EBG00000313339 - n.2344T>C


Drug resistance types
22 Sensitive 39 RR-TB 20 HR-TB 74 MDR-TB 34 Pre-XDR-TB 2 XDR-TB 179 Other
lineage Counts
lineage Count
lineage2.2.1 87
lineage4.1.2.1 13
lineage1.1.3.1 2
lineage4.3.3 8
lineage3.1.2.2 1
lineage4.4.1.1 7
lineage4.9 60
lineage4.2.1.1;lineage4.3.3 1
lineage4.2.1 11
lineage5.1.1 1
lineage4.8 21
lineage4.3.4.1 6
lineage4.2.1.1 2
lineage4.3.4.2.1 2
lineage3;lineage4 2
lineage4.6.1.2 4
lineage3.1.1 7
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.5 2
lineage3.1.2.1;lineage4.9 1
lineage1.2.2.2 4
lineage4.1.1.3 13
lineage6.1.3 2
lineage3.1.2 1
lineage4.1.1.1 6
lineage4.6.5 1
lineage4.4.1.1.1 3
La1.7.X-unk4 1
lineage2.2.2 9
lineage3 18
lineage4.1.3 1
lineage4.3.4.2 2
lineage4.4.2 4
lineage3.1.2.1 2
lineage4.8.1 4
lineage3;lineage4.2.2.2 1
lineage4.3.3;lineage4.8 4
lineage4.7 2
lineage4.1.1.3.1;lineage4.9 1
lineage1.2.1.1 1
lineage2.2.1;lineage4 1
lineage2.2.1;lineage4.8 1
La1.7.1 2
lineage2.1;lineage4.9 1
lineage4.2.2.2 4
lineage4.3 1
lineage2.2;lineage4 1
lineage4.4 2
La1.8.1 8
lineage4.3.2 2
lineage4.3.2.1 2
lineage3.1.1;lineage4.9 1
lineage4.4.1.2 1
lineage4.2.2 2
lineage4.1.1.2 1
lineage2;lineage4 1
La1.7;M.canetti;lineage4.9 1
lineage4.6.2.2 2
lineage1.1.2;lineage6.2.3 1
lineage4.1.1.3.1 2
lineage1.2.1.2 1
lineage2.2.1.1 2
lineage4.9;lineage7 1
lineage4.1.2 2
lineage4 1
lineage4.3.1.1 1
lineage3.1.3 1
La2 1
La1.3 1
lineage1.1.1.1 1
lineage4.1.2;lineage4.9 1
lineage2.2.1;lineage4.9 1
spoligotype Counts
spoligotype Count
None 370
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR7068912 Pre-XDR-TB lineage2.2.1 None
SRR5007204 Other lineage4.1.2.1 None
SRR6045321 Other lineage1.1.3.1 None
ERR4808964 RR-TB lineage2.2.1 None
SRR22048536 Other lineage4.3.3 None
SRR7068875 Other lineage3.1.2.2 None
ERR4818646 Sensitive lineage4.1.2.1 None
SRR10315464 MDR-TB lineage4.4.1.1 None
SRR1181403 Other lineage4.9 None
SRR7069922 Other lineage2.2.1 None
SRR15315797 RR-TB lineage2.2.1 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
SRR18003015 MDR-TB lineage2.2.1 None
SRR7069347 Other lineage4.1.2.1 None
SRR7645977 MDR-TB lineage4.2.1 None
SRR6046839 Other lineage4.9 None
SRR1735596 RR-TB lineage4.9 None
ERR751345 Other lineage5.1.1 None
SRR6045664 Other lineage4.2.1 None
SRR7131123 Other lineage4.8 None
SRR7645899 Other lineage2.2.1 None
SRR7070320 Other lineage4.8 None
SRR7131161 Other lineage4.8 None
SRR3618864 Pre-XDR-TB lineage2.2.1 None
SRR7645973 Other lineage4.3.4.1 None
ERR4872322 Pre-XDR-TB lineage2.2.1 None
ERR867526 MDR-TB lineage2.2.1 None
SRR7070521 Other lineage4.2.1.1 None
SRR7755688 Pre-XDR-TB lineage4.2.1 None
ERR4769508 RR-TB lineage4.9 None
SRR7645927 Other lineage4.8 None
SRR5818647 Other lineage4.3.4.2.1 None
SRR3675230 Other lineage3;lineage4 None
SRR1062880 MDR-TB lineage4.6.1.2 None
ERR867554 Other lineage4.3.4.1 None
SRR6045516 Other lineage3.1.1 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR19304104 Other lineage4.8 None
ERR4816548 HR-TB lineage4.5 None
