TB-Profiler result

Run: ERR4816470
Summary

Run ID: ERR4816470

Sample name:

Date: 01-04-2023 14:26:48

Number of reads: 564431

Percentage reads mapped: 22.31

Strain: lineage3

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage3 East-African-Indian CAS RD750 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
embB 4247368 p.Phe285Leu missense_variant 0.2 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6160 c.921C>G synonymous_variant 0.2
gyrB 6181 c.942C>T synonymous_variant 0.17
gyrB 6193 c.954G>A synonymous_variant 0.17
gyrA 6724 c.-578G>C upstream_gene_variant 0.35
gyrA 6727 c.-575G>C upstream_gene_variant 0.37
gyrA 6730 c.-572A>C upstream_gene_variant 0.43
gyrA 6742 c.-560A>G upstream_gene_variant 0.54
gyrA 6745 c.-557T>C upstream_gene_variant 0.54
gyrB 6749 p.Ala504Ser missense_variant 0.52
gyrA 6763 c.-539G>A upstream_gene_variant 0.53
gyrB 6764 p.Leu509Phe missense_variant 0.53
gyrA 6775 c.-527G>C upstream_gene_variant 0.59
gyrA 6778 c.-524C>T upstream_gene_variant 0.61
gyrA 6793 c.-509T>C upstream_gene_variant 0.63
gyrB 6794 p.Ile519Leu missense_variant 0.63
gyrB 6798 p.Gly520Ala missense_variant 0.67
gyrA 6811 c.-491C>T upstream_gene_variant 0.67
gyrA 6841 c.-461T>C upstream_gene_variant 0.71
gyrA 6856 c.-446T>C upstream_gene_variant 0.72
gyrA 6862 c.-440C>G upstream_gene_variant 0.69
gyrA 6869 c.-433T>C upstream_gene_variant 0.68
gyrA 6872 c.-430T>C upstream_gene_variant 0.63
gyrA 6881 c.-421T>C upstream_gene_variant 0.57
gyrA 6889 c.-413G>C upstream_gene_variant 0.59
gyrB 6896 p.Arg553Lys missense_variant 0.6
gyrA 6904 c.-398C>G upstream_gene_variant 0.63
gyrA 6916 c.-386G>T upstream_gene_variant 0.56
gyrA 6919 c.-383T>C upstream_gene_variant 0.56
gyrA 6922 c.-380G>C upstream_gene_variant 0.47
gyrB 6924 p.Phe562Tyr missense_variant 0.44
gyrA 6926 c.-376T>C upstream_gene_variant 0.44
gyrA 6934 c.-368A>G upstream_gene_variant 0.38
gyrA 6949 c.-353A>G upstream_gene_variant 0.3
gyrA 7120 c.-182T>C upstream_gene_variant 0.18
gyrA 7340 p.Asp13Glu missense_variant 0.4
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 759746 c.-61C>T upstream_gene_variant 1.0
rpoB 760064 c.258G>A synonymous_variant 0.2
rpoB 760070 c.264T>G synonymous_variant 0.28
rpoB 760088 c.282C>G synonymous_variant 0.46
rpoB 760091 c.285G>T synonymous_variant 0.46
rpoB 760101 c.295_297delTTGinsCTT synonymous_variant 0.44
rpoB 760106 c.300G>C synonymous_variant 0.42
rpoB 760112 c.306T>C synonymous_variant 0.48
rpoB 760120 p.Arg105His missense_variant 0.5
rpoB 760130 p.Asp108Glu missense_variant 0.6
rpoB 760139 c.333A>C synonymous_variant 0.6
rpoB 760140 p.Pro112Ser missense_variant 0.59
rpoB 760148 p.Asp114Glu missense_variant 0.62
rpoB 760172 c.366G>C synonymous_variant 0.7
rpoB 760181 c.375T>G synonymous_variant 0.69
rpoB 760184 c.378A>C synonymous_variant 0.7
rpoB 760199 c.393C>G synonymous_variant 0.69
rpoB 760233 c.427_429delAGTinsTCG synonymous_variant 0.6
rpoB 760241 c.435G>C synonymous_variant 0.59
rpoB 760244 c.438G>C synonymous_variant 0.57
rpoB 760253 c.447T>C synonymous_variant 0.56
rpoB 760265 p.Met153Ile missense_variant 0.56
rpoB 760274 p.Glu156Asp missense_variant 0.54
rpoB 760282 p.Thr159Ser missense_variant 0.44
rpoB 760298 c.492G>C synonymous_variant 0.33
rpoB 760361 c.555T>C synonymous_variant 0.29
rpoB 760368 p.Ser188Ala missense_variant 0.35
rpoB 760376 p.Asp190Glu missense_variant 0.36
rpoB 760382 c.576G>C synonymous_variant 0.42
rpoB 760385 c.579G>C synonymous_variant 0.42
rpoB 760390 p.Ser195Thr missense_variant 0.46
rpoB 760394 c.588C>G synonymous_variant 0.5
rpoB 760400 c.594G>C synonymous_variant 0.54
rpoB 760407 p.Ser201Gly missense_variant 0.58
rpoB 760412 c.606C>T synonymous_variant 0.58
rpoB 760418 c.612G>A synonymous_variant 0.57
rpoB 760424 c.618C>G synonymous_variant 0.57
rpoB 760427 c.621G>A synonymous_variant 0.57
rpoB 760430 c.624T>C synonymous_variant 0.62
rpoB 760457 c.651C>T synonymous_variant 0.72
rpoB 760475 c.669A>G synonymous_variant 0.62
rpoB 760478 c.672C>T synonymous_variant 0.6
rpoB 760481 c.675G>A synonymous_variant 0.56
rpoB 760484 c.678A>G synonymous_variant 0.58
rpoB 760502 c.696C>G synonymous_variant 0.54
rpoB 760508 c.702G>T synonymous_variant 0.48
rpoB 760511 c.705G>C synonymous_variant 0.47
rpoB 760520 c.714C>G synonymous_variant 0.36
rpoB 760522 p.Ser239Asn missense_variant 0.37
rpoB 760526 c.720G>A synonymous_variant 0.37
rpoB 760527 p.Gln241Glu missense_variant 0.37
rpoB 760532 c.726T>C synonymous_variant 0.4
rpoB 760533 p.Val243Ser missense_variant 0.4
rpoB 760541 c.735G>T synonymous_variant 0.4
rpoB 760563 p.Arg253Met missense_variant 0.39
rpoB 760571 c.765G>C synonymous_variant 0.41
rpoB 760591 p.Val262Ala missense_variant 0.22
rpoB 760611 c.805_807delTTGinsCTC synonymous_variant 0.24
rpoB 760616 p.Asp270Glu missense_variant 0.23
rpoB 760617 p.Ile271Val missense_variant 0.23
rpoB 760916 c.1110C>T synonymous_variant 0.64
rpoB 760919 c.1113C>T synonymous_variant 0.61
rpoB 760925 c.1119T>C synonymous_variant 0.61
rpoB 760928 c.1122G>C synonymous_variant 0.58
rpoB 760940 c.1134G>C synonymous_variant 0.63
rpoB 760946 c.1140A>G synonymous_variant 0.63
rpoB 760958 c.1152G>T synonymous_variant 0.65
rpoB 760964 c.1158C>A synonymous_variant 0.65
rpoB 760965 p.Met387Leu missense_variant 0.65
rpoB 760973 c.1167G>T synonymous_variant 0.65
rpoB 760982 c.1176G>C synonymous_variant 0.65
rpoB 760985 c.1179G>C synonymous_variant 0.65
rpoB 760988 c.1182C>G synonymous_variant 0.65
rpoB 760991 c.1185G>T synonymous_variant 0.65
rpoB 760997 c.1191G>C synonymous_variant 0.63
rpoB 761003 c.1197C>G synonymous_variant 0.57
rpoB 761015 c.1209G>C synonymous_variant 0.59
rpoB 761027 c.1221A>C synonymous_variant 0.59
rpoB 761036 c.1230G>C synonymous_variant 0.52
rpoB 761037 c.1231T>C synonymous_variant 0.52
rpoB 761051 c.1245G>T synonymous_variant 0.19
rpoB 761054 c.1248G>C synonymous_variant 0.2
rpoB 761057 c.1251G>C synonymous_variant 0.2
rpoB 761060 c.1254C>G synonymous_variant 0.2
rpoB 761063 c.1257C>G synonymous_variant 0.2
rpoB 761132 c.1326G>T synonymous_variant 0.19
rpoB 761133 c.1327T>C synonymous_variant 0.19
rpoB 761138 c.1332C>G synonymous_variant 0.19
rpoB 761147 c.1341C>T synonymous_variant 0.21
rpoB 761150 c.1344A>T synonymous_variant 0.2
rpoB 761153 c.1347G>C synonymous_variant 0.21
rpoB 761159 c.1353G>T synonymous_variant 0.22
rpoB 761165 c.1359G>C synonymous_variant 0.19
rpoB 761168 c.1362C>G synonymous_variant 0.19
rpoB 761171 c.1365C>T synonymous_variant 0.19
rpoB 761178 c.1372_1374delTCAinsAGC synonymous_variant 0.19
rpoB 761192 c.1386C>G synonymous_variant 0.35
rpoB 761195 c.1389G>C synonymous_variant 0.38
rpoB 761198 c.1392G>C synonymous_variant 0.38
rpoB 761213 c.1407G>C synonymous_variant 0.48
rpoB 761234 c.1428G>C synonymous_variant 0.5
rpoB 761240 c.1434C>T synonymous_variant 0.51
rpoB 761249 c.1443A>G synonymous_variant 0.5
rpoB 761261 c.1455G>T synonymous_variant 0.45
rpoB 761264 c.1458C>G synonymous_variant 0.45
rpoB 761282 c.1476C>T synonymous_variant 0.46
rpoB 761300 c.1494G>A synonymous_variant 0.41
rpoB 761318 c.1512G>C synonymous_variant 0.42
rpoB 761327 c.1521A>G synonymous_variant 0.42
rpoB 761345 c.1539G>C synonymous_variant 0.27
rpoB 761351 c.1545C>T synonymous_variant 0.22
rpoB 761813 c.2007T>C synonymous_variant 0.17
rpoB 761819 c.2013G>T synonymous_variant 0.17
rpoB 761834 c.2028T>G synonymous_variant 0.17
rpoB 761847 p.Cys681Arg missense_variant 0.17
rpoB 761852 c.2046C>G synonymous_variant 0.17
rpoB 761858 c.2052G>C synonymous_variant 0.17
rpoB 761863 p.Ala686Glu missense_variant 0.18
rpoB 761867 c.2061C>A synonymous_variant 0.19
rpoB 761868 p.Asp688Gln missense_variant 0.19
rpoB 761873 c.2067A>C synonymous_variant 0.19
rpoB 761882 c.2076C>A synonymous_variant 0.19
rpoB 761885 c.2079T>C synonymous_variant 0.2
rpoB 761891 c.2085G>C synonymous_variant 0.21
rpoB 761892 p.Ile696Leu missense_variant 0.2
rpoB 761906 c.2100C>G synonymous_variant 0.2
rpoB 761909 c.2103T>C synonymous_variant 0.19
rpoB 761912 c.2106T>C synonymous_variant 0.19
rpoB 761915 p.Asp703Glu missense_variant 0.19
rpoB 761916 p.Asp704Asn missense_variant 0.19
rpoB 761930 c.2124G>A synonymous_variant 0.41
rpoB 761948 c.2142G>C synonymous_variant 0.41
rpoB 761954 c.2148C>G synonymous_variant 0.41
rpoB 761972 c.2166C>T synonymous_variant 0.56
rpoB 761990 c.2184G>C synonymous_variant 0.57
rpoB 762000 c.2194_2195delTCinsAG synonymous_variant 0.53
rpoB 762003 p.Asn733Gln missense_variant 0.51
rpoB 762008 c.2202C>G synonymous_variant 0.51
rpoB 762011 c.2205G>C synonymous_variant 0.51
rpoB 762014 c.2208C>G synonymous_variant 0.49
