Rv3596c - c.874_876delTTGinsCC


Drug resistance types
22 Sensitive 21 RR-TB 94 HR-TB 18 MDR-TB 11 Pre-XDR-TB 0 XDR-TB 58 Other
lineage Counts
lineage Count
lineage4.9 116
lineage4.3.3 3
lineage4.8 5
lineage3 6
lineage4.4.1.1 2
La1;lineage4.9 2
lineage4.4.1.1.1 1
lineage4.3.4.2.1 2
La1.4 1
lineage4.8;lineage4.9 2
lineage4.1.1.3.1 1
lineage4.1.2.1;lineage4.4.1 1
lineage2.2.1 19
lineage4.3.4.2 1
lineage4.1.2 1
lineage3.1.2.1 1
lineage4.2.2.2 1
lineage1.1.1 1
lineage4.3 1
lineage2.2;lineage4 1
La1;lineage2;lineage4.9 1
lineage4.3.2.1 3
lineage4 4
lineage1.1.2 1
lineage4.6.1.2 3
lineage4.1.1.3 1
La1.7;lineage4.9 3
4
lineage3.1 1
lineage4.4.2 2
lineage2.2;lineage4.9 1
La1.7;lineage4.9;lineage7 2
La1.7;lineage3.1;lineage4 1
lineage1;lineage4.9 1
La1.7.1;La1.7.X-unk4 1
lineage2.2.2 1
lineage2.1;lineage4.1.4;lineage4.9 1
lineage1.2.2.2 1
lineage4.1.3 1
La1.7.1;lineage4.9 1
lineage4.1.2.1;lineage4.4.1.1 1
La1.7.1;La1.7.X-unk4;lineage7 1
La1;lineage4.1.2 1
lineage4.4.1.2 1
La1.2.BCG 1
lineage4.7 1
lineage1.1.3.1 1
lineage4.1.1.2 1
lineage4.3.4 1
La1.3 2
La1.8.1 2
La1.7.1 1
La3;M.canetti;lineage4.9 1
lineage2.2.1.1 1
lineage3.1.3 1
lineage4.4 1
lineage4.3;lineage4.9 1
lineage4.2.1 2
lineage4.9;lineage7 1
spoligotype Counts
spoligotype Count
None 224
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR108471 HR-TB lineage4.9 None
ERR4596910 Sensitive lineage4.9 None
SRR12708409 HR-TB lineage4.3.3 None
SRR5341453 Other lineage4.9 None
ERR4813263 MDR-TB lineage4.8 None
ERR867567 RR-TB lineage3 None
ERR6359069 HR-TB lineage4.9 None
ERR2446154 Sensitive lineage4.4.1.1 nl
ERR3797062 RR-TB lineage4.9 None
ERR133825 HR-TB La1;lineage4.9 None
SRR11342696 MDR-TB lineage4.4.1.1.1 None
SRR3675246 Other lineage4.9 None
ERR4797184 HR-TB lineage4.9 None
SRR1184329 Other lineage4.9 None
ERR2432997 Other lineage4.8 None
SRR5341467 Other lineage4.9 None
ERR323044 HR-TB lineage4.3.4.2.1 None
SRR6045191 Sensitive lineage4.9 None
SRR16278274 Other La1.4 None
ERR502510 HR-TB lineage4.9 None
SRR6045892 Sensitive lineage4.9 None
SRR1180446 Other lineage4.9 None
ERR736834 HR-TB lineage4.9 None
ERR6866022 HR-TB lineage4.8;lineage4.9 None
ERR4796929 Sensitive lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
ERR926155 Other lineage4.9 None
ERR4819863 RR-TB lineage4.9 None
ERR473334 HR-TB lineage4.9 None
SRR7070157 Other lineage4.1.1.3.1 None
SRR6045359 HR-TB lineage4.9 None
SRR1049725 Other lineage4.1.2.1;lineage4.4.1 None
SRR10315558 RR-TB lineage2.2.1 None
ERR4797474 Other lineage4.9 None
SRR12708418 HR-TB lineage2.2.1 None
ERR4831616 MDR-TB lineage2.2.1 None
SRR11342673 RR-TB lineage4.3.4.2 None
ERR6359070 Sensitive lineage4.9 None
ERR2693252 HR-TB lineage4.9 None
ERR4816964 HR-TB lineage4.9 None
SRR9970980 HR-TB lineage4.1.2 None
ERR4816717 RR-TB lineage3.1.2.1 None
ERR926165 Other lineage4.9 None
SRR11342687 RR-TB lineage4.2.2.2 None
ERR926156 Other lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
ERR4819314 HR-TB lineage1.1.1 None
ERR3275941 RR-TB lineage4.3 nl
