EBG00000313325 - n.958T>C
Drug resistance types
56 Sensitive
5 RR-TB
36 HR-TB
14 MDR-TB
18 Pre-XDR-TB
0 XDR-TB
10 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1.1 | 2 |
| lineage2.2.1 | 25 |
| lineage2.2.2 | 18 |
| lineage4.8 | 6 |
| lineage1.2.2.1;lineage4 | 1 |
| lineage4.3.3 | 3 |
| lineage2.2.2;lineage4 | 5 |
| lineage4.5 | 5 |
| lineage4.9.1 | 2 |
| lineage4.3.4.2.1 | 13 |
| lineage1.2.2.2 | 3 |
| lineage3 | 2 |
| lineage4.1.1.3 | 1 |
| lineage4.1.2 | 1 |
| lineage4.9 | 12 |
| lineage4.1.2.1 | 4 |
| lineage3.1.1 | 2 |
| lineage6.1.2 | 1 |
| lineage4 | 2 |
| lineage2.2.1;lineage2.2.2 | 3 |
| lineage4.1.1.1 | 2 |
| lineage2.2;lineage4 | 1 |
| La1.6 | 1 |
| lineage4.6.1.2 | 1 |
| lineage6.1.3 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.4.2 | 4 |
| lineage4.2.1 | 2 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.4.1.1 | 2 |
| lineage1.2.2.1 | 1 |
| lineage4.1.2;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| lineage4.3.4.2 | 2 |
| lineage4.3.4.1;lineage4.9 | 1 |
| M.canetti;lineage2.1 | 1 |
| lineage2.2.1.1;lineage4 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.3.4.1 | 1 |
| lineage3.1.2 | 1 |
| lineage4.2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 139 |
Geographic prevalence
Country level data for this variant is available for 12 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1013600 | Sensitive | lineage2.2.1.1 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | ERR4820484 | Sensitive | lineage4.8 | None | ERR212112 | Sensitive | lineage1.2.2.1;lineage4 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | ERR736818 | Sensitive | lineage4.3.3 | None | ERR212015 | Sensitive | lineage4.8 | None | SRR1049006 | HR-TB | lineage2.2.2;lineage4 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SRR1013622 | Pre-XDR-TB | lineage2.2.2 | None | SRR11972175 | Sensitive | lineage2.2.1 | None | ERR161113 | Other | lineage4.8 | mw | SRR1013630 | Pre-XDR-TB | lineage2.2.2;lineage4 | None | ERR190392 | Sensitive | lineage4.9.1 | mw | SRR1013607 | HR-TB | lineage2.2.2 | None | SRR10315558 | RR-TB | lineage2.2.1 | None | ERR176482 | Sensitive | lineage4.3.4.2.1 | None | ERR216953 | Sensitive | lineage4.3.4.2.1 | None | SRR12199409 | Other | lineage1.2.2.2 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | SRR1013577 | HR-TB | lineage2.2.2 | None | SRR1013613 | Sensitive | lineage2.2.1 | None | SRR1013596 | Sensitive | lineage3 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | ERR036200 | Sensitive | lineage4.1.2 | None | SRR1173385 | Sensitive | lineage4.9 | None | ERR9786498 | Sensitive | lineage4.1.2.1 | None | ERR181906 | Sensitive | lineage3.1.1 | mw | ERR176489 | Sensitive | lineage4.3.4.2.1 | None | ERR9787033 | Sensitive | lineage6.1.2 | None | SRR6797751 | MDR-TB | lineage2.2.1 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SRR1013621 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | ERR176780 | Sensitive | lineage4.9 | None | SRR6785282 | Other | lineage4.3.3 | None | ERR176801 | Sensitive | lineage4.3.4.2.1 | mw | ERR176619 | Sensitive | lineage4.9 | None | SRR1013609 | Sensitive | lineage4 | None | SRR1048995 | HR-TB | lineage4.5 | None | SRR1013583 | Sensitive | lineage2.2.2 | None | SAMN02360571 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1172177 | HR-TB | lineage4.1.1.1 | None | SRR1013633 | MDR-TB | lineage2.2.2 | None | ERR4819784 | Other | lineage4.1.2.1 | None | SRR1048885 | HR-TB | lineage2.2;lineage4 | None | ERR10796559 | Other | lineage4.9 | None | ERR216910 | Sensitive | lineage4.3.4.2.1 | None | SRR10993944 | Other | La1.6 | None | ERR6358728 | MDR-TB | lineage4.6.1.2 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | ERR037485 | Sensitive | lineage4.3.4.2.1 | mw | ERR736820 | MDR-TB | lineage1.2.2.2 | None | ERR176814 | Sensitive | lineage4.3.4.2.1 | mw | SRR1048998 | HR-TB | lineage2.2.1 | None | ERR1334032 | Other | lineage6.1.3 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SRR6785301 | Sensitive | lineage2.2.1 | None | ERR2179695 | Sensitive | lineage4.5 | None | SRR1013578 | HR-TB | lineage2.2.2;lineage4 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SAMN02360577 | HR-TB | lineage3 | None | SRR1013581 | Pre-XDR-TB | lineage2.2.1 | None | ERR245848 | Sensitive | lineage4.3.4.2.1 | mw | ERR4769516 | Sensitive | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR1013565 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048969 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1048968 | HR-TB | lineage2.2.1;lineage2.2.2 | None | ERR8773690 | HR-TB | lineage4.2.1 | None | SRR1172710 | Sensitive | lineage1.2.2.2 | None | ERR181771 | Sensitive | lineage3.1.1 | None | SRR1013618 | RR-TB | lineage2.2.1;lineage4 | None | ERR11465581 | MDR-TB | lineage4.4.1.1 | None | SRR1013568 | Pre-XDR-TB | lineage2.2.2 | None | ERR108125 | RR-TB | lineage4.9 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR22424765 | HR-TB | lineage4.8 | None | ERR176811 | Sensitive | lineage4.9.1 | None | ERR163963 | Sensitive | lineage1.2.2.1 | mw | SRR1172090 | MDR-TB | lineage4.4.1.1 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR6982246 | RR-TB | lineage4.1.2;lineage4.9 | None | SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013598 | Sensitive | lineage2.2.2;lineage4 | None | ERR037535 | Sensitive | lineage4.3.4.2.1 | None | SRR1013612 | Sensitive | lineage4.5 | None | ERR8665802 | MDR-TB | lineage2.2.1 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1049004 | HR-TB | lineage2.2.2 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | ERR126603 | Sensitive | lineage4.3.3 | None | ERR1063888 | HR-TB | lineage1.1.2 | None | ERR4821811 | Sensitive | lineage4.9 | None | ERR773795 | Sensitive | lineage4.3.4.2 | None | ERR4828785 | MDR-TB | lineage4.1.2.1 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | SRR11972188 | MDR-TB | lineage2.2.1 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR1013629 | Pre-XDR-TB | lineage2.2.2 | None | ERR10796558 | Sensitive | lineage4.3.4.1;lineage4.9 | None | ERR036247 | Sensitive | lineage4.3.4.2.1 | mw | ERR323041 | MDR-TB | M.canetti;lineage2.1 | None | SRR1013599 | HR-TB | lineage2.2.1.1;lineage4 | None | ERR221563 | Sensitive | lineage1.1.3.2 | mw | SRR1013597 | Sensitive | lineage2.2.2;lineage4 | None | SAMN02403610 | MDR-TB | lineage4.1.1.1 | None | ERR323061 | Sensitive | lineage4.9 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR1013611 | Sensitive | lineage4.5 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | SRR14334195 | Other | lineage2.2.1 | None | ERR987734 | HR-TB | lineage4.3.4.2 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | ERR2229198 | Sensitive | lineage4.8 | None | SAMN02360590 | MDR-TB | lineage2.2.2 | None | ERR037506 | Sensitive | lineage4.3.4.2.1 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR176565 | Sensitive | lineage4.3.4.2.1 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | ERR161086 | Sensitive | lineage3.1.2 | mw | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | ERR4818869 | Sensitive | lineage4.2.2.2 | None | SRR1184308 | RR-TB | lineage4.9 | None | ERR11465626 | Sensitive | lineage4.3.4.2.1 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR1013610 | Sensitive | lineage4 | None | SRR1049007 | HR-TB | lineage2.2.2 | None | ERR11465829 | Sensitive | lineage4.9 | None | ERR4811101 | Other | lineage4.4.2 | None |
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