rpoB 762017 c.2211A>G synonymous_variant 0.49
rpoB 762053 c.2247T>C synonymous_variant 0.56
rpoB 762062 c.2256T>C synonymous_variant 0.58
rpoB 762065 c.2259T>C synonymous_variant 0.58
rpoB 762080 c.2274G>C synonymous_variant 0.55
rpoB 762086 c.2280G>C synonymous_variant 0.55
rpoB 762098 c.2292C>G synonymous_variant 0.55
rpoB 762101 c.2295C>T synonymous_variant 0.54
rpoB 762114 p.Ile770Val missense_variant 0.51
rpoB 762128 c.2322G>C synonymous_variant 0.51
rpoB 762140 c.2334G>C synonymous_variant 0.53
rpoB 762143 c.2337T>C synonymous_variant 0.55
rpoB 762149 c.2343G>C synonymous_variant 0.56
rpoB 762161 c.2355C>T synonymous_variant 0.59
rpoB 762176 c.2370T>C synonymous_variant 0.52
rpoB 762179 c.2373C>T synonymous_variant 0.52
rpoB 762185 c.2379G>C synonymous_variant 0.48
rpoB 762200 c.2394C>T synonymous_variant 0.43
rpoB 762218 c.2412T>C synonymous_variant 0.4
rpoB 762233 c.2427G>C synonymous_variant 0.27
rpoB 762239 c.2433G>A synonymous_variant 0.32
rpoB 762245 c.2439G>T synonymous_variant 0.3
rpoB 762251 c.2445G>C synonymous_variant 0.26
rpoB 762254 c.2448T>C synonymous_variant 0.29
rpoB 762257 c.2451C>G synonymous_variant 0.29
rpoB 762275 c.2469C>T synonymous_variant 0.18
rpoB 762284 c.2478G>T synonymous_variant 0.18
rpoB 762293 c.2487T>G synonymous_variant 0.19
rpoC 762395 c.-975G>C upstream_gene_variant 0.33
rpoC 762398 c.-972T>C upstream_gene_variant 0.33
rpoC 762404 c.-966T>C upstream_gene_variant 0.31
rpoC 762416 c.-954A>G upstream_gene_variant 0.5
rpoB 762426 p.Ser874Gln missense_variant 0.5
rpoC 762434 c.-936T>G upstream_gene_variant 1.0
rpoC 762443 c.-927G>C upstream_gene_variant 0.4
rpoC 762446 c.-924C>A upstream_gene_variant 0.4
rpoC 762452 c.-918G>C upstream_gene_variant 0.38
rpoC 762470 c.-900G>C upstream_gene_variant 0.38
rpoC 762485 c.-885G>C upstream_gene_variant 0.4
rpoB 762489 p.Val895Gln missense_variant 0.4
rpoC 762509 c.-861T>G upstream_gene_variant 0.35
rpoB 762510 p.Ala902Pro missense_variant 0.35
rpoC 762524 c.-846G>T upstream_gene_variant 0.25
rpoC 762527 c.-843G>C upstream_gene_variant 0.25
rpoC 762533 c.-837T>C upstream_gene_variant 0.27
rpoC 762536 c.-834T>C upstream_gene_variant 0.25
rpoC 762537 c.-833T>C upstream_gene_variant 0.25
rpoC 762551 c.-819C>T upstream_gene_variant 0.21
rpoC 762554 c.-816G>T upstream_gene_variant 0.2
rpoC 762560 c.-810A>T upstream_gene_variant 0.2
rpoC 762563 c.-807G>T upstream_gene_variant 0.2
rpoC 762575 c.-795C>T upstream_gene_variant 0.21
rpoB 762630 p.Ala942Thr missense_variant 0.18
rpoC 762770 c.-600C>G upstream_gene_variant 0.18
rpoB 762785 p.Asp993Glu missense_variant 0.25
rpoC 762788 c.-582G>C upstream_gene_variant 0.25
rpoB 762789 p.Leu995Met missense_variant 0.25
rpoB 762795 p.Asp997Asn missense_variant 0.33
rpoB 762799 p.Ala998Gly missense_variant 0.35
rpoC 762812 c.-558C>G upstream_gene_variant 0.39
rpoC 762818 c.-552C>G upstream_gene_variant 0.42
rpoC 762827 c.-543G>T upstream_gene_variant 0.41
rpoC 762830 c.-540C>T upstream_gene_variant 0.41
rpoC 762831 c.-539_-538delAGinsTC upstream_gene_variant 0.41
rpoC 762857 c.-513C>G upstream_gene_variant 0.41
rpoB 762858 p.Thr1018Ser missense_variant 0.41
rpoC 762863 c.-507T>C upstream_gene_variant 0.46
rpoB 762881 p.Met1025Ile missense_variant 0.6
rpoC 762899 c.-471G>C upstream_gene_variant 0.69
rpoC 762917 c.-453C>T upstream_gene_variant 0.7
rpoC 762929 c.-441G>T upstream_gene_variant 0.74
rpoC 762959 c.-411G>C upstream_gene_variant 0.74
rpoC 762971 c.-399G>C upstream_gene_variant 0.75
rpoC 762989 c.-381G>C upstream_gene_variant 0.77
rpoC 762995 c.-375G>T upstream_gene_variant 0.8
rpoC 763007 c.-363C>T upstream_gene_variant 0.82
rpoC 763022 c.-348C>G upstream_gene_variant 0.77
rpoC 763028 c.-342T>C upstream_gene_variant 0.79
rpoC 763031 c.-339T>C upstream_gene_variant 0.21
rpoC 763053 c.-317T>C upstream_gene_variant 0.75
rpoC 763058 c.-312C>G upstream_gene_variant 0.76
rpoC 763070 c.-300T>C upstream_gene_variant 0.75
rpoB 763074 p.Thr1090Val missense_variant 0.74
rpoC 763094 c.-276G>C upstream_gene_variant 0.73
rpoC 763103 c.-267G>C upstream_gene_variant 0.7
rpoC 763115 c.-255T>C upstream_gene_variant 0.63
rpoC 763127 c.-243G>C upstream_gene_variant 0.6
rpoC 763160 c.-210G>C upstream_gene_variant 0.37
rpoC 763166 c.-204A>G upstream_gene_variant 0.37
rpoC 763169 c.-201A>G upstream_gene_variant 0.29
rpoC 763187 c.-183C>G upstream_gene_variant 0.16
rpoC 763441 c.72C>G synonymous_variant 0.16
rpoC 763444 c.75T>C synonymous_variant 0.16
rpoC 763456 c.87A>G synonymous_variant 0.45
rpoC 763468 c.99G>C synonymous_variant 0.48
rpoC 763486 c.117T>C synonymous_variant 0.59
rpoC 763492 c.123G>T synonymous_variant 0.62
rpoC 763528 c.159G>A synonymous_variant 0.78
rpoC 763531 c.162G>T synonymous_variant 0.78
rpoC 763546 c.177A>G synonymous_variant 0.8
rpoC 763570 c.201G>C synonymous_variant 0.77
rpoC 763615 c.246G>C synonymous_variant 0.7
rpoC 763619 p.Arg84Lys missense_variant 0.66
rpoC 763660 c.291T>G synonymous_variant 0.62
rpoC 763669 c.300C>G synonymous_variant 0.62
rpoC 763675 c.306C>T synonymous_variant 0.57
rpoC 763699 c.330G>C synonymous_variant 0.56
rpoC 763702 c.333C>G synonymous_variant 0.52
rpoC 763703 c.334_336delTCGinsAGC synonymous_variant 0.52
rpoC 763708 c.339G>C synonymous_variant 0.52
rpoC 763714 c.345G>C synonymous_variant 0.53
rpoC 763717 c.348T>C synonymous_variant 0.57
rpoC 763723 c.354G>C synonymous_variant 0.62
rpoC 763729 c.360G>C synonymous_variant 0.72
rpoC 763732 c.363C>G synonymous_variant 0.75
rpoC 763741 c.372C>T synonymous_variant 0.79
rpoC 763744 c.375G>C synonymous_variant 0.79
rpoC 763765 c.396T>C synonymous_variant 0.72
rpoC 763768 c.399C>A synonymous_variant 0.72
rpoC 763774 c.405G>C synonymous_variant 0.72
rpoC 763792 p.Glu141Asp missense_variant 0.69
rpoC 763796 p.Met143Leu missense_variant 0.62
rpoC 763807 c.438T>C synonymous_variant 0.67
rpoC 763816 c.447C>G synonymous_variant 0.62
rpoC 763831 c.462A>G synonymous_variant 0.4
rpoC 764107 c.738C>T synonymous_variant 0.25
rpoC 764134 c.765C>A synonymous_variant 0.48
rpoC 764143 c.774G>C synonymous_variant 0.52
rpoC 764147 p.Ser260Ala missense_variant 0.52
rpoC 764153 p.Gln262Lys missense_variant 0.52
rpoC 764161 c.792G>C synonymous_variant 0.46
rpoC 764162 p.Ile265Leu missense_variant 0.46
rpoC 764169 p.Asn267Thr missense_variant 0.52
rpoC 764188 c.819A>G synonymous_variant 0.56
rpoC 764203 c.834G>C synonymous_variant 0.57
rpoC 764206 p.Asp279Glu missense_variant 0.54
rpoC 764207 p.Val280Thr missense_variant 0.54
rpoC 764215 c.846A>C synonymous_variant 0.58
rpoC 764217 p.Asn283Ser missense_variant 0.59
rpoC 764221 c.852C>T synonymous_variant 0.57
rpoC 764227 c.858G>T synonymous_variant 0.58
rpoC 764239 c.870T>G synonymous_variant 0.68
rpoC 764245 c.876C>G synonymous_variant 0.69
rpoC 764254 c.885G>A synonymous_variant 0.71
rpoC 764257 c.888G>C synonymous_variant 0.69
rpoC 764263 c.894G>C synonymous_variant 0.66
rpoC 764266 c.897T>C synonymous_variant 0.66
rpoC 764278 c.909A>G synonymous_variant 0.61
rpoC 764297 p.Met310Leu missense_variant 0.67
rpoC 764308 c.939G>C synonymous_variant 0.69
rpoC 764317 c.948C>T synonymous_variant 0.69
rpoC 764320 c.951C>G synonymous_variant 0.67
rpoC 764344 c.975C>T synonymous_variant 0.61
rpoC 764365 c.996C>T synonymous_variant 0.57
rpoC 764371 c.1002G>C synonymous_variant 0.54
rpoC 764377 c.1008C>G synonymous_variant 0.53
rpoC 764380 c.1011G>C synonymous_variant 0.51
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.51
rpoC 764398 c.1029G>C synonymous_variant 0.44
rpoC 764404 c.1035C>T synonymous_variant 0.34
rpoC 764405 c.1036_1038delAGGinsCGT synonymous_variant 0.34
rpoC 764428 c.1059G>C synonymous_variant 0.56
rpoC 764431 c.1062G>C synonymous_variant 0.56
rpoC 764434 c.1065A>G synonymous_variant 0.56
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 0.56
rpoC 764446 c.1077T>C synonymous_variant 0.53
rpoC 764449 c.1080G>C synonymous_variant 0.51
rpoC 764455 c.1086G>T synonymous_variant 0.54
rpoC 764458 c.1089G>C synonymous_variant 0.53
rpoC 764461 c.1092A>G synonymous_variant 0.53
rpoC 764497 c.1128A>G synonymous_variant 0.67
rpoC 764500 c.1131C>T synonymous_variant 0.65
rpoC 764503 c.1134G>C synonymous_variant 0.65
rpoC 764509 c.1140G>C synonymous_variant 0.65
rpoC 764512 c.1143G>C synonymous_variant 0.67
rpoC 764521 c.1152T>C synonymous_variant 0.73
rpoC 764536 c.1167G>T synonymous_variant 0.78
rpoC 764539 c.1170C>G synonymous_variant 0.78
rpoC 764548 c.1179G>A synonymous_variant 0.81
rpoC 764575 c.1206T>G synonymous_variant 0.84
rpoC 764602 c.1233C>T synonymous_variant 0.88
rpoC 764605 c.1236G>T synonymous_variant 0.88
