Rv0006 - c.2400T>C
Drug resistance types
31 Sensitive
2 RR-TB
111 HR-TB
5 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
38 Other
lineage Counts
| lineage | Count |
|---|---|
| 109 | |
| lineage4.1.2.1 | 4 |
| lineage4 | 36 |
| lineage4.9 | 9 |
| lineage4.1 | 1 |
| lineage4.5 | 1 |
| lineage4.8 | 1 |
| lineage2.2.1 | 6 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage4.3.4 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage2.1 | 1 |
| lineage4.3 | 1 |
| lineage4.1.1 | 1 |
| lineage3 | 1 |
| lineage4.9;lineage2.1 | 1 |
| lineage3.1 | 2 |
| lineage1.1 | 1 |
| La2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4;lineage3.1 | 1 |
| lineage2.2 | 2 |
| lineage3.1.2 | 1 |
| lineage4.3.2 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage2 | 1 |
| lineage2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 189 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1174897 | HR-TB | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169194 | Other | None | SRR1158918 | Sensitive | lineage4 | None | SRR1172234 | Other | None | SRR1172310 | HR-TB | None | SRR14782405 | HR-TB | None | SRR12416824 | HR-TB | None | SRR13861305 | Other | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None | SRR28239783 | Sensitive | lineage4.8 | None | SRR1640750 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3675465 | HR-TB | None | SRR6325445 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675482 | HR-TB | None | SRR3675486 | HR-TB | None | ERR161033 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR181744 | HR-TB | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675234 | Other | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675270 | HR-TB | None | ERR212123 | Other | None | ERR212033 | HR-TB | None | SRR3675558 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | ERR176643 | HR-TB | None | SRR3675383 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675545 | HR-TB | None | ERR4817060 | RR-TB | None | ERR2509673 | Other | lineage2.2.1 | None | SRR3675574 | HR-TB | None | ERR4817239 | Sensitive | lineage4.1.1 | None | SRR3675571 | HR-TB | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4819051 | Other | lineage4 | None | ERR4818615 | Other | None | SRR5341432 | HR-TB | lineage4 | None | SRR5007188 | Other | lineage4 | None | SRR5341453 | Sensitive | None | SRR5341387 | Other | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | ERR1035138 | MDR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341302 | HR-TB | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341313 | HR-TB | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341315 | Sensitive | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341330 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341469 | Other | lineage4 | None | SRR5341467 | Other | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693239 | HR-TB | None | SRR5341470 | HR-TB | None | ERR4821053 | Other | lineage3 | None | ERR2693257 | Other | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR6045832 | HR-TB | lineage4.9 | None | ERR278594 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6045233 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6045952 | HR-TB | None | SRR6045053 | Other | None | SRR6046046 | Other | None | SRR6046066 | HR-TB | None | SRR6046397 | Other | None | SRR6325444 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6325447 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6325442 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR502524 | HR-TB | La2 | None | ERR4831117 | HR-TB | None | ERR294266 | HR-TB | None | ERR323036 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR294248 | HR-TB | None | ERR5311099 | HR-TB | None | ERR502532 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | SRR8217918 | HR-TB | None | ERR323038 | HR-TB | None | ERR1035122 | Sensitive | None | SRR7535082 | Sensitive | lineage4 | None | ERR323039 | HR-TB | None | ERR323043 | HR-TB | None | ERR323063 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | SRR7496509 | Other | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR1034652 | Other | None | ERR1063857 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR1063896 | Sensitive | None | ERR137286 | Sensitive | lineage4 | None | ERR3283036 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283051 | Other | lineage4.9 | None | ERR3283058 | Other | lineage4.9 | None | ERR3797017 | Other | None | ERR3287462 | HR-TB | lineage4.3.4.2 | None | ERR3797016 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797014 | Other | None | ERR3797043 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR3797036 | HR-TB | None | ERR3797044 | Other | None | ERR3797069 | Other | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR3797083 | HR-TB | None | ERR5336148 | Other | None | ERR4769452 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4797264 | Sensitive | None | ERR4769450 | HR-TB | None | ERR4797184 | Sensitive | lineage4 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4797474 | Other | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR702404 | HR-TB | None | ERR6358837 | HR-TB | None | ERR736867 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR702406 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR736835 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR736874 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR8976043 | HR-TB | None | ERR9119669 | HR-TB | None | SRR069989 | HR-TB | lineage2 | None | ERR987722 | HR-TB | None | SRR069981 | HR-TB | lineage2.2.2 | None |
|---|