ERR4821811 Sensitive lineage4.9 None
ERR4821769 Other lineage4.1.2.1 None
SAMN02380990 MDR-TB lineage4.6.1.2 None
SRR10315567 HR-TB lineage2.2.1 None
ERR2027290 Other lineage3.1.2.1;lineage4.9 None
SRR6046484 Other lineage1.2.2.2 None
SRR6789624 HR-TB lineage4.1.1.3 None
ERR867572 Other lineage4.9 None
SRR18003046 MDR-TB lineage2.2.1 None
SRR3675509 Other lineage4.9 None
ERR3014599 Pre-XDR-TB lineage4.1.2.1 tn
SRR6045496 Other lineage6.1.3 None
SRR6046177 Other lineage3.1.2 None
SRR11342643 MDR-TB lineage4.1.1.1 None
SRR18002881 Pre-XDR-TB lineage2.2.1 None
SRR18002909 MDR-TB lineage2.2.1 None
SRR6046848 Other lineage4.6.5 None
ERR2446154 Sensitive lineage4.4.1.1 nl
ERR3797062 RR-TB lineage4.9 None
ERR1023509 Other lineage4.9 None
SRR11342696 MDR-TB lineage4.4.1.1.1 None
ERR3445487 Other La1.7.X-unk4 None
SRR1180446 Other lineage4.9 None
SRR3619841 Pre-XDR-TB lineage2.2.1 None
SRR11342644 MDR-TB lineage4.4.1.1.1 None
SRR6982324 Sensitive lineage3.1.1 None
SRR16156697 RR-TB lineage2.2.1 None
SRR5818398 Other lineage4.9 None
SRR18003032 Other lineage2.2.1 None
ERR3797065 RR-TB lineage4.9 None
SRR1173185 Other lineage4.9 None
SRR9971112 Other lineage2.2.1 None
SRR5818408 Other lineage4.9 None
SRR6045384 Other lineage4.1.2.1 None
ERR10796598 Other lineage4.9 None
SRR1196478 Other lineage4.9 None
SRR6785281 Other lineage4.2.1.1 None
SRR7131195 Other lineage2.2.1 None
ERR1034647 MDR-TB lineage4.1.1.3 None
ERR9992784 XDR-TB lineage2.2.2 None
SRR11342664 MDR-TB lineage2.2.2 None
SRR18003023 Other lineage2.2.1 None
SRR7070134 Other lineage3.1.1 None
ERR4819175 Other lineage4.1.1.3 gb
ERR867521 MDR-TB lineage2.2.1 None
SRR1173281 Other lineage3 None
SRR18003024 RR-TB lineage2.2.1 None
SRR11342671 RR-TB lineage4.1.3 None
SRR11342673 RR-TB lineage4.3.4.2 None
SRR17567917 RR-TB lineage4.4.1.1 None
SRR18003002 MDR-TB lineage2.2.1 None
SRR9971372 MDR-TB lineage4.1.1.1 None
ERR4811101 Other lineage4.4.2 None
SRR7070195 Sensitive lineage3.1.2.1 None
SRR6044838 Other lineage4.9 None
SRR6045002 RR-TB lineage4.9 None
SRR6045909 Other lineage4.8.1 None
SRR7131061 Other lineage2.2.1 None
ERR867544 Other lineage4.9 None
ERR4817915 Other lineage4.9 None
SRR12062493 Pre-XDR-TB lineage4.4.2 None
SRR5818694 Other lineage3;lineage4.2.2.2 None
SRR18002930 MDR-TB lineage2.2.1 None
ERR10762275 MDR-TB lineage4.2.1 None
SRR1049677 MDR-TB lineage4.3.3;lineage4.8 None
SRR11342662 MDR-TB lineage4.8.1 None
SRR1175472 RR-TB lineage4.3.4.1 None
SRR14782539 MDR-TB lineage4.2.1 None
SRR7645928 Other lineage4.7 None
SRR18002874 MDR-TB lineage2.2.1 None
SRR7645906 Other lineage2.2.1 None
SRR7755657 Other lineage4.8 None
SRR1049675 HR-TB lineage2.2.1 None
SRR9971114 Other lineage2.2.1 None
SRR5007161 RR-TB lineage4.1.1.3.1;lineage4.9 None
SRR5007165 Other lineage3 None
ERR2027209 MDR-TB lineage1.2.1.1 None
SRR18003004 Pre-XDR-TB lineage2.2.2 None
SRR18003009 MDR-TB lineage2.2.1 None
ERR867527 Pre-XDR-TB lineage2.2.1 None
SRR7070223 HR-TB lineage3 None
SRR18002891 MDR-TB lineage2.2.1 None