rpoC 764611 c.1242G>T synonymous_variant 0.88
rpoC 764632 c.1263T>C synonymous_variant 0.87
rpoC 764650 c.1281G>T synonymous_variant 0.8
rpoC 764662 c.1293G>C synonymous_variant 0.8
rpoC 764686 c.1317C>T synonymous_variant 0.76
rpoC 764692 c.1323C>T synonymous_variant 0.76
rpoC 764713 c.1344G>T synonymous_variant 0.75
rpoC 764716 c.1347G>C synonymous_variant 0.75
rpoC 764746 c.1377G>T synonymous_variant 0.72
rpoC 764749 c.1380G>C synonymous_variant 0.72
rpoC 764752 c.1383G>C synonymous_variant 0.72
rpoC 764758 c.1389C>G synonymous_variant 0.71
rpoC 764764 p.His465Gln missense_variant 0.69
rpoC 764797 c.1428G>C synonymous_variant 0.62
rpoC 764803 c.1434C>T synonymous_variant 0.63
rpoC 764824 c.1455T>C synonymous_variant 0.58
rpoC 764827 c.1458G>C synonymous_variant 0.62
rpoC 764854 c.1485G>C synonymous_variant 0.58
rpoC 764858 c.1489T>C synonymous_variant 0.58
rpoC 764863 c.1494G>C synonymous_variant 0.54
rpoC 764869 c.1500C>T synonymous_variant 0.54
rpoC 764872 c.1503A>T synonymous_variant 0.5
rpoC 764875 c.1506C>G synonymous_variant 0.49
rpoC 764878 c.1509C>G synonymous_variant 0.47
rpoC 764887 c.1518G>C synonymous_variant 0.54
rpoC 764888 c.1519T>C synonymous_variant 0.54
rpoC 764911 c.1542A>G synonymous_variant 0.57
rpoC 764912 p.Met515Gln missense_variant 0.54
rpoC 764917 c.1548G>C synonymous_variant 0.54
rpoC 764920 c.1551G>C synonymous_variant 0.55
rpoC 764923 c.1554A>G synonymous_variant 0.55
rpoC 764935 c.1566T>C synonymous_variant 0.62
rpoC 764948 c.1579_1581delTTGinsCTC synonymous_variant 0.62
rpoC 764968 c.1599T>C synonymous_variant 0.67
rpoC 765004 c.1635G>T synonymous_variant 0.54
rpoC 765007 c.1638T>G synonymous_variant 0.54
rpoC 765008 c.1639T>C synonymous_variant 0.54
rpoC 765013 c.1644C>T synonymous_variant 0.53
rpoC 765016 c.1647C>G synonymous_variant 0.54
rpoC 765019 c.1650A>G synonymous_variant 0.54
rpoC 765034 c.1665T>G synonymous_variant 0.54
rpoC 765040 c.1671T>C synonymous_variant 0.5
rpoC 765041 c.1672T>C synonymous_variant 0.5
rpoC 765047 c.1678T>C synonymous_variant 0.49
rpoC 765052 c.1683C>G synonymous_variant 0.51
rpoC 765055 c.1686C>G synonymous_variant 0.5
rpoC 765073 c.1704G>C synonymous_variant 0.5
rpoC 765076 c.1707A>G synonymous_variant 0.49
rpoC 765079 c.1710T>G synonymous_variant 0.46
rpoC 765082 c.1713G>T synonymous_variant 0.47
rpoC 765085 c.1716T>C synonymous_variant 0.47
rpoC 765089 c.1720T>C synonymous_variant 0.49
rpoC 765103 c.1734G>T synonymous_variant 0.44
rpoC 765121 c.1752G>T synonymous_variant 0.33
rpoC 765466 c.2097C>T synonymous_variant 0.33
rpoC 765469 c.2100G>C synonymous_variant 0.3
rpoC 765478 c.2109T>C synonymous_variant 0.33
rpoC 765493 c.2124G>C synonymous_variant 0.38
rpoC 765499 c.2130C>A synonymous_variant 0.38
rpoC 765525 p.Ala719Val missense_variant 0.31
rpoC 765532 c.2163C>T synonymous_variant 0.31
rpoC 765544 c.2175C>T synonymous_variant 0.27
rpoC 765547 c.2178C>T synonymous_variant 0.27
rpoC 765548 c.2179_2181delAGCinsTCG synonymous_variant 0.27
rpoC 765553 c.2184C>T synonymous_variant 0.27
rpoC 765556 c.2187G>C synonymous_variant 0.27
rpoC 765559 c.2190G>C synonymous_variant 0.3
rpoC 765580 c.2211G>C synonymous_variant 0.25
rpoC 765590 p.Arg741Ala missense_variant 0.23
rpoC 765596 p.Lys743Ala missense_variant 0.21
rpoC 765844 c.2475C>G synonymous_variant 0.25
rpoC 765875 p.Val836Ile missense_variant 0.5
rpoC 765886 c.2517C>G synonymous_variant 0.42
rpoC 765892 c.2523T>C synonymous_variant 0.39
rpoC 765898 c.2529C>T synonymous_variant 0.39
rpoC 765907 c.2538G>C synonymous_variant 0.33
rpoC 765908 p.Leu847Ala missense_variant 0.33
rpoC 765928 c.2559C>G synonymous_variant 0.35
rpoC 765934 c.2565C>T synonymous_variant 0.3
rpoC 765940 c.2571A>T synonymous_variant 0.3
rpoC 765946 c.2577C>T synonymous_variant 0.23
rpoC 765947 c.2578T>C synonymous_variant 0.22
rpoC 765952 c.2583G>C synonymous_variant 0.26
rpoC 765961 c.2592G>A synonymous_variant 0.26
rpoC 765962 c.2593_2595delTTGinsCTT synonymous_variant 0.26
rpoC 765967 c.2598C>T synonymous_variant 0.27
rpoC 765970 c.2601C>G synonymous_variant 0.27
rpoC 765979 c.2610C>G synonymous_variant 0.32
rpoC 765982 c.2613C>T synonymous_variant 0.32
rpoC 765994 c.2625A>T synonymous_variant 0.18
rpoC 766291 c.2922G>C synonymous_variant 0.17
rpoC 766297 c.2928G>C synonymous_variant 0.18
rpoC 766299 p.Thr977Met missense_variant 0.18
rpoC 766309 c.2940G>C synonymous_variant 0.4
rpoC 766312 c.2943T>C synonymous_variant 0.43
rpoC 766315 c.2946C>G synonymous_variant 0.43
rpoC 766321 c.2952C>G synonymous_variant 0.5
rpoC 766333 c.2964G>C synonymous_variant 0.6
rpoC 766345 c.2976T>C synonymous_variant 0.56
rpoC 766348 c.2979A>G synonymous_variant 0.53
rpoC 766357 c.2988C>T synonymous_variant 0.59
rpoC 766361 p.Val998Ile missense_variant 0.59
rpoC 766366 c.2997C>G synonymous_variant 0.62
rpoC 766375 c.3006C>G synonymous_variant 0.59
rpoC 766381 c.3012C>T synonymous_variant 0.56
rpoC 766384 c.3015A>G synonymous_variant 0.56
rpoC 766390 c.3021C>T synonymous_variant 0.59
rpoC 766402 c.3033C>G synonymous_variant 0.61
rpoC 766408 c.3039C>T synonymous_variant 0.6
rpoC 766411 c.3042C>G synonymous_variant 0.6
rpoC 766435 p.Glu1022Asp missense_variant 0.57
rpoC 766456 c.3087C>G synonymous_variant 0.21
rpoC 766459 c.3090G>T synonymous_variant 0.2
rpoC 766462 c.3093G>C synonymous_variant 0.21
rpoC 766612 c.3243C>G synonymous_variant 0.22
rpoC 766618 c.3249G>T synonymous_variant 0.22
rpoC 766624 c.3255G>T synonymous_variant 0.22
rpoC 766630 c.3261G>T synonymous_variant 0.24
rpoC 766633 c.3264G>C synonymous_variant 0.22
rpoC 766645 p.Glu1092Asp missense_variant 0.27
rpoC 766651 c.3282T>C synonymous_variant 0.27
rpoC 766657 c.3288A>G synonymous_variant 0.27
rpoC 766660 c.3291G>T synonymous_variant 0.27
rpoC 766661 p.Val1098Leu missense_variant 0.27
rpoC 766667 p.Ser1100Ala missense_variant 0.27
rpoC 766672 c.3303T>C synonymous_variant 0.29
rpoC 766702 c.3333G>C synonymous_variant 0.39
rpoC 766708 c.3339A>G synonymous_variant 0.39
rpoC 766711 c.3342C>T synonymous_variant 0.39
rpoC 766717 c.3348C>G synonymous_variant 0.44
rpoC 766718 p.Asp1117Asn missense_variant 0.44
rpoC 766726 c.3357T>C synonymous_variant 0.44
rpoC 766738 c.3369G>C synonymous_variant 0.36
rpoC 766741 c.3372G>C synonymous_variant 0.23
rpoC 766742 p.Gln1125Met missense_variant 0.23
rpoC 766747 c.3378C>T synonymous_variant 0.23
rpoC 766750 c.3381C>G synonymous_variant 0.25
rpoC 766753 c.3384C>T synonymous_variant 0.25
rpoC 766754 p.Glu1129Gln missense_variant 0.25
rpoC 766763 p.Ile1132Val missense_variant 0.33
rpoC 766774 c.3405T>C synonymous_variant 0.23
rpoC 766775 p.Arg1136Asn missense_variant 0.23
rpoC 766798 c.3429C>G synonymous_variant 0.38
rpoC 766799 p.Ala1144Ser missense_variant 0.38
rpoC 766804 c.3435A>G synonymous_variant 0.44
rpoC 766835 p.Val1156Thr missense_variant 0.39
rpoC 766843 c.3474T>G synonymous_variant 0.4
rpoC 766846 c.3477C>T synonymous_variant 0.4
rpoC 766858 c.3489C>T synonymous_variant 0.4
rpoC 766861 c.3492G>C synonymous_variant 0.38
rpoC 766867 c.3498C>G synonymous_variant 0.43
rpoC 766882 c.3513C>T synonymous_variant 0.44
rpoC 766894 c.3525T>C synonymous_variant 0.45
rpoC 766895 c.3526T>C synonymous_variant 0.45
rpoC 766900 c.3531T>C synonymous_variant 0.42
rpoC 766909 c.3540G>C synonymous_variant 0.4
rpoC 766911 p.Ile1181Thr missense_variant 0.4
rpoC 766915 p.Asp1182Glu missense_variant 0.44
rpoC 766918 c.3549C>T synonymous_variant 0.42
rpoC 766921 c.3552G>C synonymous_variant 0.42
rpoC 766933 c.3564A>C synonymous_variant 0.36
rpoC 766935 p.Glu1189Ala missense_variant 0.36
rpoC 766942 c.3573C>G synonymous_variant 0.33
rpoC 766944 p.Arg1192Gln missense_variant 0.36
rpoC 766948 c.3579G>C synonymous_variant 0.33
rpoC 766952 p.Ala1195Ser missense_variant 0.36
rpoC 766960 c.3591C>T synonymous_variant 0.38
rpoC 766963 c.3594T>C synonymous_variant 0.43
rpoC 766972 c.3603G>C synonymous_variant 0.43
rpoC 766987 c.3618G>C synonymous_variant 0.5
rpoC 766990 c.3621G>C synonymous_variant 0.57
rpoC 766996 c.3627C>T synonymous_variant 0.58
rpoC 767002 c.3633G>C synonymous_variant 0.64
rpoC 767008 c.3639G>C synonymous_variant 0.58
rpoC 767017 c.3648C>G synonymous_variant 0.65
rpoC 767023 p.Asp1218Glu missense_variant 0.67
rpoC 767026 c.3657G>C synonymous_variant 0.67
rpoC 767059 c.3690T>G synonymous_variant 0.71
rpoC 767062 c.3693C>T synonymous_variant 0.71
rpoC 767065 c.3696G>C synonymous_variant 0.69
rpoC 767080 c.3711G>C synonymous_variant 0.72
rpoC 767087 p.Cys1240Ser missense_variant 0.72
rpoC 767098 c.3729T>C synonymous_variant 0.68
rpoC 767104 c.3735C>G synonymous_variant 0.69
