TB-Profiler result

Run: ERR2509673
Summary

Run ID: ERR2509673

Sample name:

Date: 31-03-2023 18:32:09

Number of reads: 5681854

Percentage reads mapped: 82.65

Strain: lineage2.2.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 0.99
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 1.0
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
embB 4247448 p.His312Arg missense_variant 0.22 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6209 c.970C>T synonymous_variant 0.15
gyrA 6824 c.-478C>T upstream_gene_variant 0.17
gyrA 6841 c.-461T>C upstream_gene_variant 0.17
gyrA 6844 c.-458T>G upstream_gene_variant 0.19
gyrA 6853 c.-449A>G upstream_gene_variant 0.19
gyrA 6856 c.-446T>C upstream_gene_variant 0.18
gyrA 6859 c.-443T>C upstream_gene_variant 0.19
gyrA 6862 c.-440C>G upstream_gene_variant 0.18
gyrA 6878 c.-424T>C upstream_gene_variant 0.15
gyrA 6881 c.-421T>C upstream_gene_variant 0.15
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7451 c.150C>G synonymous_variant 0.16
gyrA 7457 c.156T>C synonymous_variant 0.17
gyrA 7472 c.171T>C synonymous_variant 0.19
gyrA 7475 c.174A>C synonymous_variant 0.19
gyrA 7480 p.Phe60Tyr missense_variant 0.19
gyrA 7484 c.183T>C synonymous_variant 0.19
gyrA 7487 c.186C>G synonymous_variant 0.19
gyrA 7490 c.189C>T synonymous_variant 0.21
gyrA 7523 c.222C>G synonymous_variant 0.25
gyrA 7532 c.231T>C synonymous_variant 0.24
gyrA 7541 c.240C>G synonymous_variant 0.23
gyrA 7571 c.270G>C synonymous_variant 0.18
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7595 c.294C>G synonymous_variant 0.16
gyrA 7607 c.306C>G synonymous_variant 0.15
gyrA 7626 c.325C>T synonymous_variant 0.17
gyrA 7631 c.330G>C synonymous_variant 0.15
gyrA 7728 c.427_429delAGGinsCGC synonymous_variant 0.14
gyrA 7760 c.459C>T synonymous_variant 0.21
gyrA 7763 c.462T>C synonymous_variant 0.2
gyrA 7799 c.498A>G synonymous_variant 0.19
gyrA 7835 c.534A>G synonymous_variant 0.17
gyrA 7838 c.537C>G synonymous_variant 0.16
gyrA 7892 c.591G>C synonymous_variant 0.15
gyrA 7898 p.Asp199Glu missense_variant 0.17
gyrA 7919 p.Glu206Asp missense_variant 0.15
gyrA 7923 p.His208Tyr missense_variant 0.13
gyrA 8111 c.810G>C synonymous_variant 0.15
gyrA 8168 c.867A>G synonymous_variant 0.15
gyrA 8177 c.876A>C synonymous_variant 0.15
gyrA 8198 c.897T>C synonymous_variant 0.17
gyrA 8207 c.906T>C synonymous_variant 0.15
gyrA 8219 c.918T>C synonymous_variant 0.15
gyrA 8225 c.924T>C synonymous_variant 0.15
gyrA 8462 c.1161A>G synonymous_variant 0.14
gyrA 8471 c.1170T>C synonymous_variant 0.15
gyrA 8480 c.1179C>T synonymous_variant 0.14
gyrA 8852 c.1551T>C synonymous_variant 0.17
gyrA 8858 c.1557T>C synonymous_variant 0.15
gyrA 9242 c.1941A>C synonymous_variant 0.18
gyrA 9252 p.Val651Ile missense_variant 0.2
gyrA 9275 c.1974G>A synonymous_variant 0.18
gyrA 9278 c.1977G>C synonymous_variant 0.16
gyrA 9281 c.1980C>G synonymous_variant 0.17
gyrA 9284 c.1983T>C synonymous_variant 0.18
gyrA 9291 c.1990C>T synonymous_variant 0.19
gyrA 9296 c.1995T>C synonymous_variant 0.19
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9311 c.2010C>T synonymous_variant 0.17
gyrA 9323 c.2022C>G synonymous_variant 0.15
gyrA 9335 c.2034G>C synonymous_variant 0.14
gyrA 9665 c.2364A>G synonymous_variant 0.16
gyrA 9666 p.Arg789Gly missense_variant 0.16
gyrA 9674 c.2373T>C synonymous_variant 0.15
gyrA 9677 c.2376C>T synonymous_variant 0.15
gyrA 9701 c.2400T>C synonymous_variant 0.15
fgd1 490827 c.45C>T synonymous_variant 0.19
fgd1 490833 c.51G>C synonymous_variant 0.23
fgd1 490842 c.60C>G synonymous_variant 0.23
fgd1 490851 c.69A>C synonymous_variant 0.23
fgd1 490887 c.105G>C synonymous_variant 0.24
fgd1 490902 c.120T>C synonymous_variant 0.18
fgd1 490905 c.123T>C synonymous_variant 0.17
fgd1 490911 c.129T>G synonymous_variant 0.16
fgd1 490917 c.135C>A synonymous_variant 0.14
fgd1 491106 c.324T>C synonymous_variant 0.16
fgd1 491121 c.339A>G synonymous_variant 0.21
fgd1 491137 p.Glu119Gln missense_variant 0.25
fgd1 491144 p.Ala121Glu missense_variant 0.25
fgd1 491166 c.384G>C synonymous_variant 0.31
fgd1 491181 c.399T>C synonymous_variant 0.34
fgd1 491191 p.Gly137Arg missense_variant 0.34
fgd1 491196 c.414A>G synonymous_variant 0.33
fgd1 491202 c.420G>C synonymous_variant 0.31
fgd1 491203 p.Gln141Glu missense_variant 0.31
fgd1 491212 p.Ser144Arg missense_variant 0.34
fgd1 491217 c.435T>C synonymous_variant 0.33
fgd1 491232 c.450T>C synonymous_variant 0.29
fgd1 491241 p.Asp153Glu missense_variant 0.34
fgd1 491244 c.462T>C synonymous_variant 0.33
fgd1 491259 c.477T>C synonymous_variant 0.37
fgd1 491286 c.504G>C synonymous_variant 0.41
fgd1 491292 c.510G>C synonymous_variant 0.38
fgd1 491295 c.513C>G synonymous_variant 0.35
fgd1 491296 p.Val172Ile missense_variant 0.38
fgd1 491319 c.537G>C synonymous_variant 0.29
fgd1 491331 c.549G>A synonymous_variant 0.25
fgd1 491349 c.567T>C synonymous_variant 0.18
fgd1 491502 c.720G>A synonymous_variant 0.21
fgd1 491508 c.726A>G synonymous_variant 0.19
fgd1 491509 c.727T>C synonymous_variant 0.19
fgd1 491512 p.Asn244Glu missense_variant 0.19
fgd1 491526 c.744T>C synonymous_variant 0.21
fgd1 491532 c.750G>T synonymous_variant 0.22
fgd1 491542 c.760T>C synonymous_variant 0.21
fgd1 491547 c.765A>C synonymous_variant 0.21
fgd1 491550 c.768T>C synonymous_variant 0.21
fgd1 491583 c.801G>A synonymous_variant 0.18
fgd1 491595 c.813C>G synonymous_variant 0.16
fgd1 491601 c.819T>C synonymous_variant 0.16
