 | c.195G>C | synonymous_variant | 0.18 |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.2 |
rpsL | 781793 | c.234G>C | synonymous_variant | 0.19 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.17 |
rpsL | 781841 | c.282C>G | synonymous_variant | 0.17 |
rpsL | 781868 | c.309T>C | synonymous_variant | 0.17 |
rpsL | 781871 | c.312G>C | synonymous_variant | 0.17 |
rpsL | 781892 | c.333A>G | synonymous_variant | 0.18 |
rpsL | 781898 | c.339A>T | synonymous_variant | 0.18 |
rpsL | 781916 | c.357T>C | synonymous_variant | 0.16 |
rpsL | 781929 | p.Gly124Ser | missense_variant | 0.18 |
rplC | 800612 | c.-197A>G | upstream_gene_variant | 0.23 |
rplC | 800618 | c.-191T>C | upstream_gene_variant | 0.24 |
rplC | 800648 | c.-161A>C | upstream_gene_variant | 0.26 |
rplC | 800654 | c.-155T>C | upstream_gene_variant | 0.26 |
rplC | 800693 | c.-116A>G | upstream_gene_variant | 0.24 |
rplC | 800703 | c.-106T>C | upstream_gene_variant | 0.19 |
rplC | 800715 | c.-94A>C | upstream_gene_variant | 0.19 |
rplC | 800720 | c.-89T>C | upstream_gene_variant | 0.2 |
rplC | 800723 | c.-86C>G | upstream_gene_variant | 0.18 |
rplC | 800738 | c.-71T>C | upstream_gene_variant | 0.16 |
rplC | 800747 | c.-62C>G | upstream_gene_variant | 0.18 |
rplC | 800771 | c.-38C>T | upstream_gene_variant | 0.2 |
rplC | 800814 | c.6A>G | synonymous_variant | 0.18 |
rplC | 800817 | c.9A>T | synonymous_variant | 0.19 |
rplC | 800844 | c.36T>C | synonymous_variant | 0.17 |
rplC | 800865 | c.57A>G | synonymous_variant | 0.16 |
rplC | 800867 | p.Ser20Asn | missense_variant | 0.17 |
rplC | 800874 | c.66A>G | synonymous_variant | 0.17 |
rplC | 800877 | c.69A>C | synonymous_variant | 0.17 |
rplC | 800880 | c.72A>G | synonymous_variant | 0.17 |
rplC | 800889 | c.81C>G | synonymous_variant | 0.16 |
rplC | 800939 | p.Arg44His | missense_variant | 0.13 |
rplC | 800982 | c.174C>T | synonymous_variant | 0.14 |
fbiC | 1302932 | p.Val1Gly | missense_variant | 1.0 |
fbiC | 1303151 | p.Gly74Asp | missense_variant | 1.0 |
fbiC | 1304811 | c.1881C>G | synonymous_variant | 0.14 |
fbiC | 1304817 | c.1887T>C | synonymous_variant | 0.14 |
fbiC | 1304832 | c.1902C>G | synonymous_variant | 0.15 |
fbiC | 1304872 | c.1942_1944delAGCinsTCG | synonymous_variant | 0.15 |
fbiC | 1304877 | c.1947T>C | synonymous_variant | 0.15 |
fbiC | 1304878 | c.1948_1950delCGCinsAGG | synonymous_variant | 0.15 |
fbiC | 1304893 | p.Gly655Arg | missense_variant | 0.18 |
fbiC | 1304925 | c.1995G>C | synonymous_variant | 0.15 |
fbiC | 1304928 | c.1998T>C | synonymous_variant | 0.16 |
fbiC | 1304934 | c.2004C>G | synonymous_variant | 0.15 |
fbiC | 1305298 | p.Lys790Gln | missense_variant | 0.95 |
Rv1258c | 1406311 | c.1030C>T | synonymous_variant | 1.0 |
atpE | 1461132 | p.Val30Ile | missense_variant | 0.14 |
