EBG00000313339 - n.2344T>C


Drug resistance types
21 Sensitive 38 RR-TB 16 HR-TB 78 MDR-TB 34 Pre-XDR-TB 2 XDR-TB 183 Other
lineage Counts
lineage Count
lineage2.2.1 92
lineage4.9 65
lineage4.6.1.2 5
lineage4.7 3
lineage3 18
lineage4.8 22
lineage4.2.1 11
lineage4.3.4.1 5
lineage4.1.2.1 14
lineage4.2.1.1 2
lineage4.1.1.2 1
lineage3;lineage4 2
lineage2.2.2 8
lineage4.3.4.2.1 2
lineage4.3.3 7
lineage4.3.2 1
lineage5.1.1 1
lineage1.2.2.2 4
lineage4.2.2.2 3
lineage4.1.3 1
lineage4.4.1.1.1 3
lineage4.1.1.3 12
lineage4.3 1
lineage4.4.1.1 5
lineage4.3.4.2 2
lineage3.1.1 7
La1.8.1 5
La1.7.1 3
lineage4.3.2.1 2
lineage4.1.1.3.1 2
lineage3.1.3 1
lineage4.4 2
lineage4.6.2.2 1
lineage4.1.1.1 6
lineage4.1.2;lineage4.9 1
lineage1.2.1.2 1
lineage4.8.1 4
lineage3;lineage4.2.2.2 1
lineage2.2.1;lineage4 2
lineage4.3.3;lineage4.8 4
lineage2.1;lineage4.9 1
lineage2.2;lineage4 1
lineage1.1.2 2
lineage1.2.1.1 1
lineage4.5 2
lineage4.4.2 4
lineage4.3.3;lineage4.9 1
lineage4.1.2 2
lineage6.1.3 1
lineage3.1.1;lineage4.9 1
lineage2.2.2;lineage4 1
lineage4.2.2 2
lineage1.1.3.1 2
lineage3.1.2 1
lineage3.1.2.1 2
lineage3.1.2.2 1
lineage4.1.1.3.1;lineage4.9 1
lineage2.2.1;lineage4.8 1
lineage4 1
lineage4.4.1.2 1
La1.3 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage6 1
lineage3.1.2.1;lineage4.9 1
La2 1
lineage2.2.1.1 1
lineage4.3.1.1 1
lineage2;lineage4 1
La1.7;M.canetti;lineage4.9 1
lineage4.9;lineage7 1
lineage2.2.1;lineage4.9 1
spoligotype Counts
spoligotype Count
None 372
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR18003030 Pre-XDR-TB lineage2.2.1 None
SRR5163959 Other lineage4.9 None
SRR1049674 HR-TB lineage2.2.1 None
SRR1140712 MDR-TB lineage4.6.1.2 None
SRR7645928 Other lineage4.7 None
SRR7068912 Pre-XDR-TB lineage2.2.1 None
SRR1180440 Other lineage4.9 None
SRR6046815 Other lineage3 None
SRR3619764 Pre-XDR-TB lineage2.2.1 None
SRR19303820 RR-TB lineage4.8 None
SRR7645977 MDR-TB lineage4.2.1 None
SRR6045957 Other lineage4.9 None
SRR7131123 Other lineage4.8 None
SRR7645973 Other lineage4.3.4.1 None
SRR7131147 Other lineage4.1.2.1 None
SRR7070521 Other lineage4.2.1.1 None
ERR4132460 MDR-TB lineage2.2.1 None
ERR2027257 Other lineage4.1.2.1 None
ERR2229198 Sensitive lineage4.8 None
ERR2513405 Other lineage2.2.1 None
ERR8975044 Other lineage4.1.1.2 None
SRR3675230 Other lineage3;lineage4 None
DRR184903 Sensitive lineage2.2.2 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR4821811 Sensitive lineage4.9 None
SRR6982141 Other lineage4.3.3 None
ERR4972567 MDR-TB lineage4.3.2 None
ERR4872322 Pre-XDR-TB lineage2.2.1 None
ERR751345 Other lineage5.1.1 None
ERR5917985 MDR-TB lineage2.2.1 None
ERR5979407 Other lineage3 None
ERR736820 MDR-TB lineage1.2.2.2 None
ERR867522 Pre-XDR-TB lineage2.2.1 None
ERR867525 Pre-XDR-TB lineage2.2.1 None
SRR10315558 Sensitive lineage2.2.1 None
SRR18003047 MDR-TB lineage2.2.1 None
SRR11342687 RR-TB lineage4.2.2.2 None
SRR11342664 MDR-TB lineage2.2.2 None
SRR11342671 RR-TB lineage4.1.3 None
SRR11342644 MDR-TB lineage4.4.1.1.1 None
