Rv3596c - c.874_876delTTGinsCC
Drug resistance types
22 Sensitive
21 RR-TB
94 HR-TB
18 MDR-TB
11 Pre-XDR-TB
0 XDR-TB
58 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage2.2.1 | 19 |
| lineage4.9 | 116 |
| lineage4.4.2 | 2 |
| lineage4.8 | 5 |
| lineage2.2.1.1 | 1 |
| lineage3 | 6 |
| lineage3.1.3 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.3.2.1 | 3 |
| lineage4.4 | 1 |
| lineage4.3;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.6.1.2 | 3 |
| lineage1;lineage4.9 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La1;lineage4.9 | 2 |
| lineage4 | 4 |
| lineage4.1.3 | 1 |
| lineage4.2.1 | 2 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.3.3 | 3 |
| La1.2.BCG | 1 |
| La1.7;lineage4.9 | 3 |
| 4 | |
| lineage4.3.4 | 1 |
| lineage4.8;lineage4.9 | 2 |
| La1.8.1 | 2 |
| La1.7.1 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.2.2.2 | 1 |
| La1.7;lineage4.9;lineage7 | 2 |
| La1;lineage2;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage2.2.2 | 1 |
| lineage1.2.2.2 | 1 |
| La1.3 | 2 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.4.1.1 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.7 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage3.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.1.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage1.1.1 | 1 |
| lineage4.3 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.4.1.1.1 | 1 |
| La1;lineage4.1.2 | 1 |
| La1.4 | 1 |
| lineage1.1.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 224 |
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR6045795 | Other | lineage2.2.1 | None | ERR137286 | Other | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR2693252 | HR-TB | lineage4.9 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR18909918 | Other | lineage2.2.1.1 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | ERR736848 | Other | lineage4.9 | None | ERR926157 | Other | lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR323066 | HR-TB | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR5341308 | HR-TB | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR6511621 | HR-TB | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR1035122 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | SRR3675585 | HR-TB | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR4821334 | Other | lineage4.1.3 | None | ERR751326 | Other | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | ERR4815471 | HR-TB | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | SRR10809074 | HR-TB | lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR6044875 | Other | lineage4.9 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184329 | Other | lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR5341467 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR1023509 | MDR-TB | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR1915487 | Other | La1.2.BCG | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR6045359 | HR-TB | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | ERR4817069 | RR-TB | None | ERR4796577 | HR-TB | None | ERR779852 | HR-TB | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4819357 | Sensitive | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR4798099 | HR-TB | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | ERR4816964 | HR-TB | lineage4.9 | None | SRR11462861 | Other | La1.8.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR6866639 | HR-TB | lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR926156 | Other | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR6045555 | Other | lineage4.9 | None | SRR5341313 | Other | La1.7;lineage4.9;lineage7 | None | ERR067699 | HR-TB | La1;lineage2;lineage4.9 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR181887 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR4798823 | HR-TB | lineage4 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR502473 | RR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR323062 | HR-TB | lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | SRR3675235 | HR-TB | lineage4.9 | None | ERR4769495 | Other | La1.3 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR5341453 | Other | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR4819546 | HR-TB | lineage3 | None | ERR926164 | Other | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR6045191 | Sensitive | lineage4.9 | None | ERR502510 | HR-TB | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR926155 | Other | lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | ERR971389 | Other | lineage4.9 | None | ERR1063896 | HR-TB | None | SRR28351442 | HR-TB | lineage3.1 | None | SRR10315558 | RR-TB | lineage2.2.1 | None | ERR3797029 | Other | lineage4.9 | None | ERR4797474 | Other | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR6044952 | Other | lineage4.9 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4818252 | HR-TB | lineage4.1.1.2 | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | ERR4769408 | Other | La1.3 | None | ERR702405 | HR-TB | lineage4.9 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR926165 | Other | lineage4.9 | None | ERR6866410 | HR-TB | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819314 | HR-TB | lineage1.1.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR124636 | HR-TB | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR926160 | Other | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR7496471 | Sensitive | lineage4 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR3445502 | HR-TB | lineage4.9;lineage7 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR14801759 | MDR-TB | La1.7;lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR323107 | HR-TB | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR867567 | RR-TB | lineage3 | None | ERR6359069 | HR-TB | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR4797184 | HR-TB | lineage4.9 | None | ERR2432997 | Other | lineage4.8 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR16278274 | Other | La1.4 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1180446 | Other | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR736856 | HR-TB | lineage4.9 | None | ERR502511 | HR-TB | lineage4.9 | None | ERR181824 | MDR-TB | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR212001 | HR-TB | None |
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