EBG00000313339 - n.2856G>T
Drug resistance types
39 Sensitive
34 RR-TB
12 HR-TB
37 MDR-TB
16 Pre-XDR-TB
1 XDR-TB
184 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.1 | 6 |
| lineage4.8 | 33 |
| lineage2.2.1.1 | 5 |
| lineage4.3.3 | 16 |
| lineage1.2.2 | 2 |
| lineage3 | 24 |
| lineage4.9 | 59 |
| lineage4.1.2.1 | 18 |
| lineage2.2.1 | 42 |
| lineage4.2.2.2 | 6 |
| lineage6.3.1 | 1 |
| lineage4.2.1 | 7 |
| lineage4.1.2 | 6 |
| lineage4.3.1.1 | 6 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 11 |
| lineage4.3.4.1;lineage4.9 | 2 |
| lineage4.3.4.2;lineage4.9 | 1 |
| lineage4.8.2;lineage4.9 | 1 |
| lineage3.1.1 | 5 |
| lineage1.1.2 | 2 |
| lineage1.2.1.1 | 2 |
| lineage4.6.2.2 | 4 |
| lineage4.3 | 2 |
| lineage1.2.2.2 | 2 |
| lineage4.8.1 | 3 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage4.6 | 1 |
| lineage4.1.4 | 1 |
| lineage4.3.2 | 2 |
| lineage4.4.1.1.1 | 4 |
| lineage4.3.4.2 | 3 |
| lineage2.2.2 | 5 |
| lineage1.1.3.1 | 2 |
| lineage4.7 | 4 |
| lineage4.2.2 | 2 |
| lineage4.3.4.1 | 1 |
| lineage5.1.1 | 2 |
| lineage4.6.5 | 1 |
| lineage3.1.2.1 | 5 |
| lineage4.1.1.3 | 3 |
| lineage1.2.1.2.1 | 1 |
| lineage4.1.1.3.1 | 2 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.5 | 1 |
| lineage2.2;lineage4 | 1 |
| La1.8.1 | 1 |
| lineage4.8.2 | 1 |
| lineage4.1.3 | 1 |
| lineage6.1.2 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage4.1 | 1 |
| lineage3.1.1;lineage4 | 1 |
| 1 | |
| lineage4.3.4.2.1 | 1 |
| lineage4.6.1.2 | 1 |
| lineage1.1.3.2 | 1 |
| lineage6.1.3 | 1 |
| lineage3;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 323 |
Geographic prevalence
Country level data for this variant is available for 20 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR7069441 | Sensitive | lineage4.8 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | ERR10796563 | Other | lineage4.3.3 | None | ERR4818126 | Other | lineage1.2.2 | None | ERR4819528 | RR-TB | lineage3 | None | SRR5818386 | Other | lineage4.9 | None | ERR10796555 | Other | lineage4.1.2.1 | None | SRR9971223 | Other | lineage2.2.1 | None | ERR4822150 | Other | lineage4.8 | gb | ERR867572 | Other | lineage4.9 | None | SRR14801652 | HR-TB | lineage4.3.3 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | ERR10796596 | Other | lineage4.9 | None | ERR4818440 | Other | lineage6.3.1 | None | SRR5818464 | Other | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR4818977 | Other | lineage4.1.2.1 | None | SRR11342643 | MDR-TB | lineage4.1.1.1 | None | ERR4816531 | Other | lineage4.1.2 | None | ERR4819198 | Other | lineage2.2.1 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | ERR3276170 | Other | lineage4.1.2.1 | nl | ERR9117812 | Other | lineage4.3.1.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | SRR18213726 | Other | lineage3 | None | ERR10796577 | Other | lineage4.9 | None | SRR6045591 | Other | lineage4.1.2.1 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR10796558 | Sensitive | lineage4.3.4.1;lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR10796631 | Other | lineage4.3.4.2;lineage4.9 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | SRR19303985 | Sensitive | lineage4.8 | None | ERR10796636 | Other | lineage4.1.2.1 | None | SRR6044904 | Other | lineage3 | None | SRR1183531 | Other | lineage4.9 | None | SRR18003052 | Other | lineage2.2.1.1 | None | ERR4820075 | Other | lineage4.1.2.1 | None | ERR10796598 | Other | lineage4.9 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR10315693 | RR-TB | lineage4.1.2 | None | SRR1180047 | Other | lineage4.9 | None | SRR1180569 | Sensitive | lineage4.9 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR3675261 | Other | lineage1.2.1.1 | None | SRR11342676 | HR-TB | lineage4.6.2.2 | None | ERR4818691 | Other | lineage4.8 | None | ERR4814681 | Other | lineage2.2.1 | None | SRR7069839 | Other | lineage4.8 | None | ERR2514351 | Sensitive | lineage3 | gb | ERR10796593 | Other | lineage4.3 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002908 | Other | lineage2.2.1 | None | ERR867521 | MDR-TB | lineage2.2.1 | None | SRR19241806 | Sensitive | lineage4.1.2.1 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816856 | Other | lineage4.1.2.1 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR1180831 | Other | lineage4.9 | None | ERR10796576 | Sensitive | lineage4.9 | None | SRR19303805 | Sensitive | lineage4.8 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | SRR7070144 | Other | lineage4.8 | None | SRR1183373 | Other | lineage4.9 | None | ERR4820151 | Other | lineage4.8 | None | SRR7070369 | Other | lineage1.2.2.2 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | ERR10796635 | Other | lineage4.8 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR6044936 | Other | lineage4.6 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4820736 | Sensitive | lineage4.1.2.1 | gb | ERR9901813 | Sensitive | lineage4.1.4 | None | SRR7070320 | Other | lineage4.8 | None | SRR7070223 | HR-TB | lineage3 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR7069931 | Other | lineage4.2.2.2 | None | SRR1183181 | Sensitive | lineage4.9 | None | SRR1181589 | Other | lineage4.9 | None | SRR1183438 | Other | lineage4.9 | None | ERR10796561 | Other | lineage4.3.2 | None | ERR4816800 | Other | lineage4.8 | gb | ERR4819017 | Other | lineage3 | None | SRR10315707 | MDR-TB | lineage4.4.1.1.1 | None | ERR2513082 | Other | lineage4.1.2.1 | gb | SRR1181490 | Other | lineage4.9 | None | SRR7070553 | Other | lineage3 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR1182958 | Other | lineage4.9 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR4814362 | Other | lineage4.8 | None | ERR10796599 | Other | lineage4.8 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR10796633 | Other | lineage4.3.4.2 | None | ERR4821119 | Other | lineage4.4.1.1 | None | ERR4815923 | Sensitive | lineage4.8 | None | ERR867575 | Other | lineage4.9 | None | ERR2514943 | Sensitive | lineage4.8 | gb | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR7070446 | Other | lineage3 | None | SRR1183684 | Other | lineage4.9 | None | SRR18002872 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | ERR4816610 | Other | lineage4.3.3 | None | ERR4819772 | Other | lineage1.1.3.1 | None | ERR10796620 | Other | lineage4.1.1.1 | None | SRR6045267 | RR-TB | lineage4.8 | None | ERR10796634 | Other | lineage4.7 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR7070479 | Other | lineage4.1.2 | None | SRR11342682 | Other | lineage4.1.2 | None | ERR4820720 | Other | lineage4.1.2.1 | None | SRR10315579 | Other | lineage2.2.1.1 | None | DRR188816 | Other | lineage4.2.2 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR11342686 | MDR-TB | lineage4.8 | None | ERR2513298 | Sensitive | lineage4.8 | gb | ERR4818988 | Other | lineage1.2.2 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | ERR867554 | Other | lineage4.3.4.1 | None | ERR10796559 | Other | lineage4.9 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | SRR1183213 | Other | lineage4.9 | None | ERR4818570 | Other | lineage4.3.3 | None | SRR1182900 | Sensitive | lineage4.9 | None | ERR10796572 | Other | lineage4.3.4.1;lineage4.9 | None | SRR1182878 | Other | lineage4.9 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR1181264 | Sensitive | lineage4.9 | None | ERR4821286 | Other | lineage4.8 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | ERR4819096 | Other | lineage4.4.1.1 | None | ERR4814911 | Other | lineage4.3.3 | None | SRR7070329 | Other | lineage3 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | ERR502517 | Other | lineage5.1.1 | None | SRR6045071 | Other | lineage4.3.1.1 | None | SRR5818572 | Sensitive | lineage4.2.2.2 | None | SRR6046359 | Other | lineage4.7 | None | ERR10796578 | Other | lineage2.2.1 | None | SRR7069137 | Other | lineage4.8 | None | ERR9117788 | Other | lineage3 | None | SRR6046668 | Sensitive | lineage1.1.2 | gb | SRR1181299 | Other | lineage4.9 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR1183548 | Other | lineage4.9 | None | SRR6045422 | Other | lineage4.3.1.1 | None | SRR1181569 | Other | lineage4.9 | None | ERR4815467 | Other | lineage3 | None | SRR6046848 | Other | lineage4.6.5 | None | ERR4820891 | Sensitive | lineage4.9 | gb | SRR7069518 | Other | lineage4.8 | None | SRR1173719 | Other | lineage4.9 | None | SRR11342638 | MDR-TB | lineage4.4.1.1.1 | None | SRR7070571 | Sensitive | lineage3 | None | SRR7069648 | Other | lineage4.6.2.2 | None | ERR867538 | Other | lineage4.2.2.2 | None | ERR2446445 | Sensitive | lineage2.2.1 | nl | ERR2886463 | Sensitive | lineage2.2.1 | None | ERR4814930 | Other | lineage4.4.1.1 | None | SRR1180024 | Other | lineage4.9 | None | SRR1183091 | Other | lineage4.9 | None | SRR11349153 | RR-TB | lineage4.1.1.1 | None | ERR4821679 | Other | lineage4.3.3 | None | SRR7069097 | Other | lineage3.1.2.1 | None | SRR7069027 | MDR-TB | lineage4.3.4.2 | None | ERR4820256 | Other | lineage2.2.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR1180687 | Other | lineage4.9 | None | ERR4821214 | Other | lineage1.2.1.2.1 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR1173310 | Other | lineage3.1.1 | None | ERR867571 | Other | lineage4.9 | None | ERR2509886 | Other | lineage3 | None | ERR3275465 | Sensitive | lineage2.2.1 | nl | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR1180503 | Other | lineage4.9 | None | ERR9117760 | HR-TB | lineage4.3 | None | SRR1183281 | Other | lineage4.9 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR22048536 | Other | lineage4.3.3 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002961 | Other | lineage2.2.1 | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | SRR5818388 | Other | lineage4.9 | None | SRR7070602 | Other | lineage4.2.1 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | SRR7069319 | Other | lineage4.5 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6046815 | Other | lineage3 | None | ERR4819641 | Other | lineage4.6.2.2 | None | SRR6046291 | Other | lineage3 | None | SRR18002933 | Other | lineage2.2.1 | None | ERR2512841 | HR-TB | lineage2.2.1 | gb | SRR18909918 | Other | lineage2.2.1.