TB-Profiler result

Run: SRR6982239
Summary

Run ID: SRR6982239

Sample name:

Date: 04-04-2023 18:31:33

Number of reads: 763917

Percentage reads mapped: 57.55

Strain: lineage4.1.1.3

Drug-resistance: HR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.1 Euro-American T;X;H None 1.0
lineage4.1.1 Euro-American (X-type) X1;X2;X3 None 1.0
lineage4.1.1.3 Euro-American (X-type) X1;X3 RD193 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
katG 2155693 p.Ser140Asn missense_variant 0.14 isoniazid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
rpoB 761133 c.1327T>C synonymous_variant 0.11
rpoB 761138 c.1332C>G synonymous_variant 0.11
rpoB 761147 c.1341C>T synonymous_variant 0.12
rpoB 761150 c.1344A>T synonymous_variant 0.12
rpoB 761154 p.Ser450Asn missense_variant 0.12
rpoB 761162 c.1356G>C synonymous_variant 0.11
rpoB 761165 c.1359G>C synonymous_variant 0.11
rpoB 761168 c.1362C>G synonymous_variant 0.12
rpoB 761171 c.1365C>T synonymous_variant 0.12
rpoB 761177 c.1371G>C synonymous_variant 0.11
rpoB 761180 c.1374A>C synonymous_variant 0.11
rpoB 761189 c.1383T>G synonymous_variant 0.12
rpoB 761195 c.1389G>C synonymous_variant 0.11
rpoB 761198 c.1392G>C synonymous_variant 0.11
rpoB 762209 c.2403C>G synonymous_variant 0.15
rpoB 762212 c.2406G>C synonymous_variant 0.11
rpoB 762218 c.2412T>C synonymous_variant 0.11
rpoB 762233 c.2427G>C synonymous_variant 0.11
rpoB 762236 c.2430G>C synonymous_variant 0.11
rpoB 762245 c.2439G>C synonymous_variant 0.11
rpoB 762251 c.2445G>C synonymous_variant 0.11
rpoB 762254 c.2448T>C synonymous_variant 0.12
rpoB 762257 c.2451C>G synonymous_variant 0.11
rpoB 762266 c.2460T>C synonymous_variant 0.11
rpoC 762866 c.-504C>G upstream_gene_variant 0.12
rpoB 762879 p.Met1025Leu missense_variant 0.17
rpoC 762887 c.-483G>C upstream_gene_variant 0.2
rpoC 762899 c.-471G>C upstream_gene_variant 0.23
rpoB 762909 p.Ile1035Leu missense_variant 0.22
rpoC 762920 c.-450C>G upstream_gene_variant 0.22
rpoC 762923 c.-447C>G upstream_gene_variant 0.21
rpoC 762929 c.-441G>C upstream_gene_variant 0.21
rpoC 762962 c.-408C>T upstream_gene_variant 0.22
rpoC 762971 c.-399G>C upstream_gene_variant 0.23
rpoC 762980 c.-390T>C upstream_gene_variant 0.24
rpoC 762989 c.-381G>C upstream_gene_variant 0.22
rpoC 762995 c.-375G>T upstream_gene_variant 0.21
rpoB 763005 p.Cys1067Val missense_variant 0.21
rpoC 763013 c.-357C>G upstream_gene_variant 0.26
rpoB 763014 p.Met1070Leu missense_variant 0.27
rpoB 763017 p.Gln1071Glu missense_variant 0.27
rpoC 763022 c.-348C>G upstream_gene_variant 0.29
rpoC 763028 c.-342T>C upstream_gene_variant 0.24
rpoC 763031 c.-339T>C upstream_gene_variant 0.24
rpoC 763034 c.-336C>G upstream_gene_variant 0.2
rpoB 763038 p.Thr1078Ala missense_variant 0.22
rpoC 763043 c.-327G>C upstream_gene_variant 0.26
rpoC 763053 c.-317T>C upstream_gene_variant 0.28
rpoC 763070 c.-300T>C upstream_gene_variant 0.21
rpoC 763088 c.-282C>G upstream_gene_variant 0.2
rpoC 763094 c.-276G>C upstream_gene_variant 0.18
rpoC 763103 c.-267G>C upstream_gene_variant 0.19
rpoC 763115 c.-255T>C upstream_gene_variant 0.19
rpoC 763127 c.-243G>T upstream_gene_variant 0.13
rpoC 763133 c.-237G>C upstream_gene_variant 0.13
rpoC 763462 c.93G>C synonymous_variant 0.16
rpoC 763468 c.99G>C synonymous_variant 0.19
rpoC 763483 c.114G>C synonymous_variant 0.18
rpoC 763486 c.117T>C synonymous_variant 0.16
rpoC 763492 c.123G>C synonymous_variant 0.18
rpoC 763504 c.135C>A synonymous_variant 0.18
rpoC 763507 c.138G>C synonymous_variant 0.21
rpoC 763528 c.159G>T synonymous_variant 0.22
rpoC 763534 c.165T>C synonymous_variant 0.27
rpoC 763537 c.168C>G synonymous_variant 0.27
rpoC 763546 c.177A>G synonymous_variant 0.22
rpoC 763570 c.201G>C synonymous_variant 0.21
rpoC 763573 c.204G>C synonymous_variant 0.21
rpoC 763615 c.246G>C synonymous_variant 0.17
rpoC 763618 c.249C>T synonymous_variant 0.19
rpoC 763633 c.264T>C synonymous_variant 0.19
rpoC 763660 c.291T>G synonymous_variant 0.25
rpoC 763666 c.297G>T synonymous_variant 0.23
rpoC 763696 c.327T>C synonymous_variant 0.15
rpoC 763699 c.330G>C synonymous_variant 0.14
rpoC 763702 c.333C>G synonymous_variant 0.14
rpoC 763708 c.339G>C synonymous_variant 0.14
rpoC 763714 c.345G>C synonymous_variant 0.13
rpoC 763717 c.348T>C synonymous_variant 0.14
rpoC 763720 c.351G>C synonymous_variant 0.13
rpoC 763723 c.354G>C synonymous_variant 0.14
