TB-Profiler result

Run: ERR2513724
Summary

Run ID: ERR2513724

Sample name:

Date: 31-03-2023 19:52:07

Number of reads: 2473523

Percentage reads mapped: 77.71

Strain: lineage4.3.2.1

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.3 Euro-American (LAM) mainly-LAM None 1.0
lineage4.3.2 Euro-American (LAM) LAM3 None 1.0
lineage4.3.2.1 Euro-American (LAM) LAM3 RD761 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5520 p.Pro94Leu missense_variant 1.0
gyrA 6700 c.-602T>C upstream_gene_variant 0.11
gyrA 6706 c.-596G>A upstream_gene_variant 0.11
gyrA 6712 c.-590G>C upstream_gene_variant 0.11
gyrA 6724 c.-578G>A upstream_gene_variant 0.12
gyrA 6745 c.-557T>C upstream_gene_variant 0.12
gyrA 7033 c.-269G>C upstream_gene_variant 0.11
gyrB 7051 p.Glu604Asp missense_variant 0.17
gyrA 7054 c.-248C>T upstream_gene_variant 0.19
gyrA 7060 c.-242T>C upstream_gene_variant 0.19
gyrA 7066 c.-236G>C upstream_gene_variant 0.18
gyrA 7078 c.-224A>T upstream_gene_variant 0.21
gyrA 7084 c.-218A>G upstream_gene_variant 0.22
gyrA 7090 c.-212C>T upstream_gene_variant 0.21
gyrA 7093 c.-209T>C upstream_gene_variant 0.22
gyrA 7100 c.-202T>C upstream_gene_variant 0.24
gyrA 7123 c.-179C>G upstream_gene_variant 0.25
gyrA 7126 c.-176G>C upstream_gene_variant 0.26
gyrA 7129 c.-173T>G upstream_gene_variant 0.25
gyrA 7136 c.-166T>C upstream_gene_variant 0.26
gyrA 7141 c.-161T>C upstream_gene_variant 0.26
gyrA 7144 c.-158A>G upstream_gene_variant 0.26
gyrA 7150 c.-152G>A upstream_gene_variant 0.24
gyrA 7153 c.-149G>C upstream_gene_variant 0.25
gyrA 7168 c.-134C>G upstream_gene_variant 0.22
gyrA 7178 c.-124T>C upstream_gene_variant 0.16
gyrA 7186 c.-116C>G upstream_gene_variant 0.17
gyrA 7222 c.-80C>T upstream_gene_variant 0.94
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7442 c.141G>C synonymous_variant 0.11
gyrA 7457 c.156T>C synonymous_variant 0.11
gyrA 7490 c.189C>G synonymous_variant 0.12
gyrA 7496 c.195C>G synonymous_variant 0.12
gyrA 7499 c.198G>C synonymous_variant 0.12
gyrA 7523 c.222C>G synonymous_variant 0.12
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
rpoB 760382 c.576G>C synonymous_variant 0.12
rpoB 760400 c.594G>C synonymous_variant 0.14
rpoB 760406 c.600G>C synonymous_variant 0.14
rpoB 760407 p.Ser201Gly missense_variant 0.14
rpoB 760412 c.606C>T synonymous_variant 0.14
rpoB 760415 c.609C>T synonymous_variant 0.15
rpoB 760418 c.612G>A synonymous_variant 0.16
rpoB 760430 c.624T>C synonymous_variant 0.18
rpoB 760433 c.627C>T synonymous_variant 0.17
rpoB 760454 c.648C>G synonymous_variant 0.16
rpoB 760457 c.651C>T synonymous_variant 0.15
rpoB 760469 c.663C>T synonymous_variant 0.15
rpoB 760475 c.669A>G synonymous_variant 0.15
rpoB 760478 c.672C>T synonymous_variant 0.15
rpoB 760481 c.675G>T synonymous_variant 0.17
rpoB 760484 c.678A>G synonymous_variant 0.15
rpoB 760487 c.681G>C synonymous_variant 0.16
rpoB 760502 c.696C>G synonymous_variant 0.18
rpoB 760508 c.702G>A synonymous_variant 0.18
rpoB 760511 c.705G>C synonymous_variant 0.19
rpoB 760522 p.Ser239Asn missense_variant 0.23
rpoB 760532 c.726T>C synonymous_variant 0.17
rpoB 760541 c.735G>T synonymous_variant 0.15
rpoB 760547 c.741G>C synonymous_variant 0.16
rpoB 760561 c.757_758delCG frameshift_variant 0.13
rpoB 760571 c.765G>C synonymous_variant 0.14
rpoB 760588 p.Thr261Ile missense_variant 0.15
rpoB 760591 p.Val262Ala missense_variant 0.15
rpoB 760595 c.789C>T synonymous_variant 0.15
rpoB 760596 p.Thr264Pro missense_variant 0.15
rpoB 760607 c.801G>C synonymous_variant 0.16
