TB-Profiler result

Run: SRR6046250
Summary

Run ID: SRR6046250

Sample name:

Date: 04-04-2023 12:13:39

Number of reads: 33225

Percentage reads mapped: 1.73

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472307 n.462C>T non_coding_transcript_exon_variant 1.0 streptomycin
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.82 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 1.0
gyrA 8967 p.Ala556Lys missense_variant 1.0
gyrA 8996 c.1695T>C synonymous_variant 1.0
gyrA 8998 p.Leu566Trp missense_variant 1.0
rpoB 760325 c.519G>C synonymous_variant 1.0
rpoB 760331 c.525G>T synonymous_variant 1.0
rpoB 760334 c.528G>T synonymous_variant 1.0
rpoB 760340 c.534G>C synonymous_variant 1.0
rpoB 760355 p.Glu183Asp missense_variant 1.0
rpoB 760357 p.Thr184Ser missense_variant 1.0
rpoB 760361 c.555T>C synonymous_variant 1.0
rpoB 760907 c.1101C>T synonymous_variant 1.0
rpoB 760910 c.1104C>T synonymous_variant 1.0
rpoB 760916 c.1110C>T synonymous_variant 1.0
rpoB 760919 c.1113C>T synonymous_variant 1.0
rpoC 762374 c.-996G>C upstream_gene_variant 1.0
rpoC 762395 c.-975G>C upstream_gene_variant 1.0
rpoC 762398 c.-972T>C upstream_gene_variant 1.0
rpoC 762401 c.-969G>C upstream_gene_variant 1.0
rpoC 762404 c.-966T>C upstream_gene_variant 1.0
rpoC 762410 c.-960T>C upstream_gene_variant 1.0
rpoC 762416 c.-954A>G upstream_gene_variant 1.0
rpoC 762962 c.-408C>T upstream_gene_variant 1.0
rpoC 762971 c.-399G>A upstream_gene_variant 1.0
rpoC 762983 c.-387C>T upstream_gene_variant 1.0
rpoC 762989 c.-381G>C upstream_gene_variant 1.0
rpoC 762995 c.-375G>T upstream_gene_variant 1.0
rpoB 763005 p.Cys1067Val missense_variant 1.0
rpoC 763013 c.-357C>A upstream_gene_variant 1.0
rpoC 763022 c.-348C>A upstream_gene_variant 0.8
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763052 c.-318G>T upstream_gene_variant 0.8
rpoC 763053 c.-317T>C upstream_gene_variant 1.0
rpoC 763058 c.-312C>G upstream_gene_variant 1.0
rpoC 763070 c.-300T>C upstream_gene_variant 1.0
rpoC 763109 c.-261C>G upstream_gene_variant 1.0
rpoC 763115 c.-255T>C upstream_gene_variant 1.0
rpoC 763127 c.-243G>C upstream_gene_variant 0.67
rpoC 763130 c.-240G>A upstream_gene_variant 1.0
rpoC 763133 c.-237G>C upstream_gene_variant 0.67
rpoC 763136 c.-234C>T upstream_gene_variant 1.0
rpoC 763142 c.-228C>G upstream_gene_variant 1.0
rpoC 763158 c.-212C>T upstream_gene_variant 1.0
rpoC 763570 c.201G>T synonymous_variant 1.0
rpoC 763573 c.204G>C synonymous_variant 1.0
rpoC 763578 p.Phe70Tyr missense_variant 0.67
rpoC 763591 c.222C>T synonymous_variant 0.67
rpoC 763594 c.225C>T synonymous_variant 1.0
rpoC 763603 c.234C>T synonymous_variant 0.67
rpoC 763609 c.240C>T synonymous_variant 0.67
rpoC 763619 p.Arg84Lys missense_variant 1.0
rpoC 763622 p.Ala85Ser missense_variant 1.0
rpoC 763633 c.264T>C synonymous_variant 1.0
rpoC 763642 c.273G>C synonymous_variant 1.0
rpoC 763660 c.291T>G synonymous_variant 1.0
rpoC 763663 c.294C>T synonymous_variant 1.0
rpoC 763666 c.297G>T synonymous_variant 1.0
rpoC 763669 c.300C>A synonymous_variant 1.0
rpoC 763672 c.303C>G synonymous_variant 1.0
rpoC 764272 c.903G>C synonymous_variant 1.0
rpoC 764278 c.909A>G synonymous_variant 1.0
rpoC 764287 c.918C>T synonymous_variant 1.0
rpoC 764293 c.924G>C synonymous_variant 1.0
rpoC 764297 p.Met310Leu missense_variant 1.0
rpoC 764341 c.972G>T synonymous_variant 1.0
rpoC 764344 c.975C>T synonymous_variant 1.0
rpoC 764347 c.978G>A synonymous_variant 0.67
rpoC 764357 c.988_990delCTCinsTTG synonymous_variant 0.67
rpoC 764362 c.993C>T synonymous_variant 0.67
rpoC 764365 c.996C>T synonymous_variant 1.0
rpoC 764371 c.1002G>A synonymous_variant 1.0
rpoC 764377 c.1008C>T synonymous_variant 0.83
rpoC 764380 c.1011G>C synonymous_variant 1.0
rpoC 764398 c.1029G>C synonymous_variant 0.91
rpoC 764404 c.1035C>T synonymous_variant 0.91
rpoC 764405 c.1036_1038delAGGinsCGT synonymous_variant 1.0