rpoC 763732 c.363C>G synonymous_variant 0.15
rpoC 763744 c.375G>C synonymous_variant 0.12
rpoC 764485 c.1116G>C synonymous_variant 0.11
rpoC 764498 p.Ser377Ala missense_variant 0.11
rpoC 764512 c.1143G>C synonymous_variant 0.13
rpoC 764521 c.1152T>C synonymous_variant 0.16
rpoC 764536 c.1167G>C synonymous_variant 0.16
rpoC 764539 c.1170C>G synonymous_variant 0.16
rpoC 764545 c.1176C>G synonymous_variant 0.16
rpoC 764548 c.1179G>C synonymous_variant 0.16
rpoC 764551 c.1182G>C synonymous_variant 0.16
rpoC 764560 c.1191T>C synonymous_variant 0.18
rpoC 764566 c.1197C>G synonymous_variant 0.2
rpoC 764575 c.1206T>G synonymous_variant 0.22
rpoC 764581 c.1212T>C synonymous_variant 0.22
rpoC 764582 p.Leu405Met missense_variant 0.21
rpoC 764605 c.1236G>C synonymous_variant 0.26
rpoC 764611 c.1242G>C synonymous_variant 0.25
rpoC 764632 c.1263T>C synonymous_variant 0.22
rpoC 764635 c.1266C>G synonymous_variant 0.22
rpoC 764644 c.1275G>C synonymous_variant 0.2
rpoC 764646 p.Gly426Ala missense_variant 0.21
rpoC 764650 c.1281G>T synonymous_variant 0.21
rpoC 764653 c.1284G>C synonymous_variant 0.21
rpoC 764656 c.1287C>G synonymous_variant 0.22
rpoC 764662 c.1293G>C synonymous_variant 0.24
rpoC 764668 c.1299C>T synonymous_variant 0.25
rpoC 764701 c.1332C>G synonymous_variant 0.25
rpoC 764705 p.Leu446Ala missense_variant 0.23
rpoC 764722 c.1353G>C synonymous_variant 0.23
rpoC 764746 c.1377G>C synonymous_variant 0.21
rpoC 764752 c.1383G>C synonymous_variant 0.22
rpoC 764758 c.1389C>G synonymous_variant 0.22
rpoC 764764 c.1395T>C synonymous_variant 0.2
rpoC 764872 c.1503A>G synonymous_variant 0.1
rpoC 765150 p.Gly594Glu missense_variant 1.0
rpoC 766312 c.2943T>C synonymous_variant 0.11
rpoC 766316 p.Met983Leu missense_variant 0.11
rpoC 766351 c.2982C>G synonymous_variant 0.11
rpoC 766361 p.Val998Ile missense_variant 0.11
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776107 p.Leu792Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.33
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.35
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.35
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.36
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.38
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.49
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.49
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.51
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.59
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.53
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.41
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.35
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.33
rrs 1472293 n.448C>A non_coding_transcript_exon_variant 0.33
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.35
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.31
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.31
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.31
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.33
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.4
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.44
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.46
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.45
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.42
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.32
rrs 1472425 n.580T>C non_coding_transcript_exon_variant 0.29
rrs 1472431 n.586G>A non_coding_transcript_exon_variant 0.28
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.28
rrs 1472437 n.592T>G non_coding_transcript_exon_variant 0.28
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.28
rrs 1472446 n.601T>G non_coding_transcript_exon_variant 0.27
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.28
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 0.28
rrs 1472451 n.606C>G non_coding_transcript_exon_variant 0.28
rrs 1472460 n.615T>C non_coding_transcript_exon_variant 0.25
rrs 1472461 n.616G>C non_coding_transcript_exon_variant 0.25
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 0.27
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.27
rrs 1472466 n.621C>T non_coding_transcript_exon_variant 0.27
rrs 1472467 n.622G>C non_coding_transcript_exon_variant 0.27
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.26
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 0.3
rrs 1472486 n.641A>G non_coding_transcript_exon_variant 0.33