rpoB 760611 c.805T>C synonymous_variant 0.15
rpoB 760646 c.840C>G synonymous_variant 0.12
rpoB 760655 c.849A>G synonymous_variant 0.12
rpoB 761006 c.1200C>T synonymous_variant 0.12
rpoB 761015 c.1209G>C synonymous_variant 0.15
rpoB 761027 c.1221A>C synonymous_variant 0.18
rpoB 761036 c.1230G>C synonymous_variant 0.16
rpoB 761037 c.1231T>C synonymous_variant 0.15
rpoB 761051 c.1245G>T synonymous_variant 0.18
rpoB 761054 c.1248G>C synonymous_variant 0.18
rpoB 761057 c.1251G>C synonymous_variant 0.18
rpoB 761060 c.1254C>G synonymous_variant 0.18
rpoB 761063 c.1257C>G synonymous_variant 0.18
rpoB 761084 c.1278C>A synonymous_variant 0.18
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.15
rpoB 761102 c.1296A>G synonymous_variant 0.15
rpoB 761132 c.1326G>T synonymous_variant 0.2
rpoB 761133 c.1327T>C synonymous_variant 0.2
rpoB 761147 c.1341C>T synonymous_variant 0.24
rpoB 761150 c.1344A>T synonymous_variant 0.26
rpoB 761165 c.1359G>C synonymous_variant 0.3
rpoB 761171 c.1365C>T synonymous_variant 0.29
rpoB 761178 p.Ser458Thr missense_variant 0.27
rpoB 761186 p.Glu460Asp missense_variant 0.24
rpoB 761189 c.1383T>C synonymous_variant 0.25
rpoB 761195 c.1389G>C synonymous_variant 0.27
rpoB 761198 c.1392G>T synonymous_variant 0.27
rpoB 761219 c.1413G>C synonymous_variant 0.26
rpoB 761234 c.1428G>C synonymous_variant 0.28
rpoB 761249 c.1443A>G synonymous_variant 0.27
rpoB 761255 c.1449T>G synonymous_variant 0.21
rpoB 761258 c.1452G>A synonymous_variant 0.21
rpoB 761261 c.1455G>C synonymous_variant 0.21
rpoB 761264 c.1458C>G synonymous_variant 0.21
rpoB 761273 c.1467T>C synonymous_variant 0.19
rpoB 761282 c.1476C>T synonymous_variant 0.21
rpoB 761636 c.1830G>T synonymous_variant 0.13
rpoB 761645 c.1839C>G synonymous_variant 0.14
rpoB 761648 c.1842T>C synonymous_variant 0.14
rpoB 761675 c.1869G>T synonymous_variant 0.14
rpoB 761687 c.1881C>T synonymous_variant 0.14
rpoB 761690 c.1884G>C synonymous_variant 0.14
rpoB 761693 c.1887G>C synonymous_variant 0.14
rpoB 761727 p.Ser641Gly missense_variant 0.12
rpoB 761728 c.1923dupC frameshift_variant 0.12
rpoB 761750 c.1944G>C synonymous_variant 0.11
rpoB 761990 c.2184G>C synonymous_variant 0.12
rpoB 762008 c.2202C>T synonymous_variant 0.13
rpoB 762014 c.2208C>G synonymous_variant 0.12
rpoB 762047 c.2241G>A synonymous_variant 0.12
rpoB 762053 c.2247T>C synonymous_variant 0.12
rpoB 762083 c.2277T>C synonymous_variant 0.12
rpoB 762086 c.2280G>T synonymous_variant 0.13
rpoB 762101 c.2295C>G synonymous_variant 0.14
rpoB 762114 p.Ile770Val missense_variant 0.14
rpoB 762122 c.2316C>T synonymous_variant 0.14
rpoB 762131 c.2325C>G synonymous_variant 0.13
rpoB 762134 c.2328C>A synonymous_variant 0.12
rpoB 762137 c.2331C>T synonymous_variant 0.13
rpoB 762140 c.2334G>C synonymous_variant 0.13
rpoB 762143 c.2337T>C synonymous_variant 0.12
rpoB 762149 c.2343G>C synonymous_variant 0.13
rpoB 762158 c.2352G>C synonymous_variant 0.13
rpoB 762167 c.2361T>C synonymous_variant 0.13
rpoB 762176 c.2370T>C synonymous_variant 0.14
rpoB 762185 c.2379G>C synonymous_variant 0.14
rpoB 762194 c.2388G>C synonymous_variant 0.18
rpoB 762233 c.2427G>C synonymous_variant 0.22
rpoB 762236 c.2430G>C synonymous_variant 0.22
rpoB 762245 c.2439G>C synonymous_variant 0.2
rpoB 762284 c.2478G>T synonymous_variant 0.17
rpoB 762293 c.2487T>C synonymous_variant 0.16
rpoB 762296 c.2490G>C synonymous_variant 0.16
rpoB 762299 c.2493G>C synonymous_variant 0.16
rpoB 762879 p.Met1025Leu missense_variant 0.17
rpoC 762894 c.-476C>T upstream_gene_variant 0.16
rpoC 762899 c.-471G>C upstream_gene_variant 0.17