rpoC 764428 c.1059G>T synonymous_variant 1.0
rpoC 764434 c.1065A>G synonymous_variant 1.0
rpoC 764435 c.1066_1068delAGGinsCGC synonymous_variant 1.0
rpoC 764438 p.Leu357Met missense_variant 1.0
rpoC 764441 p.Ile358Leu missense_variant 1.0
rpoC 764449 c.1080G>C synonymous_variant 1.0
rpoC 764455 c.1086G>T synonymous_variant 1.0
rpoC 764461 c.1092A>G synonymous_variant 1.0
rpoC 764470 c.1101C>G synonymous_variant 1.0
rpoC 764485 c.1116G>C synonymous_variant 1.0
rpoC 764497 c.1128A>G synonymous_variant 1.0
rpoC 764500 c.1131C>G synonymous_variant 1.0
rpoC 764506 c.1137C>T synonymous_variant 0.86
rpoC 764509 c.1140G>A synonymous_variant 1.0
rpoC 764521 c.1152T>C synonymous_variant 1.0
rpoC 764527 c.1158C>A synonymous_variant 0.67
rpoC 764536 c.1167G>T synonymous_variant 1.0
rpoC 764605 c.1236G>C synonymous_variant 1.0
rpoC 764632 c.1263T>C synonymous_variant 1.0
rpoC 764692 c.1323C>T synonymous_variant 1.0
rpoC 764713 c.1344G>C synonymous_variant 1.0
rpoC 764716 c.1347G>C synonymous_variant 1.0
rpoC 764911 c.1542A>G synonymous_variant 1.0
rpoC 764912 p.Met515Gln missense_variant 1.0
rpoC 764932 c.1563C>G synonymous_variant 1.0
rpoC 764935 c.1566T>C synonymous_variant 1.0
rpoC 764948 c.1579T>C synonymous_variant 1.0
rpoC 764968 c.1599T>C synonymous_variant 1.0
rpsL 781658 c.99A>G synonymous_variant 1.0
rpsL 781682 c.123T>C synonymous_variant 1.0
rpsL 781754 c.195G>T synonymous_variant 1.0
rpsL 781760 c.201T>C synonymous_variant 1.0
rpsL 781766 c.207C>T synonymous_variant 1.0
rpsL 781811 c.252C>T synonymous_variant 1.0
rpsL 781814 c.255C>T synonymous_variant 1.0
rpsL 781817 c.258G>T synonymous_variant 1.0
rpsL 781829 c.270G>C synonymous_variant 1.0
rpsL 781832 c.273T>C synonymous_variant 1.0
rpsL 781838 c.279G>T synonymous_variant 1.0
rpsL 781841 c.282C>T synonymous_variant 1.0
rpsL 781859 c.300T>A synonymous_variant 1.0
rpsL 781865 c.306G>C synonymous_variant 1.0
rpsL 781868 c.309T>C synonymous_variant 1.0
rpsL 781871 c.312G>C synonymous_variant 1.0
rpsL 781892 c.333A>G synonymous_variant 1.0
rpsL 781898 c.339A>C synonymous_variant 1.0
rpsL 781901 c.342C>T synonymous_variant 1.0
rrs 1471850 n.5G>T non_coding_transcript_exon_variant 1.0
rrs 1471852 n.7T>A non_coding_transcript_exon_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 1.0
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 1.0
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 1.0
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 1.0
rrs 1472027 n.184_188delCGGGA non_coding_transcript_exon_variant 1.0
rrs 1472037 n.192A>T non_coding_transcript_exon_variant 1.0
rrs 1472038 n.193_194insTA non_coding_transcript_exon_variant 1.0
rrs 1472041 n.196C>G non_coding_transcript_exon_variant 1.0
rrs 1472042 n.197_198insG non_coding_transcript_exon_variant 1.0
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 1.0
rrs 1472057 n.212C>T non_coding_transcript_exon_variant 1.0
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 1.0
rrs 1472062 n.217G>T non_coding_transcript_exon_variant 1.0
rrs 1472069 n.224G>A non_coding_transcript_exon_variant 1.0
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.58
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.98
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.99
rrs 1472123 n.278A>G non_coding_transcript_exon_variant 0.99
rrs 1472138 n.293C>A non_coding_transcript_exon_variant 0.98
rrs 1472147 n.302G>T non_coding_transcript_exon_variant 0.97
rrs 1472150 n.305T>G non_coding_transcript_exon_variant 1.0
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.99
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.96
rrs 1472278 n.433C>T non_coding_transcript_exon_variant 0.99
rrs 1472279 n.434T>C non_coding_transcript_exon_variant 0.99
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 0.99
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.99
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.99
