TB-Profiler result

Run: ERR4818507
Summary

Run ID: ERR4818507

Sample name:

Date: 01-04-2023 15:35:44

Number of reads: 603893

Percentage reads mapped: 68.89

Strain: lineage4.1.2.1

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.1 Euro-American T;X;H None 1.0
lineage4.1.2 Euro-American T;H None 1.0
lineage4.1.2.1 Euro-American (Haarlem) T1;H1 RD182 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 0.13 rifampicin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.48 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491591 p.Lys270Met missense_variant 1.0
mshA 575679 p.Asn111Ser missense_variant 1.0
rpoB 760115 c.309C>T synonymous_variant 1.0
rpoB 761037 c.1231T>C synonymous_variant 0.12
rpoB 761051 c.1245G>C synonymous_variant 0.12
rpoB 761054 c.1248G>C synonymous_variant 0.12
rpoB 761057 c.1251G>C synonymous_variant 0.13
rpoB 761060 c.1254C>G synonymous_variant 0.12
rpoB 761102 c.1296A>G synonymous_variant 0.14
rpoB 761132 c.1326G>C synonymous_variant 0.13
rpoB 761133 c.1327T>C synonymous_variant 0.13
rpoB 761159 c.1353G>C synonymous_variant 0.15
rpoB 761165 c.1359G>C synonymous_variant 0.16
rpoC 762926 c.-444C>G upstream_gene_variant 0.14
rpoC 763486 c.117T>C synonymous_variant 0.11
rpoC 763492 c.123G>C synonymous_variant 0.11
rpoC 763496 p.Lys43Arg missense_variant 0.11
rpoC 763528 c.159G>T synonymous_variant 0.13
rpoC 763531 c.162G>C synonymous_variant 0.18
rpoC 763534 c.165T>C synonymous_variant 0.18
rpoC 763546 c.177A>G synonymous_variant 0.15
rpoC 763570 c.201G>C synonymous_variant 0.2
rpoC 763578 p.Phe70Tyr missense_variant 0.13
rpoC 763598 p.Arg77Lys missense_variant 0.12
rpoC 763606 c.237C>A synonymous_variant 0.12
rpoC 763615 c.246G>C synonymous_variant 0.11
rpoC 763622 p.Ala85Ser missense_variant 0.12
rpoC 763627 p.Lys86Asn missense_variant 0.12
rpoC 763630 c.261G>C synonymous_variant 0.12
rpoC 763633 c.264T>C synonymous_variant 0.14
rpoC 763642 c.273G>C synonymous_variant 0.15
rpoC 763648 c.279C>T synonymous_variant 0.15
rpoC 763657 p.Glu96Asp missense_variant 0.15
rpoC 763660 c.291T>G synonymous_variant 0.15
rpoC 763666 c.297G>C synonymous_variant 0.15
rpoC 763675 c.306C>G synonymous_variant 0.14
rpoC 763699 c.330G>T synonymous_variant 0.14
rpoC 763708 c.339G>C synonymous_variant 0.14
rpoC 764503 c.1134G>T synonymous_variant 0.11
rpoC 764509 c.1140G>C synonymous_variant 0.12
rpoC 764512 c.1143G>C synonymous_variant 0.11
rpoC 764521 c.1152T>C synonymous_variant 0.11
rpoC 764536 c.1167G>C synonymous_variant 0.11
rpoC 764543 p.Thr392Ala missense_variant 0.1
rpoC 764548 c.1179G>C synonymous_variant 0.1
rpoC 764566 c.1197C>G synonymous_variant 0.11
rpoC 764573 p.Leu402Ile missense_variant 0.17
rpoC 764578 c.1209C>G synonymous_variant 0.16
rpoC 764581 c.1212T>C synonymous_variant 0.17
rpoC 764582 p.Leu405Met missense_variant 0.18
rpoC 764593 c.1224C>T synonymous_variant 0.13
rpoC 764602 c.1233C>T synonymous_variant 0.27
rpoC 764605 c.1236G>T synonymous_variant 0.27
rpoC 764611 c.1242G>T synonymous_variant 0.27
rpoC 764647 c.1278C>T synonymous_variant 0.13
rpoC 764656 c.1287C>T synonymous_variant 0.13
rpoC 764662 c.1293G>C synonymous_variant 0.12
rpoC 764677 c.1308C>G synonymous_variant 0.11
rpoC 764678 p.Lys437Gln missense_variant 0.11
rpoC 764713 c.1344G>C synonymous_variant 0.11
rpoC 765150 p.Gly594Glu missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 777119 p.His454Gln missense_variant 0.16
mmpL5 777122 c.1359C>T synonymous_variant 0.17
mmpL5 777128 c.1353A>G synonymous_variant 0.17
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472068 n.223T>G non_coding_transcript_exon_variant 0.23
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.47
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.47
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.74
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.14
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.76
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.77
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.81
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.82
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.11
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.68
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.64
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.13
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.27
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.55
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.25
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.44
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.38
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.38
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.33
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.33
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.22
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.5
rrs 1472436 n.591G>T non_coding_transcript_exon_variant 0.38
rrs 1472437 n.592T>G non_coding_transcript_exon_variant 0.38
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.5
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.43
rrs 1472449 n.604C>T non_coding_transcript_exon_variant 0.33
rrs 1472450 n.605A>C non_coding_transcript_exon_variant 0.33
rrs 1472451 n.606C>T non_coding_transcript_exon_variant 0.43
rrs 1472462 n.617T>G non_coding_transcript_exon_variant 0.38
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.5
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 0.43
rrs 1472474 n.629C>G non_coding_transcript_exon_variant 0.43
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.5
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 0.33
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.44
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.56
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 0.43
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.67
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.45
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.29
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.42
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.42
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.52
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.52
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.48
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.48
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.37
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.12
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.42
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.56
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.4
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.19
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.73
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.84
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.28
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.51
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.5
