TB-Profiler result

Run: SRR1184329
Summary

Run ID: SRR1184329

Sample name:

Date: 03-04-2023 05:19:08

Number of reads: 93689

Percentage reads mapped: 4.92

Strain: lineage4.9

Drug-resistance: MDR-TB

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.98
lineage4.9 Euro-American (H37Rv-like) T1 None 0.97
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 0.89 rifampicin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.99 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.99 kanamycin, capreomycin, aminoglycosides, amikacin
katG 2155693 p.Ser140Asn missense_variant 1.0 isoniazid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7386 p.Ile29Leu missense_variant 0.89
gyrA 7394 c.93T>C synonymous_variant 0.89
gyrA 7415 c.114C>G synonymous_variant 0.8
gyrA 7427 c.126G>C synonymous_variant 0.8
gyrA 7430 p.Glu43Asp missense_variant 0.8
gyrA 7442 c.141G>C synonymous_variant 0.89
gyrA 7445 c.144C>G synonymous_variant 0.88
gyrA 7457 c.156T>C synonymous_variant 0.88
gyrA 7814 c.513C>G synonymous_variant 0.5
gyrA 7825 p.Ala175Val missense_variant 0.5
gyrA 7832 c.531G>A synonymous_variant 0.4
gyrA 7835 c.534A>C synonymous_variant 0.4
gyrA 7837 p.Gly179Val missense_variant 0.4
gyrA 7859 c.558A>C synonymous_variant 0.57
gyrA 7862 c.561C>G synonymous_variant 0.57
gyrA 7865 c.564T>C synonymous_variant 0.57
gyrA 7890 p.Leu197Val missense_variant 0.67
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 760167 p.Met121Phe missense_variant 0.5
rpoB 760178 c.372G>C synonymous_variant 0.5
rpoB 760181 c.375T>G synonymous_variant 0.5
rpoB 760184 c.378A>G synonymous_variant 0.67
rpoB 760187 c.381G>C synonymous_variant 0.67
rpoB 760199 c.393C>G synonymous_variant 0.33
rpoB 760206 p.Ile134Val missense_variant 0.33
rpoB 760212 p.Asn136His missense_variant 0.5
rpoB 760215 p.Asn137Gln missense_variant 0.33
rpoB 760220 c.414C>G synonymous_variant 0.56
rpoB 760234 p.Ser143Thr missense_variant 0.6
rpoB 760253 c.447T>C synonymous_variant 0.7
rpoB 760263 p.Met153Leu missense_variant 0.75
rpoB 760266 p.Met154Gln missense_variant 0.75
rpoB 760274 p.Glu156Asp missense_variant 0.75
rpoB 760298 c.492G>C synonymous_variant 0.86
rpoB 760310 c.504G>C synonymous_variant 0.8
rpoB 760916 c.1110C>T synonymous_variant 0.8
rpoB 760920 p.Leu372Ile missense_variant 0.8
rpoB 760925 c.1119T>C synonymous_variant 0.8
rpoB 760926 p.Thr374Ala missense_variant 0.8
rpoB 760946 c.1140A>G synonymous_variant 0.91
rpoB 760953 p.Ile383Val missense_variant 1.0
rpoB 760955 c.1151_1152insCACG frameshift_variant 1.0
rpoB 760961 c.1156_1159delGGCA frameshift_variant 1.0
rpoB 760973 c.1167G>C synonymous_variant 1.0
rpoB 760982 c.1176G>C synonymous_variant 1.0
rpoB 760985 c.1179G>C synonymous_variant 1.0
rpoB 760991 c.1185G>C synonymous_variant 1.0
rpoB 760997 c.1191G>C synonymous_variant 1.0
rpoB 761006 c.1200C>G synonymous_variant 1.0
rpoB 761013 p.Val403Ile missense_variant 1.0
rpoB 761027 c.1221A>G synonymous_variant 1.0
rpoB 761036 c.1230G>C synonymous_variant 1.0
rpoB 761037 c.1231T>C synonymous_variant 1.0
rpoB 761046 p.Ile414Val missense_variant 1.0
rpoB 761051 c.1245G>C synonymous_variant 0.93
rpoB 761054 c.1248G>C synonymous_variant 0.93
rpoB 761057 c.1251G>C synonymous_variant 0.93
rpoB 761060 c.1254C>G synonymous_variant 0.94
rpoB 761087 c.1281C>G synonymous_variant 0.8
rpoB 761088 c.1282_1284delAGCinsTCG synonymous_variant 0.8
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.8
rpoB 761102 c.1296A>G synonymous_variant 0.8
rpoB 761126 c.1320G>C synonymous_variant 0.89
rpoB 761132 c.1326G>C synonymous_variant 0.89
rpoB 761133 c.1327T>C synonymous_variant 0.89
rpoB 761150 c.1344A>C synonymous_variant 0.96
rpoB 761165 c.1359G>C synonymous_variant 0.96
rpoB 761180 c.1374A>G synonymous_variant 0.96
rpoB 761192 c.1386C>G synonymous_variant 0.96
rpoB 761195 c.1389G>C synonymous_variant 0.96
rpoB 761196 p.Leu464Val missense_variant 0.96
rpoB 761234 c.1428G>C synonymous_variant 0.91
rpoB 761249 c.1443A>G synonymous_variant 0.93
rpoB 761252 c.1446C>G synonymous_variant 0.93
rpoB 761255 c.1449T>G synonymous_variant 0.92
rpoB 761258 c.1452G>A synonymous_variant 0.92
rpoB 761261 c.1455G>C synonymous_variant 0.92
rpoB 761264 c.1458C>G synonymous_variant 0.92
rpoB 761288 c.1482G>C synonymous_variant 0.71
rpoB 761289 p.Ser495Ala missense_variant 0.71
rpoB 761292 p.Val496Ser missense_variant 0.71
rpoB 761296 p.Tyr497Phe missense_variant 0.71
rpoB 761304 p.Val500Ile missense_variant 0.71
rpoB 761310 p.Pro502Ser missense_variant 0.71
rpoB 761318 c.1512G>C synonymous_variant 0.71
rpoB 761327 c.1521A>G synonymous_variant 0.71
rpoB 761537 c.1731C>G synonymous_variant 1.0
rpoB 761555 c.1749G>C synonymous_variant 1.0
rpoB 761557 p.Ala584Gly missense_variant 1.0
rpoB 761561 c.1755C>G synonymous_variant 1.0
rpoB 761562 p.Ala586Ser missense_variant 1.0