rrs 1472296 n.454_458delTCCGG non_coding_transcript_exon_variant 1.0
rrs 1472303 n.458G>C non_coding_transcript_exon_variant 1.0
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.99
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.99
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.99
rrs 1472431 n.586G>A non_coding_transcript_exon_variant 0.99
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.99
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.99
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.99
rrs 1472447 n.602C>T non_coding_transcript_exon_variant 0.99
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.99
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 1.0
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 1.0
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.99
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 0.99
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.99
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.99
rrs 1472504 n.659A>T non_coding_transcript_exon_variant 0.98
rrs 1472505 n.660G>A non_coding_transcript_exon_variant 0.98
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.99
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.92
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.92
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 0.92
rrs 1472574 n.729T>A non_coding_transcript_exon_variant 0.92
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.92
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.9
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.89
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.95
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.81
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.97
rrs 1472690 n.845C>T non_coding_transcript_exon_variant 0.99
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.99
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.83
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 1.0
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 1.0
rrs 1472840 n.995A>T non_coding_transcript_exon_variant 1.0
rrs 1472843 n.998_999insT non_coding_transcript_exon_variant 1.0
rrs 1472846 n.1002delG non_coding_transcript_exon_variant 1.0
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 1.0
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 1.0
rrs 1472855 n.1011_1012insGT non_coding_transcript_exon_variant 1.0
rrs 1472874 n.1029C>T non_coding_transcript_exon_variant 1.0
rrs 1472875 n.1030T>A non_coding_transcript_exon_variant 1.0
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 1.0
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 1.0
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 1.0
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.99
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.98
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.98
rrs 1473089 n.1244A>T non_coding_transcript_exon_variant 0.92
rrs 1473091 n.1246G>C non_coding_transcript_exon_variant 0.91
rrs 1473094 n.1249T>A non_coding_transcript_exon_variant 0.91
rrs 1473099 n.1254T>G non_coding_transcript_exon_variant 0.91
rrs 1473100 n.1255G>C non_coding_transcript_exon_variant 0.99
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.96
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 1.0
rrs 1473109 n.1264T>G non_coding_transcript_exon_variant 0.91
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.96
rrs 1473120 n.1275C>G non_coding_transcript_exon_variant 0.9
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.95
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 1.0
rrs 1473129 n.1284C>T non_coding_transcript_exon_variant 0.95
rrs 1473135 n.1290C>T non_coding_transcript_exon_variant 0.92
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.95
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.95
rrs 1473202 n.1357C>T non_coding_transcript_exon_variant 0.93