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.39
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.4
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.89
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.85
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.54
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.39
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.46
rrs 1472686 n.841G>T non_coding_transcript_exon_variant 0.33
rrs 1472687 n.843dupT non_coding_transcript_exon_variant 0.62
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.74
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.75
rrs 1472690 n.845C>T non_coding_transcript_exon_variant 0.62
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.33
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.48
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.28
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.5
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.33
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.56
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.49
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.51
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.37
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.33
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.33
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.29
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.44
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.25
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.44
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.62
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.1
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.55
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.72
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.75
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.15
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.78
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.68
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 0.14
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.26
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.14
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.12
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.78
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.58
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.62
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.88
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.79
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.87
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.82
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.52
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.53
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.77
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.64
rrs 1473099 n.1254T>A non_coding_transcript_exon_variant 0.13
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.67
rrs 1473101 n.1256C>T non_coding_transcript_exon_variant 0.15
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.47
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.73
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.74
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.74
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.13
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.69
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.65
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.46
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.64
rrs 1473148 n.1303G>T non_coding_transcript_exon_variant 0.14
rrs 1473163 n.1318C>A non_coding_transcript_exon_variant 0.14
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.55
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.48
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.53
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.62
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.73
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.69
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.76
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.67
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.73
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.76
rrl 1473384 n.-274A>G upstream_gene_variant 0.21
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.5
rrl 1474253 n.596A>T non_coding_transcript_exon_variant 0.33
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.5
rrl 1474282 n.625G>T non_coding_transcript_exon_variant 0.33
rrl 1474287 n.630T>C non_coding_transcript_exon_variant 0.33
rrl 1474306 n.649A>T non_coding_transcript_exon_variant 0.29
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.22
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.38
rrl 1474315 n.658A>G non_coding_transcript_exon_variant 0.44
rrl 1474326 n.669T>A non_coding_transcript_exon_variant 0.18
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.18
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.38
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.5
rrl 1474355 n.698A>G non_coding_transcript_exon_variant 0.3
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.56
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.33
rrl 1474393 n.736A>G non_coding_transcript_exon_variant 0.33
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.4
rrl 1474409 n.756_776delACCCACACGCGCATACGCGCG non_coding_transcript_exon_variant 0.4
rrl 1474435 n.778G>T non_coding_transcript_exon_variant 0.4
rrl 1474437 n.781_782delAA non_coding_transcript_exon_variant 0.67
rrl 1474448 n.791T>C non_coding_transcript_exon_variant 0.5
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 1.0
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.88
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.88
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.25
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.75
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.78
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 1.0
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.89
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.7
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.18
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.17
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.82
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.18
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.2
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.55
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.33
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.38
rrl 1474634 n.977T>G non_coding_transcript_exon_variant 0.38
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 0.75
rrl 1474637 n.980C>G non_coding_transcript_exon_variant 0.38
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.75
rrl 1474643 n.986A>G non_coding_transcript_exon_variant 0.33
rrl 1474658 n.1001A>G non_coding_transcript_exon_variant 0.33