rpoC 767106 p.Asn1246Ile missense_variant 0.69
rpoC 767119 c.3750A>G synonymous_variant 0.62
rpoC 767134 c.3765C>T synonymous_variant 0.56
rpoC 767138 c.3769C>T synonymous_variant 0.5
rpoC 767149 c.3780C>T synonymous_variant 0.46
rpoC 767155 c.3786C>G synonymous_variant 0.42
rpoC 767158 c.3789T>C synonymous_variant 0.38
rpoC 767167 c.3798C>G synonymous_variant 0.3
rpoC 767181 p.Ala1271Glu missense_variant 0.18
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 777668 p.Ile271Met missense_variant 1.0
mmpL5 778684 c.-204C>T upstream_gene_variant 0.14
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781658 c.99A>G synonymous_variant 0.16
rpsL 781670 c.111G>C synonymous_variant 0.3
rpsL 781682 c.123T>C synonymous_variant 0.35
rpsL 781700 c.141G>C synonymous_variant 0.33
rpsL 781706 c.147T>C synonymous_variant 0.33
rpsL 781709 c.150G>T synonymous_variant 0.33
rpsL 781715 c.156T>C synonymous_variant 0.33
rpsL 781725 p.Lys56Arg missense_variant 0.35
rpsL 781728 c.169T>C synonymous_variant 0.35
rpsL 781736 c.177T>C synonymous_variant 0.38
rpsL 781737 p.Gln60Ser missense_variant 0.38
rpsL 781751 c.192G>C synonymous_variant 0.44
rpsL 781754 c.195G>T synonymous_variant 0.44
rpsL 781760 c.201T>C synonymous_variant 0.44
rpsL 781763 c.204C>G synonymous_variant 0.44
rpsL 781766 c.207C>T synonymous_variant 0.47
rpsL 781769 c.210G>A synonymous_variant 0.5
rpsL 781781 c.222G>C synonymous_variant 0.55
rpsL 781802 c.243G>C synonymous_variant 0.55
rpsL 781814 c.255C>T synonymous_variant 0.39
rpsL 781817 c.258G>T synonymous_variant 0.39
rpsL 781829 c.270G>C synonymous_variant 0.42
rpsL 781832 c.273T>C synonymous_variant 0.46
rpsL 781838 c.279G>T synonymous_variant 0.4
rpsL 781845 p.Lys96Arg missense_variant 0.35
rpsL 781859 c.300T>C synonymous_variant 0.36
rpsL 781865 c.306G>C synonymous_variant 0.35
rpsL 781868 c.309T>C synonymous_variant 0.35
rpsL 781871 c.312G>C synonymous_variant 0.32
rpsL 781884 p.Asn109Asp missense_variant 0.18
rpsL 781892 c.333A>G synonymous_variant 0.24
rpsL 781898 c.339A>T synonymous_variant 0.21
rpsL 781907 c.348T>C synonymous_variant 0.2
rpsL 781916 c.357T>C synonymous_variant 0.15
rplC 800610 c.-199_-197delCTAinsTTG upstream_gene_variant 0.49
rplC 800615 c.-194G>T upstream_gene_variant 0.49
rplC 800618 c.-191T>C upstream_gene_variant 0.5
rplC 800621 c.-188G>A upstream_gene_variant 0.47
rplC 800633 c.-176T>C upstream_gene_variant 0.55
rplC 800648 c.-161A>G upstream_gene_variant 0.52
rplC 800667 c.-142_-140delTCGinsAGC upstream_gene_variant 0.39
rplC 800672 c.-137G>C upstream_gene_variant 0.36
rplC 800690 c.-119C>T upstream_gene_variant 0.37
rplC 800693 c.-116A>T upstream_gene_variant 0.35
rplC 800702 c.-107G>A upstream_gene_variant 0.35
rplC 800703 c.-106_-104delTTGinsCTC upstream_gene_variant 0.35
rplC 800715 c.-94A>C upstream_gene_variant 0.34
rplC 800720 c.-89T>C upstream_gene_variant 0.34
rplC 800723 c.-86C>G upstream_gene_variant 0.34
rplC 800738 c.-71T>C upstream_gene_variant 0.37
rplC 800771 c.-38C>T upstream_gene_variant 0.36
atpE 1460980 c.-65A>G upstream_gene_variant 0.17
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.5
rrs 1471929 n.84C>G non_coding_transcript_exon_variant 0.48
rrs 1471930 n.85G>C non_coding_transcript_exon_variant 0.5
rrs 1471931 n.86G>T non_coding_transcript_exon_variant 0.5
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 0.5
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.5
rrs 1471979 n.134T>C non_coding_transcript_exon_variant 0.45
rrs 1471980 n.135G>T non_coding_transcript_exon_variant 0.45
rrs 1471981 n.136C>G non_coding_transcript_exon_variant 0.45
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.45
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.2
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.25
rrs 1472067 n.222G>T non_coding_transcript_exon_variant 0.25
rrs 1472068 n.223T>A non_coding_transcript_exon_variant 0.25
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.55
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.7
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.71
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.88
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.9
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.9
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.93
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.96
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.97
rrs 1472288 n.443A>T non_coding_transcript_exon_variant 0.97
rrs 1472289 n.444T>C non_coding_transcript_exon_variant 0.97
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.97
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.97
rrs 1472326 n.481T>A non_coding_transcript_exon_variant 0.97
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.97
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.98
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.94
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.92
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.92
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.92
rrs 1472445 n.601dupT non_coding_transcript_exon_variant 0.92
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.92
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.93
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.96
rrs 1472497 n.652G>A non_coding_transcript_exon_variant 0.97
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.94
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.98
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.97
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.97
rrs 1472680 n.835C>T non_coding_transcript_exon_variant 0.96
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.96
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.96
rrs 1472686 n.841G>A non_coding_transcript_exon_variant 0.97
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.92
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 0.91
rrs 1472841 n.996G>A non_coding_transcript_exon_variant 0.91
rrs 1472846 n.1001_1002insA non_coding_transcript_exon_variant 0.91
rrs 1472849 n.1005delT non_coding_transcript_exon_variant 0.91
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 0.97
rrs 1472859 n.1014G>C non_coding_transcript_exon_variant 0.97
rrs 1472860 n.1015C>T non_coding_transcript_exon_variant 0.97
rrs 1472873 n.1028C>T non_coding_transcript_exon_variant 0.91
rrs 1472874 n.1029C>T non_coding_transcript_exon_variant 0.91
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.91
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.93
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.9
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.9
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.9
rrs 1472960 n.1115G>A non_coding_transcript_exon_variant 0.9
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.88
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.88
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.88
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.88
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.88
rrs 1472986 n.1141C>T non_coding_transcript_exon_variant 0.88
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.88
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.88
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.88
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.97
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.98
rrs 1473099 n.1254T>G non_coding_transcript_exon_variant 0.97
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.97
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.97
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.97
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.97
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.95
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.99
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.99
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.97
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.97
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.86
rrl 1473694 n.37C>T non_coding_transcript_exon_variant 0.24
rrl 1473696 n.39T>C non_coding_transcript_exon_variant 0.24
rrl 1473698 n.41G>A non_coding_transcript_exon_variant 0.25
rrl 1473699 n.42A>G non_coding_transcript_exon_variant 0.25
rrl 1473719 n.62G>T non_coding_transcript_exon_variant 0.33
rrl 1473724 n.67T>C non_coding_transcript_exon_variant 0.32
rrl 1473731 n.74T>G non_coding_transcript_exon_variant 0.39
rrl 1473732 n.75G>T non_coding_transcript_exon_variant 0.39