rrs 1472494 n.649A>T non_coding_transcript_exon_variant 0.35
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 0.38
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.44
rrs 1472507 n.662C>T non_coding_transcript_exon_variant 0.48
rrs 1472508 n.663T>C non_coding_transcript_exon_variant 0.49
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.55
rrs 1472571 n.726G>A non_coding_transcript_exon_variant 0.68
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.68
rrs 1472583 n.738T>A non_coding_transcript_exon_variant 0.68
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.66
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.61
rrs 1472673 n.828T>C non_coding_transcript_exon_variant 0.57
rrs 1472674 n.829T>A non_coding_transcript_exon_variant 0.58
rrs 1472675 n.830T>A non_coding_transcript_exon_variant 0.58
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.58
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.61
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.61
rrs 1472793 n.948A>C non_coding_transcript_exon_variant 0.52
rrs 1472803 n.958T>C non_coding_transcript_exon_variant 0.51
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.46
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.44
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.45
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.42
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 0.38
rrs 1472844 n.999C>A non_coding_transcript_exon_variant 0.39
rrs 1472845 n.1000G>A non_coding_transcript_exon_variant 0.39
rrs 1472848 n.1003T>G non_coding_transcript_exon_variant 0.39
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 0.39
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 0.42
rrs 1472859 n.1014G>T non_coding_transcript_exon_variant 0.42
rrs 1472862 n.1017T>C non_coding_transcript_exon_variant 0.41
rrs 1472863 n.1018T>C non_coding_transcript_exon_variant 0.4
rrs 1472873 n.1028C>T non_coding_transcript_exon_variant 0.44
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.46
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.56
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.64
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.59
rrs 1472968 n.1125_1128delCGTA non_coding_transcript_exon_variant 0.58
rrs 1472974 n.1129_1130insGCCCCTTCGGGGG non_coding_transcript_exon_variant 0.42
rrs 1472977 n.1132G>T non_coding_transcript_exon_variant 0.54
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.57
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.57
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.57
rrs 1472996 n.1151T>C non_coding_transcript_exon_variant 0.6
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.67
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.74
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.74
rrs 1473062 n.1217T>G non_coding_transcript_exon_variant 0.79
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 0.81
rrs 1473089 n.1244A>T non_coding_transcript_exon_variant 0.79
rrs 1473091 n.1246G>A non_coding_transcript_exon_variant 0.8
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.81
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.82
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.79
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.79
rrs 1473120 n.1275C>T non_coding_transcript_exon_variant 0.78
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.78
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.77
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.75
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.76
rrs 1473201 n.1356A>T non_coding_transcript_exon_variant 0.69
rrs 1473202 n.1357C>T non_coding_transcript_exon_variant 0.69
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.61
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.59
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 0.59
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.54
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.52
rrl 1473658 n.1T>C non_coding_transcript_exon_variant 0.17
rrl 1473696 n.39T>C non_coding_transcript_exon_variant 0.14
rrl 1473698 n.41G>A non_coding_transcript_exon_variant 0.14
rrl 1473699 n.42A>G non_coding_transcript_exon_variant 0.14
rrl 1473702 n.45G>A non_coding_transcript_exon_variant 0.14
rrl 1473724 n.67T>C non_coding_transcript_exon_variant 0.14