SRR16156832 RR-TB lineage2.2;lineage4 None
ERR067712 Sensitive lineage4.9 None
ERR067699 HR-TB La1;lineage2;lineage4.9 None
SRR12708407 HR-TB lineage4.3.2.1 None
ERR3275709 HR-TB lineage3 nl
ERR4816762 Sensitive lineage4.9 None
ERR4818561 Sensitive lineage4.9 None
SRR10315751 MDR-TB lineage4.8 None
ERR4798823 HR-TB lineage4 None
SRR5341310 Other lineage1.1.2 None
SRR14801749 HR-TB lineage4.9 None
ERR323066 HR-TB lineage4.9 None
SRR6045219 HR-TB lineage4.9 None
ERR124636 HR-TB lineage4.9 None
SRR12708399 MDR-TB lineage4.3.4.2.1 None
SAMN02380990 MDR-TB lineage4.6.1.2 None
ERR926160 Other lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR12708413 HR-TB lineage4.1.1.3 None
ERR323107 HR-TB lineage4.9 None
SRR12708396 MDR-TB lineage4.3.2.1 None
SRR9971112 HR-TB lineage2.2.1 None
SRR10809074 HR-TB lineage4.9 None
SRR3618864 Pre-XDR-TB lineage2.2.1 None
SRR3619841 Pre-XDR-TB lineage2.2.1 None
ERR3283040 HR-TB lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
SRR1140712 MDR-TB lineage4.6.1.2 None
SRR1062919 HR-TB lineage2.2.1 None
ERR3283006 RR-TB lineage4.9 None
SRR5341412 Pre-XDR-TB lineage3 None
ERR4815815 Sensitive lineage4.9 None
ERR502511 HR-TB lineage4.9 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
SRR6045053 Other lineage4 None
ERR4817069 RR-TB None
SRR28351442 HR-TB lineage3.1 None
ERR4796577 HR-TB None
ERR137286 Other lineage4.9 None
ERR176651 Other lineage4.9 None
SRR1181403 Other lineage4.9 None
ERR4769417 Pre-XDR-TB lineage4.9 None
SRR11342649 MDR-TB lineage4.3.3 None
ERR4819357 Sensitive lineage4.9 None
SRR6046046 Other lineage4.9 None
ERR4798099 HR-TB lineage4.9 None
ERR702405 HR-TB lineage4.9 None
SRR15316595 RR-TB lineage4.4.2 None
ERR4188247 HR-TB lineage4.9 None
SRR1140724 Other lineage2.2.1 None
ERR4817667 HR-TB lineage4.8 None
ERR6866410 HR-TB lineage4.9 None
ERR926162 Sensitive lineage4.9 None
ERR4815550 Other lineage2.2;lineage4.9 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
ERR181887 Other lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
ERR736837 Pre-XDR-TB lineage4.9 None
SRR6046593 Other lineage4.9 None
SRR20969542 Other lineage4.4.2 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
SRR12708414 HR-TB lineage2.2.1 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR10315567 HR-TB lineage2.2.1 None
SRR12708370 Pre-XDR-TB lineage2.2.2 None
ERR502473 RR-TB lineage4.9 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
ERR502478 RR-TB lineage4.9 None
SRR12708411 HR-TB lineage1.2.2.2 None
SRR6511621 HR-TB lineage4.9 None
ERR4814639 HR-TB lineage4.9 None
ERR1035122 HR-TB lineage4.9 None
ERR323062 HR-TB lineage4.9 None
SRR3675585 HR-TB lineage4.9 None
SRR5341387 Other lineage4.9 None
ERR4821334 Other lineage4.1.3 None
ERR751326 Other lineage4.9 None
SRR3675235 HR-TB lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR4829530 Pre-XDR-TB lineage4.8 None
ERR4815471 HR-TB lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
ERR502474 RR-TB lineage4.9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR1049726 Other lineage4.1.2.1;lineage4.4.1.1 None