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.99
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 1.0
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 1.0
rrl 1473676 n.19G>A non_coding_transcript_exon_variant 0.86
rrl 1473696 n.39T>C non_coding_transcript_exon_variant 0.25
rrl 1473697 n.40C>G non_coding_transcript_exon_variant 1.0
rrl 1473698 n.41G>C non_coding_transcript_exon_variant 0.75
rrl 1473699 n.42A>T non_coding_transcript_exon_variant 1.0
rrl 1473700 n.43G>A non_coding_transcript_exon_variant 0.75
rrl 1473719 n.62G>A non_coding_transcript_exon_variant 0.71
rrl 1473728 n.71A>T non_coding_transcript_exon_variant 0.71
rrl 1473743 n.86C>T non_coding_transcript_exon_variant 0.75
rrl 1473750 n.93C>T non_coding_transcript_exon_variant 0.75
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 1.0
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 1.0
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 1.0
rrl 1473811 n.154C>T non_coding_transcript_exon_variant 1.0
rrl 1473813 n.156C>T non_coding_transcript_exon_variant 1.0
rrl 1473823 n.166T>C non_coding_transcript_exon_variant 1.0
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.83
rrl 1473880 n.223A>G non_coding_transcript_exon_variant 0.83
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 1.0
rrl 1473895 n.238C>T non_coding_transcript_exon_variant 0.83
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 1.0
rrl 1473899 n.242A>T non_coding_transcript_exon_variant 1.0
rrl 1473905 n.248T>C non_coding_transcript_exon_variant 0.83
rrl 1474110 n.453A>T non_coding_transcript_exon_variant 1.0
rrl 1474123 n.466A>G non_coding_transcript_exon_variant 1.0
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 1.0
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 1.0
rrl 1474143 n.486T>C non_coding_transcript_exon_variant 1.0
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 1.0
rrl 1474200 n.545delT non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474253 n.596A>T non_coding_transcript_exon_variant 0.97
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 0.97
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 1.0
rrl 1474293 n.637_650delCCTCTCCGGAGGAG non_coding_transcript_exon_variant 1.0
rrl 1474309 n.652G>T non_coding_transcript_exon_variant 0.98
rrl 1474311 n.654_655insT non_coding_transcript_exon_variant 0.98
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 1.0
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 1.0
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 1.0
rrl 1474384 n.727C>T non_coding_transcript_exon_variant 0.92
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 1.0
rrl 1474393 n.736A>G non_coding_transcript_exon_variant 0.33
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 1.0
rrl 1474406 n.749T>C non_coding_transcript_exon_variant 1.0
rrl 1474413 n.757_777delCCCACACGCGCATACGCGCGT non_coding_transcript_exon_variant 1.0
rrl 1474437 n.781_782delAA non_coding_transcript_exon_variant 1.0
rrl 1474447 n.790G>A non_coding_transcript_exon_variant 0.88
rrl 1474451 n.794T>C non_coding_transcript_exon_variant 0.95
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 1.0
rrl 1474487 n.830G>T non_coding_transcript_exon_variant 0.97
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 1.0
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.95
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.93
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 1.0
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 1.0
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.93
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.93
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 1.0
rrl 1474517 n.860C>G non_coding_transcript_exon_variant 0.95
rrl 1474527 n.870T>G non_coding_transcript_exon_variant 0.98
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474542 n.885A>C non_coding_transcript_exon_variant 0.98