rrl 1473725 n.68G>A non_coding_transcript_exon_variant 0.14
rrl 1473731 n.74T>G non_coding_transcript_exon_variant 0.14
rrl 1474179 n.522C>T non_coding_transcript_exon_variant 0.11
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.12
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.12
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.11
rrl 1474200 n.545delT non_coding_transcript_exon_variant 0.26
rrl 1474232 n.575C>G non_coding_transcript_exon_variant 0.28
rrl 1474239 n.582G>C non_coding_transcript_exon_variant 0.28
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.28
rrl 1474483 n.826C>G non_coding_transcript_exon_variant 0.11
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.12
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.13
rrl 1474497 n.840G>A non_coding_transcript_exon_variant 0.12
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.12
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.12
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.12
rrl 1474528 n.871T>A non_coding_transcript_exon_variant 0.12
rrl 1474529 n.872A>G non_coding_transcript_exon_variant 0.12
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.13
rrl 1474540 n.883T>C non_coding_transcript_exon_variant 0.14
rrl 1474541 n.884G>T non_coding_transcript_exon_variant 0.14
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.16
rrl 1474551 n.894G>C non_coding_transcript_exon_variant 0.2
rrl 1474558 n.901G>T non_coding_transcript_exon_variant 0.29
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.43
rrl 1474628 n.971C>T non_coding_transcript_exon_variant 0.42
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.4
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.4
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.4
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.4
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.4
rrl 1474651 n.995delT non_coding_transcript_exon_variant 0.52
rrl 1474660 n.1003G>A non_coding_transcript_exon_variant 0.52
rrl 1474662 n.1005C>G non_coding_transcript_exon_variant 0.53
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 0.53
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.52
rrl 1474688 n.1031G>C non_coding_transcript_exon_variant 0.57
rrl 1474690 n.1033C>T non_coding_transcript_exon_variant 0.57
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 0.59
rrl 1474717 n.1060_1061insGTGAG non_coding_transcript_exon_variant 0.58
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.58
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.6
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.61
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.63
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.64
rrl 1474777 n.1120T>G non_coding_transcript_exon_variant 0.64
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.65
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 0.65
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.65
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.66
rrl 1474801 n.1144G>A non_coding_transcript_exon_variant 0.65
rrl 1474802 n.1145T>C non_coding_transcript_exon_variant 0.66
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.71
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 0.68
rrl 1474896 n.1239A>T non_coding_transcript_exon_variant 0.48
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.38
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.35
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.37
rrl 1475129 n.1472G>A non_coding_transcript_exon_variant 0.12
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 0.13
rrl 1475175 n.1518G>C non_coding_transcript_exon_variant 0.13
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.16
rrl 1475655 n.1998T>C non_coding_transcript_exon_variant 0.2
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.21
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.45
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.45
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.47
rrl 1475740 n.2083G>C non_coding_transcript_exon_variant 0.56
rrl 1475747 n.2090A>G non_coding_transcript_exon_variant 0.58
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.56
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.54
rrl 1475760 n.2103C>T non_coding_transcript_exon_variant 0.54