SRR12416842 HR-TB lineage4.9 None
SRR6044875 Other lineage4.9 None
ERR4819546 HR-TB lineage3 None
ERR926164 Other lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR21677886 Sensitive lineage4.9 None
SRR9970978 Other La1;lineage4.1.2 None
ERR3275615 Sensitive lineage4.4.1.1 nl
SRR12708392 Other lineage2.2.1 None
ERR502470 RR-TB lineage4.9 None
SRR1062880 MDR-TB lineage4.6.1.2 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR212125 HR-TB lineage4.9 None
ERR1023509 MDR-TB lineage4.9 None
SRR12708419 Other lineage4.3.3 None
ERR1034634 HR-TB lineage4.9 None
SRR6046485 Other lineage4.9 None
SRR1915487 Other La1.2.BCG None
SRR7496523 Other lineage4.7 None
SRR5341469 HR-TB lineage4.9 None
ERR926161 Sensitive lineage4.9 None
ERR736856 HR-TB lineage4.9 None
ERR971389 Other lineage4.9 None
ERR181824 MDR-TB lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
ERR1063896 HR-TB None
ERR212001 HR-TB None
SRR6045795 Other lineage2.2.1 None
ERR3797029 Other lineage4.9 None
ERR4818710 Sensitive lineage4.9 None
SRR6044952 Other lineage4.9 None
ERR4797264 HR-TB lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR779852 HR-TB lineage4.9 None
ERR4821172 RR-TB lineage4.9 None
ERR4818252 HR-TB lineage4.1.1.2 None
SRR20632814 Sensitive lineage4.9 None
ERR736817 HR-TB lineage4.3.4 None
ERR4024991 HR-TB lineage4.8;lineage4.9 None
ERR4769493 Other lineage4.9 None
SRR1180440 Other lineage4.9 None
ERR4769408 Other La1.3 None
SRR1181256 Other lineage4.9 None
ERR502481 RR-TB lineage4.9 None
SRR16156697 RR-TB lineage2.2.1 None
SRR11462861 Other La1.8.1 None
SRR11972425 Pre-XDR-TB lineage2.2.1 None
SRR1792478 HR-TB La1.7.1 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR1791747 Other La1.8.1 None
ERR6866639 HR-TB lineage4.9 None
SRR18909918 Other lineage2.2.1.1 None
ERR4596902 MDR-TB lineage3 None
ERR4831617 MDR-TB lineage2.2.1 None
SRR18913742 Sensitive lineage3.1.3 None
ERR736848 Other lineage4.9 None
ERR926157 Other lineage4.9 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR5341300 HR-TB lineage4.9 None
SRR6045555 Other lineage4.9 None
ERR323115 Sensitive lineage4.9 None
SRR7755645 Pre-XDR-TB lineage2.2.1 None
ERR4816729 Sensitive lineage4.9 None
SRR16627752 RR-TB lineage4.4 None
SRR12708415 HR-TB lineage2.2.1 None
SRR6046133 HR-TB lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
SRR16156817 Other lineage4.9 None
ERR036207 Other lineage4.3;lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR176778 HR-TB lineage4.9 None
ERR4816470 HR-TB lineage3 None
SRR7496471 Sensitive lineage4 None
SRR7755649 MDR-TB lineage4.2.1 None
SRR10808805 Other La1;lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
ERR736875 HR-TB lineage4.9 None
ERR3273109 HR-TB lineage4 None
SRR6046210 Other lineage4.9 None
ERR4769495 Other La1.3 None
ERR3445502 HR-TB lineage4.9;lineage7 None
ERR176779 HR-TB lineage4.9 None
ERR867541 MDR-TB lineage4.2.1 None
SRR14801759 MDR-TB La1.7;lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
ERR926159 Sensitive lineage4.9 None