TB-Profiler result

Run: ERR751345

Summary

Run ID: ERR751345

Sample name:

Date: 02-04-2023 04:25:25

Number of reads: 3876190

Percentage reads mapped: 82.13

Strain: lineage5.1.1

Drug-resistance: Other


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage5 West-Africa 1 AFRI_2;AFRI_3 RD711 1.0
lineage5.1.1 West-Africa 1 AFRI_2;AFRI_3 RD711 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.43 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.34 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.27 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5150 c.-89delC upstream_gene_variant 0.99
gyrB 6446 p.Ala403Ser missense_variant 1.0
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 0.99
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9566 c.2265C>T synonymous_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 761015 c.1209G>C synonymous_variant 0.11
rpoB 761027 c.1221A>G synonymous_variant 0.14
rpoB 761037 c.1231_1233delTTGinsCTC synonymous_variant 0.18
rpoB 761064 p.Ala420Ser missense_variant 0.22
rpoB 761096 c.1290G>C synonymous_variant 0.22
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.22
rpoB 761102 c.1296A>G synonymous_variant 0.22
rpoB 762002 c.2196C>G synonymous_variant 0.14
rpoB 762003 p.Asn733Gln missense_variant 0.14
rpoB 762011 c.2205G>C synonymous_variant 0.14
rpoB 762015 p.Glu737Gln missense_variant 0.14
rpoB 762020 p.Glu738Asp missense_variant 0.14
rpoB 762026 c.2220G>C synonymous_variant 0.16
rpoB 762030 p.Thr742Ser missense_variant 0.15
rpoB 762053 c.2247T>C synonymous_variant 0.15
rpoB 762057 p.Ile751Val missense_variant 0.13
rpoC 762917 c.-453C>G upstream_gene_variant 0.13
rpoB 762922 p.Ser1039Cys missense_variant 0.11
rpoC 762926 c.-444C>G upstream_gene_variant 0.11
rpoC 762929 c.-441G>C upstream_gene_variant 0.11
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763280 c.-90C>T upstream_gene_variant 1.0
rpoC 763501 p.Asp44Glu missense_variant 0.11
rpoC 763507 c.138G>C synonymous_variant 0.11
rpoC 763517 p.Lys50Arg missense_variant 0.1
rpoC 763537 c.168C>G synonymous_variant 0.1
rpoC 763546 c.177A>G synonymous_variant 0.11
rpoC 763551 p.Tyr61Ser missense_variant 0.12
rpoC 763573 c.204G>C synonymous_variant 0.14
rpoC 763621 c.252C>G synonymous_variant 0.12
rpoC 763624 c.255C>G synonymous_variant 0.12
rpoC 763625 p.Lys86Gly missense_variant 0.12
rpoC 763633 c.264T>C synonymous_variant 0.12
rpoC 764581 c.1212T>C synonymous_variant 0.1
rpoC 764602 c.1233C>G synonymous_variant 0.13
rpoC 764605 c.1236G>C synonymous_variant 0.13
rpoC 764611 c.1242G>T synonymous_variant 0.14
rpoC 764620 c.1251G>C synonymous_variant 0.14
rpoC 764632 c.1263T>C synonymous_variant 0.14
rpoC 764644 c.1275G>C synonymous_variant 0.15
rpoC 764650 c.1281G>T synonymous_variant 0.15
rpoC 764662 c.1293G>C synonymous_variant 0.16
rpoC 764701 c.1332C>G synonymous_variant 0.17
rpoC 764705 p.Leu446Ala missense_variant 0.16
rpoC 764716 c.1347G>C synonymous_variant 0.18
rpoC 764722 c.1353G>C synonymous_variant 0.18
rpoC 764731 c.1362G>C synonymous_variant 0.17
rpoC 764737 c.1368G>C synonymous_variant 0.15
rpoC 764749 c.1380G>C synonymous_variant 0.14
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
fbiC 1302899 c.-32A>G upstream_gene_variant 1.0
Rv1258c 1407273 p.Asp23Val missense_variant 0.99
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.33
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.33
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.38
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.36
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.36
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.55
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.58
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.53
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.48
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.36
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.1
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.21
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.17
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.11
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.29
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.5
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.5
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.45
rrs 1472582 n.737G>A non_coding_transcript_exon_variant 0.45
rrs 1472583 n.738T>C non_coding_transcript_exon_variant 0.45
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.45
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.53
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.5
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.27
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.27
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.28
rrs 1472673 n.828T>A non_coding_transcript_exon_variant 0.25
rrs 1472674 n.829T>C non_coding_transcript_exon_variant 0.25
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.25
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.27
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.27
rrs 1472685 n.840G>A non_coding_transcript_exon_variant 0.27
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.3
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.35
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.41
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.41
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.33
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.2
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.4
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.41
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.44
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.44
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.43
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.46
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.41
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.35
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.29
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.3
rrs 1472991 n.1146G>A non_coding_transcript_exon_variant 0.33
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.35
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.34
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.34
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.38
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.35
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.35
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.34