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 1.0
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 1.0
rrl 1474634 n.977T>G non_coding_transcript_exon_variant 1.0
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 1.0
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474658 n.1001A>G non_coding_transcript_exon_variant 1.0
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 1.0
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 1.0
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.98
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.97
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.97
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474798 n.1141C>G non_coding_transcript_exon_variant 0.96
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.96
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.96
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.97
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.99
rrl 1474825 n.1168G>A non_coding_transcript_exon_variant 0.96
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.97
rrl 1474837 n.1180A>G non_coding_transcript_exon_variant 0.95
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 1.0
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.96
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.96
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.97
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.99
rrl 1474921 n.1264C>T non_coding_transcript_exon_variant 0.95
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.96
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 1.0
rrl 1475175 n.1518G>C non_coding_transcript_exon_variant 1.0
rrl 1475176 n.1519G>A non_coding_transcript_exon_variant 1.0
rrl 1475187 n.1530C>T non_coding_transcript_exon_variant 1.0
rrl 1475188 n.1531C>G non_coding_transcript_exon_variant 1.0
rrl 1475196 n.1539T>A non_coding_transcript_exon_variant 1.0
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 1.0
rrl 1475480 n.1823A>G non_coding_transcript_exon_variant 1.0
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 1.0
rrl 1475485 n.1828C>T non_coding_transcript_exon_variant 1.0
rrl 1475486 n.1829A>T non_coding_transcript_exon_variant 1.0
rrl 1475499 n.1842C>T non_coding_transcript_exon_variant 1.0
rrl 1475514 n.1857G>A non_coding_transcript_exon_variant 1.0
rrl 1475522 n.1865A>T non_coding_transcript_exon_variant 1.0
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 1.0
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 1.0
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 1.0
rrl 1475542 n.1885A>G non_coding_transcript_exon_variant 1.0
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 1.0
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 1.0
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 1.0
rrl 1475574 n.1917C>T non_coding_transcript_exon_variant 1.0
rrl 1475672 n.2015C>T non_coding_transcript_exon_variant 0.67
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 0.67
rrl 1475704 n.2047C>T non_coding_transcript_exon_variant 0.5
rrl 1475713 n.2056C>T non_coding_transcript_exon_variant 0.96
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 1.0
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.99
rrl 1475759 n.2102C>A non_coding_transcript_exon_variant 0.98
rrl 1475760 n.2103C>T non_coding_transcript_exon_variant 0.61
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.99
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 1.0
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 1.0
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 1.0
rrl 1475769 n.2112_2113insC non_coding_transcript_exon_variant 0.99
rrl 1475877 n.2220C>G non_coding_transcript_exon_variant 0.95
rrl 1475878 n.2221T>A non_coding_transcript_exon_variant 0.95
rrl 1475879 n.2222T>C non_coding_transcript_exon_variant 0.95
