TB-Profiler result

Run: SRR5818410
Summary

Run ID: SRR5818410

Sample name:

Date: 04-04-2023 11:24:34

Number of reads: 361743

Percentage reads mapped: 99.33

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7585 p.Ser95Thr missense_variant 1.0
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.79
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.75
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.68
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.12
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.18
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.18
rrs 1472332 n.487A>G non_coding_transcript_exon_variant 0.18
rrs 1472333 n.488G>A non_coding_transcript_exon_variant 0.18
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.36
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.38
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.57
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.65
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.48
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.59
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.64
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.46
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.6
rrs 1472436 n.591G>T non_coding_transcript_exon_variant 0.52
rrs 1472437 n.592T>G non_coding_transcript_exon_variant 0.53
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.62
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.65
rrs 1472449 n.604C>T non_coding_transcript_exon_variant 0.57
rrs 1472450 n.605A>C non_coding_transcript_exon_variant 0.57
rrs 1472451 n.606C>T non_coding_transcript_exon_variant 0.57
rrs 1472462 n.617T>G non_coding_transcript_exon_variant 0.6
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.71
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 0.62
rrs 1472474 n.629C>G non_coding_transcript_exon_variant 0.62
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.63
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 0.52
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.58
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.74
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 0.74
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.86
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.59
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.18
rrs 1472571 n.726G>T non_coding_transcript_exon_variant 0.12
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.4
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.34
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.23
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.16
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.35
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.32
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.3
rrs 1472686 n.841G>T non_coding_transcript_exon_variant 0.22
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.22
rrs 1472690 n.845C>T non_coding_transcript_exon_variant 0.22
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.21
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.22
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.23
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.17
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.19
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.14
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.18
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.17
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.18
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.18
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.17
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.17
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.17
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.19
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.19
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.16
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.19
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.13
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.14
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.14
rrs 1473300 n.1455C>T non_coding_transcript_exon_variant 0.16
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.16
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.21
tlyA 1917972 c.33A>G synonymous_variant 1.0
ahpC 2726184 c.-9A>C upstream_gene_variant 0.67
ahpC 2726468 c.276G>A synonymous_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407873 c.330G>T synonymous_variant 1.0