rrl 1473743 n.86C>T non_coding_transcript_exon_variant 0.57
rrl 1473750 n.93C>A non_coding_transcript_exon_variant 0.57
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.56
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.56
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.58
rrl 1473768 n.111A>G non_coding_transcript_exon_variant 0.67
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.69
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.79
rrl 1473811 n.154C>A non_coding_transcript_exon_variant 0.84
rrl 1473812 n.155G>C non_coding_transcript_exon_variant 0.86
rrl 1473815 n.158T>G non_coding_transcript_exon_variant 0.89
rrl 1473822 n.165A>G non_coding_transcript_exon_variant 0.84
rrl 1473828 n.171_172insCT non_coding_transcript_exon_variant 0.91
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.91
rrl 1473835 n.179delA non_coding_transcript_exon_variant 0.91
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.91
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.91
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.94
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.91
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.91
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.88
rrl 1473922 n.265A>G non_coding_transcript_exon_variant 0.73
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.73
rrl 1473934 n.277G>A non_coding_transcript_exon_variant 0.43
rrl 1473935 n.278C>T non_coding_transcript_exon_variant 0.33
rrl 1473936 n.279A>G non_coding_transcript_exon_variant 0.33
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.33
rrl 1473945 n.288T>A non_coding_transcript_exon_variant 0.33
rrl 1473946 n.289A>T non_coding_transcript_exon_variant 0.33
rrl 1473968 n.311C>T non_coding_transcript_exon_variant 0.5
rrl 1473971 n.314G>T non_coding_transcript_exon_variant 0.5
rrl 1474116 n.459G>A non_coding_transcript_exon_variant 1.0
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 1.0
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 1.0
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 1.0
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 1.0
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 1.0
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 1.0
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 1.0
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 1.0
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 1.0
rrl 1474202 n.545T>A non_coding_transcript_exon_variant 1.0
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474264 n.607T>G non_coding_transcript_exon_variant 1.0
rrl 1474265 n.608G>A non_coding_transcript_exon_variant 1.0
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 1.0
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 1.0
rrl 1474282 n.625G>A non_coding_transcript_exon_variant 1.0
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 1.0
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 1.0
rrl 1474353 n.696A>C non_coding_transcript_exon_variant 1.0
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 1.0
rrl 1474355 n.698A>C non_coding_transcript_exon_variant 1.0
rrl 1474356 n.699T>G non_coding_transcript_exon_variant 1.0
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 1.0
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 1.0
rrl 1474496 n.839C>T non_coding_transcript_exon_variant 0.93
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.93
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.93
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.94
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.94
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.94
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.94
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.94
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.94
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.96
rrl 1474627 n.970G>C non_coding_transcript_exon_variant 0.96
rrl 1474628 n.971C>T non_coding_transcript_exon_variant 0.95
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 1.0
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 1.0
rrl 1474717 n.1060_1061insGTGAG non_coding_transcript_exon_variant 1.0
rrl 1474721 n.1064G>A non_coding_transcript_exon_variant 1.0
rrl 1474722 n.1065T>G non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 1.0
rrl 1474740 n.1083G>C non_coding_transcript_exon_variant 1.0
rrl 1474747 n.1090C>G non_coding_transcript_exon_variant 1.0
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 1.0
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 1.0
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.98
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.97
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.97
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.97
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 0.94
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.89
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.89
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.82
rrl 1475031 n.1374G>T non_coding_transcript_exon_variant 0.92
rrl 1475059 n.1404_1405delCA non_coding_transcript_exon_variant 1.0
rrl 1475064 n.1407G>A non_coding_transcript_exon_variant 1.0
rrl 1475067 n.1410_1411insG non_coding_transcript_exon_variant 1.0
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 1.0
rrl 1475079 n.1422T>C non_coding_transcript_exon_variant 1.0
rrl 1475080 n.1423G>T non_coding_transcript_exon_variant 1.0
rrl 1475081 n.1424C>G non_coding_transcript_exon_variant 1.0
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 1.0
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 1.0
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 1.0
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 1.0
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 1.0
rrl 1475475 n.1818C>T non_coding_transcript_exon_variant 1.0
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.5
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.5
rrl 1475481 n.1824C>G non_coding_transcript_exon_variant 0.5
rrl 1475482 n.1825A>G non_coding_transcript_exon_variant 0.5
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.5
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.8
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.86
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.85
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.85
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.85
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.82
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.8
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.89
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.91
rrl 1475762 n.2106_2108delCAA non_coding_transcript_exon_variant 0.95
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.96
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.97
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 1.0
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 1.0
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.99
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.99
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.97
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.96
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.97
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.96
rrl 1476029 n.2373_2377delACCTC non_coding_transcript_exon_variant 0.88
rrl 1476056 n.2399G>A non_coding_transcript_exon_variant 0.95
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.94
rrl 1476088 n.2431A>T non_coding_transcript_exon_variant 0.95
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.94
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.96
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.97
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.97
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.96
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.96
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.96
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.96
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.97
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.97
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.97
rrl 1476251 n.2594T>G non_coding_transcript_exon_variant 0.97
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.96
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.96
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.99
rrl 1476297 n.2640C>A non_coding_transcript_exon_variant 0.96
