Rv0005 - c.1687T>C
Drug resistance types
6 Sensitive
4 RR-TB
20 HR-TB
12 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
11 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2 | 1 |
| lineage2.2.1 | 11 |
| lineage4.9 | 18 |
| La1.7;M.canetti;lineage4.9 | 2 |
| M.canetti;lineage4.9 | 4 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.7;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La2;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage1.1.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| La1.2.BCG | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 1 |
| lineage3 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La2;lineage2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 54 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR6480366 | Sensitive | lineage2.2.1 | None | SRR6046593 | Other | lineage4.9 | None | ERR752015 | HR-TB | lineage2.2.1 | th | ERR124636 | HR-TB | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR16058010 | Sensitive | lineage2.2.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR25207218 | MDR-TB | lineage2.2.1 | None | ERR2026697 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR28046085 | MDR-TB | lineage2.2.1 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR4810645 | Sensitive | lineage2.2.1 | cn | SRR6930898 | HR-TB | lineage2.2.1 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | ERR2026698 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR23961558 | RR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR14066533 | RR-TB | lineage1.1.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR6046485 | Other | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR6866807 | RR-TB | lineage4.9 | None | ERR4797474 | Other | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | SRR25207229 | MDR-TB | lineage2.2.1 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR1063855 | Other | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR6511621 | HR-TB | lineage4.9 | None | SRR5217409 | Sensitive | lineage2.2.1 | None | ERR4769450 | Other | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR22251525 | Sensitive | lineage2.2.1 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None |
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