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.96
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 1.0
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.96
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.96
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.96
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.96
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.96
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 1.0
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 1.0
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.94
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.97
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.97
rrl 1476029 n.2372A>G non_coding_transcript_exon_variant 1.0
rrl 1476113 n.2456T>G non_coding_transcript_exon_variant 0.67
rrl 1476116 n.2459A>G non_coding_transcript_exon_variant 0.67
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.96
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.99
rrl 1476188 n.2531C>T non_coding_transcript_exon_variant 0.96
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 1.0
rrl 1476213 n.2556G>T non_coding_transcript_exon_variant 0.95
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 1.0
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 1.0
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.9
rrl 1476234 n.2577G>A non_coding_transcript_exon_variant 0.82
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.81
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.99
rrl 1476255 n.2598A>T non_coding_transcript_exon_variant 0.79
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.79
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.99
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.82
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 1.0
rrl 1476298 n.2641C>A non_coding_transcript_exon_variant 0.8
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.8
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.97
rrl 1476307 n.2650A>T non_coding_transcript_exon_variant 0.8
rrl 1476309 n.2652G>T non_coding_transcript_exon_variant 0.8
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 1.0
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.99
rrl 1476523 n.2867delC non_coding_transcript_exon_variant 1.0
rrl 1476535 n.2878G>A non_coding_transcript_exon_variant 0.95
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 1.0
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.98
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.98
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 1.0
rpsA 1833940 c.399C>T synonymous_variant 1.0
rpsA 1833949 c.408T>C synonymous_variant 1.0
rpsA 1833961 c.420C>G synonymous_variant 1.0
rpsA 1833970 c.429G>T synonymous_variant 1.0
rpsA 1833976 c.435C>T synonymous_variant 1.0
rpsA 1833979 c.438T>C synonymous_variant 1.0
rpsA 1833988 c.447C>T synonymous_variant 1.0
rpsA 1833991 c.450C>T synonymous_variant 1.0
rpsA 1833994 c.453G>C synonymous_variant 1.0
rpsA 1834000 c.459G>A synonymous_variant 1.0
rpsA 1834003 c.462G>A synonymous_variant 1.0
rpsA 1834012 c.471G>C synonymous_variant 1.0
rpsA 1834015 c.474G>T synonymous_variant 1.0
rpsA 1834018 c.477C>T synonymous_variant 1.0
rpsA 1834025 p.Gln162Glu missense_variant 1.0
rpsA 1834030 c.489C>T synonymous_variant 1.0
rpsA 1834039 c.498C>T synonymous_variant 1.0
rpsA 1834040 p.Lys167Gln missense_variant 1.0
rpsA 1834045 c.504G>A synonymous_variant 1.0
rpsA 1834046 p.Ile169Leu missense_variant 1.0
rpsA 1834051 p.Glu170Asp missense_variant 1.0
rpsA 1834054 c.513C>T synonymous_variant 1.0
rpsA 1834090 c.549G>T synonymous_variant 1.0
rpsA 1834093 c.552G>T synonymous_variant 1.0
rpsA 1834189 c.648G>T synonymous_variant 1.0
rpsA 1834195 c.654G>C synonymous_variant 1.0
rpsA 1834210 c.669C>T synonymous_variant 1.0
rpsA 1834211 p.Ala224Ser missense_variant 1.0
rpsA 1834219 c.678C>G synonymous_variant 1.0
