Rv0005 - c.1642T>C


Drug resistance types
7 Sensitive 31 RR-TB 61 HR-TB 98 MDR-TB 4 Pre-XDR-TB 2 XDR-TB 40 Other
lineage Counts
lineage Count
lineage3 2
La3;lineage4.3.4 1
M.canetti;lineage4.3.1;lineage4.9 1
lineage2.1;lineage4.3.2;lineage4.9 1
lineage4.9 60
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
M.canetti;lineage2.1;lineage4.9 24
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
lineage2.2 2
lineage4.1;lineage4.8 2
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 5
La1.7;lineage4.9 2
lineage4.4.1.1 1
La3;M.canetti;lineage2.1;lineage4.9 12
lineage4.9;lineage7 3
M.canetti;lineage2.1 1
lineage2.2.1 5
La1.7.1 2
M.canetti;lineage2.1;lineage3 1
lineage4.3.3 2
lineage4.6.3;lineage4.9 1
La3;M.canetti;lineage4.9 2
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
lineage2.1;lineage4.9 7
M.canetti;lineage2.2 3
La1.7;M.canetti;lineage4.9 1
La3;lineage2.1;lineage4.9 1
lineage4.1.2.1 7
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
lineage1.1.1 3
La1.8.1 2
La3;lineage4.9 5
La1.7.1;La1.7.X-unk4 1
lineage4 3
M.canetti;lineage1 1
lineage4.3.2.1 1
lineage2.1;lineage4.1.1.1;lineage6.3 2
lineage4.1.1.3 1
M.canetti;lineage2.1;lineage4.1.2.1 1
M.canetti;lineage2.1;lineage6.3 1
lineage4.3.4.1 3
lineage5.2 2
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
La1.7;lineage4.2 1
lineage4.6.3;lineage4.9;lineage6.3 1
lineage1.1.2 2
4
lineage1.1.2;lineage4 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
La2;lineage2.2 1
lineage2.2.2 1
La3;M.canetti;lineage2.1;lineage3.1 1
lineage2.2.1.1 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La1.6;La3;lineage4.9 1
M.canetti;lineage4.9 1
La1.6;La3;lineage4.6.4;lineage4.9 1
lineage4.8 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
La2;lineage4.9 1
M.canetti;lineage2.2.2;lineage6.2 2
La3;M.canetti;lineage4.8;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
lineage4.6.2.2 2
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3 2
lineage2.1;lineage4.3.2 1
lineage4.9;lineage9 1
lineage4.4.1.2 1
lineage1.2.1.2.1 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
lineage1.1 1
La3;M.canetti;lineage3.1 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
M.canetti;lineage4.9;lineage9 1
lineage2.1;lineage4.9;lineage7 1
lineage2.1;lineage2.2;lineage6.3 1
M.canetti;lineage2.1;lineage4 1
La1.7.X-unk4;lineage4.9 1
lineage4.1.2 1
lineage4.3.4.2.1 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
spoligotype Counts
spoligotype Count
None 243
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4816470 HR-TB lineage3 None
ERR161039 HR-TB La3;lineage4.3.4 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
SRR3675582 Other lineage4.9 None
ERR5311096 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR1063849 HR-TB lineage4.9 None
ERR1873393 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR4799513 HR-TB lineage2.2 None
ERR9786525 RR-TB lineage4.1;lineage4.8 None
ERR2229143 RR-TB lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR5341453 Other lineage4.9 None
ERR8665994 RR-TB lineage4.9 None
SRR1173767 MDR-TB lineage4.4.1.1 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4816656 Other lineage4.9 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR323041 MDR-TB M.canetti;lineage2.1 None
SRR1180137 RR-TB lineage2.2.1 None
ERR4769452 Other lineage4.9 None
SRR12416840 MDR-TB lineage4.9 None
ERR3468607 RR-TB lineage4.9 None
SRR3675515 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045952 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR736834 HR-TB lineage4.9 None
ERR6359082 Other lineage4.9 None
SRR7240492 MDR-TB La1.7.1 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
ERR161037 HR-TB lineage4.9 None
ERR9119096 RR-TB lineage4.3.3 None
SRR3675554 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
ERR6866807 RR-TB lineage4.9 None
ERR137286 Other lineage4.9 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
SRR6325445 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR176766 MDR-TB lineage2.1;lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR5341330 Other lineage4.9 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
SRR6046046 Other lineage4.9 None
ERR4798099 HR-TB lineage4.9 None
SRR1167055 Other lineage4.1.2.1 None
ERR4818929 HR-TB lineage4.9 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR3283055 HR-TB lineage4.9 None
ERR4821053 RR-TB lineage3 None
SRR3675558 MDR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR3675561 RR-TB M.canetti;lineage2.1;lineage4.9 None
ERR10680016 MDR-TB lineage1.1.1 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
ERR387051 RR-TB lineage4.9 None
SRR6325448 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675444 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311089 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797016 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675506 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR14782054 Other lineage4.9 None
ERR3797023 MDR-TB La1.8.1 None
SRR5341384 HR-TB lineage4.9 None
ERR3283016 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797014 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR176643 Other La3;lineage4.9 None
SRR6046593 Other lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR7496471 Sensitive lineage4 None
SRR15014655 Other M.canetti;lineage1 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR323058 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR6046382 RR-TB lineage2.2.1 None
ERR4816551 MDR-TB lineage4.1.1.3 None
SRR1166821 RR-TB lineage4.1.2.1 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4815441 HR-TB lineage4.9 None