rrl 1476298 n.2641C>A non_coding_transcript_exon_variant 0.96
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.96
rrl 1476309 n.2652G>T non_coding_transcript_exon_variant 0.96
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.98
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.99
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.94
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.94
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.94
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.93
rrl 1476608 n.2951C>T non_coding_transcript_exon_variant 0.93
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.91
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.93
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.91
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.91
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.91
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.86
rrl 1476665 n.3008T>G non_coding_transcript_exon_variant 0.85
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 0.85
rrl 1476675 n.3018C>G non_coding_transcript_exon_variant 0.83
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 0.86
rrl 1476694 n.3037G>A non_coding_transcript_exon_variant 0.8
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 0.8
rrl 1476699 n.3042A>T non_coding_transcript_exon_variant 0.8
rpsA 1833586 c.45C>T synonymous_variant 0.23
rpsA 1833589 c.48A>C synonymous_variant 0.25
rpsA 1833595 c.54T>G synonymous_variant 0.3
rpsA 1833596 p.Ser19Ala missense_variant 0.3
rpsA 1833607 c.66T>C synonymous_variant 0.23
rpsA 1833613 c.72C>A synonymous_variant 0.23
rpsA 1833616 c.75A>C synonymous_variant 0.23
rpsA 1833619 c.78A>C synonymous_variant 0.25
rpsA 1833623 p.Lys28Ser missense_variant 0.23
rpsA 1833664 c.123C>G synonymous_variant 0.62
rpsA 1833676 c.135A>G synonymous_variant 0.67
rpsA 1833679 c.138G>C synonymous_variant 0.65
rpsA 1833682 c.141C>T synonymous_variant 0.65
rpsA 1833685 c.144G>T synonymous_variant 0.7
rpsA 1833694 c.153G>T synonymous_variant 0.74
rpsA 1833697 c.156C>G synonymous_variant 0.78
rpsA 1833709 c.168C>T synonymous_variant 0.78
rpsA 1833733 c.192C>T synonymous_variant 0.76
rpsA 1833734 p.Ala65Ser missense_variant 0.76
rpsA 1833748 c.207C>G synonymous_variant 0.79
rpsA 1833770 p.Asn77Ser missense_variant 0.79
rpsA 1833781 c.240T>C synonymous_variant 0.79
rpsA 1833782 p.Ser81Asn missense_variant 0.79
rpsA 1833802 c.261A>G synonymous_variant 0.82
rpsA 1833808 c.267G>T synonymous_variant 0.8
rpsA 1833811 c.270G>T synonymous_variant 0.81
rpsA 1833832 c.291G>A synonymous_variant 0.88
rpsA 1833838 c.297G>C synonymous_variant 0.86
rpsA 1833847 c.306C>G synonymous_variant 0.87
rpsA 1833856 c.315A>G synonymous_variant 0.85
rpsA 1833894 p.Ala118Glu missense_variant 0.81
rpsA 1833904 c.363G>A synonymous_variant 0.8
rpsA 1833928 c.387G>C synonymous_variant 0.8
rpsA 1833949 c.408T>C synonymous_variant 0.84
rpsA 1833961 c.420C>G synonymous_variant 0.84
rpsA 1833970 c.429G>C synonymous_variant 0.83
rpsA 1833979 c.438T>C synonymous_variant 0.84
rpsA 1833985 c.444G>C synonymous_variant 0.81
rpsA 1833988 c.447C>G synonymous_variant 0.82
rpsA 1833991 c.450C>A synonymous_variant 0.82
rpsA 1833997 c.456G>C synonymous_variant 0.83
rpsA 1834009 c.468C>T synonymous_variant 0.84
rpsA 1834012 c.471G>T synonymous_variant 0.85
rpsA 1834021 c.480C>T synonymous_variant 0.82
rpsA 1834030 c.489C>G synonymous_variant 0.81
rpsA 1834051 c.510G>A synonymous_variant 0.8
rpsA 1834069 c.528G>C synonymous_variant 0.79
rpsA 1834099 c.558C>G synonymous_variant 0.67
rpsA 1834105 c.564C>T synonymous_variant 0.62
rpsA 1834108 c.567C>A synonymous_variant 0.58
rpsA 1834114 c.573G>C synonymous_variant 0.54
rpsA 1834135 c.594G>C synonymous_variant 0.61
rpsA 1834151 p.Asn204His missense_variant 0.35
rpsA 1834154 p.Asn205Gln missense_variant 0.35
rpsA 1834157 c.616_618delTTGinsCTC synonymous_variant 0.38
rpsA 1834162 c.621A>G synonymous_variant 0.38
rpsA 1834165 c.624A>G synonymous_variant 0.38
rpsA 1834167 c.628_629delAC frameshift_variant 0.38
rpsA 1834172 c.631_632insGG frameshift_variant 0.35
rpsA 1834177 c.636A>C synonymous_variant 0.42
rpsA 1834183 c.642T>C synonymous_variant 0.48
rpsA 1834210 c.669C>T synonymous_variant 0.62
rpsA 1834231 c.690T>C synonymous_variant 0.55
rpsA 1834234 c.693G>C synonymous_variant 0.55
rpsA 1834246 c.705G>C synonymous_variant 0.57
rpsA 1834249 c.708T>C synonymous_variant 0.55
rpsA 1834252 c.711C>T synonymous_variant 0.54
rpsA 1834261 c.720A>C synonymous_variant 0.55
rpsA 1834264 c.723G>C synonymous_variant 0.57
rpsA 1834279 c.738C>T synonymous_variant 0.61
rpsA 1834282 c.741C>T synonymous_variant 0.62
rpsA 1834294 c.753G>C synonymous_variant 0.62
rpsA 1834298 p.Gln253Thr missense_variant 0.62
rpsA 1834318 c.777C>G synonymous_variant 0.71
rpsA 1834327 c.786G>T synonymous_variant 0.73
rpsA 1834339 c.798C>T synonymous_variant 0.73
rpsA 1834340 p.Met267Leu missense_variant 0.73
rpsA 1834348 c.807T>C synonymous_variant 0.77
rpsA 1834354 c.813G>T synonymous_variant 0.79
rpsA 1834357 c.816T>G synonymous_variant 0.81
rpsA 1834366 c.825A>G synonymous_variant 0.83
rpsA 1834375 c.834G>A synonymous_variant 0.84
rpsA 1834396 c.855G>T synonymous_variant 0.89
rpsA 1834399 p.His286Gln missense_variant 0.88
rpsA 1834408 c.867C>G synonymous_variant 0.89
rpsA 1834411 c.870T>C synonymous_variant 0.89
rpsA 1834423 c.882G>T synonymous_variant 0.9
rpsA 1834451 c.910T>C synonymous_variant 0.88
rpsA 1834468 c.927A>G synonymous_variant 0.89
rpsA 1834483 p.Glu314Asp missense_variant 0.88
rpsA 1834486 p.Glu315Asp missense_variant 0.88
rpsA 1834489 c.948T>C synonymous_variant 0.88
rpsA 1834501 c.960G>C synonymous_variant 0.86
rpsA 1834504 c.963G>C synonymous_variant 0.86
rpsA 1834528 c.987T>C synonymous_variant 0.82
rpsA 1834540 c.999G>C synonymous_variant 0.79
rpsA 1834543 c.1002C>T synonymous_variant 0.76
rpsA 1834546 c.1005T>C synonymous_variant 0.78
rpsA 1834552 c.1011G>T synonymous_variant 0.8
rpsA 1834555 c.1014T>C synonymous_variant 0.81
rpsA 1834600 c.1059G>C synonymous_variant 0.76
rpsA 1834606 c.1065C>T synonymous_variant 0.76
rpsA 1834612 c.1071G>T synonymous_variant 0.76
rpsA 1834619 c.1078T>C synonymous_variant 0.77
rpsA 1834622 c.1081_1083delTCGinsAGC synonymous_variant 0.75
rpsA 1834633 c.1092A>G synonymous_variant 0.78
rpsA 1834639 c.1098T>C synonymous_variant 0.76
rpsA 1834666 c.1125G>C synonymous_variant 0.73
rpsA 1834667 p.Ala376Ser missense_variant 0.73
rpsA 1834690 c.1149T>C synonymous_variant 0.78
rpsA 1834732 c.1191T>C synonymous_variant 0.68
rpsA 1834738 c.1197A>G synonymous_variant 0.69
rpsA 1834753 c.1212T>C synonymous_variant 0.62
rpsA 1834756 p.Glu405Asp missense_variant 0.6
rpsA 1834759 c.1218A>T synonymous_variant 0.58
rpsA 1834761 p.Phe407Tyr missense_variant 0.58
rpsA 1834765 c.1224A>G synonymous_variant 0.58
rpsA 1834776 p.Ala412Glu missense_variant 0.57
rpsA 1834780 c.1239A>G synonymous_variant 0.57
rpsA 1834786 c.1245A>G synonymous_variant 0.55
rpsA 1834787 p.Ala416Asn missense_variant 0.55
rpsA 1834792 c.1251G>C synonymous_variant 0.53
rpsA 1834810 c.1269C>T synonymous_variant 0.58
rpsA 1834813 c.1272G>C synonymous_variant 0.57
rpsA 1834837 p.Met432Ile missense_variant 0.35
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2103191 c.-149G>A upstream_gene_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155659 c.453C>G synonymous_variant 0.56
katG 2155671 c.441G>C synonymous_variant 0.64
katG 2155674 c.438G>A synonymous_variant 0.64
katG 2155677 c.435C>A synonymous_variant 0.64
katG 2155680 c.432G>A synonymous_variant 0.64
katG 2155689 c.421_423delTTGinsCTC synonymous_variant 0.6
katG 2155695 p.Ala139Val missense_variant 0.56
katG 2155716 c.396T>G synonymous_variant 0.58
katG 2155719 c.393G>T synonymous_variant 0.58
katG 2155722 c.390G>T synonymous_variant 0.61
katG 2155728 c.384G>T synonymous_variant 0.56
katG 2155737 c.375C>A synonymous_variant 0.5
katG 2155741 p.Gly124Thr missense_variant 0.5
katG 2155743 c.369G>A synonymous_variant 0.47
katG 2155749 c.363C>A synonymous_variant 0.5
katG 2155755 c.357C>T synonymous_variant 0.5
katG 2155764 p.His116Glu missense_variant 0.53
katG 2155769 p.Ile115Val missense_variant 0.53
katG 2155782 c.330C>G synonymous_variant 0.53
katG 2155785 c.327T>C synonymous_variant 0.53
katG 2155794 p.Ala106Ser missense_variant 0.33
katG 2155806 c.306T>C synonymous_variant 0.15
katG 2155811 c.301C>T synonymous_variant 0.15
katG 2155812 c.300G>C synonymous_variant 0.15
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2169323 c.1290C>G synonymous_variant 0.14
PPE35 2169326 c.1287C>T synonymous_variant 0.17