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575907 p.Ala187Val missense_variant 0.99
ccsA 620349 c.459A>G synonymous_variant 0.14
ccsA 620362 p.Ala158Thr missense_variant 0.18
ccsA 620367 c.477T>C synonymous_variant 0.18
ccsA 620373 c.483C>G synonymous_variant 0.21
ccsA 620385 c.495G>C synonymous_variant 0.22
ccsA 620388 c.498A>G synonymous_variant 0.22
ccsA 620412 c.522T>C synonymous_variant 0.23
ccsA 620415 c.525T>C synonymous_variant 0.22
ccsA 620433 c.543C>G synonymous_variant 0.2
ccsA 620436 c.546T>C synonymous_variant 0.19
ccsA 620439 c.549T>C synonymous_variant 0.19
ccsA 620445 c.555A>G synonymous_variant 0.18
ccsA 620461 p.Val191Ile missense_variant 0.15
ccsA 620604 c.714C>T synonymous_variant 0.13
ccsA 620619 c.729G>C synonymous_variant 0.15
ccsA 620622 c.732G>C synonymous_variant 0.17
ccsA 620625 p.Ile245Met missense_variant 0.99
ccsA 620631 c.741T>C synonymous_variant 0.18
ccsA 620646 c.756G>A synonymous_variant 0.2
ccsA 620661 c.771C>G synonymous_variant 0.2
ccsA 620778 c.888T>C synonymous_variant 0.17
rpoB 760223 c.417T>C synonymous_variant 0.15
rpoB 760235 c.429T>C synonymous_variant 0.14
rpoB 760253 c.447T>C synonymous_variant 0.16
rpoB 760283 c.477G>C synonymous_variant 0.16
rpoB 760307 c.501T>C synonymous_variant 0.16
rpoB 760328 c.522G>C synonymous_variant 0.19
rpoB 760331 c.525G>C synonymous_variant 0.19
rpoB 760337 c.531C>G synonymous_variant 0.17
rpoB 760340 c.534G>C synonymous_variant 0.17
rpoB 760361 c.555T>C synonymous_variant 0.21
rpoB 760376 p.Asp190Glu missense_variant 0.23
rpoB 760406 c.600G>C synonymous_variant 0.2
rpoB 760418 c.612G>C synonymous_variant 0.18
rpoB 760424 c.618C>G synonymous_variant 0.19
rpoB 760430 c.624T>C synonymous_variant 0.2
rpoB 760484 c.678A>G synonymous_variant 0.15
rpoB 760522 p.Ser239Asn missense_variant 0.17
rpoB 760564 p.Arg253Leu missense_variant 0.14
rpoB 760591 p.Val262Ala missense_variant 0.14
rpoB 760611 c.805T>C synonymous_variant 0.18
rpoB 760634 c.828T>C synonymous_variant 0.21
rpoB 760646 c.840C>G synonymous_variant 0.18
rpoB 760655 c.849A>G synonymous_variant 0.18
rpoB 760661 c.855A>C synonymous_variant 0.17
rpoB 760670 c.864G>C synonymous_variant 0.17
rpoB 760674 c.868T>C synonymous_variant 0.18
rpoB 760679 c.873A>G synonymous_variant 0.16
rpoB 760683 c.877T>C synonymous_variant 0.16
rpoB 760859 c.1053T>C synonymous_variant 0.14
rpoB 760862 c.1056G>C synonymous_variant 0.14
rpoB 760869 p.Val355Ile missense_variant 0.16
rpoB 760928 c.1122G>C synonymous_variant 0.16
rpoB 760934 c.1128C>T synonymous_variant 0.17
rpoB 760946 c.1140A>G synonymous_variant 0.16
rpoB 760982 c.1176G>C synonymous_variant 0.15
rpoB 760991 c.1185G>C synonymous_variant 0.15
rpoB 761021 c.1215G>C synonymous_variant 0.15
rpoB 761027 c.1221A>G synonymous_variant 0.14
rpoB 761051 c.1245G>T synonymous_variant 0.14
rpoB 761054 c.1248G>A synonymous_variant 0.14
rpoB 761060 c.1254C>G synonymous_variant 0.15
rpoB 761063 c.1257C>G synonymous_variant 0.15
rpoB 761097 c.1291_1292delAGinsTC synonymous_variant 0.15
rpoB 761102 c.1296A>G synonymous_variant 0.17
rpoB 761180 c.1374A>C synonymous_variant 0.16
rpoB 761183 c.1377T>G synonymous_variant 0.15
rpoB 761189 c.1383T>G synonymous_variant 0.17
rpoB 761222 c.1416G>C synonymous_variant 0.24
rpoB 761249 c.1443A>G synonymous_variant 0.22
rpoB 761255 c.1449T>G synonymous_variant 0.21
rpoB 761261 c.1455G>T synonymous_variant 0.2
rpoB 761297 c.1491C>T synonymous_variant 0.16
rpoB 761327 c.1521A>G synonymous_variant 0.17
rpoB 761510 c.1704T>C synonymous_variant 0.16
rpoB 761531 c.1725C>G synonymous_variant 0.21
rpoB 761537 c.1731C>G synonymous_variant 0.23
rpoB 761570 c.1764T>C synonymous_variant 0.2
rpoB 761573 c.1767C>G synonymous_variant 0.2
rpoB 761579 c.1773G>C synonymous_variant 0.22
rpoB 761606 c.1800C>G synonymous_variant 0.25
rpoB 761612 c.1806G>C synonymous_variant 0.24
rpoB 761615 c.1809A>C synonymous_variant 0.23
rpoB 761636 c.1830G>T synonymous_variant 0.24
rpoB 761645 c.1839C>G synonymous_variant 0.23
rpoB 761648 c.1842T>C synonymous_variant 0.23
rpoB 761657 c.1851C>G synonymous_variant 0.22
rpoB 761675 c.1869G>C synonymous_variant 0.17
rpoB 761815 p.Ala670Asp missense_variant 0.13
rpoB 761847 p.Cys681Ser missense_variant 0.14
rpoB 761873 c.2067A>G synonymous_variant 0.16
rpoB 761882 c.2076C>G synonymous_variant 0.17
rpoB 761885 c.2079T>C synonymous_variant 0.15
rpoB 761891 c.2085G>C synonymous_variant 0.16
rpoB 761906 c.2100C>G synonymous_variant 0.17
rpoB 761909 c.2103T>C synonymous_variant 0.17
rpoB 761912 c.2106T>C synonymous_variant 0.17
rpoB 761915 p.Asp703Glu missense_variant 0.17
rpoB 761916 p.Asp704Asn missense_variant 0.17
rpoB 761924 c.2118G>A synonymous_variant 0.22
rpoB 761948 c.2142G>C synonymous_variant 0.24
rpoB 761954 c.2148C>G synonymous_variant 0.24
rpoB 761969 c.2163G>A synonymous_variant 0.26
rpoB 761999 c.2193G>C synonymous_variant 0.25
rpoB 762008 c.2202C>G synonymous_variant 0.26
rpoB 762014 c.2208C>T synonymous_variant 0.22
rpoB 762017 c.2211A>G synonymous_variant 0.22
rpoB 762053 c.2247T>C synonymous_variant 0.22
rpoB 762062 c.2256T>C synonymous_variant 0.21
rpoB 762065 c.2259T>C synonymous_variant 0.21
rpoB 762083 c.2277T>C synonymous_variant 0.18
rpoB 762086 c.2280G>C synonymous_variant 0.19
rpoB 762101 c.2295C>G synonymous_variant 0.17
rpoB 762114 p.Ile770Val missense_variant 0.16
rpoB 762131 c.2325C>G synonymous_variant 0.2
rpoB 762140 c.2334G>C synonymous_variant 0.17