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 1.0
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 0.75
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.25
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 1.0
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 1.0
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 0.88
rrl 1474694 n.1037C>T non_coding_transcript_exon_variant 0.25
rrl 1474706 n.1049G>A non_coding_transcript_exon_variant 0.57
rrl 1474734 n.1077G>A non_coding_transcript_exon_variant 0.75
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.86
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.88
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.75
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.8
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.5
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.4
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.8
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 0.75
rrl 1475155 n.1498A>G non_coding_transcript_exon_variant 0.67
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 1.0
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.67
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.4
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.4
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.4
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.4
rrl 1475764 n.2107A>G non_coding_transcript_exon_variant 0.5
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 0.5
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.4
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.33
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.71
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.67
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.33
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.44
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.67
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.56
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.22
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.25
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.62
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.86
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.6
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.4
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.4
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.5
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.5
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.5
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.5
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.22
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.2
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.22
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.38
rrl 1476235 n.2578A>G non_coding_transcript_exon_variant 0.19
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.19
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.19
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.2
rrl 1476267 n.2610G>T non_coding_transcript_exon_variant 0.23
rrl 1476276 n.2619C>A non_coding_transcript_exon_variant 0.25
rrl 1476279 n.2622G>A non_coding_transcript_exon_variant 0.25
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.27
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.27
rrl 1476295 n.2638C>A non_coding_transcript_exon_variant 0.27
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.25
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.25
rrl 1476306 n.2649A>G non_coding_transcript_exon_variant 0.23
rrl 1476307 n.2650A>T non_coding_transcript_exon_variant 0.25
rrl 1476311 n.2654G>T non_coding_transcript_exon_variant 0.21
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.23
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.29
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.69
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.76
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.56
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.51
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.77
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.5
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.64
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.59
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.55
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.14
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.33
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.4
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.5
rrl 1476528 n.2871A>G non_coding_transcript_exon_variant 0.21
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.17
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.32
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.48
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.36
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.22
rrl 1476542 n.2885T>C non_coding_transcript_exon_variant 0.17
rrl 1476548 n.2891T>C non_coding_transcript_exon_variant 0.15
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.23
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.21
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.25
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.13
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.15
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.1
rpsA 1833970 c.429G>C synonymous_variant 0.13
rpsA 1834009 c.468C>T synonymous_variant 0.11
rpsA 1834012 c.471G>C synonymous_variant 0.11
rpsA 1834025 p.Gln162Glu missense_variant 0.1
rpsA 1834294 c.753G>C synonymous_variant 0.16
rpsA 1834298 p.Gln253Glu missense_variant 0.12
rpsA 1834306 c.765T>C synonymous_variant 0.11
rpsA 1834307 p.Asp256Gln missense_variant 0.1
rpsA 1834327 c.786G>T synonymous_variant 0.12
rpsA 1834348 c.807T>C synonymous_variant 0.1
rpsA 1834354 c.813G>C synonymous_variant 0.11
rpsA 1834357 c.816T>C synonymous_variant 0.11
rpsA 1834360 c.819G>C synonymous_variant 0.11
rpsA 1834361 c.820T>C synonymous_variant 0.11
rpsA 1834387 c.846C>T synonymous_variant 0.11
rpsA 1834411 c.870T>C synonymous_variant 0.12
rpsA 1834909 c.1368G>A synonymous_variant 0.25
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102207 p.Gly279Val missense_variant 0.11
PPE35 2169293 c.1320T>C synonymous_variant 0.11
PPE35 2169902 p.Leu237Phe missense_variant 0.14
PPE35 2169910 p.Asn235Tyr missense_variant 0.15
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518076 c.-39C>T upstream_gene_variant 1.0
kasA 2518387 c.275delG frameshift_variant 0.15
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474143 p.Trp46Tyr missense_variant 0.27
Rv3236c 3612915 c.202T>C synonymous_variant 0.14
Rv3236c 3613114 c.3G>A synonymous_variant 0.11
clpC1 4039484 c.1221T>G synonymous_variant 0.29
clpC1 4039829 p.Leu292Ile missense_variant 0.12
panD 4044181 p.Asp34Gly missense_variant 0.12
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0