atpE | 1461149 | c.105T>G | synonymous_variant | 0.17 |
atpE | 1461150 | p.Ile36Val | missense_variant | 0.17 |
atpE | 1461159 | p.Val39Ile | missense_variant | 0.16 |
atpE | 1461185 | c.141G>C | synonymous_variant | 0.16 |
atpE | 1461189 | c.145C>T | synonymous_variant | 0.17 |
atpE | 1461194 | c.150C>T | synonymous_variant | 0.15 |
atpE | 1461197 | c.153A>G | synonymous_variant | 0.15 |
atpE | 1461219 | c.175T>C | synonymous_variant | 0.15 |
atpE | 1461224 | c.180T>C | synonymous_variant | 0.14 |
atpE | 1461233 | c.189A>G | synonymous_variant | 0.15 |
rrs | 1472028 | n.183A>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472030 | n.185G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472034 | n.189T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472061 | n.216A>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476089 | n.2432T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476095 | n.2438C>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.16 |
inhA | 1674507 | c.306G>C | synonymous_variant | 0.18 |
inhA | 1674537 | c.336C>G | synonymous_variant | 0.17 |
inhA | 1674542 | p.Ala114Glu | missense_variant | 0.18 |
inhA | 1674549 | c.348G>C | synonymous_variant | 0.17 |
inhA | 1674555 | c.354G>A | synonymous_variant | 0.17 |
inhA | 1674561 | c.360C>T | synonymous_variant | 0.17 |
inhA | 1674564 | c.363C>T | synonymous_variant | 0.17 |
inhA | 1674582 | c.381T>C | synonymous_variant | 0.18 |
inhA | 1674585 | c.384T>C | synonymous_variant | 0.17 |
inhA | 1674589 | p.Met130Leu | missense_variant | 0.19 |
inhA | 1674624 | c.423A>C | synonymous_variant | 0.14 |
inhA | 1674627 | c.426T>G | synonymous_variant | 0.15 |
inhA | 1674630 | c.429C>G | synonymous_variant | 0.15 |
inhA | 1674743 | p.Lys181Thr | missense_variant | 0.15 |
rpsA | 1833541 | c.-1T>C | upstream_gene_variant | 0.14 |
rpsA | 1833589 | c.48A>T | synonymous_variant | 0.14 |
rpsA | 1833595 | c.54T>C | synonymous_variant | 0.18 |
rpsA | 1833619 | c.78A>C | synonymous_variant | 0.24 |
rpsA | 1833661 | c.120A>G | synonymous_variant | 0.21 |
rpsA | 1833667 | c.126C>G | synonymous_variant | 0.18 |
rpsA | 1833724 | c.183C>G | synonymous_variant | 0.18 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.19 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.2 |
rpsA | 1833745 | c.204G>C | synonymous_variant | 0.17 |
rpsA | 1833787 | c.246C>G | synonymous_variant | 0.19 |
rpsA | 1833790 | c.249T>A | synonymous_variant | 0.19 |
rpsA | 1833799 | c.258C>G | synonymous_variant | 0.19 |
rpsA | 1833811 | c.270G>C | synonymous_variant | 0.15 |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.17 |
rpsA | 1833940 | c.399C>G | synonymous_variant | 0.16 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.16 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.16 |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.15 |