rpoB 762143 c.2337T>C synonymous_variant 0.18
rpoB 762149 c.2343G>C synonymous_variant 0.2
rpoB 762167 c.2361T>C synonymous_variant 0.21
rpoB 762176 c.2370T>C synonymous_variant 0.22
rpoB 762185 c.2379G>C synonymous_variant 0.24
rpoB 762218 c.2412T>G synonymous_variant 0.26
rpoB 762254 c.2448T>C synonymous_variant 0.23
rpoB 762266 c.2460T>C synonymous_variant 0.23
rpoB 762284 c.2478G>C synonymous_variant 0.24
rpoB 762293 c.2487T>C synonymous_variant 0.23
rpoB 762317 c.2511A>G synonymous_variant 0.16
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763070 c.-300T>C upstream_gene_variant 0.16
rpoC 763076 c.-294C>G upstream_gene_variant 0.15
rpoC 763085 c.-285C>G upstream_gene_variant 0.14
rpoC 763115 c.-255T>C upstream_gene_variant 0.17
rpoC 763148 c.-222G>C upstream_gene_variant 0.17
rpoC 763158 c.-212C>T upstream_gene_variant 0.16
rpoC 763441 c.72C>G synonymous_variant 0.19
rpoC 763444 c.75T>C synonymous_variant 0.18
rpoC 763456 c.87A>G synonymous_variant 0.18
rpoC 763468 c.99G>C synonymous_variant 0.16
rpoC 763486 c.117T>C synonymous_variant 0.15
rpoC 763570 c.201G>C synonymous_variant 0.16
rpoC 763594 c.225C>T synonymous_variant 0.2
rpoC 763633 c.264T>C synonymous_variant 0.17
rpoC 763919 c.550C>T synonymous_variant 0.14
rpoC 764257 c.888G>C synonymous_variant 0.14
rpoC 764365 c.996C>T synonymous_variant 0.14
rpoC 764446 c.1077T>C synonymous_variant 0.14
rpoC 764714 c.1345C>T synonymous_variant 0.18
rpoC 764720 c.1351C>T synonymous_variant 0.17
rpoC 764752 c.1383G>C synonymous_variant 0.16
rpoC 764764 c.1395T>C synonymous_variant 0.2
rpoC 764791 c.1422C>G synonymous_variant 0.16
rpoC 764809 c.1440C>T synonymous_variant 0.15
rpoC 764812 c.1443C>G synonymous_variant 0.15
rpoC 764830 c.1461C>G synonymous_variant 0.17
rpoC 764858 c.1489T>C synonymous_variant 0.16
rpoC 764872 c.1503A>G synonymous_variant 0.16
rpoC 764893 c.1524T>C synonymous_variant 0.17
rpoC 764911 c.1542A>G synonymous_variant 0.19
rpoC 764923 c.1554A>G synonymous_variant 0.19
rpoC 764932 c.1563C>A synonymous_variant 0.15
rpoC 764968 c.1599T>C synonymous_variant 0.15
rpoC 765383 p.Met672Leu missense_variant 0.21
rpoC 765404 p.Leu679Val missense_variant 0.22
rpoC 765409 c.2040T>C synonymous_variant 0.23
rpoC 765412 c.2043T>C synonymous_variant 0.23
rpoC 765421 c.2052C>G synonymous_variant 0.24
rpoC 765451 c.2082C>G synonymous_variant 0.16
rpoC 765452 p.Ala695Ser missense_variant 0.17
rpoC 765478 c.2109T>C synonymous_variant 0.15
rpoC 765493 c.2124G>C synonymous_variant 0.16
rpoC 765499 c.2130C>G synonymous_variant 0.15
rpoC 765541 c.2172C>G synonymous_variant 0.2
rpoC 765553 c.2184C>T synonymous_variant 0.18
rpoC 765556 c.2187G>C synonymous_variant 0.17
rpoC 765559 c.2190G>C synonymous_variant 0.17
rpoC 765578 c.2209C>T synonymous_variant 0.15
rpoC 765583 c.2214G>T synonymous_variant 0.14
rpoC 765613 p.His748Gln missense_variant 0.15
rpoC 765625 c.2256C>G synonymous_variant 0.15
rpoC 765658 c.2289C>T synonymous_variant 0.15
rpoC 765700 c.2331T>C synonymous_variant 0.15
rpoC 765826 c.2457T>C synonymous_variant 0.15
rpoC 765835 c.2466C>T synonymous_variant 0.16
rpoC 765883 c.2514C>G synonymous_variant 0.23
rpoC 765886 c.2517C>G synonymous_variant 0.21
rpoC 765892 c.2523T>C synonymous_variant 0.19
rpoC 765928 c.2559C>G synonymous_variant 0.16
rpoC 766069 c.2700G>A synonymous_variant 0.14
rpoC 766082 p.Ala905Gln missense_variant 0.15
rpoC 766096 c.2727G>C synonymous_variant 0.17
rpoC 766105 c.2736C>T synonymous_variant 0.18
rpoC 766129 c.2760C>G synonymous_variant 0.17
rpoC 766135 c.2766G>A synonymous_variant 0.18
rpoC 766142 c.2773C>T synonymous_variant 0.14
rpoC 766345 c.2976T>C synonymous_variant 0.15
rpoC 766363 c.2994G>C synonymous_variant 0.17
rpoC 766381 c.3012C>T synonymous_variant 0.21
rpoC 766384 c.3015A>G synonymous_variant 0.21
rpoC 766390 c.3021C>T synonymous_variant 0.2
rpoC 766408 c.3039C>T synonymous_variant 0.19
rpoC 766426 c.3057C>T synonymous_variant 0.17
rpoC 766444 c.3075C>G synonymous_variant 0.19
rpoC 766447 c.3078T>C synonymous_variant 0.2
rpoC 766483 c.3114G>C synonymous_variant 0.2
rpoC 766484 p.Val1039Ile missense_variant 0.2
rpoC 766492 c.3123T>C synonymous_variant 0.22
rpoC 766495 c.3126C>T synonymous_variant 0.22
rpoC 766528 c.3159T>G synonymous_variant 0.21
rpoC 766543 c.3174C>T synonymous_variant 0.16
rpoC 766573 c.3204T>C synonymous_variant 0.15
rpoC 766583 p.Gly1072Ser missense_variant 0.15
rpoC 766597 c.3228C>G synonymous_variant 0.15
rpoC 766609 p.Ile1080Met missense_variant 0.15
rpoC 766630 c.3261G>C synonymous_variant 0.18
rpoC 766645 c.3276A>G synonymous_variant 0.22
rpoC 766651 c.3282T>C synonymous_variant 0.25
rpoC 766657 c.3288A>G synonymous_variant 0.25
rpoC 766672 c.3303T>C synonymous_variant 0.27
rpoC 766738 c.3369G>T synonymous_variant 0.31
rpoC 766750 c.3381C>G synonymous_variant 0.3
rpoC 766765 c.3396A>C synonymous_variant 0.29
rpoC 766769 c.3400C>T synonymous_variant 0.29
rpoC 766774 c.3405T>C synonymous_variant 0.28
rpoC 766801 c.3432C>G synonymous_variant 0.24
rpoC 766804 c.3435A>G synonymous_variant 0.23
rpoC 766861 c.3492G>C synonymous_variant 0.24
rpoC 766864 c.3495G>C synonymous_variant 0.24
rpoC 766894 c.3525T>C synonymous_variant 0.23
rpoC 766895 c.3526T>C synonymous_variant 0.23
rpoC 766900 c.3531T>C synonymous_variant 0.24
rpoC 766933 c.3564A>G synonymous_variant 0.18
rpoC 766972 c.3603G>C synonymous_variant 0.15
rpoC 766978 c.3609C>G synonymous_variant 0.17