rpoB 761565 p.Met587Leu missense_variant 1.0
rpoB 761570 c.1764T>C synonymous_variant 1.0
rpoB 761573 c.1767C>G synonymous_variant 1.0
rpoB 761579 c.1773G>C synonymous_variant 1.0
rpoB 761594 c.1788C>G synonymous_variant 1.0
rpoB 761600 c.1794T>C synonymous_variant 1.0
rpoB 761612 c.1806G>T synonymous_variant 1.0
rpoB 761615 c.1809A>G synonymous_variant 1.0
rpoB 762850 p.Tyr1015Phe missense_variant 1.0
rpoB 762855 p.Val1017Ile missense_variant 1.0
rpoB 762858 p.Thr1018Ser missense_variant 1.0
rpoC 762863 c.-507T>C upstream_gene_variant 1.0
rpoB 762879 p.Met1025Leu missense_variant 1.0
rpoC 762896 c.-474G>C upstream_gene_variant 0.94
rpoC 762917 c.-453C>G upstream_gene_variant 1.0
rpoC 762923 c.-447C>G upstream_gene_variant 1.0
rpoC 762926 c.-444C>G upstream_gene_variant 0.92
rpoC 762929 c.-441G>T upstream_gene_variant 1.0
rpoC 762932 c.-438G>C upstream_gene_variant 0.92
rpoC 762947 c.-423C>G upstream_gene_variant 0.92
rpoC 762962 c.-408C>T upstream_gene_variant 1.0
rpoC 762989 c.-381G>C upstream_gene_variant 1.0
rpoC 762995 c.-375G>C upstream_gene_variant 1.0
rpoB 763005 p.Cys1067Val missense_variant 1.0
rpoB 763014 p.Met1070Leu missense_variant 1.0
rpoB 763017 p.Gln1071Glu missense_variant 0.67
rpoC 763031 c.-339T>G upstream_gene_variant 0.83
rpoC 763034 c.-336C>G upstream_gene_variant 0.83
rpoB 763038 p.Thr1078Ala missense_variant 0.71
rpoC 763052 c.-318G>C upstream_gene_variant 0.7
rpoC 763053 c.-317T>C upstream_gene_variant 0.7
rpoB 763059 p.Ile1085Val missense_variant 0.7
rpoC 763067 c.-303C>G upstream_gene_variant 0.73
rpoC 763070 c.-300T>C upstream_gene_variant 0.73
rpoB 763075 p.Thr1090Ile missense_variant 0.73
rpoB 763077 p.Val1091Leu missense_variant 0.73
rpoC 763103 c.-267G>C upstream_gene_variant 0.83
rpoC 763115 c.-255T>C upstream_gene_variant 0.85
rpoC 763127 c.-243G>C upstream_gene_variant 0.76
rpoC 763133 c.-237G>C upstream_gene_variant 0.75
rpoC 763160 c.-210G>C upstream_gene_variant 0.69
rpoB 763161 p.Leu1119Met missense_variant 0.62
rpoC 763166 c.-204A>G upstream_gene_variant 0.69
rpoC 763169 c.-201A>G upstream_gene_variant 0.69
rpoB 763170 p.Leu1122Met missense_variant 0.69
rpoC 763181 c.-189G>C upstream_gene_variant 0.62
rpoC 763187 c.-183C>G upstream_gene_variant 0.69
rpoC 763202 c.-168A>C upstream_gene_variant 0.5
rpoC 763483 c.114G>C synonymous_variant 0.6
rpoC 763486 c.117T>G synonymous_variant 0.5
rpoC 763492 c.123G>C synonymous_variant 0.71
rpoC 763504 c.135C>T synonymous_variant 0.43
rpoC 763507 c.138G>C synonymous_variant 0.29
rpoC 763511 p.Cys48Gly missense_variant 0.43
rpoC 763517 p.Lys50Gln missense_variant 0.43
rpoC 763528 c.159G>C synonymous_variant 0.67
rpoC 763531 c.162G>C synonymous_variant 0.75
rpoC 763532 p.Thr55Ser missense_variant 0.38
rpoC 763537 c.168C>G synonymous_variant 0.38
rpoC 763546 c.177A>G synonymous_variant 0.88
rpoC 763550 p.Tyr61Ala missense_variant 0.38
rpoC 763570 c.201G>C synonymous_variant 0.83
rpoC 763618 c.249C>G synonymous_variant 0.75
rpoC 763622 p.Ala85Ser missense_variant 0.75
rpoC 763633 c.264T>C synonymous_variant 0.5
rpoC 763636 c.267T>C synonymous_variant 0.43
rpoC 763642 c.273G>C synonymous_variant 0.88
rpoC 763660 c.291T>C synonymous_variant 0.88
rpoC 763675 c.306C>G synonymous_variant 0.91
rpoC 763696 c.327T>C synonymous_variant 0.91
rpoC 763699 c.330G>C synonymous_variant 0.91
rpoC 763702 c.333C>G synonymous_variant 0.91
rpoC 763708 c.339G>C synonymous_variant 0.91
rpoC 763714 c.345G>C synonymous_variant 0.91
rpoC 763717 c.348T>C synonymous_variant 0.91
rpoC 763723 c.354G>C synonymous_variant 0.91
rpoC 763727 p.Leu120Met missense_variant 0.94
rpoC 763732 c.363C>G synonymous_variant 0.94
rpoC 763744 c.375G>C synonymous_variant 0.96
rpoC 763751 p.Ile128Val missense_variant 1.0
rpoC 763765 c.396T>C synonymous_variant 1.0
rpoC 763772 p.Val135Met missense_variant 1.0
rpoC 764301 p.Gly311Ala missense_variant 0.75
rpoC 764311 c.942C>G synonymous_variant 0.88
rpoC 764316 p.Ala316Val missense_variant 0.88
rpoC 764320 c.951C>G synonymous_variant 0.91
rpoC 764344 c.975C>T synonymous_variant 0.95
rpoC 764347 c.978G>C synonymous_variant 0.95
rpoC 764359 c.990C>G synonymous_variant 0.95
rpoC 764365 c.996C>T synonymous_variant 0.95
rpoC 764371 c.1002G>C synonymous_variant 1.0
rpoC 764377 c.1008C>G synonymous_variant 1.0
rpoC 764380 c.1011G>C synonymous_variant 1.0
rpoC 764387 c.1018T>C synonymous_variant 1.0
rpoC 764404 c.1035C>T synonymous_variant 1.0
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 1.0
rpoC 764428 c.1059G>C synonymous_variant 1.0
rpoC 764605 c.1236G>C synonymous_variant 1.0
rpoC 764611 c.1242G>T synonymous_variant 1.0
rpoC 764632 c.1263T>C synonymous_variant 0.97
rpoC 764650 c.1281G>T synonymous_variant 0.98
rpoC 764706 p.Leu446Gln missense_variant 0.97
rpoC 764740 p.Met457Ile missense_variant 0.8