rpsA 1834222 c.681T>C synonymous_variant 1.0
rpsA 1834225 c.684C>G synonymous_variant 1.0
rpsA 1834228 c.687C>T synonymous_variant 1.0
rpsA 1834234 c.693G>C synonymous_variant 1.0
rpsA 1834246 c.705G>A synonymous_variant 1.0
rpsA 1834249 c.708T>C synonymous_variant 1.0
rpsA 1834252 c.711C>T synonymous_variant 1.0
rpsA 1834261 c.720A>G synonymous_variant 1.0
rpsA 1834264 c.723G>C synonymous_variant 1.0
rpsA 1834285 c.744G>A synonymous_variant 0.88
rpsA 1834294 c.753G>T synonymous_variant 0.88
rpsA 1834298 p.Gln253Thr missense_variant 0.88
rpsA 1834315 c.774C>A synonymous_variant 0.86
rpsA 1834321 c.780C>T synonymous_variant 0.86
rpsA 1834327 c.786G>T synonymous_variant 0.67
rpsA 1834330 c.789C>G synonymous_variant 0.67
rpsA 1834451 c.910T>C synonymous_variant 1.0
rpsA 1834459 c.918G>A synonymous_variant 1.0
rpsA 1834468 c.927A>G synonymous_variant 1.0
rpsA 1834474 c.933C>T synonymous_variant 1.0
rpsA 1834483 c.942G>A synonymous_variant 1.0
rpsA 1834486 c.945G>A synonymous_variant 1.0
rpsA 1834489 c.948T>C synonymous_variant 1.0
rpsA 1834495 c.954G>A synonymous_variant 1.0
rpsA 1834504 c.963G>T synonymous_variant 1.0
rpsA 1834523 p.Glu328Gln missense_variant 0.93
rpsA 1834528 c.987T>C synonymous_variant 1.0
rpsA 1834540 c.999G>T synonymous_variant 1.0
rpsA 1834543 c.1002C>A synonymous_variant 1.0
rpsA 1834546 c.1005T>C synonymous_variant 1.0
rpsA 1834552 c.1011G>T synonymous_variant 0.93
rpsA 1834555 c.1014T>C synonymous_variant 1.0
rpsA 1834556 p.Ala339Asn missense_variant 1.0
rpsA 1834561 c.1020C>T synonymous_variant 0.93
rpsA 1834567 p.Asp342Glu missense_variant 0.93
rpsA 1834570 p.Asp343Glu missense_variant 0.93
rpsA 1834573 c.1032G>C synonymous_variant 0.93
rpsA 1834600 c.1059G>C synonymous_variant 0.82
rpsA 1834606 c.1065C>T synonymous_variant 1.0
rpsA 1834612 c.1071G>C synonymous_variant 0.77
rpsA 1834618 c.1077G>C synonymous_variant 0.7
rpsA 1834619 c.1078T>C synonymous_variant 1.0
rpsA 1834622 c.1081_1083delTCGinsAGC synonymous_variant 0.3
rpsA 1834627 c.1086C>G synonymous_variant 0.7
rpsA 1834633 c.1092A>G synonymous_variant 1.0
rpsA 1834636 c.1095C>A synonymous_variant 0.7
rpsA 1834637 p.Asn366Asp missense_variant 0.7
rpsA 1834657 c.1116G>A synonymous_variant 0.7
rpsA 1834663 c.1122C>T synonymous_variant 0.71
rpsA 1834666 c.1125G>A synonymous_variant 0.67
rpsA 1834667 p.Ala376Ser missense_variant 1.0
rpsA 1834688 c.1147_1149delAGTinsTCC synonymous_variant 0.6
rpsA 1834712 p.Ile391Leu missense_variant 1.0
rpsA 1834720 c.1179C>A synonymous_variant 1.0
kasA 2517941 c.-174C>G upstream_gene_variant 1.0
kasA 2517959 c.-156C>T upstream_gene_variant 1.0
kasA 2517962 c.-153C>G upstream_gene_variant 1.0
kasA 2517968 c.-147T>C upstream_gene_variant 1.0
kasA 2517974 c.-141T>C upstream_gene_variant 1.0
clpC1 4038713 c.1992T>C synonymous_variant 1.0
clpC1 4038744 p.Thr654Glu missense_variant 0.88
clpC1 4038746 c.1959C>T synonymous_variant 0.88
clpC1 4038755 c.1950G>C synonymous_variant 1.0
clpC1 4038764 c.1939_1941delCTCinsTTG synonymous_variant 0.78
clpC1 4038767 c.1938G>C synonymous_variant 1.0
clpC1 4038770 c.1935C>T synonymous_variant 1.0
clpC1 4038773 p.Asp644Glu missense_variant 1.0
clpC1 4038776 c.1929G>A synonymous_variant 0.78
clpC1 4038779 c.1924_1926delCTCinsTTG synonymous_variant 0.89
clpC1 4038782 c.1923G>A synonymous_variant 1.0
clpC1 4038793 c.1912C>T synonymous_variant 0.78
clpC1 4038795 p.Ser637Thr missense_variant 0.89
clpC1 4038811 p.Gln632Lys missense_variant 0.78
clpC1 4038812 c.1893T>C synonymous_variant 1.0
clpC1 4038821 c.1884G>A synonymous_variant 0.78
clpC1 4038836 c.1869G>T synonymous_variant 0.78
clpC1 4038845 c.1860G>C synonymous_variant 0.88
clpC1 4038878 c.1827A>G synonymous_variant 1.0
clpC1 4038890 c.1815G>A synonymous_variant 1.0
clpC1 4039991 c.714G>C synonymous_variant 1.0
clpC1 4040015 c.690G>C synonymous_variant 1.0
clpC1 4040021 c.684A>C synonymous_variant 1.0