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR7070469 | Other | lineage4.3.1.1 | None | ERR4829328 | Other | lineage2.2.1 | None | SRR1182954 | Other | lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | ERR3439489 | RR-TB | La1.8.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR867574 | Other | lineage4.9 | None | SRR6045603 | Other | lineage4.1.1.3 | None | ERR867573 | Other | lineage4.9 | None | SRR6046343 | Other | lineage2.2.1 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR5818399 | Sensitive | lineage4.9 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | SRR19304094 | Other | lineage6.1.2 | None | SRR1180686 | Other | lineage4.9 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR7070293 | Other | lineage4.8 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | SRR6044983 | Other | lineage3.1.1 | None | ERR10796565 | Other | lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR7069193 | Other | lineage4.3.1.1 | None | SRR19303876 | Other | lineage4.7 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | ERR751345 | Other | lineage5.1.1 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | SRR6046616 | Other | lineage4.3.1.1 | None | ERR2515055 | Sensitive | lineage3 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | ERR4817189 | Other | lineage4.7 | None | ERR867544 | Other | lineage4.9 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | ERR4817294 | Other | lineage4.1.2 | None | SRR7070419 | Other | lineage3 | None | ERR4821704 | Other | lineage4.3.3 | None | SRR1180578 | Other | lineage4.9 | None | SRR1180647 | Other | lineage4.9 | None | ERR4829337 | Sensitive | lineage4.8 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR4815572 | Other | lineage4.1.2.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR4816667 | Other | lineage2.2.2 | None | ERR4814623 | Sensitive | lineage4.8 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR1183339 | Other | lineage4.9 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | SRR18003023 | Other | lineage2.2.1 | None | SRR1183686 | Sensitive | lineage4.9 | None | SRR15276982 | XDR-TB | lineage3 | None | ERR4821054 | Sensitive | lineage3 | None | ERR2514565 | Sensitive | lineage3.1.2.1 | gb | ERR4814617 | Other | lineage1.1.3.1 | None | SRR1183152 | Other | lineage4.9 | None | ERR4817915 | Other | lineage4.9 | None | ERR4814896 | Other | lineage2.2.1.1 | None | ERR4815502 | Other | lineage4.1 | None | ERR2027230 | Other | lineage4.2.2.2 | None | ERR4818507 | Other | lineage4.1.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR6046275 | Other | lineage3.1.1;lineage4 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR4821761 | Other | lineage3 | gb | ERR4817060 | Other | None | SRR7069033 | Sensitive | lineage4.2.1 | None | ERR4820742 | Sensitive | lineage4.3.4.2.1 | None | ERR4818407 | Other | lineage4.3.2 | None | ERR4819166 | Other | lineage3 | gb | ERR4815452 | Other | lineage4.3.3 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | ERR2512606 | HR-TB | lineage3 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR7069347 | Other | lineage4.1.2.1 | None | SRR7070134 | Other | lineage3.1.1 | None | ERR4829247 | MDR-TB | lineage4.3.3 | None | ERR4818897 | Other | lineage4.1.2.1 | gb | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816310 | HR-TB | lineage4.6.1.2 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | SRR9971372 | MDR-TB | lineage4.1.1.1 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR2513830 | RR-TB | lineage4.8 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR4821917 | Sensitive | lineage1.1.3.2 | gb | ERR10796626 | Other | lineage4.1.2.1 | None | SRR3675552 | Other | lineage4.9 | None | SRR6046117 | Other | lineage4.9 | None | SRR11342695 | MDR-TB | lineage4.8 | None | ERR3806588 | Other | lineage6.1.3 | None | ERR4818050 | Sensitive | lineage4.6.2.2 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR1183190 | Other | lineage4.9 | None | SRR3675230 | Other | lineage3;lineage4 | None | ERR2851359 | Other | lineage4.9 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | ERR4819002 | HR-TB | lineage4.8 | None | SRR7069800 | Other | lineage3.1.2.1 | None | SRR7070535 | HR-TB | lineage4.1.2.1 | None | SRR1180113 | Other | lineage4.9 | None |
|---|