rpoC 764746 c.1377G>C synonymous_variant 1.0
rpoC 764750 p.Val461Ile missense_variant 0.6
rpoC 766799 p.Ala1144Ser missense_variant 0.8
rpoC 766804 c.3435A>G synonymous_variant 0.8
rpoC 766807 c.3438T>C synonymous_variant 0.8
rpoC 766811 p.Ser1148Asp missense_variant 0.8
rpoC 766837 c.3468G>C synonymous_variant 0.8
rpoC 766843 c.3474T>G synonymous_variant 1.0
rpoC 766861 c.3492G>C synonymous_variant 1.0
rpoC 766868 p.Ile1167Val missense_variant 1.0
rpoC 766871 p.Ile1168Leu missense_variant 1.0
rpoC 766986 p.Val1206Glu missense_variant 1.0
rpoC 767014 c.3645G>C synonymous_variant 0.67
rpoC 767017 c.3648C>G synonymous_variant 0.67
rpoC 767020 c.3651C>G synonymous_variant 1.0
rpoC 767023 p.Asp1218Glu missense_variant 0.67
rpoC 767038 c.3669G>C synonymous_variant 1.0
rpoC 767041 c.3672G>C synonymous_variant 1.0
rpoC 767044 c.3675G>C synonymous_variant 0.67
rpoC 767056 c.3687C>G synonymous_variant 1.0
rpoC 767059 c.3690T>G synonymous_variant 1.0
rpoC 767068 c.3699G>C synonymous_variant 0.67
rpoC 767074 p.Asp1235Glu missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781751 c.192G>C synonymous_variant 0.75
rpsL 781754 c.195G>C synonymous_variant 0.83
rpsL 781760 c.201T>C synonymous_variant 0.75
rpsL 781763 c.204C>G synonymous_variant 0.91
rpsL 781794 p.Met79Leu missense_variant 1.0
rpsL 781802 c.243G>C synonymous_variant 1.0
rpsL 781805 c.246G>C synonymous_variant 1.0
rpsL 781814 c.255C>T synonymous_variant 1.0
rpsL 781817 c.258G>T synonymous_variant 1.0
rpsL 781829 c.270G>C synonymous_variant 1.0
rpsL 781832 c.273T>C synonymous_variant 1.0
rpsL 781838 c.279G>C synonymous_variant 1.0
rpsL 781851 p.Ile98Val missense_variant 1.0
rpsL 781860 p.Ser101Ala missense_variant 1.0
rpsL 781865 c.306G>C synonymous_variant 1.0
rpsL 781868 c.309T>C synonymous_variant 1.0
rpsL 781871 c.312G>C synonymous_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 1.0
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 1.0
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.9
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.89
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.89
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.89
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.91
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.99
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.99
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.88
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.96
rrs 1472284 n.439C>T non_coding_transcript_exon_variant 0.43
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.85
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.85
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.88
rrs 1472333 n.488G>A non_coding_transcript_exon_variant 0.93
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.97
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.98
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 1.0
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 1.0
rrs 1472389 n.544G>A non_coding_transcript_exon_variant 0.98
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 1.0
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 1.0
rrs 1472426 n.581T>C non_coding_transcript_exon_variant 1.0
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 1.0
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 1.0
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 1.0
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 1.0
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 1.0
rrs 1472507 n.662C>T non_coding_transcript_exon_variant 0.98
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.98
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.97
rrs 1472571 n.726G>A non_coding_transcript_exon_variant 0.94
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.99
rrs 1472606 n.761C>G non_coding_transcript_exon_variant 0.9
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.88
rrs 1472623 n.778A>C non_coding_transcript_exon_variant 0.87
rrs 1472645 n.800G>C non_coding_transcript_exon_variant 0.78
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.94
rrs 1472660 n.815T>A non_coding_transcript_exon_variant 0.97
rrs 1472666 n.821G>T non_coding_transcript_exon_variant 0.72
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 0.91
rrs 1472674 n.829T>G non_coding_transcript_exon_variant 0.86
rrs 1472675 n.830T>C non_coding_transcript_exon_variant 0.6
rrs 1472677 n.832C>T non_coding_transcript_exon_variant 0.86
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.82
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.82
rrs 1472685 n.840G>A non_coding_transcript_exon_variant 0.3
rrs 1472686 n.841G>T non_coding_transcript_exon_variant 0.6
rrs 1472687 n.842A>C non_coding_transcript_exon_variant 0.89
rrs 1472694 n.849C>A non_coding_transcript_exon_variant 0.83