PPE35 2169337 p.Asp426His missense_variant 0.17
Rv1979c 2221732 p.Pro478Gln missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289047 c.195C>T synonymous_variant 1.0
pncA 2289365 c.-125delC upstream_gene_variant 1.0
kasA 2517941 c.-174C>G upstream_gene_variant 0.7
kasA 2517968 c.-147T>A upstream_gene_variant 0.47
kasA 2517974 c.-141T>C upstream_gene_variant 0.33
kasA 2517983 c.-132T>C upstream_gene_variant 0.18
kasA 2519176 c.1062G>A synonymous_variant 0.18
ahpC 2726105 c.-88G>A upstream_gene_variant 1.0
ahpC 2726561 c.369T>C synonymous_variant 0.43
ahpC 2726564 c.372C>T synonymous_variant 0.5
ahpC 2726576 c.384C>T synonymous_variant 0.55
ahpC 2726579 c.387T>C synonymous_variant 0.59
ahpC 2726582 c.390G>C synonymous_variant 0.64
ahpC 2726588 c.396C>T synonymous_variant 0.7
ahpC 2726593 p.Val134Ala missense_variant 0.7
ahpC 2726600 c.408T>C synonymous_variant 0.69
ahpC 2726604 p.Val138Ile missense_variant 0.71
ahpC 2726638 p.Ala149Val missense_variant 0.79
ahpC 2726651 c.459G>T synonymous_variant 0.76
ahpC 2726654 c.462G>C synonymous_variant 0.76
ahpC 2726657 c.465A>C synonymous_variant 0.76
ahpC 2726669 c.477T>C synonymous_variant 0.75
ahpC 2726675 c.483A>G synonymous_variant 0.78
ahpC 2726681 c.489A>T synonymous_variant 0.75
ahpC 2726684 c.492G>T synonymous_variant 0.78
ahpC 2726693 c.501C>A synonymous_variant 0.78
ahpC 2726696 c.504C>G synonymous_variant 0.74
ahpC 2726717 c.525A>C synonymous_variant 0.58
thyX 3067325 c.621A>G synonymous_variant 0.22
thyX 3067328 c.618G>C synonymous_variant 0.33
thyX 3067340 c.606G>A synonymous_variant 0.36
thyX 3067344 p.Ser201Thr missense_variant 0.36
thyX 3067349 c.597G>C synonymous_variant 0.36
thyX 3067355 p.Ala197Gly missense_variant 0.36
thyX 3067360 p.Ile196Val missense_variant 0.4
thyX 3067367 c.579G>A synonymous_variant 0.44
thyX 3067373 c.573C>G synonymous_variant 0.4
thyX 3067376 c.570G>C synonymous_variant 0.4
thyX 3067391 c.555G>C synonymous_variant 0.33
thyX 3067394 c.552G>C synonymous_variant 0.38
thyX 3067400 p.Arg182Lys missense_variant 0.38
thyX 3067429 p.Ala173Ser missense_variant 0.29
thyX 3067430 c.514_516delCGCinsAGG synonymous_variant 0.27
thyX 3067433 c.513C>G synonymous_variant 0.27
thyX 3067439 c.507A>G synonymous_variant 0.27
thyX 3067442 c.504C>G synonymous_variant 0.27
thyX 3067445 c.501C>A synonymous_variant 0.27
thyX 3068115 c.-170C>T upstream_gene_variant 0.17
thyA 3073935 c.537C>A synonymous_variant 0.17
thyA 3074645 c.-174T>G upstream_gene_variant 0.33
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473977 c.-30C>G upstream_gene_variant 0.17
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fbiA 3640368 c.-175A>G upstream_gene_variant 0.22
rpoA 3877545 c.963G>C synonymous_variant 0.13
rpoA 3877553 p.Glu319Gln missense_variant 0.4
rpoA 3877557 c.951C>G synonymous_variant 0.43
rpoA 3877560 c.948C>T synonymous_variant 0.5
rpoA 3877569 p.Pro313Ala missense_variant 0.56
rpoA 3877587 c.921A>G synonymous_variant 0.59
rpoA 3877593 c.915C>T synonymous_variant 0.59
rpoA 3877599 p.Gln303Thr missense_variant 0.59
rpoA 3877613 p.Ile299Val missense_variant 0.69
rpoA 3877629 c.879C>G synonymous_variant 0.73
rpoA 3877656 c.852T>C synonymous_variant 0.73
rpoA 3877662 c.846C>T synonymous_variant 0.7
rpoA 3877665 c.843C>T synonymous_variant 0.66
rpoA 3877668 c.840A>G synonymous_variant 0.65
rpoA 3877674 c.834C>T synonymous_variant 0.67
rpoA 3877680 c.828G>T synonymous_variant 0.67
rpoA 3877686 c.822A>G synonymous_variant 0.69
rpoA 3877692 c.816G>C synonymous_variant 0.68
rpoA 3877701 c.807G>C synonymous_variant 0.7
rpoA 3877704 c.804G>T synonymous_variant 0.7
rpoA 3877728 c.780C>G synonymous_variant 0.7
rpoA 3877731 c.777G>T synonymous_variant 0.69
rpoA 3877734 c.774G>C synonymous_variant 0.7
rpoA 3877737 c.771G>C synonymous_variant 0.71
rpoA 3877749 c.759C>T synonymous_variant 0.69
rpoA 3877752 p.Asp252Glu missense_variant 0.7
rpoA 3877765 p.Ala248Ser missense_variant 0.67
rpoA 3877770 c.738A>G synonymous_variant 0.65
rpoA 3877776 c.732T>C synonymous_variant 0.66
rpoA 3877782 c.726T>C synonymous_variant 0.65
rpoA 3877785 c.723C>T synonymous_variant 0.67
rpoA 3877791 c.717C>G synonymous_variant 0.64
rpoA 3877794 c.714G>T synonymous_variant 0.64
rpoA 3877815 c.693C>A synonymous_variant 0.65
rpoA 3877818 c.690A>G synonymous_variant 0.69
rpoA 3877821 c.687C>T synonymous_variant 0.65
rpoA 3877836 c.672A>G synonymous_variant 0.69
rpoA 3877842 c.666A>T synonymous_variant 0.67
rpoA 3877848 c.660C>T synonymous_variant 0.67
rpoA 3877856 c.652T>C synonymous_variant 0.62
rpoA 3877866 c.642G>C synonymous_variant 0.66
rpoA 3877875 c.633T>G synonymous_variant 0.61
rpoA 3877878 c.630G>C synonymous_variant 0.59
rpoA 3877887 c.621G>C synonymous_variant 0.56
rpoA 3877893 c.615C>T synonymous_variant 0.56
rpoA 3877896 p.Pro204Ala missense_variant 0.55
rpoA 3877905 c.603A>G synonymous_variant 0.5
rpoA 3877908 c.600T>C synonymous_variant 0.51
rpoA 3877920 c.588G>C synonymous_variant 0.5
rpoA 3877926 c.582G>C synonymous_variant 0.46
rpoA 3877929 p.Ile193Val missense_variant 0.46
rpoA 3877935 p.Lys191Arg missense_variant 0.47
rpoA 3877962 c.546G>C synonymous_variant 0.5
rpoA 3877971 p.Asp179Glu missense_variant 0.5
rpoA 3877986 c.522G>C synonymous_variant 0.32
rpoA 3877989 c.519A>G synonymous_variant 0.31
rpoA 3877992 c.516C>G synonymous_variant 0.31
rpoA 3878082 c.426T>G synonymous_variant 0.17
rpoA 3878102 p.Val136Ile missense_variant 0.19
rpoA 3878103 c.405A>G synonymous_variant 0.19
rpoA 3878106 c.402G>C synonymous_variant 0.18
rpoA 3878118 c.390T>C synonymous_variant 0.21
rpoA 3878127 c.381G>C synonymous_variant 0.24
rpoA 3878145 c.363C>G synonymous_variant 0.16
rpoA 3878169 c.339G>C synonymous_variant 0.24
rpoA 3878214 c.294C>T synonymous_variant 0.36
rpoA 3878217 p.Leu97Val missense_variant 0.36
rpoA 3878220 c.288C>T synonymous_variant 0.38
rpoA 3878244 c.264G>A synonymous_variant 0.37
rpoA 3878247 c.261G>C synonymous_variant 0.36
rpoA 3878251 c.256_257delTCinsAG synonymous_variant 0.38
rpoA 3878259 c.249G>C synonymous_variant 0.36
rpoA 3878264 p.Ser82Gly missense_variant 0.36
rpoA 3878271 c.237T>C synonymous_variant 0.33
rpoA 3878283 p.Glu75Asp missense_variant 0.33
rpoA 3878298 c.210A>G synonymous_variant 0.27
rpoA 3878301 c.207C>G synonymous_variant 0.27
rpoA 3878304 c.204G>C synonymous_variant 0.24
rpoA 3878310 c.198G>C synonymous_variant 0.23
rpoA 3878313 c.195G>C synonymous_variant 0.23
rpoA 3878322 c.186A>G synonymous_variant 0.21
rpoA 3878331 c.177A>T synonymous_variant 0.17
clpC1 4038359 c.2346A>G synonymous_variant 0.24
clpC1 4038383 c.2322G>T synonymous_variant 0.22
clpC1 4038388 c.2317T>C synonymous_variant 0.22
clpC1 4038395 c.2310C>G synonymous_variant 0.2
clpC1 4038403 c.2302T>C synonymous_variant 0.18
clpC1 4038404 c.2301G>T synonymous_variant 0.18
clpC1 4038410 c.2295C>T synonymous_variant 0.18
clpC1 4038416 c.2289C>G synonymous_variant 0.19
clpC1 4038623 c.2082A>G synonymous_variant 0.17
clpC1 4038710 c.1995G>C synonymous_variant 0.22
clpC1 4038713 c.1992T>C synonymous_variant 0.3
clpC1 4038725 c.1980C>G synonymous_variant 0.61
clpC1 4038740 c.1965G>C synonymous_variant 0.61
clpC1 4038743 c.1962G>C synonymous_variant 0.61
clpC1 4038746 c.1959C>T synonymous_variant 0.64
clpC1 4038749 c.1956C>T synonymous_variant 0.72
clpC1 4038755 c.1950G>C synonymous_variant 0.71
clpC1 4038767 c.1938G>T synonymous_variant 0.76
clpC1 4038770 c.1935C>A synonymous_variant 0.76
clpC1 4038773 c.1932T>C synonymous_variant 0.8
clpC1 4038782 c.1923G>C synonymous_variant 0.81
clpC1 4038790 c.1915C>T synonymous_variant 0.83
clpC1 4038795 p.Ser637Thr missense_variant 0.84
clpC1 4038810 p.Gln632Ser missense_variant 0.82
clpC1 4038812 c.1893T>C synonymous_variant 0.82
clpC1 4038815 c.1890G>A synonymous_variant 0.85
clpC1 4038839 c.1866G>C synonymous_variant 0.86
clpC1 4038860 c.1845G>C synonymous_variant 0.86
clpC1 4038878 c.1827A>G synonymous_variant 0.82
clpC1 4038890 c.1815G>A synonymous_variant 0.81
clpC1 4038902 c.1803C>T synonymous_variant 0.81
clpC1 4038911 c.1794G>T synonymous_variant 0.81
clpC1 4038917 c.1788C>T synonymous_variant 0.83
clpC1 4038923 c.1782A>G synonymous_variant 0.8
clpC1 4038926 c.1779G>T synonymous_variant 0.79
clpC1 4038941 c.1764G>C synonymous_variant 0.78
clpC1 4038953 c.1752A>G synonymous_variant 0.78
clpC1 4038956 c.1749T>C synonymous_variant 0.78
clpC1 4038965 c.1740T>C synonymous_variant 0.76
clpC1 4038971 c.1734T>C synonymous_variant 0.77
clpC1 4038974 c.1731T>C synonymous_variant 0.77
clpC1 4038986 p.Asp573Glu missense_variant 0.78
clpC1 4038989 c.1716T>C synonymous_variant 0.78