rpsA | 1834015 | c.474G>C | synonymous_variant | 0.17 |
rpsA | 1834021 | c.480C>T | synonymous_variant | 0.14 |
rpsA | 1834097 | c.556_557delTCinsAG | synonymous_variant | 0.16 |
rpsA | 1834102 | c.561T>C | synonymous_variant | 0.14 |
rpsA | 1834275 | p.Ile245Thr | missense_variant | 1.0 |
rpsA | 1834546 | c.1005T>C | synonymous_variant | 0.16 |
rpsA | 1834555 | c.1014T>C | synonymous_variant | 0.15 |
rpsA | 1834606 | c.1065C>G | synonymous_variant | 0.15 |
rpsA | 1834609 | c.1068T>C | synonymous_variant | 0.19 |
rpsA | 1834622 | c.1081_1083delTCGinsAGC | synonymous_variant | 0.17 |
rpsA | 1834633 | c.1092A>G | synonymous_variant | 0.24 |
rpsA | 1834639 | c.1098T>C | synonymous_variant | 0.24 |
rpsA | 1834666 | c.1125G>C | synonymous_variant | 0.23 |
rpsA | 1834669 | c.1128G>C | synonymous_variant | 0.23 |
rpsA | 1834688 | c.1147_1149delAGTinsTCC | synonymous_variant | 0.2 |
rpsA | 1834732 | c.1191T>C | synonymous_variant | 0.24 |
rpsA | 1834733 | p.Ala398Pro | missense_variant | 0.25 |
rpsA | 1834753 | c.1212T>C | synonymous_variant | 0.24 |
rpsA | 1834765 | c.1224A>G | synonymous_variant | 0.21 |
rpsA | 1834792 | c.1251G>C | synonymous_variant | 0.14 |
tlyA | 1917936 | c.-4C>A | upstream_gene_variant | 1.0 |
ndh | 2101676 | p.Ala456Val | missense_variant | 1.0 |
pncA | 2289356 | c.-115G>T | upstream_gene_variant | 1.0 |
kasA | 2518234 | p.Glu40Asp | missense_variant | 1.0 |
ahpC | 2726638 | p.Ala149Val | missense_variant | 0.14 |
ahpC | 2726657 | c.465A>C | synonymous_variant | 0.14 |
Rv2752c | 3064837 | p.Leu452Trp | missense_variant | 0.97 |
thyX | 3067304 | c.642A>G | synonymous_variant | 0.15 |
thyX | 3067316 | c.630A>G | synonymous_variant | 0.14 |
thyX | 3067325 | c.621A>G | synonymous_variant | 0.15 |
thyX | 3067355 | c.591A>C | synonymous_variant | 0.14 |
thyX | 3067367 | c.579G>C | synonymous_variant | 0.2 |
thyX | 3067376 | c.570G>C | synonymous_variant | 0.18 |
thyX | 3067391 | c.555G>C | synonymous_variant | 0.18 |
thyX | 3067394 | c.552G>C | synonymous_variant | 0.19 |
thyX | 3067412 | c.534C>G | synonymous_variant | 0.22 |
thyX | 3067439 | c.507A>G | synonymous_variant | 0.19 |
thyX | 3067445 | c.501C>G | synonymous_variant | 0.17 |
thyX | 3067451 | c.495G>A | synonymous_variant | 0.17 |
thyX | 3067457 | c.489C>G | synonymous_variant | 0.15 |
thyX | 3067465 | p.Ile161Val | missense_variant | 0.15 |
thyX | 3067466 | c.480G>C | synonymous_variant | 0.15 |
thyA | 3073839 | c.633T>C | synonymous_variant | 0.14 |
thyA | 3073872 | p.Ile200Val | missense_variant | 0.18 |
thyA | 3073878 | c.594G>A | synonymous_variant | 0.17 |
thyA | 3073892 | c.580T>C | synonymous_variant | 0.19 |
thyA | 3073893 | c.579C>G | synonymous_variant | 0.19 |