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.97
rrs 1472714 n.869A>T non_coding_transcript_exon_variant 1.0
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.93
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.99
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.89
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.88
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.88
rrs 1472873 n.1028C>T non_coding_transcript_exon_variant 0.5
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.4
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.57
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.88
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.98
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.92
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.99
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.95
rrs 1472982 n.1137G>A non_coding_transcript_exon_variant 0.97
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.99
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.99
rrs 1472993 n.1148G>T non_coding_transcript_exon_variant 0.95
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.99
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.99
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.99
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.98
rrs 1473097 n.1252G>A non_coding_transcript_exon_variant 0.9
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.97
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.99
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.99
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.99
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 1.0
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 1.0
rrs 1473134 n.1289T>C non_coding_transcript_exon_variant 0.93
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 1.0
rrs 1473147 n.1302G>A non_coding_transcript_exon_variant 0.94
rrs 1473164 n.1319C>T non_coding_transcript_exon_variant 0.96
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 1.0
rrs 1473226 n.1381C>T non_coding_transcript_exon_variant 0.96
rrs 1473269 n.1424C>T non_coding_transcript_exon_variant 0.96
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 1.0
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 1.0
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.99
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.99
rrs 1473319 n.1474C>T non_coding_transcript_exon_variant 0.98
rrs 1473320 n.1475G>A non_coding_transcript_exon_variant 0.98
rrs 1473324 n.1479G>A non_coding_transcript_exon_variant 0.98
rrl 1473391 n.-267C>T upstream_gene_variant 1.0
rrl 1473698 n.41G>T non_coding_transcript_exon_variant 0.67
rrl 1473699 n.42A>G non_coding_transcript_exon_variant 0.67
rrl 1473707 n.50T>A non_coding_transcript_exon_variant 0.75
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.5
rrl 1473719 n.62G>C non_coding_transcript_exon_variant 0.67
rrl 1473721 n.64G>A non_coding_transcript_exon_variant 0.5
rrl 1473722 n.65G>T non_coding_transcript_exon_variant 0.67
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 1.0
rrl 1473746 n.89T>A non_coding_transcript_exon_variant 1.0
rrl 1473747 n.90C>T non_coding_transcript_exon_variant 0.67
rrl 1473750 n.93C>G non_coding_transcript_exon_variant 1.0
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 1.0
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 1.0
rrl 1473768 n.111A>G non_coding_transcript_exon_variant 0.5
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.5
rrl 1473782 n.125A>G non_coding_transcript_exon_variant 0.5
rrl 1473788 n.131A>C non_coding_transcript_exon_variant 1.0
rrl 1473797 n.140G>C non_coding_transcript_exon_variant 1.0
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 1.0
rrl 1473807 n.150T>G non_coding_transcript_exon_variant 1.0
rrl 1473815 n.158T>C non_coding_transcript_exon_variant 1.0
rrl 1473828 n.173_174delTG non_coding_transcript_exon_variant 0.86
rrl 1473834 n.178_179insTAG non_coding_transcript_exon_variant 1.0
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 1.0
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 1.0
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 1.0
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.97
rrl 1473887 n.230T>C non_coding_transcript_exon_variant 0.97
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 0.97
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.95
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.95
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.91
rrl 1473917 n.260G>C non_coding_transcript_exon_variant 0.9
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.9
rrl 1474141 n.485delC non_coding_transcript_exon_variant 0.5
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 0.94
