EBG00000313325 - n.842A>T
Drug resistance types
30 Sensitive
63 RR-TB
18 HR-TB
39 MDR-TB
14 Pre-XDR-TB
2 XDR-TB
158 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 50 |
| lineage4.8 | 68 |
| lineage4.6.1.1 | 1 |
| lineage2.2.1 | 44 |
| lineage4.4.1.1 | 7 |
| lineage4.1.1.1 | 4 |
| lineage4.2.2 | 3 |
| lineage1.2.1.2 | 2 |
| lineage2;lineage4 | 1 |
| lineage4.1.2.1 | 11 |
| lineage1.1.2;lineage6.2.3 | 1 |
| lineage2.2.2 | 3 |
| lineage4.6.1.2 | 4 |
| lineage3.1.1 | 4 |
| lineage4.1.1.3 | 11 |
| lineage4.2.1 | 5 |
| lineage4.3.3;lineage4.8 | 3 |
| lineage4.3.4.1 | 7 |
| lineage4.3.3 | 3 |
| lineage4.2.1.1;lineage4.3.3 | 2 |
| lineage1.2.1.1 | 2 |
| La1.8.1 | 8 |
| lineage4.4.2 | 4 |
| La1.7;lineage2.2.1 | 1 |
| lineage6.1.3 | 1 |
| La1.3 | 3 |
| lineage1.1.1 | 1 |
| La1.7.1 | 3 |
| lineage4.3.4.2 | 2 |
| lineage3 | 14 |
| lineage4.3.4.1;lineage4.9 | 1 |
| lineage4.5 | 2 |
| lineage3;lineage4 | 2 |
| lineage1.1.3.2 | 2 |
| lineage4.1.1.2 | 1 |
| lineage4.7 | 2 |
| lineage4.2.2.2 | 4 |
| lineage4.2.1.1 | 1 |
| lineage6.2.3 | 1 |
| La1.2 | 1 |
| lineage3.1.2.1 | 2 |
| lineage4.8;lineage4.9 | 1 |
| lineage4.1.2 | 4 |
| lineage4.3.2.1 | 4 |
| lineage3.1.3 | 1 |
| lineage1.2.2.2 | 1 |
| lineage6.3.2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.3.2 | 4 |
| lineage4.4.1.2 | 2 |
| lineage2.2.1.1 | 3 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage3.1.2;lineage4.1.1.3.1 | 1 |
| La1.7.X-unk4 | 1 |
| lineage3;lineage4.8 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage6.1.2 | 1 |
| lineage1.2.2.1 | 1 |
| lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 324 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5818437 | RR-TB | lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR978747 | Other | lineage4.8 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR2228899 | Other | lineage4.8 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR3797065 | RR-TB | lineage4.9 | None | ERR978735 | Other | lineage4.8 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | DRR188816 | Sensitive | lineage4.2.2 | None | SRR7131201 | Other | lineage4.8 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR2229147 | Other | lineage4.8 | None | SRR10214505 | Sensitive | lineage1.2.1.2 | None | SRR5818408 | Other | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR2229811 | Other | lineage4.8 | dk | SRR19304035 | Other | lineage4.1.2.1 | None | ERR3324368 | RR-TB | lineage1.1.2;lineage6.2.3 | None | ERR9992784 | XDR-TB | lineage2.2.2 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR21686597 | Sensitive | lineage4.1.2.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR18002872 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283008 | Other | lineage4.9 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR1175474 | Other | lineage4.9 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR14802219 | Other | lineage4.8 | None | ERR4769530 | RR-TB | lineage4.9 | None | SRR7069441 | Sensitive | lineage4.8 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR9971017 | HR-TB | lineage2.2.1 | None | SRR9971223 | Other | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR22048536 | Other | lineage4.3.3 | None | ERR978733 | RR-TB | lineage4.8 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR1181403 | Other | lineage4.9 | None | ERR2228910 | Other | lineage4.8 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | ERR911929_ERR911930 | Other | lineage4.8 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR023450 | RR-TB | lineage2.2.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR3559290 | HR-TB | lineage4.2.2 | None | SRR1792025 | Other | La1.8.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | SRR2101627 | Other | lineage4.1.2.1 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | SRR6046839 | Other | lineage4.9 | None | SRR10869254 | Pre-XDR-TB | lineage2.2.1 | None | ERR978756 | Other | lineage4.8 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR20969923 | Other | La1.7;lineage2.2.1 | None | ERR3806588 | Other | lineage6.1.3 | None | SRR9971351 | RR-TB | lineage2.2.1 | None | ERR4769423 | Other | La1.3 | None | SRR5818435 | Sensitive | lineage4.9 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR6045267 | RR-TB | lineage4.8 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR11349151 | MDR-TB | lineage2.2.1 | None | ERR978762 | Other | lineage4.8 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR4132460 | MDR-TB | lineage2.2.1 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | ERR10796623 | Other | lineage4.1.1.1 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR11342686 | MDR-TB | lineage4.8 | None | ERR3261359 | Other | lineage4.9 | None | ERR867554 | Other | lineage4.3.4.1 | None | ERR867554 | Other | lineage4.3.4.1 | None | SRR6152980 | HR-TB | lineage4.8 | ca | ERR4769495 | Other | La1.3 | None | SRR21469201 | Other | La1.7.1 | None | SRR6511600 | MDR-TB | lineage4.3.4.2 | None | SRR16157123 | Other | lineage4.9 | None | ERR4796351 | Sensitive | lineage4.9 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR5818464 | Other | lineage4.9 | None | ERR9117788 | Other | lineage3 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR10796558 | Sensitive | lineage4.3.4.1;lineage4.9 | None | ERR2229541 | Other | lineage4.8 | None | SRR5818429 | Sensitive | lineage4.9 | None | ERR736816 | Other | lineage4.9 | None | ERR10796582 | Other | lineage4.3.4.1 | None | ERR2229366 | Other | lineage4.8 | None | SRR18213726 | Other | lineage3 | None | SRR6824324 | Other | lineage4.5 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR1023509 | Other | lineage4.9 | None | ERR2228900 | Other | lineage4.8 | None | ERR10796552 | Sensitive | lineage4.3.4.1 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | SRR10614047 | Sensitive | lineage4.9 | None | ERR2886463 | Sensitive | lineage2.2.1 | None | SRR7069216 | Other | lineage4.1.2.1 | None | SRR11342634 | MDR-TB | lineage4.8 | None | SRR14801720 | Other | lineage4.8 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR1175473 | Other | lineage4.9 | None | SRR14801652 | HR-TB | lineage4.3.3 | None | SRR4033549 | Other | lineage2.2.2 | None | ERR911929 | Other | lineage4.8 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR7821182 | Other | lineage1.1.3.2 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR8975044 | Other | lineage4.1.1.2 | None | ERR978746 | RR-TB | lineage4.8 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | SRR1792022 | Other | La1.8.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR867520 | Other | lineage4.7 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR5818591 | Other | lineage4.2.2.2 | dj | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR6785281 | Other | lineage4.2.1.1 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR1792011 | Other | La1.8.1 | None | ERR4818507 | Other | lineage4.1.2.1 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR10796636 | Other | lineage4.1.2.1 | None | SRR8600288 | Other | La1.8.1 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SRR1735598 | RR-TB | lineage4.9 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | ERR978757 | RR-TB | lineage4.8 | None | ERR2027253 | Other | lineage6.2.3 | None | ERR4769418 | Other | La1.2 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | SRR1173281 | Other | lineage3 | None | SRR6896535 | Other | lineage4.1.1.3 | None | ERR978694 | Other | lineage4.8 | None | SRR18003031 | HR-TB | lineage2.2.1 | None | SRR5818424 | Sensitive | lineage4.9 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR9971369 | MDR-TB | lineage4.1.1.3 | None | ERR10796599 | Other | lineage4.8 | None | SRR15508556 | Other | lineage4.3.4.1 | None | ERR2228810 | Other | lineage4.8;lineage4.9 | None | ERR3261351 | Other | lineage4.9 | None | ERR978727 | Other | lineage4.8 | None | SRR023487 | RR-TB | lineage2.2.1 | None | SRR10315693 | RR-TB | lineage4.1.2 | None | ERR2515818 | Other | lineage4.3.2.1 | za | ERR3275190 | Other | lineage3 | nl | ERR978751 | Other | lineage4.8 | None | SRR21240055 | Other | lineage4.1.2.1 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR2027291 | Sensitive | lineage3.1.3 | None | SRR1735599 | Other | lineage1.2.2.2 | None | ERR978755 | RR-TB | lineage4.8 | None | SRR5818430 | Sensitive | lineage4.9 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | ERR978761 | Other | lineage4.8 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR1180440 | Other | lineage4.9 | None | SRR6046852 | MDR-TB | lineage3 | None | ERR5336160 | Other | lineage6.3.2 | None | ERR2229436 | Other | lineage4.8 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR978726 | RR-TB | lineage4.8 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR7070596 | Other | lineage4.8 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782113 | Pre-XDR-TB | lineage4.2.1 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | SRR10315707 | MDR-TB | lineage4.4.1.1.1 | None | SRR6044983 | Other | lineage3.1.1 | None | ERR3804166 | Other | lineage4.3.2 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828879 | HR-TB | lineage3 | None | SRR6397579 | Other | lineage4.4.1.2 | ca | ERR2446509 | Other | lineage3 | nl | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR2228838 | Other | lineage4.8 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | SRR15316102 | Other | lineage2.2.1.1 | None | SRR5818410 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7236134 | Other | La1.8.1 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR18911555 | Other | lineage4.1.2.1 | None | SRR6046376 | Other | lineage3 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR2514430 | Other | lineage3.1.2;lineage4.1.1.3.1 | None | ERR10796583 | Other | lineage2.2.1 | None | SRR6855828 | Other | lineage4.3.2.1 | None | SRR20969951 | Other | lineage4.4.2 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR3261389 | Other | lineage4.9 | None | ERR3445487 | Other | La1.7.X-unk4 | None | SRR1180446 | Other | lineage4.9 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | ERR3559289 | HR-TB | lineage4.2.2 | None | ERR4830549 | MDR-TB | lineage4.1.1.3 | None | ERR2516042 | Other | lineage4.1.1.3 | za | SRR21469202 | Other | La1.7.1 | None | DRR034348 | Other | lineage2.2.1 | None | ERR978754 | RR-TB | lineage4.8 | None | SRR1173833 | Other | lineage4.9 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | ERR978734 | RR-TB | lineage4.8 | None | SRR1181256 | Other | lineage4.9 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR19325518 | MDR-TB | lineage2.2.1 | None | SRR6046219 | Other | lineage3;lineage4.8 | gb | ERR867544 | Other | lineage4.9 | None | ERR9786452 | Other | lineage4.3.2 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR2229733 | Other | lineage4.8 | dk | SRR5163959 | Other | lineage4.9 | None | ERR10796561 | Other | lineage4.3.2 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | ERR978750 | RR-TB | lineage4.8 | None | SRR7069164 | Other | lineage4.8 | None | ERR2514801 | Other | lineage1.1.3.2 | gb | SRR6397733 | Other | lineage4.4.1.2 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | SRR7070223 | HR-TB | lineage3 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR9971088 | RR-TB | lineage2.2.1 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | SRR5818395 | Sensitive | lineage4.9 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR6046815 | Other | lineage3 | None | SRR6046815 | Other | lineage3 | None | ERR4812495 | Other | lineage4.1.2.1 | pe | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR21469200 | Other | La1.7.1 | None | SRR5818394 | Other | lineage4.9 | None | ERR6866241 | Other | lineage4.3.2 | None | SRR7069800 | Other | lineage3.1.2.1 | None | SRR6824501 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR3675552 | Other | lineage4.9 | None | ERR978752 | Other | lineage4.8 | None | SRR5818400 | Other | lineage4.9 | None | SRR1173421 | Other | lineage4.9 | None | ERR867575 | Other | lineage4.9 | None | ERR983238 | MDR-TB | lineage2.2.1.1 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR5908124 | Other | lineage4.8 | None | SRR21240202 | HR-TB | lineage4.4.1.1 | None | SRR11972369 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR6045603 | Other | lineage4.1.1.3 | None | SRR6045603 | Other | lineage4.1.1.3 | None | SRR9971147 | RR-TB | lineage2.2.1 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR7069687 | Other | lineage4.1.1.3.1 | None | SRR10315579 | Other | lineage2.2.1.1 | None | ERR9787033 | Sensitive | lineage6.1.2 | None | ERR2660505 | Other | lineage1.2.2.1 | None | SRR5818399 | Sensitive | lineage4.9 | None | ERR270777 | HR-TB | lineage4.1.2 | None | ERR2851359 | Other | lineage4.9 | None | SRR3675230 | Other | lineage3;lineage4 | None | ERR4769433 | RR-TB | lineage4.9 | None | SRR10315696 | Sensitive | lineage4.3.2.1 | None | ERR978748 | Other | lineage4.8 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR6045763 | Pre-XDR-TB | lineage2.2.1 | None | ERR5087596 | Other | La1.8.1 | None | SRR6964650 | Sensitive | lineage3 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR5087846 | Other | La1.8.1 | None | ERR978693 | Other | lineage4.8 | None | SRR5818426 | Other | lineage4.9 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR2512423 | Other | lineage4.1.1.3 | None | ERR911930 | Other | lineage4.8 | None | SRR7496471 | Sensitive | lineage4 | None | SRR6046246 | Other | lineage3 | None | ERR9117725 | Other | lineage4.1.1.1 | None | ERR978760 | RR-TB | lineage4.8 | None | ERR867572 | Other | lineage4.9 | None | SAMEA3450033 | Other | lineage4.8 | None | SRR7070329 | Other | lineage3 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | ERR4815816 | Other | lineage4.5 | gb | SRR18002985 | HR-TB | lineage2.2.1 | None | SRR6397815 | Other | lineage4.4.1.1 | None | ERR4769436 | Other | La1.3 | None | SRR20969475 | Other | lineage1.2.1.2 | None |
|---|