thyA | 3073925 | c.547T>C | synonymous_variant | 0.2 |
thyA | 3073926 | c.546G>C | synonymous_variant | 0.21 |
thyA | 3073929 | c.543T>C | synonymous_variant | 0.23 |
thyA | 3073953 | c.519T>C | synonymous_variant | 0.16 |
thyA | 3073989 | c.483T>C | synonymous_variant | 0.15 |
thyA | 3074004 | c.468T>C | synonymous_variant | 0.14 |
thyA | 3074031 | c.441T>C | synonymous_variant | 0.14 |
thyA | 3074097 | c.375C>G | synonymous_variant | 0.19 |
thyA | 3074100 | c.372T>C | synonymous_variant | 0.16 |
thyA | 3074106 | c.366T>C | synonymous_variant | 0.17 |
thyA | 3074117 | c.355C>T | synonymous_variant | 0.16 |
thyA | 3074120 | c.352T>C | synonymous_variant | 0.15 |
thyA | 3074130 | c.342G>C | synonymous_variant | 0.15 |
Rv3083 | 3449643 | p.Asn380Lys | missense_variant | 1.0 |
fprA | 3474752 | p.Ile249Ser | missense_variant | 1.0 |
fprA | 3475315 | p.His437Asn | missense_variant | 1.0 |
Rv3236c | 3611967 | p.Ser384Pro | missense_variant | 1.0 |
fbiB | 3642581 | c.1047A>C | synonymous_variant | 0.24 |
fbiB | 3642593 | c.1059G>C | synonymous_variant | 0.25 |
fbiB | 3642602 | c.1068A>C | synonymous_variant | 0.24 |
fbiB | 3642605 | c.1071A>G | synonymous_variant | 0.25 |
fbiB | 3642614 | c.1080C>T | synonymous_variant | 0.24 |
fbiB | 3642620 | c.1086T>C | synonymous_variant | 0.27 |
fbiB | 3642656 | c.1122G>C | synonymous_variant | 0.25 |
fbiB | 3642659 | c.1125C>G | synonymous_variant | 0.24 |
fbiB | 3642662 | c.1128C>G | synonymous_variant | 0.21 |
fbiB | 3642668 | c.1134A>C | synonymous_variant | 0.24 |
fbiB | 3642677 | c.1143A>G | synonymous_variant | 0.24 |
fbiB | 3642680 | c.1146A>G | synonymous_variant | 0.27 |
fbiB | 3642684 | c.1150T>C | synonymous_variant | 0.24 |
fbiB | 3642694 | p.Ala387Gly | missense_variant | 0.23 |
fbiB | 3642696 | c.1162C>T | synonymous_variant | 0.24 |
fbiB | 3642701 | c.1167C>G | synonymous_variant | 0.23 |
fbiB | 3642710 | c.1176G>C | synonymous_variant | 0.21 |
fbiB | 3642719 | c.1185T>C | synonymous_variant | 0.17 |
rpoA | 3877743 | c.765T>C | synonymous_variant | 0.19 |
rpoA | 3877756 | p.Ile251Thr | missense_variant | 0.84 |
rpoA | 3877764 | c.744C>G | synonymous_variant | 0.15 |
rpoA | 3877770 | c.738A>G | synonymous_variant | 0.15 |
rpoA | 3877776 | c.732T>C | synonymous_variant | 0.15 |
rpoA | 3877818 | c.690A>G | synonymous_variant | 0.16 |
rpoA | 3877839 | c.669G>C | synonymous_variant | 0.17 |
rpoA | 3877857 | c.651G>A | synonymous_variant | 0.22 |
rpoA | 3877866 | c.642G>C | synonymous_variant | 0.21 |
rpoA | 3877872 | c.636C>T | synonymous_variant | 0.24 |
rpoA | 3877875 | c.633T>G | synonymous_variant | 0.19 |
rpoA | 3877899 | p.Ser203Thr | missense_variant | 0.22 |
rpoA | 3877905 | c.603A>G | synonymous_variant | 0.21 |
rpoA | 3877908 | p.Asn200Ser | missense_variant | 0.21 |
