Run ID: ERR037506
Sample name:
Date: 31-03-2023 08:34:50
Number of reads: 9095757
Percentage reads mapped: 88.12
Strain: lineage4.3.4.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 | 1.0 |
lineage4.3.4.2 | Euro-American (LAM) | LAM1;LAM4;LAM11 | RD174 | 1.0 |
lineage4.3.4.2.1 | Euro-American (LAM) | LAM11 | RD174 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6140 | p.Val301Leu | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.99 |
rpoB | 759831 | p.Thr9Pro | missense_variant | 0.33 |
rpoB | 762249 | p.Leu815Val | missense_variant | 0.31 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.3 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 0.99 |
mmpR5 | 779371 | p.Ala128Pro | missense_variant | 0.24 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
atpE | 1461019 | c.-26C>A | upstream_gene_variant | 0.22 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472138 | n.293C>T | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472147 | n.302G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472151 | n.306C>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472700 | n.855C>T | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472708 | n.863T>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472786 | n.941C>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472803 | n.958T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472953 | n.1108G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474199 | n.542G>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474200 | n.545delT | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474218 | n.561T>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474228 | n.571T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474252 | n.595T>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474380 | n.723G>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476229 | n.2572C>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476251 | n.2594T>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476353 | n.2696G>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476359 | n.2702C>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.16 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.33 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.22 |
eis | 2715586 | c.-254G>C | upstream_gene_variant | 0.41 |
pepQ | 2859381 | c.1038C>G | synonymous_variant | 0.22 |
ribD | 2987307 | p.Ala157Pro | missense_variant | 0.18 |
Rv2752c | 3064552 | p.Arg547Pro | missense_variant | 0.21 |
thyA | 3073806 | c.666C>G | synonymous_variant | 0.22 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339550 | p.Gly145Trp | missense_variant | 0.19 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612009 | p.Ala370Thr | missense_variant | 1.0 |
fbiB | 3641955 | p.Gly141Arg | missense_variant | 0.26 |
fbiB | 3642734 | c.1200G>C | synonymous_variant | 0.18 |
fbiB | 3642772 | p.Asp413Ala | missense_variant | 0.21 |
alr | 3840719 | c.702A>G | synonymous_variant | 1.0 |
ddn | 3987013 | p.Gly57Ala | missense_variant | 0.22 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
clpC1 | 4038857 | c.1848C>A | synonymous_variant | 0.15 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.29 |
embC | 4239842 | c.-21C>A | upstream_gene_variant | 0.16 |
embC | 4242425 | p.Arg855Gly | missense_variant | 0.16 |
embC | 4242476 | p.Pro872Ala | missense_variant | 0.26 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.37 |
embC | 4242827 | p.Leu989Val | missense_variant | 0.2 |
ubiA | 4269529 | p.Ala102Gly | missense_variant | 0.27 |
ethA | 4327672 | c.-199G>A | upstream_gene_variant | 0.24 |
whiB6 | 4338371 | p.Thr51Pro | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 0.99 |