rrl 1475761 n.2105delG non_coding_transcript_exon_variant 0.57
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.61
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.64
rrl 1475781 n.2124T>C non_coding_transcript_exon_variant 0.67
rrl 1475788 n.2131C>G non_coding_transcript_exon_variant 0.67
rrl 1475882 n.2225C>T non_coding_transcript_exon_variant 0.72
rrl 1475883 n.2226A>G non_coding_transcript_exon_variant 0.72
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.7
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.72
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.73
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.75
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.73
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.73
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.64
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.56
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.55
rrl 1475982 n.2325G>A non_coding_transcript_exon_variant 0.56
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.56
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.53
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.53
rrl 1476015 n.2358G>C non_coding_transcript_exon_variant 0.45
rrl 1476025 n.2368G>T non_coding_transcript_exon_variant 0.39
rrl 1476035 n.2378_2379insC non_coding_transcript_exon_variant 0.41
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.38
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.38
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.36
rrl 1476058 n.2401T>C non_coding_transcript_exon_variant 0.35
rrl 1476071 n.2414C>G non_coding_transcript_exon_variant 0.23
rrl 1476076 n.2419A>G non_coding_transcript_exon_variant 0.23
rrl 1476081 n.2424A>G non_coding_transcript_exon_variant 0.23
rrl 1476082 n.2425T>C non_coding_transcript_exon_variant 0.23
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.23
rrl 1476087 n.2430C>T non_coding_transcript_exon_variant 0.23
rrl 1476088 n.2431A>G non_coding_transcript_exon_variant 0.24
rrl 1476097 n.2440C>G non_coding_transcript_exon_variant 0.23
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.23
rrl 1476100 n.2443A>T non_coding_transcript_exon_variant 0.23
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.23
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.24
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.24
rrl 1476113 n.2456T>A non_coding_transcript_exon_variant 0.23
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.26
rrl 1476126 n.2469C>T non_coding_transcript_exon_variant 0.37
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 0.37
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.39
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.52
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.52
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.64
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.64
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.64
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.68
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.68
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.73
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.68
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.66
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.66
rrl 1476255 n.2598A>G non_coding_transcript_exon_variant 0.66
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.66
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.65
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.62
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.61
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.6
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.61
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.61
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.62
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.6
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.6
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.61
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.62
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.62
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.73
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.72
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.75
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.69
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.58