rpoC 766996 c.3627C>T synonymous_variant 0.17
rpoC 767009 p.Ser1214Thr missense_variant 0.14
rpoC 767014 c.3645G>C synonymous_variant 0.14
rpoC 767033 c.3664_3666delTCGinsAGC synonymous_variant 0.19
rpoC 767059 c.3690T>G synonymous_variant 0.23
rpoC 767062 c.3693C>A synonymous_variant 0.24
rpoC 767074 c.3705T>C synonymous_variant 0.24
rpoC 767098 c.3729T>C synonymous_variant 0.23
rpoC 767119 c.3750A>G synonymous_variant 0.24
rpoC 767134 c.3765C>G synonymous_variant 0.28
rpoC 767158 c.3789T>G synonymous_variant 0.29
rpoC 767167 c.3798C>G synonymous_variant 0.27
rpoC 767180 p.Ala1271Gln missense_variant 0.26
rpoC 767191 c.3822C>G synonymous_variant 0.28
rpoC 767206 c.3837C>G synonymous_variant 0.21
rpoC 767209 c.3840T>C synonymous_variant 0.2
rpoC 767212 c.3843G>C synonymous_variant 0.21
rpoC 767221 c.3852C>G synonymous_variant 0.24
rpoC 767230 c.3861G>C synonymous_variant 0.22
rpoC 767233 c.3864T>C synonymous_variant 0.2
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776182 p.Asp767Asn missense_variant 1.0
mmpS5 779615 c.-710C>G upstream_gene_variant 0.98
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781751 c.192G>C synonymous_variant 0.15
rpsL 781754 c.195G>C synonymous_variant 0.17
rpsL 781760 c.201T>C synonymous_variant 0.17
rplC 800612 c.-197A>G upstream_gene_variant 0.25
rplC 800618 c.-191T>C upstream_gene_variant 0.22
rplC 800648 c.-161A>C upstream_gene_variant 0.21
rplC 800654 c.-155T>C upstream_gene_variant 0.2
rplC 800690 c.-119C>T upstream_gene_variant 0.24
rplC 800693 c.-116A>G upstream_gene_variant 0.25
rplC 800703 c.-106T>C upstream_gene_variant 0.22
rplC 800715 c.-94A>C upstream_gene_variant 0.18
rplC 800720 c.-89T>C upstream_gene_variant 0.18
rplC 800723 c.-86C>G upstream_gene_variant 0.18
rplC 800738 c.-71T>C upstream_gene_variant 0.17
rplC 800747 c.-62C>G upstream_gene_variant 0.19
rplC 800771 c.-38C>T upstream_gene_variant 0.18
rplC 800844 c.36T>C synonymous_variant 0.18
rplC 800877 c.69A>C synonymous_variant 0.15
rplC 800880 c.72A>G synonymous_variant 0.15
rplC 800889 c.81C>G synonymous_variant 0.18
rplC 800907 c.99C>G synonymous_variant 0.22
rplC 800916 c.108A>G synonymous_variant 0.23
rplC 800937 c.129A>G synonymous_variant 0.17
rplC 800939 p.Arg44Gln missense_variant 0.15
rplC 800955 c.147C>G synonymous_variant 0.15
rplC 800967 c.159C>G synonymous_variant 0.16
rplC 800970 c.162T>C synonymous_variant 0.15
rplC 801174 c.366T>C synonymous_variant 0.16
rplC 801222 c.414T>C synonymous_variant 0.16
rplC 801367 p.Ala187Thr missense_variant 0.14
fbiC 1303509 c.579G>C synonymous_variant 0.17
fbiC 1303512 c.582T>C synonymous_variant 0.17
fbiC 1303534 p.Ser202Ala missense_variant 0.17
fbiC 1303755 c.825T>C synonymous_variant 0.14
fbiC 1303785 c.855G>C synonymous_variant 0.19
fbiC 1303789 p.Ile287Val missense_variant 0.18
fbiC 1303818 c.888C>G synonymous_variant 0.17
fbiC 1303836 c.906G>C synonymous_variant 0.18
fbiC 1303845 c.915C>G synonymous_variant 0.18
fbiC 1303846 p.Phe306Val missense_variant 0.18
fbiC 1303854 c.924T>C synonymous_variant 0.18
fbiC 1303860 c.930A>C synonymous_variant 0.2
fbiC 1303881 c.951G>C synonymous_variant 0.16
fbiC 1303884 c.954T>G synonymous_variant 0.17
fbiC 1303911 c.981G>C synonymous_variant 0.21
fbiC 1303914 c.984C>G synonymous_variant 0.22
fbiC 1303920 c.990C>G synonymous_variant 0.23
fbiC 1303923 c.993C>T synonymous_variant 0.22
fbiC 1303929 c.999G>C synonymous_variant 0.25
fbiC 1303947 c.1017T>C synonymous_variant 0.16
fbiC 1303948 p.Gly340Arg missense_variant 0.16
fbiC 1303969 p.Val347Ile missense_variant 0.17
fbiC 1303973 p.Gly348Ala missense_variant 0.18
fbiC 1303981 p.Val351Ile missense_variant 0.16
fbiC 1303995 c.1065C>T synonymous_variant 0.17
fbiC 1304001 c.1071C>G synonymous_variant 0.17
fbiC 1304008 c.1078T>C synonymous_variant 0.18
fbiC 1304703 c.1773C>G synonymous_variant 0.17
fbiC 1304742 c.1812T>C synonymous_variant 0.17
fbiC 1304748 c.1818T>C synonymous_variant 0.18
fbiC 1304754 c.1824G>A synonymous_variant 0.19
fbiC 1304757 c.1827A>G synonymous_variant 0.19
fbiC 1304784 c.1854T>C synonymous_variant 0.19
fbiC 1304787 c.1857T>C synonymous_variant 0.18
fbiC 1304790 c.1860C>G synonymous_variant 0.19
fbiC 1304808 c.1878C>G synonymous_variant 0.16
fbiC 1304811 c.1881C>G synonymous_variant 0.18
fbiC 1304817 c.1887T>C synonymous_variant 0.2
fbiC 1304829 c.1899T>C synonymous_variant 0.21
fbiC 1304832 c.1902C>G synonymous_variant 0.21
fbiC 1304853 c.1923C>G synonymous_variant 0.19
fbiC 1304856 c.1926C>G synonymous_variant 0.19
fbiC 1304893 p.Gly655Ser missense_variant 0.15
fbiC 1304916 c.1986T>C synonymous_variant 0.14
fbiC 1304925 c.1995G>C synonymous_variant 0.16
fbiC 1304940 c.2010A>G synonymous_variant 0.17
fbiC 1304946 c.2016G>C synonymous_variant 0.2
fbiC 1304958 c.2028T>G synonymous_variant 0.21
fbiC 1304961 c.2031C>T synonymous_variant 0.2
fbiC 1304991 c.2061G>C synonymous_variant 0.19
fbiC 1304994 c.2064A>G synonymous_variant 0.19
fbiC 1304995 c.2065T>C synonymous_variant 0.19
fbiC 1305006 c.2076A>G synonymous_variant 0.18
Rv1258c 1406760 c.580_581insC frameshift_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472044 n.199G>C non_coding_transcript_exon_variant 0.16
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.17
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.17
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.17
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.15
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.14