rpoC 762911 c.-459C>T upstream_gene_variant 0.17
rpoC 762917 c.-453C>G upstream_gene_variant 0.18
rpoC 762920 c.-450C>T upstream_gene_variant 0.17
rpoC 762923 c.-447C>G upstream_gene_variant 0.17
rpoC 762959 c.-411G>C upstream_gene_variant 0.16
rpoC 762962 c.-408C>T upstream_gene_variant 0.16
rpoC 762983 c.-387C>T upstream_gene_variant 0.17
rpoC 762989 c.-381G>A upstream_gene_variant 0.17
rpoC 762995 c.-375G>T upstream_gene_variant 0.16
rpoC 763031 c.-339T>G upstream_gene_variant 0.16
rpoC 763034 c.-336C>A upstream_gene_variant 0.15
rpoC 763040 c.-330C>G upstream_gene_variant 0.18
rpoC 763070 c.-300T>C upstream_gene_variant 0.2
rpoC 763076 c.-294C>A upstream_gene_variant 0.2
rpoC 763082 c.-288C>T upstream_gene_variant 0.19
rpoC 763088 c.-282C>G upstream_gene_variant 0.18
rpoC 763094 c.-276G>C upstream_gene_variant 0.17
rpoC 763115 c.-255T>C upstream_gene_variant 0.15
rpoC 763127 c.-243G>C upstream_gene_variant 0.14
rpoC 763136 c.-234C>T upstream_gene_variant 0.14
rpoC 763142 c.-228C>G upstream_gene_variant 0.13
rpoC 763468 c.99G>C synonymous_variant 0.11
rpoC 763492 c.123G>C synonymous_variant 0.12
rpoC 763528 c.159G>A synonymous_variant 0.12
rpoC 763546 c.177A>G synonymous_variant 0.13
rpoC 763570 c.201G>C synonymous_variant 0.14
rpoC 763594 c.225C>T synonymous_variant 0.17
rpoC 763618 c.249C>T synonymous_variant 0.14
rpoC 763633 c.264T>C synonymous_variant 0.15
rpoC 763660 c.291T>G synonymous_variant 0.16
rpoC 763666 c.297G>C synonymous_variant 0.16
rpoC 763669 c.300C>G synonymous_variant 0.17
rpoC 763675 c.306C>G synonymous_variant 0.16
rpoC 763699 c.330G>T synonymous_variant 0.15
rpoC 763702 c.333C>G synonymous_variant 0.14
rpoC 763708 c.339G>T synonymous_variant 0.14
rpoC 763711 c.342G>C synonymous_variant 0.13
rpoC 763714 c.345G>A synonymous_variant 0.13
rpoC 763717 c.348T>C synonymous_variant 0.14
rpoC 763723 c.354G>C synonymous_variant 0.13
rpoC 763732 c.363C>G synonymous_variant 0.14
rpoC 763765 c.396T>C synonymous_variant 0.12
rpoC 763768 c.399C>T synonymous_variant 0.12
rpoC 763774 c.405G>C synonymous_variant 0.11
rpoC 763781 p.Ser138Ala missense_variant 0.12
rpoC 764428 c.1059G>C synonymous_variant 0.13
rpoC 764431 c.1062G>C synonymous_variant 0.12
rpoC 764434 c.1065A>G synonymous_variant 0.12
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 0.12
rpoC 764458 c.1089G>C synonymous_variant 0.12
rpoC 764461 c.1092A>G synonymous_variant 0.12
rpoC 764506 c.1137C>T synonymous_variant 0.13
rpoC 764521 c.1152T>C synonymous_variant 0.18
rpoC 764527 c.1158C>T synonymous_variant 0.17
rpoC 764530 c.1161C>T synonymous_variant 0.18
rpoC 764533 c.1164C>A synonymous_variant 0.18
rpoC 764536 c.1167G>T synonymous_variant 0.16
rpoC 764539 c.1170C>G synonymous_variant 0.19
rpoC 764548 c.1179G>A synonymous_variant 0.18
rpoC 764554 c.1185C>T synonymous_variant 0.18
rpoC 764566 c.1197C>G synonymous_variant 0.14
rpoC 764575 c.1206T>G synonymous_variant 0.16
rpoC 764578 c.1209C>G synonymous_variant 0.16
rpoC 764593 c.1224C>T synonymous_variant 0.2
rpoC 764602 c.1233C>T synonymous_variant 0.17
rpoC 764611 c.1242G>C synonymous_variant 0.18
rpoC 764626 c.1257C>T synonymous_variant 0.17
rpoC 764632 c.1263T>C synonymous_variant 0.15
rpoC 764635 c.1266C>T synonymous_variant 0.15
rpoC 764650 c.1281G>T synonymous_variant 0.15
rpoC 764713 c.1344G>T synonymous_variant 0.14
rpoC 764746 c.1377G>T synonymous_variant 0.21
rpoC 764752 c.1383G>C synonymous_variant 0.22
rpoC 764758 c.1389C>G synonymous_variant 0.23
rpoC 764764 c.1395T>C synonymous_variant 0.22