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.96
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.95
rrl 1474184 n.527C>A non_coding_transcript_exon_variant 0.98
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.98
rrl 1474202 n.545T>A non_coding_transcript_exon_variant 0.98
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.98
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.97
rrl 1474265 n.608G>C non_coding_transcript_exon_variant 0.81
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.83
rrl 1474275 n.618T>A non_coding_transcript_exon_variant 0.73
rrl 1474280 n.623C>T non_coding_transcript_exon_variant 0.8
rrl 1474281 n.624A>G non_coding_transcript_exon_variant 0.67
rrl 1474316 n.659T>C non_coding_transcript_exon_variant 0.67
rrl 1474317 n.660G>A non_coding_transcript_exon_variant 0.8
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.93
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 0.87
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.87
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.87
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 0.78
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.79
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.82
rrl 1474415 n.759_781delCACACGCGCATACGCGCGTGTGA non_coding_transcript_exon_variant 0.5
rrl 1474444 n.787G>C non_coding_transcript_exon_variant 0.9
rrl 1474451 n.794T>C non_coding_transcript_exon_variant 0.93
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.93
rrl 1474466 n.809G>A non_coding_transcript_exon_variant 0.98
rrl 1474476 n.819C>T non_coding_transcript_exon_variant 0.98
rrl 1474488 n.831G>C non_coding_transcript_exon_variant 0.98
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.96
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.95
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.95
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.95
rrl 1474516 n.859C>G non_coding_transcript_exon_variant 0.99
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.99
rrl 1474558 n.901G>A non_coding_transcript_exon_variant 0.99
rrl 1474583 n.926C>T non_coding_transcript_exon_variant 0.97
rrl 1474601 n.944C>T non_coding_transcript_exon_variant 0.95
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.97
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.96
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.96
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.96
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.96
rrl 1474673 n.1016T>G non_coding_transcript_exon_variant 0.89
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 0.97
rrl 1474708 n.1052_1053insGTAAG non_coding_transcript_exon_variant 0.7
rrl 1474712 n.1056_1059delTGTA non_coding_transcript_exon_variant 0.7
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.88
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.59
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.61
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.63
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.9
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.9
rrl 1474770 n.1113G>A non_coding_transcript_exon_variant 0.69
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.91
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.9
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.68
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.67
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 0.75
rrl 1474794 n.1137C>A non_coding_transcript_exon_variant 0.92
rrl 1474800 n.1143T>C non_coding_transcript_exon_variant 0.83
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.97
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.96
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.86
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 0.97
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.97
rrl 1474920 n.1263G>A non_coding_transcript_exon_variant 0.92
rrl 1474935 n.1278A>G non_coding_transcript_exon_variant 0.82
rrl 1474938 n.1281G>A non_coding_transcript_exon_variant 0.76
rrl 1474945 n.1288C>T non_coding_transcript_exon_variant 0.38
rrl 1475084 n.1427G>T non_coding_transcript_exon_variant 0.64
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 0.93
rrl 1475108 n.1451C>T non_coding_transcript_exon_variant 0.86
rrl 1475111 n.1454G>A non_coding_transcript_exon_variant 0.86
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.96
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.96
rrl 1475119 n.1462C>T non_coding_transcript_exon_variant 0.86
rrl 1475120 n.1463G>T non_coding_transcript_exon_variant 0.86
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 0.93
rrl 1475129 n.1472G>A non_coding_transcript_exon_variant 0.96
rrl 1475488 n.1831G>C non_coding_transcript_exon_variant 0.67