SRR10315558 Sensitive lineage2.2.1 None
ERR387051 Other lineage4.9 None
SRR11342684 HR-TB lineage4.4.1.1 None
ERR867568 Other lineage2.2.1;lineage4 None
ERR2600562 MDR-TB lineage2.2.1;lineage4.8 None
SRR11342649 MDR-TB lineage4.3.3 None
SRR18003013 Pre-XDR-TB lineage4.4.2 None
SRR1140574 MDR-TB lineage4.3.3;lineage4.8 None
SRR18002941 RR-TB lineage2.2.1 None
SRR6046815 Other lineage3 None
SRR18003042 Other lineage2.2.1 None
ERR867524 Pre-XDR-TB lineage4.2.1 None
SRR3619764 Pre-XDR-TB lineage2.2.1 None
SRR19303820 RR-TB lineage4.8 None
SRR21469200 Other La1.7.1 None
SRR1062919 HR-TB lineage2.2.1 None
ERR9117827 Other lineage1.2.2.2 None
ERR9119733 MDR-TB lineage2.2.1 None
SRR18002933 Other lineage2.2.1 None
ERR4769554 RR-TB lineage4.9 None
ERR10796628 Other lineage4.3.3 None
SRR11342669 Other lineage4.8 None
ERR5162090 RR-TB lineage4.9 None
SRR6045957 Other lineage4.9 None
SRR6824501 Pre-XDR-TB lineage2.2.1 None
SRR6046117 Other lineage4.9 None
ERR3806588 Other lineage6.1.3 None
SRR7069835 Other lineage2.2.1 None
SRR3675495 Other lineage2.1;lineage4.9 None
SRR1173385 Sensitive lineage4.9 None
SRR11342687 RR-TB lineage4.2.2.2 None
ERR867538 Other lineage4.2.2.2 None
ERR867575 Other lineage4.9 None
ERR867569 Other lineage4.9 None
SRR11342642 MDR-TB lineage4.1.1.1 None
ERR2027257 Other lineage4.1.2.1 None
SRR7069946 Other lineage4.8 None
SRR7070369 Other lineage1.2.2.2 None
ERR3275941 RR-TB lineage4.3 nl
SRR16156832 RR-TB lineage2.2;lineage4 None
SRR18002963 Other lineage2.2.1 None
ERR10796620 Other lineage4.1.1.1 None
ERR867574 Other lineage4.9 None
SRR7131147 Other lineage4.1.2.1 None
ERR867567 RR-TB lineage3 None
SRR18002976 Other lineage2.2.1 None
SRR11342691 MDR-TB lineage2.2.1 None
SRR16627752 RR-TB lineage4.4 None
SRR11342686 MDR-TB lineage4.8 None
SRR11972417 MDR-TB lineage2.2.1 None
SRR3675389 Other lineage4.9 None
SRR5818386 Other lineage4.9 None
ERR3468613 Other La1.8.1 None
SRR6982141 Other lineage4.3.3 None
ERR4972567 MDR-TB lineage4.3.2 None
SRR3675582 Other lineage4.9 None
ERR736820 MDR-TB lineage1.2.2.2 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR11342688 Other lineage4.2.2.2 None
SRR6046246 Other lineage3 None
SRR7070329 Other lineage3 None
ERR9896153 RR-TB lineage4.4.1.1 None
SRR11342636 MDR-TB lineage4.3.3 None
ERR867523 Pre-XDR-TB lineage2.2.1 None
SRR12062542 Pre-XDR-TB lineage2.2.1 None
SRR5818464 Other lineage4.9 None
SRR6046359 Other lineage4.7 None
ERR171142 Other lineage3.1.1;lineage4.9 None
ERR5987263 MDR-TB lineage2.2.1 None
SRR1792024 Other La1.8.1 None
ERR5311077 Other La1.8.1 None
SRR19303815 Other lineage4.8 None
ERR4821616 Other lineage1.1.3.1 None
SRR6046250 Other lineage4.9 None
ERR867522 Pre-XDR-TB lineage2.2.1 None
SRR11342638 MDR-TB lineage4.4.1.1.1 None
ERR126597 HR-TB lineage4.4.1.2 None
ERR2886463 Sensitive lineage2.2.1 None
SRR11349201 MDR-TB lineage4.1.1.3 None
ERR10796578 Other lineage2.2.1 None
SRR4033549 Other lineage2.2.2 None
SRR18002994 MDR-TB lineage4.2.2 None
DRR184903 Sensitive lineage2.2.2 None