rpoC 764803 c.1434C>T synonymous_variant 0.23
rpoC 764810 p.Pro481Ala missense_variant 0.25
rpoC 764815 c.1446A>G synonymous_variant 0.25
rpoC 764827 c.1458G>C synonymous_variant 0.24
rpoC 764858 c.1489T>C synonymous_variant 0.22
rpoC 764869 c.1500C>T synonymous_variant 0.16
rpoC 764875 c.1506C>A synonymous_variant 0.14
rpoC 764878 c.1509C>G synonymous_variant 0.13
rpoC 764887 c.1518G>C synonymous_variant 0.13
rpoC 764888 c.1519T>C synonymous_variant 0.12
rpoC 764995 c.1626C>G synonymous_variant 0.94
rpoC 765886 c.2517C>G synonymous_variant 0.12
rpoC 765907 c.2538G>T synonymous_variant 0.14
rpoC 765928 c.2559C>G synonymous_variant 0.15
rpoC 765937 c.2568T>C synonymous_variant 0.16
rpoC 765940 c.2571A>T synonymous_variant 0.16
rpoC 765946 c.2577C>T synonymous_variant 0.15
rpoC 765947 c.2578T>C synonymous_variant 0.15
rpoC 765962 c.2593_2595delTTGinsCTT synonymous_variant 0.15
rpoC 765973 c.2604C>T synonymous_variant 0.14
rpoC 765979 c.2610C>G synonymous_variant 0.12
rpoC 765982 c.2613C>T synonymous_variant 0.12
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
atpE 1461101 c.57T>C synonymous_variant 0.12
atpE 1461107 c.63C>G synonymous_variant 0.12
atpE 1461113 c.69C>T synonymous_variant 0.14
atpE 1461132 p.Val30Ile missense_variant 0.16
atpE 1461149 c.105T>G synonymous_variant 0.15
atpE 1461155 c.111C>G synonymous_variant 0.15
atpE 1461161 c.117C>G synonymous_variant 0.15
atpE 1461167 c.123G>T synonymous_variant 0.13
atpE 1461170 c.126A>G synonymous_variant 0.12
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471922 n.78delT non_coding_transcript_exon_variant 0.14
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.14
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.13
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.13
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 0.21
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.2
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.19
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.48
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.53
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.5
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.4
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.15
rrs 1472337 n.492C>G non_coding_transcript_exon_variant 1.0
rrs 1472337 n.492C>T non_coding_transcript_exon_variant 1.0
rrs 1472380 n.535G>C non_coding_transcript_exon_variant 0.4
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.48
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.52
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.65
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.62
rrs 1472734 n.889C>T non_coding_transcript_exon_variant 0.66
rrs 1472741 n.896G>A non_coding_transcript_exon_variant 0.66
rrs 1472846 n.1001C>T non_coding_transcript_exon_variant 0.61
rrs 1472847 n.1002G>A non_coding_transcript_exon_variant 0.61
rrs 1472848 n.1003T>C non_coding_transcript_exon_variant 0.59
rrs 1472860 n.1015C>T non_coding_transcript_exon_variant 0.56
rrs 1472861 n.1016G>A non_coding_transcript_exon_variant 0.54
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.63
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.58
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.55
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.55
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.55
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.65
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.61
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.62