rrl 1475508 n.1851A>T non_coding_transcript_exon_variant 0.97
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 1.0
rrl 1475536 n.1879C>A non_coding_transcript_exon_variant 0.94
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.97
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 1.0
rrl 1475548 n.1891C>T non_coding_transcript_exon_variant 0.97
rrl 1475549 n.1892T>C non_coding_transcript_exon_variant 0.97
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.97
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.92
rrl 1475602 n.1945G>C non_coding_transcript_exon_variant 0.75
rrl 1475604 n.1950_1951delAT non_coding_transcript_exon_variant 0.75
rrl 1475608 n.1951T>G non_coding_transcript_exon_variant 0.75
rrl 1475621 n.1964T>C non_coding_transcript_exon_variant 0.8
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.89
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.95
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.77
rrl 1475659 n.2002G>T non_coding_transcript_exon_variant 0.96
rrl 1475672 n.2015C>T non_coding_transcript_exon_variant 0.8
rrl 1475692 n.2035G>C non_coding_transcript_exon_variant 0.91
rrl 1475735 n.2078T>C non_coding_transcript_exon_variant 0.93
rrl 1475757 n.2100A>C non_coding_transcript_exon_variant 0.93
rrl 1475759 n.2102C>G non_coding_transcript_exon_variant 0.94
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.99
rrl 1475791 n.2134A>G non_coding_transcript_exon_variant 0.94
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.96
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.99
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.99
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.99
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.95
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.99
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.99
rrl 1475963 n.2306G>T non_coding_transcript_exon_variant 0.95
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.99
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.99
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475997 n.2340A>G non_coding_transcript_exon_variant 1.0
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.95
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 1.0
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 1.0
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.88
rrl 1476076 n.2419A>G non_coding_transcript_exon_variant 0.96
rrl 1476079 n.2422G>A non_coding_transcript_exon_variant 0.96
rrl 1476080 n.2423T>C non_coding_transcript_exon_variant 0.96
rrl 1476081 n.2424A>T non_coding_transcript_exon_variant 0.96
rrl 1476082 n.2425T>C non_coding_transcript_exon_variant 0.96
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.96
rrl 1476087 n.2430C>T non_coding_transcript_exon_variant 0.96
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.97
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.98
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.98
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.98
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.98
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.99
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.95
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.94
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.93
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.99
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.99
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.99
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.99
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 1.0
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 1.0
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 1.0
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 1.0
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 1.0
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 1.0
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 1.0
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 1.0
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 1.0
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 1.0
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 1.0
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.97
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.99
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.98
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 1.0
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 1.0
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.99
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.98
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.97
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.97
rrl 1476529 n.2872A>G non_coding_transcript_exon_variant 0.83
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.83