SRR18002980 Other lineage2.2.1 None
SRR11342647 MDR-TB lineage4.1.1.3 None
SRR7068885 Other lineage3 None
ERR8975044 Other lineage4.1.1.2 None
SRR8758877 MDR-TB lineage4.1.1.1 None
DRR188816 Sensitive lineage4.2.2 None
SRR1792022 Other La1.8.1 None
ERR9992879 XDR-TB lineage4.3.3 None
ERR867571 Other lineage4.9 None
ERR1023502 MDR-TB lineage2;lineage4 None
SRR7645972 MDR-TB lineage4.2.1 None
SRR18002908 Other lineage2.2.1 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
SRR18002998 Pre-XDR-TB lineage2.2.2 None
SRR6045621 Other lineage4.1.1.3 None
ERR867525 Pre-XDR-TB lineage2.2.1 None
ERR867573 Other lineage4.9 None
ERR4821318 HR-TB lineage4.6.2.2 gb
ERR3324368 RR-TB lineage1.1.2;lineage6.2.3 None
SRR5818452 Other lineage4.9 None
SRR18002987 Other lineage2.2.1 None
SRR19303899 Other lineage3 None
SRR7070157 Other lineage4.1.1.3.1 None
SRR1735598 RR-TB lineage4.9 None
SRR9971046 MDR-TB lineage4.8 None
SRR9971122 MDR-TB lineage4.8 None
SRR11342646 HR-TB lineage3 None
SRR1175491 MDR-TB lineage4.3.4.1 None
SRR7131297 Other lineage1.2.1.2 None
SRR7755649 MDR-TB lineage4.2.1 None
SRR12062533 Pre-XDR-TB lineage2.2.1.1 None
SRR12634609 MDR-TB lineage3.1.1 None
SRR3675539 HR-TB lineage4.9;lineage7 None
SRR1140724 Other lineage2.2.1 None
SRR5818388 Other lineage4.9 None
SRR15508556 Other lineage4.3.4.1 None
SRR16156804 Sensitive lineage4.9 None
SRR11342648 MDR-TB lineage4.1.1.3 None
SRR11342693 MDR-TB lineage4.8.1 None
SRR1173310 Other lineage3.1.1 None
ERR4769530 RR-TB lineage4.9 None
SRR18002887 MDR-TB lineage2.2.1.1 None
SRR18002981 Other lineage2.2.1 None
SRR6046343 Other lineage2.2.1 None
SRR7069189 HR-TB lineage4.1.2.1 None
SRR6045986 Other lineage3 None
SRR18003030 Pre-XDR-TB lineage2.2.1 None
ERR323044 HR-TB lineage4.3.4.2.1 None
SRR5163959 Other lineage4.9 None
SRR18002947 MDR-TB lineage2.2.1 None
ERR10796560 Other lineage4.9 None
SRR5818414 Other lineage4.9 None
SRR11342658 RR-TB lineage4.1.2 None
SRR11342668 Pre-XDR-TB lineage4.8.1 None
SRR10315556 Sensitive lineage2.2.1 None
ERR10219876 Other lineage4.3.4.2 None
SRR1049676 MDR-TB lineage4.3.3;lineage4.8 None
SRR11342640 MDR-TB lineage4.3.3 None
SRR1792025 Other La1.8.1 None
SRR1180440 Other lineage4.9 None
ERR4809333 Pre-XDR-TB lineage2.2.2 None
SRR21727760 Other lineage2.2.1 None
SRR14801325 Pre-XDR-TB lineage4.2.1 None
SRR6045464 Other lineage4.1.1.3 None
SRR3675265 Other lineage4 None
SRR18002974 Other lineage2.2.1 None
SRR11349211 Pre-XDR-TB lineage4.3.3 None
DRR184982 Other lineage2.2.1 None
SRR7755655 Other lineage4.1.2.1 None
SRR15316595 RR-TB lineage4.4.2 None
SRR11972425 Pre-XDR-TB lineage2.2.1 None
SRR6046616 Other lineage4.3.1.1 None
SRR22175249 Pre-XDR-TB lineage2.2.1 None
SRR6982239 Sensitive lineage4.1.1.3 None
SRR9970980 HR-TB lineage4.1.2 None
SRR7069800 Other lineage3.1.2.1 None
SRR3675552 Other lineage4.9 None
SRR7069518 Other lineage4.8 None
SRR18003038 Other lineage2.2.1 None
SRR3601585 Pre-XDR-TB lineage2.2.1 None
SRR19304115 Other lineage4.1.2.1 None
SRR6045267 RR-TB lineage4.8 None