SRR11349201 MDR-TB lineage4.1.1.3 None
SRR12062533 Pre-XDR-TB lineage2.2.1 None
ERR867542 HR-TB lineage4.3 None
SRR7131145 Other lineage4.1.2.1 None
SRR11342698 RR-TB lineage4.4.1.1 None
SRR11342673 RR-TB lineage4.3.4.2 None
SRR11342660 MDR-TB lineage2.2.1 None
SRR11342640 MDR-TB lineage4.3.3 None
ERR867527 Pre-XDR-TB lineage2.2.1 None
ERR9117827 Other lineage1.2.2.2 None
ERR9119733 MDR-TB lineage2.2.1 None
ERR4596904 MDR-TB lineage3.1.1 None
SRR18002909 MDR-TB lineage2.2.1 None
SRR18002941 RR-TB lineage2.2.1 None
SRR18002999 Pre-XDR-TB lineage2.2.1 None
SRR18003002 MDR-TB lineage2.2.1 None
SRR12634609 MDR-TB lineage3.1.1 None
SRR5818647 Other lineage4.3.4.2.1 None
SRR19304104 Other lineage4.8 None
SRR18002874 MDR-TB lineage2.2.1 None
SRR18002976 Other lineage2.2.1 None
SRR18002987 Other lineage2.2.1 None
SRR18002998 Pre-XDR-TB lineage2.2.2 None
SRR18003042 Other lineage2.2.1 None
SRR18003049 Other lineage2.2.1 None
SRR18003015 MDR-TB lineage2.2.1 None
ERR5311077 Other La1.8.1 None
SRR19303815 Other lineage4.8 None
SRR6045464 Other lineage4.1.1.3 None
SRR21469202 Other La1.7.1 None
SRR6046376 Other lineage3 None
SRR14782539 MDR-TB lineage4.2.1 None
SRR21727760 Other lineage2.2.1 None
SRR18002937 Other lineage2.2.1 None
ERR9117759 Other lineage3 None
SRR18003012 Pre-XDR-TB lineage2.2.1 None
SRR3619841 Pre-XDR-TB lineage2.2.1 None
SRR21469200 Other La1.7.1 None
SRR22175249 Pre-XDR-TB lineage2.2.1 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR5007193 RR-TB lineage4.1.1.3.1 None
SRR6045613 Other lineage3.1.3 None
ERR3797062 RR-TB lineage4.9 None
ERR1023509 Other lineage4.9 None
SRR7645906 Other lineage2.2.1 None
SRR7645972 MDR-TB lineage4.2.1 None
SRR6824501 Pre-XDR-TB lineage2.2.1 None
ERR4820484 Sensitive lineage4.8 None
SRR3675245 Other lineage4.1.2.1 None
SRR5341365 Pre-XDR-TB lineage3 None
SRR6044787 Sensitive lineage4.4 None
SRR6046343 Other lineage2.2.1 None
SRR6982324 Sensitive lineage3.1.1 None
SRR6046442 Other lineage3 None
SRR7755645 Pre-XDR-TB lineage2.2.1 None
SRR1175473 Other lineage4.9 None
SRR5818398 Other lineage4.9 None
SRR11342676 HR-TB lineage4.6.2.2 None
SRR8758877 MDR-TB lineage4.1.1.1 None
ERR502470 RR-TB lineage4.9 None
ERR867571 Other lineage4.9 None
SRR6982246 Sensitive lineage4.1.2;lineage4.9 None
SRR1196478 Other lineage4.9 None
SRR7131195 Other lineage2.2.1 None
SRR5818452 Other lineage4.9 None
SRR19303899 Other lineage3 None
SRR1049582 MDR-TB lineage4.6.1.2 None
SRR7645971 Other lineage2.2.1 None
SRR7131297 Other lineage1.2.1.2 None
SRR1181256 Other lineage4.9 None
SRR5818388 Other lineage4.9 None
SRR16156804 Sensitive lineage4.9 None
SRR11342693 MDR-TB lineage4.8.1 None
SRR1175474 Other lineage4.9 None
SRR5818459 Other lineage4.9 None
SRR5818694 Other lineage3;lineage4.2.2.2 None
SRR18002947 MDR-TB lineage2.2.1 None
SRR1175472 RR-TB lineage4.3.4.1 None
SRR7070223 HR-TB lineage3 None
SRR7069347 Other lineage4.1.2.1 None
ERR867568 Other lineage2.2.1;lineage4 None
ERR4809333 Pre-XDR-TB lineage2.2.2 None
SRR1140574 MDR-TB lineage4.3.3;lineage4.8 None