rpoA | 3877953 | c.555G>A | synonymous_variant | 0.21 |
rpoA | 3877962 | c.546G>T | synonymous_variant | 0.21 |
rpoA | 3877986 | c.522G>C | synonymous_variant | 0.24 |
rpoA | 3877989 | c.519A>G | synonymous_variant | 0.23 |
rpoA | 3878001 | c.507A>G | synonymous_variant | 0.17 |
rpoA | 3878065 | p.Pro148Arg | missense_variant | 0.88 |
ddn | 3986648 | c.-196C>G | upstream_gene_variant | 0.17 |
ddn | 3986655 | c.-189A>T | upstream_gene_variant | 0.18 |
ddn | 3986660 | c.-184C>T | upstream_gene_variant | 0.17 |
ddn | 3986665 | c.-179G>C | upstream_gene_variant | 0.17 |
ddn | 3986667 | c.-177_-176delCTinsAC | upstream_gene_variant | 0.17 |
ddn | 3986681 | c.-163C>G | upstream_gene_variant | 0.18 |
ddn | 3986696 | c.-148G>T | upstream_gene_variant | 0.13 |
ddn | 3986977 | p.Pro45Arg | missense_variant | 1.0 |
clpC1 | 4038368 | c.2337T>C | synonymous_variant | 0.14 |
clpC1 | 4038398 | c.2307G>T | synonymous_variant | 0.16 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 0.19 |
clpC1 | 4038419 | c.2286T>C | synonymous_variant | 0.17 |
clpC1 | 4038434 | c.2271G>C | synonymous_variant | 0.17 |
clpC1 | 4038444 | p.Ala754Lys | missense_variant | 0.18 |
clpC1 | 4038446 | c.2259T>C | synonymous_variant | 0.18 |
clpC1 | 4038452 | c.2253G>C | synonymous_variant | 0.18 |
clpC1 | 4038461 | p.Ala748Asp | missense_variant | 0.17 |
clpC1 | 4038782 | c.1923G>C | synonymous_variant | 0.14 |
clpC1 | 4039388 | c.1317C>A | synonymous_variant | 0.14 |
clpC1 | 4039391 | c.1314T>G | synonymous_variant | 0.15 |
clpC1 | 4039409 | c.1296T>C | synonymous_variant | 0.21 |
clpC1 | 4039412 | c.1293T>G | synonymous_variant | 0.2 |
clpC1 | 4039430 | c.1275T>C | synonymous_variant | 0.21 |
clpC1 | 4039442 | c.1263A>G | synonymous_variant | 0.24 |
clpC1 | 4039448 | c.1257A>G | synonymous_variant | 0.23 |
clpC1 | 4039454 | c.1251A>G | synonymous_variant | 0.21 |
clpC1 | 4039463 | c.1242C>G | synonymous_variant | 0.18 |
clpC1 | 4039466 | c.1239T>C | synonymous_variant | 0.18 |
clpC1 | 4039469 | c.1236T>C | synonymous_variant | 0.18 |
clpC1 | 4039481 | c.1224T>G | synonymous_variant | 0.2 |
clpC1 | 4039484 | c.1221T>G | synonymous_variant | 0.2 |
clpC1 | 4039517 | c.1188C>G | synonymous_variant | 0.22 |
clpC1 | 4039524 | p.Phe394Tyr | missense_variant | 0.21 |
clpC1 | 4039526 | c.1179G>C | synonymous_variant | 0.21 |
clpC1 | 4039547 | c.1158C>G | synonymous_variant | 0.15 |
clpC1 | 4039553 | c.1152C>G | synonymous_variant | 0.15 |
clpC1 | 4039562 | c.1143C>G | synonymous_variant | 0.17 |
clpC1 | 4039565 | c.1140G>C | synonymous_variant | 0.2 |
clpC1 | 4039576 | p.Ala377Ser | missense_variant | 0.18 |
clpC1 | 4039577 | c.1128T>C | synonymous_variant | 0.17 |
clpC1 | 4039586 | c.1119G>C | synonymous_variant | 0.19 |
clpC1 | 4039610 | c.1095G>C | synonymous_variant | 0.21 |