ERR108125 RR-TB lineage4.9 None
SRR7069013 Other lineage4.8 None
SRR6045613 Other lineage3.1.3 None
SRR7755645 Pre-XDR-TB lineage2.2.1 None
ERR4596904 MDR-TB lineage3.1.1 None
ERR4132460 MDR-TB lineage2.2.1 None
SRR18002984 MDR-TB lineage2.2.2 None
ERR2229198 Sensitive lineage4.8 None
SRR18002937 Other lineage2.2.1 None
SRR11342651 MDR-TB lineage4.1.1.1 None
ERR970449 RR-TB lineage4.1.1.3 None
SRR11342660 MDR-TB lineage2.2.1 None
SRR7070293 Other lineage4.8 None
SRR6046020 Other lineage3 None
SRR3675245 Other lineage4.1.2.1 None
SRR13888750 Other La2 None
SRR16156188 Sensitive lineage4.9 None
SRR7645901 MDR-TB lineage2.2.1 None
SRR1184308 Sensitive lineage4.9 None
SRR18002903 Pre-XDR-TB lineage2.2.1 None
ERR867540 MDR-TB lineage2.2.1 None
SRR18003047 MDR-TB lineage2.2.1 None
SRR11342653 MDR-TB lineage2.2.1 None
SRR18003007 MDR-TB lineage4.5 None
SRR18002967 HR-TB lineage2.2.1 None
SRR18003012 Pre-XDR-TB lineage2.2.1 None
ERR9117805 Other lineage4.3.2 None
ERR867541 MDR-TB lineage4.2.1 None
ERR4769436 Other La1.3 None
SRR6046376 Other lineage3 None
ERR9117788 Other lineage3 None
SRR7131145 Other lineage4.1.2.1 None
SRR5007193 RR-TB lineage4.1.1.3.1 None
SRR5818397 Other lineage4.9 None
SRR5818448 Other lineage4.9 None
SRR1062920 MDR-TB lineage4.3.3;lineage4.8 None
SRR11342698 RR-TB lineage4.4.1.1 None
ERR9117759 Other lineage3 None
ERR3468488 Other La1.8.1 None
DRR185000 Other lineage1.1.1.1 None
SRR18002935 Pre-XDR-TB lineage2.2.1 None
ERR4820484 Sensitive lineage4.8 None
SRR1173740 Other lineage3;lineage4 None
ERR3275615 Sensitive lineage4.4.1.1 nl
SRR18002875 MDR-TB lineage2.2.2 None
SRR18002964 Other lineage2.2.1 None
SRR1184329 Other lineage4.9 None
SRR18002999 Pre-XDR-TB lineage2.2.1 None
SRR11342676 HR-TB lineage4.6.2.2 None
ERR9786164 RR-TB lineage4.1.1.3 None
ERR502470 RR-TB lineage4.9 None
SRR3675527 Other lineage4.9 None
SRR6982246 Sensitive lineage4.1.2;lineage4.9 None
SRR1238558 Other lineage4.9 None
SRR21469202 Other La1.7.1 None
SRR1792012 Other La1.8.1 None
SRR1792011 Other La1.8.1 None
SRR6046442 Other lineage3 None
SRR7070144 Other lineage4.8 None
SRR1049582 MDR-TB lineage4.6.1.2 None
SRR7645971 Other lineage2.2.1 None
ERR3275996 HR-TB lineage4.3.4.1 nl
SRR9971333 MDR-TB lineage4.1.1.3 None
ERR5917985 MDR-TB lineage2.2.1 None
ERR5979407 Other lineage3 None
SRR5341365 Pre-XDR-TB lineage3 None
ERR4821718 Sensitive lineage4.2.2.2 gb
SRR1181256 Other lineage4.9 None
SRR18002956 Other lineage2.2.1 None
SRR18003045 Other lineage2.2.1 None
SRR19303907 Other lineage4.8 None
ERR2513405 Other lineage2.2.1 None
SRR1175474 Other lineage4.9 None
SRR6044952 Other lineage4.9 None
SRR12708406 HR-TB lineage2.2.1;lineage4.9 None
SRR18911231 Sensitive lineage4.1.1.3 None
SRR6044787 Sensitive lineage4.4 None
SRR7646018 MDR-TB lineage4.2.1 None
ERR867570 RR-TB lineage4.9 None
SRR5818459 Other lineage4.9 None
ERR4596944 MDR-TB lineage3.1.1 None
SRR1049674 HR-TB lineage2.2.1 None
SRR11349147 RR-TB lineage4.3.2.1 None
SRR1140712 MDR-TB lineage4.6.1.2 None