ERR1035122 HR-TB lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR3445502 HR-TB lineage4.9;lineage7 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR126600 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323037 Other lineage4.9 None
ERR176751 HR-TB lineage4.9 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4817731 HR-TB lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR13583478 HR-TB lineage4.3.4.1 None
ERR9119500 MDR-TB lineage5.2 None
SRR1165628 Other La3;lineage4.9 None
SRR3675450 MDR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
ERR10680103 MDR-TB lineage1.1.1 None
ERR4188350 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2509673 Other lineage2.2.1 None
ERR126608 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR23961559 Other La1.7;lineage4.2 None
ERR5908228 RR-TB lineage4.3.3 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR4819422 HR-TB lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR11662690 HR-TB lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
ERR4818716 Sensitive lineage1.1.2 gb
ERR1063896 HR-TB None
ERR212001 HR-TB None
ERR323040 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR278594 MDR-TB lineage2.1;lineage4.9 None
ERR4817692 MDR-TB lineage1.1.2;lineage4 None
SRR6046611 Sensitive lineage4.9 None
ERR4797264 HR-TB lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
SRR1165506 Other lineage4.1.2.1 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
SRR3675322 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR18910194 HR-TB lineage2.2.2 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
SRR6079962 HR-TB lineage2.2.1.1 None
ERR124652 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4820773 HR-TB lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR5311098 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1167384 Other La3;lineage4.9 None
ERR3797061 Other La1.6;La3;lineage4.9 None
SRR3675487 MDR-TB M.canetti;lineage4.9 None
ERR2693231 HR-TB La1.6;La3;lineage4.6.4;lineage4.9 None
SRR6045548 Other lineage4.9 None
ERR4799025 Other lineage4.8 None
SRR6046644 MDR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR1063857 MDR-TB La2;lineage4.9 None
SRR13861381 HR-TB lineage4.9 None
ERR323047 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323060 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675495 RR-TB lineage2.1;lineage4.9 None
ERR736837 Pre-XDR-TB lineage4.9 None
ERR9786526 Other lineage4.1;lineage4.8 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR4769521 RR-TB lineage4.9 None
ERR176658 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR6326069 Pre-XDR-TB lineage4.3.4.1 None
ERR6359066 HR-TB lineage4.9 None
ERR038268 MDR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675486 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
ERR11049496 Other lineage1.1.2 None
ERR4872094 MDR-TB lineage5.2 None
ERR5917710 RR-TB lineage4.1.2.1 None
ERR323036 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6458421 MDR-TB lineage2.2.1 None
ERR323062 HR-TB lineage4.9 None
SRR6325442 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR181744 HR-TB La3;lineage4.9 None
ERR6358837 MDR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR4796254 Other lineage4.9 None
ERR4819877 HR-TB lineage4.9 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4596910 Sensitive lineage4.9 None
ERR3468544 RR-TB lineage2.1;lineage4.9 None
ERR4816478 HR-TB lineage4 None
ERR4769444 HR-TB lineage4.9 None
SRR6044815 RR-TB lineage4.9 None
SRR14782405 HR-TB lineage4.9 None
ERR2693257 HR-TB La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
SRR1162864 MDR-TB lineage4.1.2.1 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
ERR3797046 HR-TB lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR11465352 Sensitive lineage4.3.4.1 None
SAMN02414850 Other lineage4.1.2.1 None
ERR4769450 Other lineage4.9 None
ERR323056 HR-TB lineage4.4.1.2 None
SRR1510066 RR-TB lineage1.2.1.2.1 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4817915 Other lineage4.9 None
SRR3675243 MDR-TB lineage4.9 None
ERR5311083 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3077978 RR-TB lineage1.1 None
ERR4819241 Other lineage4.9 None
ERR473314 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
SRR3675464 MDR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR1165584 Other lineage4.1.2.1 None
ERR323038 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675568 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
SRR6045053 Other lineage4 None
ERR9786843 Other None
SRR1640750 RR-TB None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675555 MDR-TB lineage2.1;lineage4.9;lineage7 None
SRR6046385 Sensitive lineage4.9 None
SRR3675507 RR-TB lineage4.9 None
ERR8976043 MDR-TB lineage2.1;lineage2.2;lineage6.3 None
SRR3675539 MDR-TB lineage4.9;lineage7 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
ERR3797083 RR-TB lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
SRR9970980 HR-TB lineage4.1.2 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR6866639 HR-TB lineage4.9 None
ERR323063 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR11465628 Sensitive lineage4.3.4.2.1 None
SRR1791696 RR-TB La1.8.1 None
ERR3283024 HR-TB La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
SRR3675545 RR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR10680024 MDR-TB lineage1.1.1 None
ERR1063855 Other lineage4.9 None
SRR1169306 Other La3;lineage4.9 None
ERR386953 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323066 HR-TB lineage4.9 None
ERR9119525 MDR-TB lineage4.6.2.2 None