EBG00000313339 - n.545delT
Drug resistance types
114 Sensitive
12 RR-TB
9 HR-TB
19 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
168 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.3 | 5 |
| La1.2 | 1 |
| lineage4.8 | 17 |
| lineage3 | 13 |
| lineage4 | 2 |
| lineage4.3.4.2.1 | 5 |
| lineage4.3.3 | 13 |
| lineage4.9 | 154 |
| lineage4.1.2.1 | 14 |
| lineage4.6.2.2 | 3 |
| lineage4.3.4.1 | 4 |
| lineage4.1.2 | 2 |
| lineage3;lineage4.9 | 3 |
| lineage2.2.1 | 16 |
| lineage4.6.1.2 | 1 |
| lineage2.2.1.1 | 2 |
| lineage3;lineage4 | 2 |
| lineage1.2.2 | 2 |
| lineage2.2.2 | 5 |
| lineage4.7 | 2 |
| lineage3.1.1 | 1 |
| lineage1.1.1 | 2 |
| lineage4.4.2 | 1 |
| lineage4.4.1.1 | 8 |
| lineage4.5 | 1 |
| lineage3.1.2.1 | 5 |
| La1.3;lineage1.2.2.2 | 1 |
| lineage1.1.3.1 | 3 |
| lineage4.8.1 | 2 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4.2.1.1 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.2.2.2 | 2 |
| lineage3.1.2 | 1 |
| lineage5 | 1 |
| La1.3 | 1 |
| lineage4.1.3 | 1 |
| lineage4.2.1 | 2 |
| La1.8.1 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.3.2 | 3 |
| 1 | |
| lineage4.1 | 2 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage1.2.1.1 | 2 |
| lineage3.1 | 1 |
| lineage1.1.3.3 | 1 |
| lineage4.3.4.2 | 2 |
| lineage4.1.1.1 | 4 |
| lineage2.2;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.3.4.1;lineage4.9 | 1 |
| lineage4.3 | 1 |
| lineage4.6.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 327 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4819175 | Other | lineage4.1.1.3 | gb | ERR4769418 | Other | La1.2 | None | ERR4819555 | Other | lineage4.8 | None | ERR4820746 | Other | lineage3 | None | ERR4814312 | Other | lineage4 | None | ERR4820019 | Other | lineage4.3.4.2.1 | None | ERR10796599 | Other | lineage4.8 | None | ERR10796597 | Other | lineage4.3.3 | None | SRR1208431 | Sensitive | lineage4.9 | None | SRR1208574 | Sensitive | lineage4.9 | None | ERR4816493 | Other | lineage4.1.2.1 | None | ERR11465830 | Sensitive | lineage4.9 | None | ERR4815910 | Other | lineage4.1.2.1 | None | ERR4819699 | HR-TB | lineage4.6.2.2 | gb | ERR4820324 | Other | lineage4 | None | SRR1202520 | Sensitive | lineage4.9 | None | SRR1208779 | Sensitive | lineage4.9 | None | ERR10796562 | Other | lineage4.3.4.1 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | ERR4822104 | Other | lineage3;lineage4.9 | None | SRR1202401 | Sensitive | lineage4.9 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR1202538 | Sensitive | lineage4.9 | None | SRR1208342 | Other | lineage4.9 | None | ERR4816610 | Other | lineage4.3.3 | None | ERR4816310 | HR-TB | lineage4.6.1.2 | None | ERR4814362 | Other | lineage4.8 | None | ERR4819017 | Other | lineage3 | None | SRR1209046 | Sensitive | lineage4.9 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | ERR036200 | Sensitive | lineage4.1.2 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR1208478 | Sensitive | lineage4.9 | None | ERR4815898 | Other | lineage3 | None | ERR4820959 | Other | lineage4.1.2.1 | None | ERR176780 | Sensitive | lineage4.9 | None | SRR3675230 | Other | lineage3;lineage4 | None | ERR4769433 | RR-TB | lineage4.9 | None | SRR1208551 | Other | lineage4.9 | None | SRR7131030 | Other | lineage4.1.2.1 | None | ERR4818538 | Sensitive | lineage3 | gb | ERR10796563 | Other | lineage4.3.3 | None | ERR4818126 | Other | lineage1.2.2 | None | ERR4819784 | Other | lineage4.1.2.1 | None | ERR4821769 | Other | lineage4.1.2.1 | None | ERR4818570 | Other | lineage4.3.3 | None | ERR4818570 | Other | lineage4.3.3 | None | SRR1180041 | Sensitive | lineage4.9 | None | ERR4816425 | Other | lineage2.2.2 | None | SRR1202380 | Sensitive | lineage4.9 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR1208567 | Sensitive | lineage4.9 | None | SRR1208545 | Other | lineage4.9 | None | SRR1208561 | Other | lineage4.9 | None | SRR1202605 | Sensitive | lineage4.9 | None | SRR1208577 | Other | lineage4.9 | None | SRR1202432 | Sensitive | lineage4.9 | None | SRR7069137 | Other | lineage4.8 | None | SRR7069137 | Other | lineage4.8 | None | SRR1208673 | Sensitive | lineage4.9 | None | ERR4814905 | Sensitive | lineage4.8 | gb | ERR4815909 | Other | lineage4.8 | None | ERR037234 | Sensitive | lineage4.9 | None | ERR4817189 | Other | lineage4.7 | None | ERR245848 | Sensitive | lineage4.3.4.2.1 | mw | ERR4820188 | Other | lineage3 | gb | SRR1202427 | Sensitive | lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | SRR1202441 | Sensitive | lineage4.9 | None | SRR1208658 | Other | lineage4.9 | None | SRR2024953 | MDR-TB | lineage2.2.1 | cn | SRR1208874 | Sensitive | lineage4.9 | None | SRR1208786 | Sensitive | lineage4.9 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | ERR4819640 | RR-TB | lineage4.6.2.2 | None | ERR4817554 | Other | lineage1.1.1 | None | ERR4817584 | Other | lineage3;lineage4.9 | None | SRR1183495 | Other | lineage4.9 | None | SRR1208435 | Sensitive | lineage4.9 | None | ERR4815301 | Other | lineage4.4.2 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR10796578 | Other | lineage2.2.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR4817826 | Other | lineage4.5 | None | SRR1180456 | Other | lineage4.9 | None | SRR1183412 | Other | lineage4.9 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4816944 | Other | lineage2.2.2 | None | ERR4820833 | Other | lineage3;lineage4.9 | None | ERR4819217 | Other | La1.3;lineage1.2.2.2 | None | ERR4821958 | Other | lineage4.3.3 | gb | ERR4814617 | Other | lineage1.1.3.1 | None | SRR1202555 | Sensitive | lineage4.9 | None | SRR1208498 | Sensitive | lineage4.9 | None | SRR1208667 | Sensitive | lineage4.9 | None | SRR1202689 | Sensitive | lineage4.9 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR11465490 | Sensitive | lineage4.1.2.1 | None | SRR1208463 | Sensitive | lineage4.9 | None | SRR1202381 | Sensitive | lineage4.9 | None | ERR4819491 | Other | lineage4.1.2.1 | None | SRR1202508 | Sensitive | lineage4.9 | None | SRR1202669 | Sensitive | lineage4.9 | None | SRR1208499 | Other | lineage4.9 | None | SRR1209087 | Sensitive | lineage4.9 | None | SRR7069391 | Other | lineage4.9 | None | SRR1208535 | Sensitive | lineage4.9 | None | SRR1181500 | Sensitive | lineage4.9 | None | SRR1181542 | Other | lineage4.9 | None | SRR1183432 | Other | lineage4.9 | None | SRR1209036 | Sensitive | lineage4.9 | None | SRR1202735 | Sensitive | lineage4.9 | None | SRR1208353 | Other | lineage4.9 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR1208701 | Sensitive | lineage4.9 | None | ERR4815268 | Sensitive | lineage4.8 | None | ERR10796627 | Other | lineage4.1.2.1;lineage4.9 | None | ERR4815118 | Other | lineage2.2.2 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR4815811 | Other | lineage4.2.1.1 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | SRR1208297 | Other | lineage4.9 | None | SRR1208395 | Other | lineage4.9 | None | SRR1208879 | Sensitive | lineage4.9 | None | ERR4821214 | Other | lineage1.2.1.2.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR1183345 | Sensitive | lineage4.9 | None | SRR1202528 | Sensitive | lineage4.9 | None | SRR1208526 | Sensitive | lineage4.9 | None | SRR1208958 | Other | lineage4.9 | None | SRR1209004 | Sensitive | lineage4.9 | None | SRR1183476 | Sensitive | lineage4.9 | None | ERR4821812 | Sensitive | lineage4.8 | gb | SRR1208849 | Sensitive | lineage4.9 | None | ERR4820798 | Other | lineage3.1.2.1 | gb | ERR11465829 | Sensitive | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | ERR4822085 | Other | lineage4.8 | gb | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR7069473 | Other | lineage4.1.1.2 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | ERR4819772 | Other | lineage1.1.3.1 | None | SRR1202446 | Sensitive | lineage4.9 | None | SRR1202721 | Sensitive | lineage4.9 | None | SRR1208689 | Sensitive | lineage4.9 | None | ERR4817874 | Other | lineage3 | None | SRR1180114 | Other | lineage4.9 | None | ERR4818393 | RR-TB | lineage3;lineage4 | None | SRR1202719 | Sensitive | lineage4.9 | None | SRR6045957 | Other | lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR1181489 | Sensitive | lineage4.9 | None | SRR1208194 | Other | lineage4.9 | None | ERR4820817 | Other | lineage4.1.2.1 | None | ERR4814763 | Other | lineage2.2.1 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR1181586 | Sensitive | lineage4.9 | None | SRR1182963 | Sensitive | lineage4.9 | None | SRR1183362 | Other | lineage4.9 | None | ERR4817134 | HR-TB | lineage2.2.1 | None | SRR1202557 | Sensitive | lineage4.9 | None | SRR1183718 | Sensitive | lineage4.9 | None | ERR4814356 | Other | lineage3.1.2 | None | SRR3675245 | Other | lineage4.1.2.1 | None | ERR4816967 | Other | lineage5 | None | ERR4819192 | Other | lineage3 | None | ERR4820723 | Other | lineage4.4.1.1 | None | ERR4820723 | Other | lineage4.4.1.1 | None | ERR4821811 | Sensitive | lineage4.9 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR4769495 | Other | La1.3 | None | SRR1208405 | Sensitive | lineage4.9 | None | SRR1180128 | Other | lineage4.9 | None | SRR1202435 | Other | lineage4.9 | None | SRR1208604 | Sensitive | lineage4.9 | None | SRR1202740 | Other | lineage4.9 | None | ERR4814714 | Other | lineage3 | None | ERR4821334 | Other | lineage4.1.3 | None | SRR1180807 | Sensitive | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR1202396 | Other | lineage4.9 | None | ERR4818831 | Other | lineage3 | None | SRR7236330 | Other | La1.8.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR1181232 | Sensitive | lineage4.9 | None | SRR1202548 | Sensitive | lineage4.9 | None | SRR6045158 | Other | lineage4.9 | None | SRR1208637 | Sensitive | lineage4.9 | None | SRR1208761 | Other | lineage4.9 | None | SRR1202400 | Sensitive | lineage4.9 | None | SRR1202573 | Other | lineage4.9 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR4818407 | Other | lineage4.3.2 | None | SRR1181303 | Other | lineage4.9 | None | ERR4816510 | Other | lineage4.1.2.1 | None | SRR1208448 | Sensitive | lineage4.9 | None | ERR2515032 | Other | lineage3 | None | ERR2515032 | Other | lineage3 | None | SRR1202550 | Sensitive | lineage4.9 | None | SRR1181229 | Other | lineage4.9 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | ERR4819329 | Sensitive | lineage4.6.2.2 | None | SRR1208642 | Sensitive | lineage4.9 | None | SRR1202523 | Sensitive | lineage4.9 | None | SRR1208233 | Other | lineage4.9 | None | ERR4817060 | Other | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | ERR10796635 | Other | lineage4.8 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR4820161 | Other | lineage3 | None | SRR1208470 | Sensitive | lineage4.9 | None | SRR1209029 | Sensitive | lineage4.9 | None | SRR1183334 | Other | lineage4.9 | None | SRR11972175 | Sensitive | lineage2.2.1 | None | SRR1208979 | Other | lineage4.9 | None | ERR10796632 | Other | lineage4.3.3 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | SRR1208477 | Sensitive | lineage4.9 | None | ERR4820503 | Sensitive | lineage2.2.1 | None | SRR1180014 | Sensitive | lineage4.9 | None | ERR4819765 | Other | lineage4.1 | None | SRR1202662 | Sensitive | lineage4.9 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR10796565 | Other | lineage4.9 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4814994 | HR-TB | lineage2.2.1 | gb | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR1208238 | Other | lineage4.9 | None | ERR4822138 | Other | lineage4.1.2.1 | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR4815427 | HR-TB | lineage3.1 | gb | SRR7069800 | Other | lineage3.1.2.1 | None | ERR4817751 | Other | lineage1.1.3.3 | None | ERR4814986 | Other | lineage4.3.4.2 | None | ERR4819307 | Other | lineage4.3.2 | None | ERR4822021 | Other | lineage4.8 | gb | ERR10796633 | Other | lineage4.3.4.2 | None | ERR867575 | Other | lineage4.9 | None | SRR1183422 | Other | lineage4.9 | None | SRR1208837 | Sensitive | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR4818272 | Other | lineage4.3.2 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | SRR1183603 | Other | lineage4.9 | None | SRR1202537 | Other | lineage4.9 | None | SRR1208804 | Sensitive | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | SRR21658550 | Other | lineage1.1.1 | None | ERR10796620 | Other | lineage4.1.1.1 | None | ERR10796620 | Other | lineage4.1.1.1 | None | SRR6045267 | RR-TB | lineage4.8 | None | SRR6045267 | RR-TB | lineage4.8 | None | SRR5153833 | Other | lineage2.2.1 | None | SRR1180563 | Sensitive | lineage4.9 | None | ERR4821962 | Other | lineage4.1.1.3 | gb | ERR4815901 | Other | lineage2.2.2 | None | SRR1181573 | Other | lineage4.9 | None | SRR1208917 | Sensitive | lineage4.9 | None | SRR1208639 | Other | lineage4.9 | None | SRR1183061 | Other | lineage4.9 | None | SRR1208298 | Sensitive | lineage4.9 | None | ERR037506 | Sensitive | lineage4.3.4.2.1 | None | SRR1183020 | Other | lineage4.9 | None | SRR1208468 | Other | lineage4.9 | None | SRR1202726 | Sensitive | lineage4.9 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR867554 | Other | lineage4.3.4.1 | None | ERR4821704 | Other | lineage4.3.3 | None | SRR1208794 | Sensitive | lineage4.9 | None | ERR4819096 | Other | lineage4.4.1.1 | None | SRR1182882 | Other | lineage4.9 | None | ERR736820 | MDR-TB | lineage1.2.2.2 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1209021 | Sensitive | lineage4.9 | None | SRR1209030 | Sensitive | lineage4.9 | None | SRR1208439 | Sensitive | lineage4.9 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | ERR037535 | Sensitive | lineage4.3.4.2.1 | None | ERR10796558 | Sensitive | lineage4.3.4.1;lineage4.9 | None | ERR4816417 | Other | lineage4.9 | None | SRR1181281 | Other | lineage4.9 | None | SRR1208317 | Sensitive | lineage4.9 | None | SRR1208378 | Other | lineage4.9 | None | SRR1208678 | Sensitive | lineage4.9 | None | SRR1208260 | Sensitive | lineage4.9 | None | ERR10796593 | Other | lineage4.3 | None | ERR3276170 | Other | lineage4.1.2.1 | nl | SRR1183359 | Other | lineage4.9 | None | ERR4818988 | Other | lineage1.2.2 | None | SRR1209045 | Other | lineage4.9 | None | SRR1183461 | Other | lineage4.9 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR1180661 | Sensitive | lineage4.9 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR4821616 | Other | lineage1.1.3.1 | None | SRR6046250 | Other | lineage4.9 | None | ERR4820484 | Sensitive | lineage4.8 | None | ERR4818522 | Other | lineage3 | None | ERR4814748 | Other | lineage4.8 | None | SRR1180497 | Sensitive | lineage4.9 | None | SRR1181270 | Sensitive | lineage4.9 | None | SRR1180095 | Other | lineage4.9 | None | ERR4818691 | Other | lineage4.8 | None | SRR1208377 | Other | lineage4.9 | None | SRR1208486 | Other | lineage4.9 | None | SRR1208686 | Sensitive | lineage4.9 | None | SRR1180580 | Other | lineage4.9 | None | ERR10796598 | Other | lineage4.9 | None | ERR4815502 | Other | lineage4.1 | None | SRR1208998 | Other | lineage4.9 | None | SRR1208815 | Sensitive | lineage4.9 | None | ERR4814896 | Other | lineage2.2.1.1 | None | ERR10796577 | Other | lineage4.9 | None | ERR4821288 | Other | lineage4.7 | None | SRR1208555 | Sensitive | lineage4.9 | None |
|---|