clpC1 | 4039616 | c.1089G>C | synonymous_variant | 0.18 |
clpC1 | 4039622 | c.1083C>G | synonymous_variant | 0.17 |
clpC1 | 4039682 | c.1023C>G | synonymous_variant | 0.15 |
clpC1 | 4039685 | c.1020C>T | synonymous_variant | 0.15 |
clpC1 | 4039694 | c.1011G>C | synonymous_variant | 0.15 |
clpC1 | 4040273 | c.432T>C | synonymous_variant | 0.14 |
clpC1 | 4040354 | c.351A>G | synonymous_variant | 0.17 |
clpC1 | 4040363 | c.342A>C | synonymous_variant | 0.17 |
clpC1 | 4040369 | c.336C>G | synonymous_variant | 0.18 |
clpC1 | 4040380 | c.325T>C | synonymous_variant | 0.2 |
clpC1 | 4040381 | c.324T>C | synonymous_variant | 0.2 |
clpC1 | 4040387 | c.318A>G | synonymous_variant | 0.2 |
clpC1 | 4040393 | c.312G>C | synonymous_variant | 0.18 |
clpC1 | 4040411 | c.294T>C | synonymous_variant | 0.16 |
clpC1 | 4040538 | p.Leu56Arg | missense_variant | 0.92 |
embC | 4240123 | c.261C>G | synonymous_variant | 0.14 |
embC | 4240687 | c.825C>G | synonymous_variant | 0.15 |
embC | 4240693 | c.831T>C | synonymous_variant | 0.16 |
embC | 4240706 | p.Val282Thr | missense_variant | 0.15 |
embC | 4240726 | c.864G>C | synonymous_variant | 0.17 |
embC | 4240819 | c.957A>G | synonymous_variant | 0.15 |
embC | 4240825 | c.963G>A | synonymous_variant | 0.17 |
embC | 4240831 | c.969T>G | synonymous_variant | 0.16 |
embC | 4240880 | p.Ala340Thr | missense_variant | 0.13 |
embC | 4241035 | c.1173G>A | synonymous_variant | 0.13 |
embC | 4241689 | c.1827G>C | synonymous_variant | 0.16 |
embC | 4241691 | p.Gly610Ala | missense_variant | 0.15 |
embC | 4241695 | c.1833T>G | synonymous_variant | 0.15 |
embC | 4241707 | c.1845G>C | synonymous_variant | 0.14 |
embC | 4241746 | c.1884C>T | synonymous_variant | 0.14 |
embC | 4241747 | p.Val629Leu | missense_variant | 0.14 |
embC | 4241770 | c.1908T>C | synonymous_variant | 0.15 |
embC | 4241791 | c.1929G>C | synonymous_variant | 0.15 |
embA | 4245342 | p.Ser704Pro | missense_variant | 1.0 |
embB | 4245764 | c.-750G>C | upstream_gene_variant | 0.16 |
embA | 4245771 | p.Asn847Ser | missense_variant | 0.17 |
embB | 4245807 | c.-707_-705delTTAinsCTG | upstream_gene_variant | 0.19 |
embA | 4245820 | p.Ser863Thr | missense_variant | 0.17 |
embB | 4245830 | c.-684G>C | upstream_gene_variant | 0.18 |
embB | 4245845 | c.-669T>G | upstream_gene_variant | 0.15 |
embB | 4245848 | c.-666C>G | upstream_gene_variant | 0.15 |
embB | 4247317 | c.804G>C | synonymous_variant | 0.13 |
embB | 4247326 | c.813A>G | synonymous_variant | 0.14 |
embB | 4247328 | p.Ser272Asn | missense_variant | 0.14 |
embB | 4247338 | c.825C>G | synonymous_variant | 0.17 |
embB | 4248711 | c.2198_2199insT | frameshift_variant | 1.0 |
aftB | 4267498 | p.Glu447Lys | missense_variant | 0.97 |
aftB | 4268559 | p.Leu93Gln | missense_variant | 1.0 |