SRR6046839 Other lineage4.9 None
SRR1062919 HR-TB lineage2.2.1 None
SRR1735596 RR-TB lineage4.9 None
ERR4769554 RR-TB lineage4.9 None
SRR11342669 Other lineage4.8 None
SRR6045664 Other lineage4.2.1 None
SRR3675552 Other lineage4.9 None
SRR6046117 Other lineage4.9 None
SRR7070320 Other lineage4.8 None
SRR3675495 Other lineage2.1;lineage4.9 None
ERR867575 Other lineage4.9 None
SRR7069946 Other lineage4.8 None
SRR16156832 RR-TB lineage2.2;lineage4 None
SRR19304115 Other lineage4.1.2.1 None
ERR10796620 Other lineage4.1.1.1 None
SRR6045267 RR-TB lineage4.8 None
ERR108125 RR-TB lineage4.9 None
ERR867574 Other lineage4.9 None
ERR987707 MDR-TB lineage4.7 None
ERR4769508 RR-TB lineage4.9 None
SRR11342691 MDR-TB lineage2.2.1 None
DRR184982 Other lineage2.2.1 None
SRR1062880 MDR-TB lineage4.6.1.2 None
ERR3324368 RR-TB lineage1.1.2 None
SRR18003044 MDR-TB lineage2.2.1 None
SRR1173515 Sensitive lineage4.9 None
SRR3675389 Other lineage4.9 None
SRR5818386 Other lineage4.9 None
ERR867554 Other lineage4.3.4.1 None
SRR7070293 Other lineage4.8 None
SRR6045516 Other lineage3.1.1 None
ERR2027209 MDR-TB lineage1.2.1.1 None
ERR3468613 Other La1.8.1 None
ERR4816548 HR-TB lineage4.5 None
ERR4811101 Other lineage4.4.2 None
SRR6046534 Other lineage1.1.2 None
SRR3675582 Other lineage4.9 None
SRR6046484 Other lineage1.2.2.2 None
SRR10315567 Other lineage2.2.1 None
SRR1049581 MDR-TB lineage4.6.1.2 None
SRR7070329 Other lineage3 None
ERR9896153 RR-TB lineage4.4.1.1 None
SRR10315464 MDR-TB lineage4.4.1.1 None
SRR10315556 Sensitive lineage2.2.1 None
SRR11342636 MDR-TB lineage4.3.3;lineage4.9 None
SRR6046802 Other lineage4.9 None
SRR11342653 MDR-TB lineage2.2.1 None
SRR11342648 MDR-TB lineage4.1.1.3 None
SRR11342658 RR-TB lineage4.1.2 None
SRR11342688 Other lineage4.2.2.2 None
SRR12062493 Pre-XDR-TB lineage4.4.2 None
SRR12062542 Pre-XDR-TB lineage2.2.1 None
SRR11972425 Pre-XDR-TB lineage2.2.1 None
SRR6045496 Other lineage6.1.3 None
SRR6046359 Other lineage4.7 None
ERR867538 Other lineage4.2.2.2 None
ERR867523 Pre-XDR-TB lineage2.2.1 None
SRR15508556 Other lineage4.3.4.1 None
ERR171142 Other lineage3.1.1;lineage4.9 None
SRR15316595 RR-TB lineage4.4.2 None
SRR11342646 HR-TB lineage3 None
SRR18002875 MDR-TB lineage2.2.2;lineage4 None
ERR867524 Pre-XDR-TB lineage4.2.1 None
ERR4596944 MDR-TB lineage3.1.1 None
ERR9117788 Other lineage3 None
SRR18002956 Other lineage2.2.1 None
SRR18002963 Other lineage2.2.1 None
SRR18003023 Other lineage2.2.1 None
SRR18003027 Other lineage2.2.1 None
SRR18003032 Other lineage2.2.1 None
SRR18003046 MDR-TB lineage2.2.1 None
SRR11972417 MDR-TB lineage2.2.1 None
SRR17567917 RR-TB lineage4.4.1.1 None
SRR16627752 RR-TB lineage4.4 None
SRR18002974 Other lineage2.2.1 None
SRR18002981 Other lineage2.2.1 None
SRR18002984 MDR-TB lineage2.2.2 None
SRR18003007 MDR-TB lineage4.5 None
SRR18003045 Other lineage2.2.1 None
SRR18003038 Other lineage2.2.1 None
SRR6045986 Other lineage3 None
SRR18002930 MDR-TB lineage2.2.1 None
SRR18002933 Other lineage2.2.1 None
