EBG00000313325 - n.140T>C
Drug resistance types
127 Sensitive
7 RR-TB
20 HR-TB
21 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
75 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1.2 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 1 |
| lineage4.9 | 148 |
| lineage4.4.1.1.1 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage4.2.1 | 3 |
| lineage2.2.1;lineage4 | 2 |
| lineage4.3.3 | 3 |
| lineage4.8.1 | 3 |
| lineage2.2.1 | 13 |
| lineage4.3.2 | 1 |
| lineage2.2.1;lineage4.9 | 3 |
| lineage4.1.1.3 | 2 |
| lineage4.1.2.1 | 11 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage1.1.2 | 1 |
| La1.3 | 2 |
| lineage4 | 2 |
| lineage4.8 | 6 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage4.3.4.2.1 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.8.1 | 2 |
| lineage4.2.1.1 | 1 |
| lineage4.4.1.1 | 2 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage1.1.3.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage5.1.4 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage4.3.2.1 | 3 |
| lineage4.1;lineage4.9 | 2 |
| lineage4.5 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage2.2 | 3 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.2.1.1 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.7 | 2 |
| lineage4.4.2 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.9.1 | 2 |
| 1 | |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.2.2.2 | 1 |
| lineage3 | 1 |
| lineage4.1.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 254 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1175127 | Other | lineage2.2.1.2 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR4819357 | Sensitive | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR369158 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR3675210 | Sensitive | lineage4.9 | None | ERR11465604 | HR-TB | lineage4.8.1 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR867569 | Other | lineage4.9 | None | ERR4818272 | Other | lineage4.3.2 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR4821962 | Other | lineage4.1.1.3 | gb | SRR1175487 | Sensitive | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675245 | Other | lineage4.1.2.1 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR4821769 | Other | lineage4.1.2.1 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR4816571 | Sensitive | lineage1.1.2 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR349298 | Sensitive | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR4814905 | Sensitive | lineage4.8 | gb | SRR6046250 | Other | lineage4.9 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR867566 | Other | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR6359082 | Other | lineage4.9 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR4819175 | Other | lineage4.1.1.3 | gb | ERR4769497 | Other | La1;lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR3675502 | Sensitive | lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR4769453 | Other | La1.3 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR1180345 | Other | lineage4.9 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR369151 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR5535933 | Other | lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR7240476 | Other | La1.8.1 | None | ERR363490 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR3797065 | RR-TB | lineage4.9 | None | SRR28119843 | Sensitive | lineage4.9 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR16156804 | Sensitive | lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR4822138 | Other | lineage4.1.2.1 | None | SRR1172717 | Sensitive | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR6046046 | Other | lineage4.9 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR18909918 | Other | lineage2.2.1.1 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR2446566 | Other | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR2600612 | Sensitive | lineage4.8 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR4829360 | Sensitive | lineage4.7 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | SRR1175508 | Sensitive | lineage4.9 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | SRR6046802 | Other | lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR363502 | Other | lineage4.9 | None | SRR28119827 | Other | La3;lineage4.9 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | ERR363447 | Other | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR037504 | Other | lineage4.9.1 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR12708416 | Sensitive | None | ERR349296 | Sensitive | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR4821288 | Other | lineage4.7 | None | SRR1181368 | Other | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR4821718 | Sensitive | lineage4.2.2.2 | gb | ERR9786076 | Sensitive | lineage3 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | SRR1791725 | Other | La1.8.1 | None | SRR6832787 | Sensitive | lineage2.2.1 | None | ERR10762291 | MDR-TB | lineage2.2.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | SRR1181214 | Other | lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | SRR1181403 | Other | lineage4.9 | None | SRR7069473 | Other | lineage4.1.1.2 | None |
|---|