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.33
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.29
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.3
rrs 1473127 n.1282G>A non_coding_transcript_exon_variant 0.29
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.33
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.35
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.35
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.24
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 0.28
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.25
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.26
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.32
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.24
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.25
rrs 1473319 n.1474C>T non_coding_transcript_exon_variant 0.25
rrs 1473320 n.1475G>A non_coding_transcript_exon_variant 0.24
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.1
rrl 1473928 n.271T>C non_coding_transcript_exon_variant 0.15
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.25
rrl 1474153 n.496C>G non_coding_transcript_exon_variant 0.36
rrl 1474166 n.509G>C non_coding_transcript_exon_variant 0.44
rrl 1474179 n.522C>T non_coding_transcript_exon_variant 0.44
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.44
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.44
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.47
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.67
rrl 1474202 n.545T>A non_coding_transcript_exon_variant 0.67
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.69
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.56
rrl 1474252 n.595T>A non_coding_transcript_exon_variant 0.53
rrl 1474253 n.596A>T non_coding_transcript_exon_variant 0.53
rrl 1474280 n.623C>T non_coding_transcript_exon_variant 0.25
rrl 1474281 n.624A>G non_coding_transcript_exon_variant 0.25
rrl 1474316 n.659T>C non_coding_transcript_exon_variant 0.17
rrl 1474317 n.660G>A non_coding_transcript_exon_variant 0.17
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.18
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.18
rrl 1474353 n.696A>C non_coding_transcript_exon_variant 0.17
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.25
rrl 1474355 n.698A>C non_coding_transcript_exon_variant 0.17
rrl 1474356 n.699T>A non_coding_transcript_exon_variant 0.17
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 0.17
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.15
rrl 1474381 n.724T>A non_coding_transcript_exon_variant 0.17
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.17
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.15
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.28
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.31
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.31
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.4
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.4
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.38
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.52
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.44
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.44
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.44
rrl 1474660 n.1003G>A non_coding_transcript_exon_variant 0.53
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 0.43
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.41
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 0.43
rrl 1474690 n.1033C>T non_coding_transcript_exon_variant 0.5
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 0.52
rrl 1474717 n.1060_1061insGTGAG non_coding_transcript_exon_variant 0.52
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.54
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.64
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.68
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.75
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.77
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 0.8
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.79
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.82
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.82
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.84
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.84
rrl 1474869 n.1212G>T non_coding_transcript_exon_variant 0.71
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.57
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.5
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.5
rrl 1474938 n.1281G>A non_coding_transcript_exon_variant 0.45
rrl 1474946 n.1289C>T non_coding_transcript_exon_variant 0.5
rrl 1474948 n.1291C>T non_coding_transcript_exon_variant 0.4
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 0.5
rrl 1475108 n.1451C>T non_coding_transcript_exon_variant 0.4
rrl 1475111 n.1454G>A non_coding_transcript_exon_variant 0.4
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.5
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.5
rrl 1475119 n.1462C>T non_coding_transcript_exon_variant 0.5
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 0.6
rrl 1475129 n.1472G>A non_coding_transcript_exon_variant 0.6
rrl 1475173 n.1516A>T non_coding_transcript_exon_variant 0.22
rrl 1475175 n.1518G>C non_coding_transcript_exon_variant 0.22
rrl 1475508 n.1851A>T non_coding_transcript_exon_variant 0.16
rrl 1475516 n.1859T>A non_coding_transcript_exon_variant 0.18
rrl 1475517 n.1860C>T non_coding_transcript_exon_variant 0.18
rrl 1475519 n.1862G>A non_coding_transcript_exon_variant 0.18
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.18
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.16
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.16
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.16
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.14
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.14
rrl 1475548 n.1891C>T non_coding_transcript_exon_variant 0.14
rrl 1475549 n.1892T>C non_coding_transcript_exon_variant 0.14
rrl 1475562 n.1905C>T non_coding_transcript_exon_variant 0.13
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.22
rrl 1475655 n.1998T>G non_coding_transcript_exon_variant 0.28
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.29
rrl 1475752 n.2095C>G non_coding_transcript_exon_variant 0.24
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.21
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.23