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.14
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.13
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.17
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.17
rrl 1474823 n.1166C>T non_coding_transcript_exon_variant 0.14
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.17
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.15
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.2
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.18
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.14
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.13
rrl 1475638 n.1981C>T non_coding_transcript_exon_variant 0.14
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.17
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.16
rrl 1475659 n.2002G>T non_coding_transcript_exon_variant 0.15
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.17
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.17
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.14
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.14
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.17
inhA 1674480 c.279T>C synonymous_variant 0.15
inhA 1674507 c.306G>C synonymous_variant 0.16
inhA 1674537 c.336C>G synonymous_variant 0.15
inhA 1674542 p.Ala114Glu missense_variant 0.16
inhA 1674549 c.348G>C synonymous_variant 0.16
inhA 1674555 c.354G>A synonymous_variant 0.17
inhA 1674561 c.360C>T synonymous_variant 0.16
rpsA 1833589 c.48A>T synonymous_variant 0.14
rpsA 1833619 c.78A>C synonymous_variant 0.15
rpsA 1833661 c.120A>G synonymous_variant 0.16
rpsA 1833667 c.126C>G synonymous_variant 0.17
rpsA 1833787 c.246C>G synonymous_variant 0.21
rpsA 1833790 c.249T>A synonymous_variant 0.22
rpsA 1833799 c.258C>G synonymous_variant 0.21
rpsA 1833811 c.270G>C synonymous_variant 0.21
rpsA 1833838 c.297G>C synonymous_variant 0.19
rpsA 1833841 c.300C>G synonymous_variant 0.18
rpsA 1833847 c.306C>G synonymous_variant 0.19
rpsA 1833856 c.315A>G synonymous_variant 0.2
rpsA 1833862 c.321G>T synonymous_variant 0.2
rpsA 1833874 c.333T>C synonymous_variant 0.19
rpsA 1833928 c.387G>C synonymous_variant 0.21
rpsA 1833940 c.399C>G synonymous_variant 0.2
rpsA 1833970 c.429G>C synonymous_variant 0.22
rpsA 1833979 c.438T>C synonymous_variant 0.18
rpsA 1834000 c.459G>C synonymous_variant 0.2
rpsA 1834015 c.474G>C synonymous_variant 0.17
rpsA 1834021 c.480C>T synonymous_variant 0.17
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834201 c.660C>T synonymous_variant 0.17
rpsA 1834222 c.681T>C synonymous_variant 0.19
rpsA 1834225 c.684C>G synonymous_variant 0.18
rpsA 1834240 c.699T>C synonymous_variant 0.2
rpsA 1834249 c.708T>C synonymous_variant 0.21
rpsA 1834261 c.720A>C synonymous_variant 0.2
rpsA 1834264 c.723G>C synonymous_variant 0.19
rpsA 1834297 c.756C>G synonymous_variant 0.21
rpsA 1834303 c.762T>G synonymous_variant 0.18
rpsA 1834306 c.765T>C synonymous_variant 0.17
rpsA 1834348 c.807T>C synonymous_variant 0.23
rpsA 1834366 c.825A>G synonymous_variant 0.23
rpsA 1834375 c.834G>A synonymous_variant 0.22
rpsA 1834396 c.855G>C synonymous_variant 0.21
rpsA 1834411 c.870T>C synonymous_variant 0.2
rpsA 1834417 c.876G>C synonymous_variant 0.17
rpsA 1834423 c.882G>C synonymous_variant 0.17
rpsA 1834435 c.894G>C synonymous_variant 0.17
rpsA 1834474 c.933C>G synonymous_variant 0.14
rpsA 1834489 c.948T>C synonymous_variant 0.17
rpsA 1834498 c.957C>T synonymous_variant 0.18
rpsA 1834528 c.987T>C synonymous_variant 0.22
rpsA 1834546 c.1005T>C synonymous_variant 0.21
rpsA 1834555 c.1014T>C synonymous_variant 0.23
rpsA 1834558 c.1017C>G synonymous_variant 0.23
rpsA 1834594 c.1053C>T synonymous_variant 0.24
rpsA 1834606 c.1065C>G synonymous_variant 0.2
rpsA 1834609 c.1068T>C synonymous_variant 0.18
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102065 c.978G>C synonymous_variant 0.15
ndh 2102242 c.801G>A synonymous_variant 0.14
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2169866 c.747G>C synonymous_variant 0.31
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517947 c.-168C>T upstream_gene_variant 0.21
kasA 2517974 c.-141T>C upstream_gene_variant 0.18
kasA 2517989 c.-126T>C upstream_gene_variant 0.15
kasA 2517992 c.-123C>G upstream_gene_variant 0.15
kasA 2518540 c.426T>G synonymous_variant 0.15
kasA 2518561 c.447T>C synonymous_variant 0.15
kasA 2518609 p.Met165Ile missense_variant 0.19
kasA 2518621 c.507G>A synonymous_variant 0.19
kasA 2518642 c.528A>G synonymous_variant 0.23
kasA 2518663 c.549T>C synonymous_variant 0.23
kasA 2518672 c.558G>C synonymous_variant 0.24
kasA 2518687 c.573C>T synonymous_variant 0.21
kasA 2518696 c.582C>G synonymous_variant 0.2
kasA 2518702 c.588C>T synonymous_variant 0.17
kasA 2518711 c.597A>G synonymous_variant 0.17
kasA 2518714 c.600A>C synonymous_variant 0.17
kasA 2518732 c.618C>G synonymous_variant 0.15
kasA 2518768 c.654C>G synonymous_variant 0.16
kasA 2518783 c.669T>C synonymous_variant 0.15
kasA 2518792 c.678C>G synonymous_variant 0.16
kasA 2518795 c.681C>G synonymous_variant 0.17
kasA 2518816 c.702C>A synonymous_variant 0.19
kasA 2518822 c.708C>G synonymous_variant 0.19
kasA 2518825 c.711T>C synonymous_variant 0.19
kasA 2518855 c.741C>G synonymous_variant 0.2
kasA 2518864 c.750G>C synonymous_variant 0.18
kasA 2518879 c.765A>G synonymous_variant 0.18
kasA 2518885 c.771T>C synonymous_variant 0.15