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.97
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.83
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.97
rrl 1476540 n.2883C>T non_coding_transcript_exon_variant 0.96
rrl 1476544 n.2887T>A non_coding_transcript_exon_variant 0.86
rrl 1476566 n.2909A>T non_coding_transcript_exon_variant 0.93
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.93
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 1.0
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 1.0
rrl 1476586 n.2929C>T non_coding_transcript_exon_variant 0.92
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 1.0
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.98
rrl 1476613 n.2956G>A non_coding_transcript_exon_variant 0.94
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 1.0
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 1.0
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 0.98
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 1.0
rrl 1476630 n.2973A>T non_coding_transcript_exon_variant 1.0
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.88
rrl 1476665 n.3008T>G non_coding_transcript_exon_variant 0.67
rrl 1476668 n.3011C>T non_coding_transcript_exon_variant 0.67
rrl 1476675 n.3018C>G non_coding_transcript_exon_variant 0.67
rpsA 1833646 c.105T>C synonymous_variant 1.0
rpsA 1833656 p.Val39Ile missense_variant 0.33
rpsA 1833661 p.Glu40Asp missense_variant 0.5
rpsA 1833667 c.126C>G synonymous_variant 0.57
rpsA 1833676 c.135A>G synonymous_variant 0.62
rpsA 1833677 p.Val46Ile missense_variant 0.5
rpsA 1833694 c.153G>T synonymous_variant 0.85
rpsA 1833697 c.156C>G synonymous_variant 0.73
rpsA 1833704 p.Ile55Val missense_variant 0.75
rpsA 1833721 c.180A>G synonymous_variant 0.86
rpsA 1833727 c.186G>C synonymous_variant 0.87
rpsA 1833734 p.Ala65Ser missense_variant 0.85
rpsA 1833742 c.201A>G synonymous_variant 0.85
rpsA 1833745 c.204G>C synonymous_variant 0.77
rpsA 1833772 c.231C>T synonymous_variant 0.75
rpsA 1833922 p.Lys127Asn missense_variant 0.5
rpsA 1833928 c.387G>C synonymous_variant 0.75
rpsA 1833949 c.408T>C synonymous_variant 0.83
rpsA 1833952 c.411C>T synonymous_variant 1.0
rpsA 1833955 c.414G>C synonymous_variant 1.0
rpsA 1833959 p.Leu140Val missense_variant 0.83
rpsA 1833970 c.429G>C synonymous_variant 0.86
rpsA 1833979 c.438T>C synonymous_variant 0.83
rpsA 1833991 c.450C>G synonymous_variant 0.6
rpsA 1833997 c.456G>C synonymous_variant 0.6
rpsA 1833998 p.Val153Ile missense_variant 0.5
rpsA 1834004 p.Met155Leu missense_variant 0.5
rpsA 1834012 c.471G>C synonymous_variant 1.0
rpsA 1834015 c.474G>C synonymous_variant 1.0
rpsA 1834183 c.642T>C synonymous_variant 1.0
rpsA 1834192 c.651C>G synonymous_variant 1.0
rpsA 1834210 c.669C>T synonymous_variant 1.0
rpsA 1834222 c.681T>C synonymous_variant 0.8
rpsA 1834231 c.690T>C synonymous_variant 0.83
rpsA 1834240 c.699T>C synonymous_variant 0.67
rpsA 1834243 c.702G>C synonymous_variant 0.83
rpsA 1834249 c.708T>C synonymous_variant 0.83
rpsA 1834255 c.714C>G synonymous_variant 0.67
rpsA 1834261 c.720A>G synonymous_variant 0.83
rpsA 1834366 c.825A>G synonymous_variant 1.0
rpsA 1834369 c.828C>G synonymous_variant 1.0
rpsA 1834378 c.837T>G synonymous_variant 0.88
rpsA 1834384 c.843A>G synonymous_variant 0.89
rpsA 1834395 p.Arg285Gln missense_variant 0.9
rpsA 1834397 p.His286Val missense_variant 0.82
rpsA 1834411 c.870T>C synonymous_variant 0.88
rpsA 1834423 c.882G>T synonymous_variant 0.92
rpsA 1834430 p.Val297Thr missense_variant 0.88
rpsA 1834451 c.910T>C synonymous_variant 0.92
rpsA 1834456 c.915T>C synonymous_variant 0.92
rpsA 1834468 c.927A>G synonymous_variant 0.9
rpsA 1834482 p.Glu314Ala missense_variant 0.81
rpsA 1834486 p.Glu315Asp missense_variant 0.88
rpsA 1834489 c.948T>C synonymous_variant 0.88
rpsA 1834501 c.960G>C synonymous_variant 0.93
rpsA 1834513 c.972C>G synonymous_variant 0.75
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2155674 c.438G>C synonymous_variant 1.0
katG 2155680 c.432G>C synonymous_variant 1.0
katG 2155689 c.421_423delTTGinsCTC synonymous_variant 1.0
katG 2155696 p.Ala139Gly missense_variant 1.0
katG 2155710 c.400_402delAGCinsTCG synonymous_variant 0.8
katG 2155716 c.396T>G synonymous_variant 0.8
katG 2155728 c.384G>C synonymous_variant 0.8
katG 2155735 p.Met126Gln missense_variant 0.8
katG 2155737 c.375C>G synonymous_variant 0.8
katG 2155741 p.Gly124Ala missense_variant 0.8
katG 2155743 c.369G>C synonymous_variant 0.83
katG 2155767 p.Ile115Ser missense_variant 0.75
katG 2155785 p.Ala109Ser missense_variant 0.75
katG 2155800 c.312G>C synonymous_variant 0.75
katG 2155806 p.Phe102Ile missense_variant 0.75
katG 2155809 p.Leu101Phe missense_variant 1.0
katG 2155815 c.297G>C synonymous_variant 1.0
katG 2155828 p.Tyr95Phe missense_variant 1.0
