EBG00000313325 - n.534T>C
Drug resistance types
41 Sensitive
29 RR-TB
9 HR-TB
41 MDR-TB
15 Pre-XDR-TB
1 XDR-TB
123 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 32 |
| lineage4.9 | 91 |
| lineage4.3.4.2.1 | 6 |
| lineage4.1.1.3 | 8 |
| lineage4.6.1.2 | 4 |
| lineage4.4.1.1 | 2 |
| lineage4.3.3 | 8 |
| lineage4.4.2 | 2 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage4.1.2.1 | 9 |
| lineage4.3.3;lineage4.8 | 4 |
| lineage4.8 | 17 |
| lineage4.4.1.1.1 | 2 |
| lineage4.7 | 2 |
| La1.8.1 | 2 |
| lineage4.1.2;lineage4.9 | 1 |
| lineage1.1.2;lineage6.2.3 | 1 |
| lineage3 | 4 |
| lineage2.2.2 | 3 |
| lineage4.2.1 | 5 |
| lineage3.1.2.1 | 2 |
| lineage4.8.1 | 4 |
| lineage2.2.1.1 | 2 |
| lineage2.2.1;lineage4 | 2 |
| lineage3.1.2.2 | 1 |
| La1.7.1 | 1 |
| lineage1.2.2.2 | 2 |
| lineage4.2.2.2 | 2 |
| lineage4.3.2.1 | 2 |
| lineage3.1.1 | 6 |
| lineage4.1.1.1 | 3 |
| lineage4.3.4.1 | 3 |
| lineage4.3.4.1;lineage4.9 | 1 |
| lineage4.6.1.1 | 2 |
| lineage1.1.1.1 | 1 |
| 1 | |
| lineage4.1;lineage4.9 | 1 |
| lineage4.1.3 | 1 |
| lineage4.3.4.2 | 3 |
| lineage4.3.2 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.1.2 | 2 |
| lineage4.1.1.3.1 | 1 |
| lineage6.1.2 | 1 |
| lineage4.4 | 1 |
| La2 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| La1.3 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.9.1 | 1 |
| lineage5.1.1 | 1 |
| lineage4.8.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 259 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR11342691 | MDR-TB | lineage2.2.1 | None | SRR5818399 | Sensitive | lineage4.9 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR5818436 | Sensitive | lineage4.9 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR867572 | Other | lineage4.9 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969542 | Other | lineage4.4.2 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR5818397 | Other | lineage4.9 | None | SRR5818429 | Sensitive | lineage4.9 | None | SRR5818448 | Other | lineage4.9 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1019127 | Other | lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR1184329 | Other | lineage4.9 | None | SRR3675256 | Other | lineage4.7 | None | SRR5818398 | Other | lineage4.9 | None | SRR5818409 | Other | lineage4.9 | None | SRR1792022 | Other | La1.8.1 | None | SRR1173185 | Other | lineage4.9 | None | ERR867571 | Other | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR6982246 | Sensitive | lineage4.1.2;lineage4.9 | None | SRR5818408 | Other | lineage4.9 | None | ERR3324368 | RR-TB | lineage1.1.2;lineage6.2.3 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | SRR5818452 | Other | lineage4.9 | None | ERR9992784 | XDR-TB | lineage2.2.2 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR10796635 | Other | lineage4.8 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR1181256 | Other | lineage4.9 | None | ERR4811101 | Other | lineage4.4.2 | None | SRR5818424 | Sensitive | lineage4.9 | None | SRR5818388 | Other | lineage4.9 | None | SRR5818428 | Sensitive | lineage4.9 | None | SRR5818455 | Sensitive | lineage4.9 | None | SRR5818470 | Other | lineage4.9 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | ERR10796597 | Other | lineage4.3.3 | None | SRR6045909 | Other | lineage4.8.1 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | ERR867544 | Other | lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR7645928 | Other | lineage4.7 | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | SRR5818417 | Sensitive | lineage4.9 | None | SRR1140942 | Other | lineage2.2.1;lineage4 | None | SRR7068875 | Other | lineage3.1.2.2 | None | SRR5818442 | Sensitive | lineage4.9 | None | SRR5818395 | Sensitive | lineage4.9 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR6046815 | Other | lineage3 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR21469200 | Other | La1.7.1 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR5818393 | Other | lineage4.9 | None | SRR18002974 | Other | lineage2.2.1 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796564 | Other | lineage4.3.3 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR5818394 | Other | lineage4.9 | None | SRR6045957 | Other | lineage4.9 | None | ERR10796626 | Other | lineage4.1.2.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR5818385 | Other | lineage4.9 | None | ERR11465776 | Sensitive | lineage4.1.1.3 | None | ERR11465833 | Sensitive | lineage4.3.2.1 | None | ERR9117740 | Other | lineage3.1.1 | None | SRR5818435 | Sensitive | lineage4.9 | None | ERR867569 | Other | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | SRR7070369 | Other | lineage1.2.2.2 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR2229198 | Sensitive | lineage4.8 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR5818386 | Other | lineage4.9 | None | ERR867554 | Other | lineage4.3.4.1 | None | SRR7070293 | Other | lineage4.8 | None | SRR5818458 | Other | lineage4.9 | None | SRR5818426 | Other | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR3675582 | Other | lineage4.9 | None | ERR10796572 | Other | lineage4.3.4.1;lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | ERR1199064 | Sensitive | lineage4.6.1.1 | ug | SRR5818421 | Sensitive | lineage4.9 | None | SRR5818387 | Sensitive | lineage4.9 | None | SRR5818402 | Other | lineage4.9 | None | SRR5818449 | MDR-TB | lineage4.9 | None | SRR5818405 | Other | lineage4.9 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR7131053 | Other | lineage2.2.1 | None | ERR11465626 | Sensitive | lineage4.3.4.2.1 | None | SRR5818437 | RR-TB | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | DRR185000 | Other | lineage1.1.1.1 | None | SRR5818427 | HR-TB | lineage4.9 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796598 | Other | lineage4.9 | None | ERR867573 | Other | lineage4.9 | None | SRR1792011 | Other | La1.8.1 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | ERR4817069 | RR-TB | None | SRR7070134 | Other | lineage3.1.1 | None | ERR1198990 | Other | lineage4.6.1.1 | ug | ERR10796629 | Other | lineage4.1;lineage4.9 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR7069839 | Other | lineage4.8 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR5818389 | Other | lineage4.9 | None | SRR5818396 | Other | lineage4.9 | None | SRR5818422 | Other | lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR5818439 | Sensitive | lineage4.9 | None | ERR10796561 | Other | lineage4.3.2 | None | SRR5818411 | RR-TB | lineage4.9 | None | ERR10796591 | Other | lineage4.9 | None | SRR5818423 | RR-TB | lineage4.9 | None | SRR5818453 | Sensitive | lineage4.9 | None | SRR5818459 | Other | lineage4.9 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | ERR10796560 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR7070665 | HR-TB | lineage3 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR10796565 | Other | lineage4.9 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818414 | Other | lineage4.9 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR7645977 | MDR-TB | lineage4.2.1 | None | SRR5818446 | Other | lineage4.9 | None | SRR22424765 | HR-TB | lineage4.8 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR11342669 | Other | lineage4.8 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | ERR867575 | Other | lineage4.9 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | ERR10796620 | Other | lineage4.1.1.1 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR9787033 | Sensitive | lineage6.1.2 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR5818445 | Other | lineage4.9 | None | SRR5818419 | Sensitive | lineage4.9 | None | SRR13888750 | Other | La2 | None | ERR245801 | Other | lineage4.3.4.2.1 | None | SRR16156188 | Sensitive | lineage4.9 | None | SRR6982141 | Other | lineage4.3.3 | None | SRR5818410 | Sensitive | lineage4.9 | None | SRR5818413 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | SRR7069669 | Other | lineage3.1.1 | None | SRR5818462 | Other | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR9787000 | Sensitive | lineage4.1.2.1 | None | ERR4769436 | Other | La1.3 | None | ERR978767 | RR-TB | lineage4.8 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818441 | Other | lineage4.9 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR5818425 | Other | lineage4.9 | None | ERR11465627 | Sensitive | lineage4.3.4.2.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR037504 | Other | lineage4.9.1 | None | ERR502517 | Other | lineage5.1.1 | None | SRR1196478 | Other | lineage4.9 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR7070602 | Other | lineage4.2.1 | None | SRR7131195 | Other | lineage2.2.1 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR11465490 | Sensitive | lineage4.1.2.1 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR10796577 | Other | lineage4.9 | None | SRR5818440 | Other | lineage4.9 | None | SRR5818469 | Other | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR1175474 | Other | lineage4.9 | None | ERR11465830 | Sensitive | lineage4.9 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | ERR3283046 | Sensitive | lineage4.9 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7755657 | Other | lineage4.8 | None | SRR7068941 | Other | lineage4.8.2 | None | ERR11465829 | Sensitive | lineage4.9 | None | SRR5818404 | Other | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR1181403 | Other | lineage4.9 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR11465777 | Sensitive | lineage4.1.1.3 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR1180440 | Other | lineage4.9 | None | SRR7069800 | Other | lineage3.1.2.1 | None | SRR7131123 | Other | lineage4.8 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR3675552 | Other | lineage4.9 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR6046117 | Other | lineage4.9 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796633 | Other | lineage4.3.4.2 | None | SRR5818432 | MDR-TB | lineage4.9 | None | SRR5818456 | Other | lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | SRR11342682 | Other | lineage4.1.2 | None | ERR867574 | Other | lineage4.9 | None | SRR5818460 | Other | lineage4.9 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7070535 | HR-TB | lineage4.1.2.1 | None | SRR7131121 | Other | lineage4.3.3 | None | ERR867567 | RR-TB | lineage3 | None |
|---|