kasA 2518888 c.774C>T synonymous_variant 0.15
folC 2747065 c.534C>G synonymous_variant 0.17
folC 2747086 c.513A>C synonymous_variant 0.17
folC 2747089 c.510G>C synonymous_variant 0.18
folC 2747098 c.501C>G synonymous_variant 0.17
folC 2747101 c.498G>C synonymous_variant 0.17
folC 2747107 c.492G>C synonymous_variant 0.17
folC 2747110 c.489T>C synonymous_variant 0.17
folC 2747113 c.486C>G synonymous_variant 0.16
folC 2747116 c.483G>C synonymous_variant 0.17
folC 2747293 c.306G>A synonymous_variant 0.14
folC 2747314 c.285A>C synonymous_variant 0.16
folC 2747317 c.282C>G synonymous_variant 0.16
folC 2747355 p.Val82Ile missense_variant 0.16
folC 2747362 c.237G>C synonymous_variant 0.15
Rv2752c 3064980 c.1212C>G synonymous_variant 0.15
Rv2752c 3064998 c.1194A>G synonymous_variant 0.15
Rv2752c 3065018 p.Asn392His missense_variant 0.16
Rv2752c 3065028 c.1164G>C synonymous_variant 0.16
Rv2752c 3065031 c.1161G>C synonymous_variant 0.15
Rv2752c 3065947 p.Gly82Ala missense_variant 0.2
Rv2752c 3065955 c.235_237delTTGinsCTC synonymous_variant 0.21
Rv2752c 3065979 c.213T>C synonymous_variant 0.19
Rv2752c 3065993 p.Val67Ile missense_variant 0.16
Rv2752c 3065994 c.198T>C synonymous_variant 0.15
Rv2752c 3065997 c.195C>G synonymous_variant 0.15
Rv2752c 3066024 c.168T>C synonymous_variant 0.15
Rv2752c 3066050 p.Leu48Met missense_variant 0.15
Rv2752c 3066054 c.138T>G synonymous_variant 0.16
Rv2752c 3066066 c.126T>C synonymous_variant 0.16
thyX 3067850 c.96A>C synonymous_variant 0.15
thyA 3073806 c.666C>G synonymous_variant 0.21
thyA 3073812 c.660C>G synonymous_variant 0.14
thyA 3073824 c.648A>C synonymous_variant 0.21
thyA 3073827 c.645A>G synonymous_variant 0.22
thyA 3073839 c.633T>C synonymous_variant 0.25
thyA 3073872 p.Ile200Val missense_variant 0.31
thyA 3073878 c.594G>A synonymous_variant 0.3
thyA 3073892 c.580T>C synonymous_variant 0.26
thyA 3073893 c.579C>G synonymous_variant 0.26
thyA 3073925 c.547T>C synonymous_variant 0.2
thyA 3073926 c.546G>C synonymous_variant 0.2
thyA 3073929 c.543T>C synonymous_variant 0.2
thyA 3073953 c.519T>C synonymous_variant 0.2
thyA 3073977 c.495A>G synonymous_variant 0.2
thyA 3073989 c.483T>C synonymous_variant 0.2
thyA 3074001 c.471C>G synonymous_variant 0.19
thyA 3074004 c.468T>C synonymous_variant 0.18
thyA 3074010 c.462C>A synonymous_variant 0.22
thyA 3074031 c.441T>C synonymous_variant 0.2
thyA 3074037 c.435C>G synonymous_variant 0.19
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 0.99
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
fbiA 3641332 p.Gly264Arg missense_variant 0.97
rpoA 3877553 p.Glu319Gln missense_variant 0.16
rpoA 3877557 c.951C>G synonymous_variant 0.17
rpoA 3877587 c.921A>G synonymous_variant 0.24
rpoA 3877613 p.Ile299Val missense_variant 0.23
rpoA 3877638 c.870T>C synonymous_variant 0.18
rpoA 3877656 c.852T>C synonymous_variant 0.2
rpoA 3877692 c.816G>C synonymous_variant 0.15
rpoA 3877704 c.804G>T synonymous_variant 0.17
rpoA 3877743 c.765T>C synonymous_variant 0.2
rpoA 3877764 c.744C>G synonymous_variant 0.21
rpoA 3877770 c.738A>G synonymous_variant 0.21
rpoA 3877776 c.732T>C synonymous_variant 0.23
rpoA 3877782 c.726T>C synonymous_variant 0.23
rpoA 3877818 c.690A>G synonymous_variant 0.22
rpoA 3877839 c.669G>C synonymous_variant 0.16
rpoA 3877857 c.651G>A synonymous_variant 0.2
rpoA 3877866 c.642G>C synonymous_variant 0.2
rpoA 3877872 c.636C>T synonymous_variant 0.2
rpoA 3877875 c.633T>G synonymous_variant 0.18
rpoA 3877899 p.Ser203Thr missense_variant 0.15
rpoA 3877905 c.603A>G synonymous_variant 0.14
rpoA 3878070 c.438T>C synonymous_variant 0.15
rpoA 3878094 c.414C>G synonymous_variant 0.16
rpoA 3878106 c.402G>C synonymous_variant 0.16
rpoA 3878118 c.390T>C synonymous_variant 0.18
rpoA 3878141 p.Met123Leu missense_variant 0.19
rpoA 3878142 p.Gly122Glu missense_variant 0.19
rpoA 3878169 c.339G>C synonymous_variant 0.19
rpoA 3878217 c.291A>G synonymous_variant 0.15
rpoA 3878220 c.288C>T synonymous_variant 0.14
rpoA 3878271 c.237T>C synonymous_variant 0.15
rpoA 3878284 p.Glu75Ala missense_variant 0.16
rpoA 3878292 c.216T>C synonymous_variant 0.16
rpoA 3878298 c.210A>G synonymous_variant 0.17
rpoA 3878304 c.204G>C synonymous_variant 0.15
rpoA 3878331 c.177A>G synonymous_variant 0.15
rpoA 3878334 c.174T>C synonymous_variant 0.15
rpoA 3878337 c.171T>C synonymous_variant 0.15
rpoA 3878346 c.162T>C synonymous_variant 0.17
rpoA 3878385 c.123C>G synonymous_variant 0.14
rpoA 3878391 c.117T>C synonymous_variant 0.15
rpoA 3878396 c.112C>T synonymous_variant 0.15
rpoA 3878436 c.72A>G synonymous_variant 0.17
rpoA 3878442 c.66G>C synonymous_variant 0.16
rpoA 3878698 c.-191A>G upstream_gene_variant 0.16
rpoA 3878701 c.-194C>G upstream_gene_variant 0.16
ddn 3986648 c.-196C>G upstream_gene_variant 0.16
ddn 3986655 c.-189A>T upstream_gene_variant 0.15
clpC1 4038244 p.Thr821Ala missense_variant 0.15
clpC1 4038310 p.Val799Met missense_variant 0.14
clpC1 4038347 c.2358G>C synonymous_variant 0.16
clpC1 4038356 c.2349T>C synonymous_variant 0.15
clpC1 4038359 c.2346A>G synonymous_variant 0.15
clpC1 4038368 c.2337T>C synonymous_variant 0.15
clpC1 4038398 c.2307G>T synonymous_variant 0.16
clpC1 4038403 c.2302T>C synonymous_variant 0.16
clpC1 4038434 c.2271G>C synonymous_variant 0.15
clpC1 4038445 p.Ala754Thr missense_variant 0.13
clpC1 4038452 c.2253G>C synonymous_variant 0.15
clpC1 4038461 p.Ala748Asp missense_variant 0.15
clpC1 4038498 p.Ser736Thr missense_variant 0.17