SRR18002935 Pre-XDR-TB lineage2.2.1 None
SRR18002994 MDR-TB lineage4.2.2 None
ERR4821616 Other lineage1.1.3.1 None
ERR3468488 Other La1.8.1 None
SRR5007204 Other lineage4.1.2.1 None
SRR6046250 Other lineage4.9 None
SRR6046177 Other lineage3.1.2 None
SRR6046246 Other lineage3 None
SRR11342638 MDR-TB lineage4.4.1.1.1 None
SRR7755649 MDR-TB lineage4.2.1 None
SRR7755655 Other lineage4.1.2.1 None
SRR9971114 Other lineage2.2.1 None
SRR1180446 Other lineage4.9 None
SRR7755657 Other lineage4.8 None
SRR9971113 Other lineage2.2.1 None
SRR1173740 Other lineage3;lineage4 None
SRR6045944 Other lineage4.1.2.1 None
SRR6046020 Other lineage3 None
SRR7645901 MDR-TB lineage2.2.1 None
SRR6785281 Other lineage4.2.1.1 None
SRR9971046 MDR-TB lineage4.8 None
SRR9971122 MDR-TB lineage4.8 None
ERR10796578 Other lineage2.2.1 None
SRR9971112 Other lineage2.2.1 None
SRR9970980 Other lineage4.1.2 None
SRR16156697 RR-TB lineage2.2.1 None
SRR7068885 Other lineage3 None
ERR9786164 RR-TB lineage4.1.1.3 None
SRR1173185 Other lineage4.9 None
SRR5818408 Other lineage4.9 None
SRR6045384 Other lineage4.1.2.1 None
SRR1238558 Other lineage4.9 None
ERR10796598 Other lineage4.9 None
ERR867573 Other lineage4.9 None
ERR1034647 MDR-TB lineage4.1.1.3 None
SRR7070144 Other lineage4.8 None
SRR1735598 RR-TB lineage4.9 None
SRR7070134 Other lineage3.1.1 None
SRR1173281 Other lineage3 None
SRR7070195 Sensitive lineage3.1.2.1 None
SRR1173310 Other lineage3.1.1 None
ERR4769530 RR-TB lineage4.9 None
SRR7069189 HR-TB lineage4.1.2.1 None
ERR867570 RR-TB lineage4.9 None
ERR4817915 Other lineage4.9 None
SRR1049677 MDR-TB lineage4.3.3;lineage4.8 None
ERR10796560 Other lineage4.9 None
SRR1049675 HR-TB lineage2.2.1 None
ERR4808964 RR-TB lineage2.2.1 None
SRR7068875 Other lineage3.1.2.2 None
SRR5007161 RR-TB lineage4.1.1.3.1;lineage4.9 None
SRR5007165 Other lineage3 None
ERR4818646 Sensitive lineage4.1.2.1 None
SRR1181403 Other lineage4.9 None
SRR7069922 Other lineage2.2.1 None
SRR5818414 Other lineage4.9 None
SRR11342668 Pre-XDR-TB lineage4.8.1 None
ERR387051 Other lineage4.9 None
SRR11342684 HR-TB lineage4.4.1.1 None
ERR2600562 MDR-TB lineage2.2.1;lineage4.8 None
SRR1049676 MDR-TB lineage4.3.3;lineage4.8 None
ERR9992879 XDR-TB lineage4.3.3 None
SRR3675265 Other lineage4 None
ERR10796628 Other lineage4.3.3 None
ERR5162090 RR-TB lineage4.9 None
SRR7069800 Other lineage3.1.2.1 None
SRR7069518 Other lineage4.8 None
SRR7069835 Other lineage2.2.1 None
SRR7131161 Other lineage4.8 None
SRR1173385 Sensitive lineage4.9 None
SRR3618864 Pre-XDR-TB lineage2.2.1 None
ERR867569 Other lineage4.9 None
SRR7070369 Other lineage1.2.2.2 None
SRR3601585 Pre-XDR-TB lineage2.2.1 None
SRR7069013 Other lineage4.8 None
SRR7755688 Pre-XDR-TB lineage4.2.1 None
SRR7645927 Other lineage4.8 None
ERR10762275 MDR-TB lineage4.2.1 None
ERR10219876 Other lineage4.3.4.2 None
ERR867567 RR-TB lineage3 None
ERR126597 HR-TB lineage4.4.1.2 None
DRR188816 Sensitive lineage4.2.2 None
ERR4769436 Other La1.3 None
ERR2886463 Sensitive lineage2.2.1 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR16156188 Sensitive lineage4.9 None