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.58
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.58
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.58
rrl 1476528 n.2871A>G non_coding_transcript_exon_variant 0.58
rrl 1476529 n.2872A>T non_coding_transcript_exon_variant 0.58
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.58
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.56
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.56
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.56
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.6
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.62
rrl 1476596 n.2939C>T non_coding_transcript_exon_variant 0.58
rrl 1476601 n.2944G>A non_coding_transcript_exon_variant 0.55
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.43
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.42
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.36
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.39
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.41
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 0.42
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.42
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.45
rpsA 1833952 c.411C>T synonymous_variant 0.12
rpsA 1833955 c.414G>C synonymous_variant 0.12
rpsA 1833973 c.432G>C synonymous_variant 0.13
rpsA 1833979 c.438T>C synonymous_variant 0.13
rpsA 1833985 c.444G>C synonymous_variant 0.15
rpsA 1833988 c.447C>G synonymous_variant 0.15
rpsA 1833994 c.453G>C synonymous_variant 0.15
rpsA 1834000 c.459G>C synonymous_variant 0.13
rpsA 1834012 c.471G>C synonymous_variant 0.11
rpsA 1834015 c.474G>C synonymous_variant 0.11
rpsA 1834102 c.561T>C synonymous_variant 0.11
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2155674 c.438G>C synonymous_variant 0.14
katG 2155680 c.432G>C synonymous_variant 0.16
katG 2155689 c.421_423delTTGinsCTC synonymous_variant 0.14
katG 2155696 p.Ala139Gly missense_variant 0.15
katG 2155704 c.408C>G synonymous_variant 0.14
katG 2155716 c.396T>C synonymous_variant 0.15
katG 2155722 c.390G>C synonymous_variant 0.16
katG 2155728 c.384G>C synonymous_variant 0.13
katG 2155735 p.Met126Gln missense_variant 0.12
katG 2155741 p.Gly124Ala missense_variant 0.12
katG 2155743 c.369G>C synonymous_variant 0.12
katG 2155746 c.366C>G synonymous_variant 0.12
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289989 c.-748C>A upstream_gene_variant 0.12
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
clpC1 4039670 p.Val345Ile missense_variant 0.15
clpC1 4039694 c.1011G>C synonymous_variant 0.14
clpC1 4039697 c.1008C>G synonymous_variant 0.13
clpC1 4039709 p.Ile332Leu missense_variant 0.13
clpC1 4039714 p.Tyr331His missense_variant 0.13
clpC1 4039724 c.981A>G synonymous_variant 0.14
clpC1 4039820 c.885T>G synonymous_variant 0.11
clpC1 4039850 c.855T>C synonymous_variant 0.12
clpC1 4039853 c.852G>C synonymous_variant 0.12
clpC1 4039865 c.840T>C synonymous_variant 0.18
clpC1 4039875 p.Asn277Arg missense_variant 0.18
clpC1 4039898 c.807C>G synonymous_variant 0.2
clpC1 4039904 c.801A>G synonymous_variant 0.19
clpC1 4039929 c.775_776delAGinsTC synonymous_variant 0.17
clpC1 4039931 c.774T>C synonymous_variant 0.17
clpC1 4039934 c.771G>C synonymous_variant 0.16
clpC1 4039945 p.Ser254Ala missense_variant 0.16
clpC1 4039946 c.759A>C synonymous_variant 0.16
clpC1 4039949 c.756G>C synonymous_variant 0.16
clpC1 4039952 c.753T>C synonymous_variant 0.17
clpC1 4039958 c.747G>C synonymous_variant 0.17
clpC1 4039967 p.Gln246His missense_variant 0.16
clpC1 4039982 c.723G>C synonymous_variant 0.17
clpC1 4040000 p.His235Lys missense_variant 0.18
clpC1 4040003 c.702G>C synonymous_variant 0.18
clpC1 4040018 c.687G>C synonymous_variant 0.19
clpC1 4040021 c.684A>C synonymous_variant 0.19
clpC1 4040024 c.681A>G synonymous_variant 0.18
clpC1 4040033 c.672G>C synonymous_variant 0.19
clpC1 4040057 c.648C>T synonymous_variant 0.16
clpC1 4040063 c.642G>C synonymous_variant 0.16
clpC1 4040084 c.621C>T synonymous_variant 0.14
clpC1 4040087 c.618G>C synonymous_variant 0.14
clpC1 4040090 c.615T>C synonymous_variant 0.13
clpC1 4040093 c.612C>G synonymous_variant 0.13
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 1.0
embA 4244809 p.Phe526Tyr missense_variant 0.12
embB 4249408 c.2895G>A synonymous_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0