clpC1 4038530 p.Glu725Asp missense_variant 0.18
clpC1 4038536 c.2169C>T synonymous_variant 0.19
clpC1 4038596 c.2109A>G synonymous_variant 0.17
clpC1 4038623 c.2082A>G synonymous_variant 0.16
clpC1 4038640 p.Asp689Asn missense_variant 0.15
clpC1 4038671 c.2034T>C synonymous_variant 0.14
clpC1 4038695 c.2010C>G synonymous_variant 0.14
clpC1 4038740 c.1965G>C synonymous_variant 0.16
clpC1 4038755 c.1950G>C synonymous_variant 0.21
clpC1 4038773 c.1932T>C synonymous_variant 0.2
clpC1 4038782 c.1923G>C synonymous_variant 0.21
clpC1 4038790 c.1915C>T synonymous_variant 0.18
clpC1 4038812 c.1893T>C synonymous_variant 0.17
clpC1 4038815 c.1890G>T synonymous_variant 0.18
clpC1 4038953 c.1752A>G synonymous_variant 0.17
clpC1 4038956 c.1749T>C synonymous_variant 0.17
clpC1 4038965 c.1740T>C synonymous_variant 0.2
clpC1 4038971 c.1734T>C synonymous_variant 0.2
clpC1 4038974 c.1731T>C synonymous_variant 0.2
clpC1 4038989 c.1716T>C synonymous_variant 0.22
clpC1 4038997 c.1708T>C synonymous_variant 0.21
clpC1 4039022 c.1683A>G synonymous_variant 0.22
clpC1 4039073 c.1632C>G synonymous_variant 0.22
clpC1 4039085 c.1620A>G synonymous_variant 0.2
clpC1 4039090 c.1615C>T synonymous_variant 0.18
clpC1 4039097 c.1608G>C synonymous_variant 0.17
clpC1 4039103 c.1602T>C synonymous_variant 0.17
clpC1 4039106 c.1599G>C synonymous_variant 0.17
clpC1 4039112 c.1593C>G synonymous_variant 0.18
clpC1 4039127 c.1578G>A synonymous_variant 0.14
clpC1 4039142 c.1563A>G synonymous_variant 0.15
clpC1 4039145 c.1560G>C synonymous_variant 0.16
clpC1 4039169 p.Glu512Asp missense_variant 0.17
clpC1 4039172 c.1533A>G synonymous_variant 0.17
clpC1 4039178 c.1527G>C synonymous_variant 0.17
clpC1 4039183 c.1522T>C synonymous_variant 0.17
clpC1 4039187 c.1518G>C synonymous_variant 0.17
clpC1 4039190 c.1515C>G synonymous_variant 0.17
clpC1 4039208 c.1497C>G synonymous_variant 0.19
clpC1 4039226 c.1479T>C synonymous_variant 0.2
clpC1 4039268 c.1437C>G synonymous_variant 0.16
clpC1 4039274 c.1431G>C synonymous_variant 0.18
clpC1 4039286 c.1419T>C synonymous_variant 0.18
clpC1 4039289 c.1416T>C synonymous_variant 0.18
clpC1 4039295 c.1410A>C synonymous_variant 0.18
clpC1 4039298 c.1407T>C synonymous_variant 0.18
clpC1 4039319 c.1386T>C synonymous_variant 0.21
clpC1 4039322 c.1383T>C synonymous_variant 0.2
clpC1 4039328 c.1377A>G synonymous_variant 0.19
clpC1 4039334 c.1371G>C synonymous_variant 0.2
clpC1 4039337 p.Thr456Gln missense_variant 0.21
clpC1 4039364 c.1341C>G synonymous_variant 0.25
clpC1 4039388 c.1317C>A synonymous_variant 0.23
clpC1 4039391 c.1314T>G synonymous_variant 0.23
clpC1 4039409 c.1296T>C synonymous_variant 0.17
clpC1 4039412 c.1293T>G synonymous_variant 0.17
clpC1 4039430 c.1275T>C synonymous_variant 0.24
clpC1 4039442 c.1263A>G synonymous_variant 0.23
clpC1 4039448 c.1257A>G synonymous_variant 0.25
clpC1 4039454 c.1251A>G synonymous_variant 0.25
clpC1 4039463 c.1242C>G synonymous_variant 0.2
clpC1 4039466 c.1239T>C synonymous_variant 0.19
clpC1 4039469 c.1236T>C synonymous_variant 0.19
clpC1 4039481 c.1224T>G synonymous_variant 0.2
clpC1 4039484 c.1221T>G synonymous_variant 0.29
clpC1 4039493 c.1212C>T synonymous_variant 0.26
clpC1 4039517 c.1188C>G synonymous_variant 0.24
clpC1 4039524 p.Phe394Tyr missense_variant 0.2
clpC1 4039526 c.1179G>C synonymous_variant 0.18
clpC1 4039532 c.1173C>T synonymous_variant 0.2
clpC1 4039547 c.1158C>G synonymous_variant 0.22
clpC1 4039553 c.1152C>G synonymous_variant 0.23
clpC1 4039562 c.1143C>G synonymous_variant 0.26
clpC1 4039576 p.Ala377Ser missense_variant 0.27
clpC1 4039577 c.1128T>C synonymous_variant 0.27
clpC1 4039586 c.1119G>C synonymous_variant 0.26
clpC1 4039610 c.1095G>C synonymous_variant 0.27
clpC1 4039616 c.1089G>C synonymous_variant 0.26
clpC1 4039622 c.1083C>G synonymous_variant 0.26
clpC1 4039682 c.1023C>G synonymous_variant 0.21
clpC1 4039685 c.1020C>T synonymous_variant 0.23
clpC1 4039724 c.981A>G synonymous_variant 0.22
clpC1 4039850 c.855T>C synonymous_variant 0.16
clpC1 4039865 c.840T>C synonymous_variant 0.16
clpC1 4039898 c.807C>G synonymous_variant 0.16
clpC1 4039946 c.759A>T synonymous_variant 0.17
clpC1 4039952 c.753T>C synonymous_variant 0.17
clpC1 4039958 c.747G>C synonymous_variant 0.18
clpC1 4039979 c.726C>G synonymous_variant 0.19
clpC1 4039996 p.Glu237Gln missense_variant 0.23
clpC1 4040021 c.684A>C synonymous_variant 0.2
clpC1 4040024 c.681A>G synonymous_variant 0.2
clpC1 4040033 c.672G>C synonymous_variant 0.19
clpC1 4040036 c.669C>G synonymous_variant 0.2
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.17
clpC1 4040093 c.612C>G synonymous_variant 0.16
clpC1 4040105 c.600C>G synonymous_variant 0.21
clpC1 4040147 c.558A>G synonymous_variant 0.16
clpC1 4040153 c.552A>G synonymous_variant 0.16
clpC1 4040237 c.468C>T synonymous_variant 0.14
clpC1 4040249 c.456A>G synonymous_variant 0.22
clpC1 4040264 c.441C>T synonymous_variant 0.24
clpC1 4040267 c.438A>G synonymous_variant 0.23
clpC1 4040273 c.432T>C synonymous_variant 0.25
clpC1 4040354 c.351A>G synonymous_variant 0.23
clpC1 4040363 c.342A>C synonymous_variant 0.22
clpC1 4040369 c.336C>G synonymous_variant 0.2
clpC1 4040380 c.325T>C synonymous_variant 0.16
clpC1 4040411 c.294T>C synonymous_variant 0.18
clpC1 4040423 c.282A>G synonymous_variant 0.16
clpC1 4040426 c.279T>C synonymous_variant 0.16
clpC1 4040444 c.261C>G synonymous_variant 0.16
clpC1 4040459 c.246C>G synonymous_variant 0.16