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 0.25
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 0.25
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.24
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.24
rrl 1475776 n.2119G>C non_coding_transcript_exon_variant 0.24
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.55
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.48
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.44
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.43
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.5
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.5
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.49
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.41
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.41
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.36
rrl 1475991 n.2334T>A non_coding_transcript_exon_variant 0.35
rrl 1475996 n.2339T>G non_coding_transcript_exon_variant 0.35
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.36
rrl 1476123 n.2466G>T non_coding_transcript_exon_variant 0.17
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.24
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.44
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.45
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.46
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.47
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.44
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.38
rrl 1476226 n.2569G>A non_coding_transcript_exon_variant 0.38
rrl 1476251 n.2594T>A non_coding_transcript_exon_variant 0.29
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.27
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.27
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.26
rrl 1476422 n.2765C>G non_coding_transcript_exon_variant 0.53
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.5
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.51
rrl 1476431 n.2774G>C non_coding_transcript_exon_variant 0.5
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.22
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.22
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.22
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.22
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.24
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.24
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.21
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.22
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.2
rrl 1476544 n.2887T>A non_coding_transcript_exon_variant 0.2
rrl 1476566 n.2909A>T non_coding_transcript_exon_variant 0.29
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.31
rrl 1476577 n.2920T>A non_coding_transcript_exon_variant 0.15
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.11
inhA 1673338 c.-864G>A upstream_gene_variant 1.0
inhA 1674769 p.Ala190Ser missense_variant 0.99
rpsA 1833697 c.156C>G synonymous_variant 0.11
rpsA 1833721 c.180A>G synonymous_variant 0.13
rpsA 1833724 c.183C>T synonymous_variant 0.14
rpsA 1833727 c.186G>C synonymous_variant 0.14
rpsA 1833979 c.438T>C synonymous_variant 0.13
rpsA 1833985 c.444G>C synonymous_variant 0.16
rpsA 1833994 c.453G>C synonymous_variant 0.15
rpsA 1833997 c.456G>C synonymous_variant 0.15
rpsA 1834000 c.459G>C synonymous_variant 0.15
rpsA 1834009 c.468C>G synonymous_variant 0.15
rpsA 1834012 c.471G>C synonymous_variant 0.14
rpsA 1834015 c.474G>C synonymous_variant 0.15
rpsA 1834024 c.483G>C synonymous_variant 0.18
rpsA 1834030 c.489C>G synonymous_variant 0.18
rpsA 1834034 p.Ile165Val missense_variant 0.2
rpsA 1834069 c.528G>C synonymous_variant 0.18
rpsA 1834090 c.549G>C synonymous_variant 0.11
rpsA 1834093 c.552G>C synonymous_variant 0.11
rpsA 1834099 c.558C>G synonymous_variant 0.12
rpsA 1834261 c.720A>G synonymous_variant 0.12
rpsA 1834286 p.Ser249Gly missense_variant 0.11
rpsA 1834294 c.753G>C synonymous_variant 0.12
rpsA 1834298 p.Gln253Glu missense_variant 0.12
rpsA 1834303 c.762T>C synonymous_variant 0.13
rpsA 1834306 c.765T>C synonymous_variant 0.13
rpsA 1834327 c.786G>C synonymous_variant 0.18
rpsA 1834348 c.807T>C synonymous_variant 0.15
rpsA 1834354 c.813G>C synonymous_variant 0.13
rpsA 1834357 c.816T>C synonymous_variant 0.13
rpsA 1834360 c.819G>C synonymous_variant 0.13
rpsA 1834361 c.820T>C synonymous_variant 0.13
rpsA 1834366 c.825A>G synonymous_variant 0.11
rpsA 1834378 c.837T>G synonymous_variant 0.13
rpsA 1834384 c.843A>G synonymous_variant 0.13
rpsA 1834395 p.Arg285Gln missense_variant 0.13
rpsA 1834408 c.867C>G synonymous_variant 0.12
rpsA 1834411 c.870T>C synonymous_variant 0.13
rpsA 1834423 c.882G>T synonymous_variant 0.13
rpsA 1834427 p.Ile296Val missense_variant 0.12
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.15
rpsA 1834456 c.915T>C synonymous_variant 0.16
rpsA 1834459 c.918G>C synonymous_variant 0.16
rpsA 1834468 c.927A>G synonymous_variant 0.17
rpsA 1834474 c.933C>G synonymous_variant 0.18
rpsA 1834486 p.Glu315Asp missense_variant 0.13
rpsA 1834489 c.948T>C synonymous_variant 0.14
rpsA 1834501 c.960G>C synonymous_variant 0.12
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2101773 p.Thr424Pro missense_variant 0.98
ndh 2101921 c.1122G>A synonymous_variant 0.99
ndh 2103112 c.-70G>T upstream_gene_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2290062 c.-821G>A upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 1.0
ald 3087084 c.266delA frameshift_variant 1.0
ald 3087184 c.368_373delCCGACG disruptive_inframe_deletion 1.0
Rv3083 3449004 c.502_504delCAC conservative_inframe_deletion 1.0
Rv3083 3449644 p.Ala381Thr missense_variant 0.99
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
alr 3840932 c.489C>T synonymous_variant 1.0
rpoA 3878493 c.15G>A synonymous_variant 1.0
ddn 3986987 c.144G>T synonymous_variant 1.0
ddn 3987180 p.Asp113Asn missense_variant 1.0
clpC1 4038857 c.1848C>A synonymous_variant 0.15
clpC1 4040824 c.-120C>T upstream_gene_variant 1.0
embC 4239843 c.-20A>C upstream_gene_variant 1.0
embC 4240671 p.Thr270Ile missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4244220 c.988C>T synonymous_variant 1.0
embA 4244635 p.Val468Ala missense_variant 1.0
embA 4245147 p.Pro639Ser missense_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
aftB 4269630 c.-794G>A upstream_gene_variant 1.0
ethR 4326928 c.-621G>A upstream_gene_variant 1.0
ethA 4327103 p.Gly124Asp missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407748 p.Leu152Ser missense_variant 1.0