clpC1 4038997 c.1708T>C synonymous_variant 0.79
clpC1 4039007 c.1698G>C synonymous_variant 0.79
clpC1 4039019 c.1686G>C synonymous_variant 0.77
clpC1 4039022 c.1683A>G synonymous_variant 0.78
clpC1 4039079 c.1626C>G synonymous_variant 0.82
clpC1 4039085 c.1620A>G synonymous_variant 0.8
clpC1 4039090 c.1615C>T synonymous_variant 0.8
clpC1 4039097 c.1608G>C synonymous_variant 0.79
clpC1 4039106 c.1599G>T synonymous_variant 0.78
clpC1 4039112 c.1593C>G synonymous_variant 0.78
clpC1 4039118 c.1587C>G synonymous_variant 0.77
clpC1 4039121 c.1584T>G synonymous_variant 0.77
clpC1 4039133 c.1572C>G synonymous_variant 0.75
clpC1 4039139 c.1566G>A synonymous_variant 0.73
clpC1 4039142 c.1563A>G synonymous_variant 0.73
clpC1 4039145 c.1560G>C synonymous_variant 0.73
clpC1 4039169 p.Glu512Asp missense_variant 0.71
clpC1 4039172 c.1533A>G synonymous_variant 0.7
clpC1 4039178 c.1527G>C synonymous_variant 0.67
clpC1 4039181 c.1522_1524delTTGinsCTC synonymous_variant 0.65
clpC1 4039187 c.1518G>T synonymous_variant 0.66
clpC1 4039199 p.Ala502Glu missense_variant 0.65
clpC1 4039220 c.1485G>C synonymous_variant 0.6
clpC1 4039226 c.1479T>C synonymous_variant 0.53
clpC1 4039241 c.1464G>C synonymous_variant 0.46
clpC1 4039244 c.1461G>T synonymous_variant 0.44
clpC1 4039361 c.1344C>G synonymous_variant 0.23
clpC1 4039382 c.1323C>G synonymous_variant 0.3
clpC1 4039391 c.1314T>G synonymous_variant 0.29
clpC1 4039394 c.1309_1311delTCGinsAGC synonymous_variant 0.27
clpC1 4039407 p.Arg433Lys missense_variant 0.26
clpC1 4039409 c.1296T>C synonymous_variant 0.26
clpC1 4039412 c.1293T>G synonymous_variant 0.27
clpC1 4039415 p.Glu430Asp missense_variant 0.27
clpC1 4039424 p.Lys427Arg missense_variant 0.26
clpC1 4039430 c.1275T>C synonymous_variant 0.25
clpC1 4039442 c.1263A>G synonymous_variant 0.26
clpC1 4039463 c.1242C>G synonymous_variant 0.24
clpC1 4039466 c.1239T>C synonymous_variant 0.24
clpC1 4039469 c.1236T>C synonymous_variant 0.24
clpC1 4039472 c.1233G>C synonymous_variant 0.25
clpC1 4039478 c.1227G>C synonymous_variant 0.29
clpC1 4039481 c.1224T>G synonymous_variant 0.27
clpC1 4039484 c.1221T>C synonymous_variant 0.26
clpC1 4039487 c.1218G>A synonymous_variant 0.27
clpC1 4039499 c.1206G>C synonymous_variant 0.33
clpC1 4039526 c.1179G>C synonymous_variant 0.34
clpC1 4039541 c.1164C>G synonymous_variant 0.34
clpC1 4039544 c.1161C>T synonymous_variant 0.36
clpC1 4039550 c.1155G>T synonymous_variant 0.36
clpC1 4039556 c.1149G>A synonymous_variant 0.37
clpC1 4039559 c.1146C>G synonymous_variant 0.38
clpC1 4039562 c.1143C>T synonymous_variant 0.37
clpC1 4039565 c.1140G>C synonymous_variant 0.36
clpC1 4039568 p.Met379Leu missense_variant 0.36
clpC1 4039571 c.1134G>T synonymous_variant 0.36
clpC1 4039574 p.Ala377Gly missense_variant 0.37
clpC1 4039577 c.1128T>C synonymous_variant 0.37
clpC1 4039586 c.1119G>C synonymous_variant 0.47
clpC1 4039592 c.1113G>C synonymous_variant 0.49
clpC1 4039603 p.Ala368Thr missense_variant 0.69
clpC1 4039610 c.1095G>C synonymous_variant 0.7
clpC1 4039616 c.1089G>C synonymous_variant 0.74
clpC1 4039622 c.1083C>T synonymous_variant 0.74
clpC1 4039654 p.Thr351Ser missense_variant 0.66
clpC1 4039661 c.1044T>C synonymous_variant 0.61
clpC1 4039664 c.1041G>C synonymous_variant 0.59
clpC1 4039685 c.1020C>T synonymous_variant 0.64
clpC1 4039691 c.1014G>C synonymous_variant 0.64
clpC1 4039694 c.1011G>A synonymous_variant 0.62
clpC1 4039697 c.1008C>A synonymous_variant 0.66
clpC1 4039721 c.984C>T synonymous_variant 0.68
clpC1 4039724 c.981A>G synonymous_variant 0.68
clpC1 4039742 c.963C>T synonymous_variant 0.67
clpC1 4039748 c.957G>C synonymous_variant 0.58
clpC1 4039751 c.954A>G synonymous_variant 0.57
clpC1 4039757 c.948A>G synonymous_variant 0.54
clpC1 4039760 c.945T>C synonymous_variant 0.52
clpC1 4039766 c.939T>C synonymous_variant 0.48
clpC1 4039769 c.936C>G synonymous_variant 0.48
clpC1 4039778 c.927A>G synonymous_variant 0.48
clpC1 4039781 c.924G>C synonymous_variant 0.48
clpC1 4039787 c.916_918delTCGinsAGC synonymous_variant 0.35
clpC1 4039790 c.915C>G synonymous_variant 0.35
clpC1 4039793 c.912C>G synonymous_variant 0.38
clpC1 4039802 c.903G>A synonymous_variant 0.47
clpC1 4039811 c.894C>A synonymous_variant 0.57
clpC1 4039817 c.888A>T synonymous_variant 0.57
clpC1 4039820 c.885T>C synonymous_variant 0.57
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.57
clpC1 4039832 c.873C>A synonymous_variant 0.57
clpC1 4039850 c.855T>C synonymous_variant 0.59
clpC1 4039865 c.840T>C synonymous_variant 0.74
clpC1 4039889 c.816G>C synonymous_variant 0.67
clpC1 4039916 c.789T>C synonymous_variant 0.7
clpC1 4039925 c.780C>T synonymous_variant 0.63
clpC1 4039931 c.774T>C synonymous_variant 0.63
clpC1 4039934 c.771G>A synonymous_variant 0.63
clpC1 4039937 c.768G>T synonymous_variant 0.63
clpC1 4039946 c.759A>T synonymous_variant 0.63
clpC1 4039949 c.756G>C synonymous_variant 0.62
clpC1 4039952 c.753T>C synonymous_variant 0.57
clpC1 4039955 c.750G>C synonymous_variant 0.53
clpC1 4039996 p.Glu237Gln missense_variant 0.59
clpC1 4040002 p.His235Asn missense_variant 0.56
clpC1 4040003 c.702G>C synonymous_variant 0.56
clpC1 4040018 c.687G>C synonymous_variant 0.53
clpC1 4040021 c.684A>T synonymous_variant 0.52
clpC1 4040024 c.681A>G synonymous_variant 0.5
clpC1 4040033 c.672G>C synonymous_variant 0.56
clpC1 4040062 p.Ile215Val missense_variant 0.6
clpC1 4040066 c.639G>T synonymous_variant 0.39
clpC1 4040069 c.636G>T synonymous_variant 0.4
clpC1 4040087 c.618G>C synonymous_variant 0.36
clpC1 4040117 c.588A>G synonymous_variant 0.27
clpC1 4040120 c.585G>A synonymous_variant 0.26
clpC1 4040129 c.576C>G synonymous_variant 0.19
clpC1 4040279 c.426C>G synonymous_variant 0.24
clpC1 4040282 c.423G>C synonymous_variant 0.28
clpC1 4040291 c.414G>C synonymous_variant 0.38
clpC1 4040303 c.402G>C synonymous_variant 0.38
clpC1 4040310 p.Thr132Asn missense_variant 0.42
clpC1 4040312 c.393G>C synonymous_variant 0.42
clpC1 4040315 p.Glu130Asp missense_variant 0.42
clpC1 4040324 c.381G>C synonymous_variant 0.42
clpC1 4040336 c.369G>T synonymous_variant 0.38
clpC1 4040342 c.363C>G synonymous_variant 0.41
clpC1 4040348 c.357G>T synonymous_variant 0.41
clpC1 4040354 c.351A>G synonymous_variant 0.39
clpC1 4040357 c.348T>C synonymous_variant 0.42
clpC1 4040363 c.342A>C synonymous_variant 0.45
clpC1 4040375 c.330G>C synonymous_variant 0.49
clpC1 4040380 c.325T>C synonymous_variant 0.47
clpC1 4040381 c.324T>C synonymous_variant 0.47
clpC1 4040387 c.318A>G synonymous_variant 0.6
clpC1 4040393 c.312G>C synonymous_variant 0.62
clpC1 4040411 c.294T>C synonymous_variant 0.75
clpC1 4040431 c.274T>C synonymous_variant 0.72
clpC1 4040432 c.271_273delAGCinsTCG synonymous_variant 0.7
clpC1 4040437 c.268C>T synonymous_variant 0.71
clpC1 4040450 c.255A>G synonymous_variant 0.77
clpC1 4040456 c.249C>T synonymous_variant 0.75
clpC1 4040459 c.246C>G synonymous_variant 0.75
clpC1 4040462 c.243C>G synonymous_variant 0.75
clpC1 4040465 c.240T>C synonymous_variant 0.75
clpC1 4040471 c.234T>C synonymous_variant 0.76
clpC1 4040480 c.225T>G synonymous_variant 0.78
clpC1 4040495 c.210C>T synonymous_variant 0.8
clpC1 4040522 c.183T>C synonymous_variant 0.8
clpC1 4040528 c.177G>C synonymous_variant 0.8
clpC1 4040531 c.174T>C synonymous_variant 0.79
clpC1 4040534 c.171A>G synonymous_variant 0.79
clpC1 4040537 c.168G>C synonymous_variant 0.81
clpC1 4040540 c.165G>C synonymous_variant 0.76
clpC1 4040551 c.154T>C synonymous_variant 0.67
clpC1 4040552 c.153G>T synonymous_variant 0.67
clpC1 4040563 p.Ser48Ala missense_variant 0.6
clpC1 4040579 c.126A>G synonymous_variant 0.56
clpC1 4040582 c.123G>T synonymous_variant 0.56
clpC1 4040585 c.120A>G synonymous_variant 0.51
clpC1 4040588 c.117T>C synonymous_variant 0.51
clpC1 4040597 c.108C>T synonymous_variant 0.5
clpC1 4040600 c.103_105delTTAinsCTG synonymous_variant 0.5
clpC1 4040603 c.102T>C synonymous_variant 0.49
clpC1 4040606 c.99T>C synonymous_variant 0.5
clpC1 4040644 c.61A>C synonymous_variant 0.41
clpC1 4040645 c.60C>G synonymous_variant 0.39
clpC1 4040654 c.51G>A synonymous_variant 0.33
clpC1 4040657 c.48T>C synonymous_variant 0.28
clpC1 4040663 c.42C>T synonymous_variant 0.18
embC 4241689 c.1827G>A synonymous_variant 0.29
embC 4242075 p.Arg738Gln missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4244137 p.Ala302Val missense_variant 0.17
embB 4246094 c.-420C>T upstream_gene_variant 0.14
aftB 4267096 p.Pro581Thr missense_variant 0.15
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4408380 c.-178G>A upstream_gene_variant 0.2