pepQ 2859819 c.600G>C synonymous_variant 1.0
ald 3087677 c.858G>C synonymous_variant 0.5
ald 3087686 c.867C>G synonymous_variant 0.5
ald 3087693 p.Asp292Gln missense_variant 0.5
ald 3087696 p.Thr293Ser missense_variant 0.67
ald 3087703 p.Phe295Tyr missense_variant 0.67
ald 3087716 c.897G>C synonymous_variant 0.5
ald 3087727 p.Ala303Gly missense_variant 0.5
ald 3087729 p.Ser304Ala missense_variant 0.5
ald 3087737 c.918G>C synonymous_variant 0.5
ald 3087738 p.Lys307Glu missense_variant 0.5
ald 3087743 c.924G>C synonymous_variant 0.5
ald 3087750 p.Tyr311Arg missense_variant 0.5
ald 3087771 p.Met318Leu missense_variant 0.67
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
clpC1 4038815 c.1890G>C synonymous_variant 1.0
clpC1 4038839 c.1866G>C synonymous_variant 1.0
clpC1 4038842 c.1863G>C synonymous_variant 1.0
clpC1 4038860 c.1845G>C synonymous_variant 0.86
clpC1 4038872 c.1833C>G synonymous_variant 1.0
clpC1 4038878 c.1827A>G synonymous_variant 1.0
clpC1 4038894 p.Tyr604Phe missense_variant 1.0
clpC1 4038903 p.Tyr601Phe missense_variant 1.0
clpC1 4038905 c.1800A>C synonymous_variant 1.0
clpC1 4038911 c.1794G>T synonymous_variant 1.0
clpC1 4038914 c.1791G>C synonymous_variant 1.0
clpC1 4038923 c.1782A>G synonymous_variant 1.0
clpC1 4039674 p.Pro344Gln missense_variant 0.67
clpC1 4039691 c.1014G>C synonymous_variant 0.5
clpC1 4039711 p.Ile332Phe missense_variant 0.5
clpC1 4039714 p.Tyr331His missense_variant 0.6
clpC1 4039724 c.981A>G synonymous_variant 0.89
clpC1 4039736 c.969C>G synonymous_variant 0.8
clpC1 4039751 c.954A>G synonymous_variant 0.82
clpC1 4039757 c.948A>G synonymous_variant 0.75
clpC1 4039760 c.945T>C synonymous_variant 0.75
clpC1 4039766 c.939T>C synonymous_variant 0.77
clpC1 4039773 p.Lys311Met missense_variant 0.82
clpC1 4039778 c.927A>G synonymous_variant 0.82
clpC1 4039790 c.915C>G synonymous_variant 0.86
clpC1 4039817 c.888A>T synonymous_variant 0.85
clpC1 4039820 c.885T>G synonymous_variant 0.83
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.73
clpC1 4039832 c.873C>G synonymous_variant 0.73
clpC1 4039838 p.Leu289Ile missense_variant 0.8
clpC1 4039850 c.855T>C synonymous_variant 0.78
clpC1 4039853 p.Leu284Ile missense_variant 0.67
clpC1 4039865 c.840T>C synonymous_variant 0.86
clpC1 4039871 c.834C>G synonymous_variant 0.86
clpC1 4039875 p.Asn277Arg missense_variant 0.86
clpC1 4039887 p.Leu273Thr missense_variant 0.5
clpC1 4039960 p.Thr249Ser missense_variant 0.5
clpC1 4039964 c.741C>G synonymous_variant 0.6
clpC1 4039979 c.726C>G synonymous_variant 0.62
clpC1 4039991 c.714G>C synonymous_variant 0.22
clpC1 4039994 p.Glu237Asp missense_variant 0.89
clpC1 4040000 p.His235Arg missense_variant 0.67
clpC1 4040003 c.702G>C synonymous_variant 0.67
clpC1 4040009 p.Ala232Glu missense_variant 0.75
clpC1 4040018 c.687G>C synonymous_variant 1.0
clpC1 4040021 c.684A>C synonymous_variant 1.0
clpC1 4040024 c.681A>G synonymous_variant 1.0
clpC1 4040029 p.Val226Ile missense_variant 0.75
clpC1 4040030 c.675C>G synonymous_variant 0.75
clpC1 4040033 c.672G>C synonymous_variant 1.0
clpC1 4040087 c.618G>C synonymous_variant 1.0
clpC1 4040090 c.615T>G synonymous_variant 1.0
clpC1 4040093 c.612C>G synonymous_variant 1.0
clpC1 4040096 p.Val203Ile missense_variant 1.0
clpC1 4040108 c.597G>C synonymous_variant 1.0
clpC1 4040117 c.588A>G synonymous_variant 1.0
clpC1 4040129 c.576C>G synonymous_variant 1.0
clpC1 4040278 p.Ser143Thr missense_variant 1.0
clpC1 4040291 c.414G>C synonymous_variant 1.0
clpC1 4040307 p.Arg133Lys missense_variant 1.0
clpC1 4040310 p.Thr132Asn missense_variant 1.0
clpC1 4040312 c.393G>C synonymous_variant 1.0
clpC1 4040315 p.Glu130Asp missense_variant 1.0
clpC1 4040324 c.381G>C synonymous_variant 1.0
clpC1 4040351 c.354C>T synonymous_variant 1.0
clpC1 4040354 c.351A>G synonymous_variant 1.0
clpC1 4040357 c.348T>C synonymous_variant 1.0
clpC1 4040363 c.342A>C synonymous_variant 1.0
clpC1 4040369 c.336C>G synonymous_variant 1.0
clpC1 4040375 c.330G>C synonymous_variant 1.0
clpC1 4040380 c.325T>C synonymous_variant 1.0
clpC1 4040381 c.324T>C synonymous_variant 1.0
clpC1 4040387 c.318A>G synonymous_variant 1.0
clpC1 4040393 c.312G>C synonymous_variant 1.0
clpC1 4040411 c.294T>C synonymous_variant 1.0
clpC1 4040423 c.282A>G synonymous_variant 1.0
clpC1 4040426 c.279T>C synonymous_variant 1.0
clpC1 4040606 c.99T>C synonymous_variant 1.0
clpC1 4040643 p.Arg21Lys missense_variant 1.0
clpC1 4040645 c.60C>G synonymous_variant 1.0
clpC1 4040657 c.48T>C synonymous_variant 1.0
clpC1 4040660 c.45G>C synonymous_variant 1.0
clpC1 4040669 c.36C>G synonymous_variant 1.0
clpC1 4040672 c.31_33delAGGinsCGT synonymous_variant 1.0
clpC1 4040675 c.30C>T synonymous_variant 1.0
clpC1 4040690 c.15T>C synonymous_variant 1.0
clpC1 4040695 c.10C>A synonymous_variant 1.0
clpC1 4040696 c.9A>G synonymous_variant 1.0