ERR4821769 Other lineage4.1.2.1 None
ERR3806588 Other lineage6 None
ERR5987263 MDR-TB lineage2.2.1 None
SRR16157123 Other lineage4.9 None
ERR867541 MDR-TB lineage4.2.1 None
SRR1184308 Sensitive lineage4.9 None
ERR2027290 Other lineage3.1.2.1;lineage4.9 None
SAMN02380990 MDR-TB lineage4.6.1.2 None
SRR6789624 HR-TB lineage4.1.1.3 None
ERR867572 Other lineage4.9 None
ERR970449 RR-TB lineage4.1.1.3 None
ERR9992784 XDR-TB lineage2.2.2 None
SRR3675509 Other lineage4.9 None
SRR11342634 MDR-TB lineage4.8 None
SRR11342649 MDR-TB lineage4.3.3 None
SRR11342651 MDR-TB lineage4.1.1.1 None
SRR11342696 MDR-TB lineage4.4.1.1.1 None
SRR11342647 MDR-TB lineage4.1.1.3 None
SRR11342662 MDR-TB lineage4.8.1 None
ERR3014599 Pre-XDR-TB lineage4.1.2.1 tn
SRR11342686 MDR-TB lineage4.8 None
SRR11349147 RR-TB lineage4.3.2.1 None
ERR867540 MDR-TB lineage2.2.1 None
SRR5818464 Other lineage4.9 None
ERR867521 MDR-TB lineage2.2.1 None
SRR14801325 Pre-XDR-TB lineage4.2.1 None
SRR1196545 Sensitive lineage4.9 None
SRR13888750 Other La2 None
SRR5818397 Other lineage4.9 None
SRR5818448 Other lineage4.9 None
SRR1062920 MDR-TB lineage4.3.3;lineage4.8 None
SRR11342643 MDR-TB lineage4.1.1.1 None
SRR11342642 MDR-TB lineage4.1.1.1 None
SRR11349211 Pre-XDR-TB lineage4.3.3 None
ERR867526 MDR-TB lineage2.2.1 None
SRR1792011 Other La1.8.1 None
SRR18002881 Pre-XDR-TB lineage2.2.1 None
SRR18002891 MDR-TB lineage2.2.1 None
SRR18002967 HR-TB lineage2.2.1 None
SRR18002964 Other lineage2.2.1 None
SRR18911231 Sensitive lineage4.1.1.3 None
SRR21469201 Other La1.7.1 None
SRR18002887 MDR-TB lineage2.2.1.1 None
SRR18002903 Pre-XDR-TB lineage2.2.1 None
SRR6045321 Other lineage1.1.3.1 None
SRR18003024 RR-TB lineage2.2.1 None
SRR18003009 MDR-TB lineage2.2.1 None
SRR6045621 Other lineage4.1.1.3 None
SRR6046616 Other lineage4.3.1.1 None
SRR15315797 RR-TB lineage2.2.1;lineage4 None
SRR22048536 Other lineage4.3.3 None
SRR1792025 Other La1.8.1 None
SRR18002908 Other lineage2.2.1 None
SRR18002945 Other lineage2.2.1 None
SRR18002980 Other lineage2.2.1 None
SRR18003004 Pre-XDR-TB lineage2.2.2 None
SRR18003013 Pre-XDR-TB lineage4.4.2 None
SRR19303907 Other lineage4.8 None
SRR9971372 MDR-TB lineage4.1.1.1 None
SRR9971333 MDR-TB lineage4.1.1.3 None
SRR7645899 Other lineage2.2.1 None
SRR6982239 Sensitive lineage4.1.1.3 None
SRR4033549 Other lineage2.2.2 None
SRR1184329 Other lineage4.9 None
ERR3797065 RR-TB lineage4.9 None
SRR3675527 Other lineage4.9 None
ERR1023502 MDR-TB lineage2;lineage4 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
SRR7070157 Other lineage4.1.1.3.1 None
SRR1175491 MDR-TB lineage4.3.4.1 None
SRR3675539 HR-TB lineage4.9;lineage7 None
SRR1140724 Other lineage2.2.1 None
SRR6044952 Other lineage4.9 None
SRR6044838 Other lineage4.9 None
SRR6045002 RR-TB lineage4.9 None
SRR6045909 Other lineage4.8.1 None
SRR12708406 HR-TB lineage2.2.1;lineage4.9 None
SRR7131061 Other lineage2.2.1 None
SRR7646018 MDR-TB lineage4.2.1 None
ERR867544 Other lineage4.9 None