clpC1 4040465 c.240T>C synonymous_variant 0.17
clpC1 4040471 c.234T>C synonymous_variant 0.19
clpC1 4040477 c.228G>A synonymous_variant 0.18
clpC1 4040480 c.225T>C synonymous_variant 0.18
embC 4240183 c.321A>G synonymous_variant 0.15
embC 4240210 c.348C>G synonymous_variant 0.15
embC 4240514 p.Val218Met missense_variant 0.14
embC 4240543 c.681G>C synonymous_variant 0.18
embC 4240561 c.699C>G synonymous_variant 0.15
embC 4240600 c.738G>C synonymous_variant 0.18
embC 4240654 c.792C>T synonymous_variant 0.13
embC 4240671 p.Thr270Ile missense_variant 0.18
embC 4240678 c.816T>G synonymous_variant 0.19
embC 4240685 p.Thr275Ala missense_variant 0.19
embC 4240693 c.831T>C synonymous_variant 0.2
embC 4240706 p.Val282Thr missense_variant 0.21
embC 4240726 c.864G>C synonymous_variant 0.22
embC 4240780 c.918T>C synonymous_variant 0.26
embC 4240783 c.921G>C synonymous_variant 0.25
embC 4240789 c.927T>C synonymous_variant 0.27
embC 4240819 c.957A>G synonymous_variant 0.24
embC 4240831 c.969T>G synonymous_variant 0.26
embC 4240867 c.1005T>G synonymous_variant 0.24
embC 4240870 c.1008T>C synonymous_variant 0.23
embC 4240879 c.1017G>C synonymous_variant 0.21
embC 4240880 p.Ala340Thr missense_variant 0.22
embC 4240885 c.1023T>C synonymous_variant 0.22
embC 4240897 c.1035C>G synonymous_variant 0.21
embC 4240900 c.1038A>G synonymous_variant 0.21
embC 4240919 c.1057_1059delCTCinsTTG synonymous_variant 0.16
embC 4241017 c.1155T>C synonymous_variant 0.17
embC 4241023 c.1161T>G synonymous_variant 0.16
embC 4241026 c.1164C>G synonymous_variant 0.17
embC 4241035 c.1173G>A synonymous_variant 0.18
embC 4241104 c.1242G>A synonymous_variant 0.17
embC 4241107 c.1245G>C synonymous_variant 0.16
embC 4241137 c.1275G>C synonymous_variant 0.17
embC 4241140 c.1278A>G synonymous_variant 0.16
embC 4241141 p.Ile427Val missense_variant 0.17
embC 4241158 c.1296T>C synonymous_variant 0.17
embC 4241161 c.1299C>G synonymous_variant 0.15
embC 4241162 c.1300T>C synonymous_variant 0.15
embC 4241443 c.1581C>G synonymous_variant 0.15
embC 4242425 p.Arg855Gly missense_variant 0.36
embA 4242643 c.-590C>T upstream_gene_variant 0.99
embA 4243460 c.228C>T synonymous_variant 1.0
embA 4245089 c.1857G>C synonymous_variant 0.14
embA 4245092 c.1860C>G synonymous_variant 0.15
embA 4245101 c.1869G>C synonymous_variant 0.18
embA 4245137 c.1905T>C synonymous_variant 0.22
embA 4245149 c.1917C>G synonymous_variant 0.23
embA 4245182 c.1950T>C synonymous_variant 0.18
embA 4245194 c.1962G>C synonymous_variant 0.16
embA 4245198 p.Leu656Ile missense_variant 0.13
embA 4246329 p.Thr1033Leu missense_variant 0.18
embB 4246355 c.-159G>C upstream_gene_variant 0.24
embA 4246359 p.Ala1043Pro missense_variant 0.22
embB 4246364 c.-150G>C upstream_gene_variant 0.21
embB 4246367 c.-147C>T upstream_gene_variant 0.2
embB 4246373 c.-141T>C upstream_gene_variant 0.2
embB 4246376 c.-138G>C upstream_gene_variant 0.21
embB 4247348 p.Thr279Ala missense_variant 0.14
embB 4247355 p.Ala281Val missense_variant 0.15
embB 4247358 p.Val282Ala missense_variant 0.16
embB 4247365 c.852A>C synonymous_variant 0.18
embB 4247371 c.858C>G synonymous_variant 0.19
embB 4247375 p.Leu288Val missense_variant 0.2
embB 4247386 c.873T>C synonymous_variant 0.21
embB 4247389 c.876C>G synonymous_variant 0.22
embB 4247395 c.882C>G synonymous_variant 0.25
embB 4247401 c.888T>C synonymous_variant 0.27
embB 4247437 c.924A>G synonymous_variant 0.24
embB 4247440 c.927C>G synonymous_variant 0.24
embB 4247464 c.951C>G synonymous_variant 0.21
embB 4247470 c.957T>C synonymous_variant 0.21
embB 4247491 c.978G>C synonymous_variant 0.18
embB 4247500 c.987C>G synonymous_variant 0.16
embB 4247512 c.999T>C synonymous_variant 0.16
embB 4247536 c.1023C>G synonymous_variant 0.17
embB 4247830 c.1317A>C synonymous_variant 0.16
embB 4247836 c.1323A>G synonymous_variant 0.16
embB 4247842 c.1329T>C synonymous_variant 0.16
embB 4248118 c.1605T>C synonymous_variant 0.16
embB 4248127 c.1614G>C synonymous_variant 0.16
embB 4248133 c.1620C>G synonymous_variant 0.18
embB 4248142 c.1629T>C synonymous_variant 0.17
embB 4248143 c.1630T>C synonymous_variant 0.16
embB 4248157 c.1644A>G synonymous_variant 0.18
embB 4248206 p.Ser565Gly missense_variant 0.23
embB 4248220 c.1707A>G synonymous_variant 0.28
embB 4248241 c.1728C>T synonymous_variant 0.32
embB 4248265 c.1752C>T synonymous_variant 0.24
embB 4248266 c.1753C>T synonymous_variant 0.24
embB 4248277 c.1764G>C synonymous_variant 0.23
embB 4248298 c.1785C>T synonymous_variant 0.15
embB 4248304 c.1791G>C synonymous_variant 0.15
aftB 4267647 p.Asp397Gly missense_variant 0.89
ubiA 4269001 p.Ala278Val missense_variant 0.17
aftB 4269006 c.-170T>C upstream_gene_variant 0.16
aftB 4269009 c.-173A>G upstream_gene_variant 0.16
aftB 4269012 c.-176G>C upstream_gene_variant 0.16
aftB 4269033 c.-197T>C upstream_gene_variant 0.18
aftB 4269036 c.-200C>G upstream_gene_variant 0.18
aftB 4269042 c.-206G>C upstream_gene_variant 0.18
aftB 4269183 c.-347T>C upstream_gene_variant 0.22
aftB 4269201 c.-365A>G upstream_gene_variant 0.22
ubiA 4269209 p.Ser209Ala missense_variant 0.22
ubiA 4269220 p.Ala205Lys missense_variant 0.2
aftB 4269222 c.-386T>G upstream_gene_variant 0.19
aftB 4269225 c.-389C>G upstream_gene_variant 0.19
aftB 4269231 c.-395C>G upstream_gene_variant 0.19
aftB 4269234 c.-398A>G upstream_gene_variant 0.19
ubiA 4269243 p.His197Gln missense_variant 0.18
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0