rrs 1473082 n.1237G>A non_coding_transcript_exon_variant 0.48
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.58
rrs 1473099 n.1254T>A non_coding_transcript_exon_variant 0.57
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.57
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.57
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.57
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.55
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.57
rrs 1473129 n.1284C>T non_coding_transcript_exon_variant 0.55
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.53
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.57
rrs 1473288 n.1443C>T non_coding_transcript_exon_variant 0.35
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.35
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 0.34
rrl 1473676 n.19G>A non_coding_transcript_exon_variant 0.16
rrl 1473684 n.27G>A non_coding_transcript_exon_variant 0.18
rrl 1473699 n.43delG non_coding_transcript_exon_variant 0.18
rrl 1473707 n.50T>A non_coding_transcript_exon_variant 0.17
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.23
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.29
rrl 1473746 n.89T>C non_coding_transcript_exon_variant 0.27
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.28
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.29
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.29
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.4
rrl 1473812 n.155G>A non_coding_transcript_exon_variant 0.44
rrl 1473814 n.157A>T non_coding_transcript_exon_variant 0.41
rrl 1473815 n.158T>G non_coding_transcript_exon_variant 0.41
rrl 1473829 n.172G>C non_coding_transcript_exon_variant 0.44
rrl 1473831 n.174G>T non_coding_transcript_exon_variant 0.42
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.42
rrl 1473839 n.182G>A non_coding_transcript_exon_variant 0.45
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.34
rrl 1473887 n.230T>C non_coding_transcript_exon_variant 0.38
rrl 1473888 n.231T>C non_coding_transcript_exon_variant 0.38
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.45
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.45
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.5
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.38
rrl 1473924 n.267_268insT non_coding_transcript_exon_variant 0.38
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.45
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.33
rrl 1473945 n.288T>A non_coding_transcript_exon_variant 0.33
rrl 1473946 n.289A>T non_coding_transcript_exon_variant 0.33
rrl 1473950 n.293G>T non_coding_transcript_exon_variant 0.36
rrl 1474030 n.373G>A non_coding_transcript_exon_variant 0.25
rrl 1474044 n.387C>T non_coding_transcript_exon_variant 0.25
rrl 1474051 n.394T>C non_coding_transcript_exon_variant 0.27
rrl 1474054 n.397T>C non_coding_transcript_exon_variant 0.27
rrl 1474056 n.399T>C non_coding_transcript_exon_variant 0.27
rrl 1474061 n.404T>C non_coding_transcript_exon_variant 0.27
rrl 1474074 n.417C>T non_coding_transcript_exon_variant 0.27
rrl 1474089 n.432C>T non_coding_transcript_exon_variant 0.29
rrl 1474093 n.436G>A non_coding_transcript_exon_variant 0.29
rrl 1474100 n.443C>T non_coding_transcript_exon_variant 0.29
rrl 1474103 n.446A>C non_coding_transcript_exon_variant 0.29
rrl 1474107 n.449_450insCT non_coding_transcript_exon_variant 0.18
rrl 1474109 n.453_454delAT non_coding_transcript_exon_variant 0.2
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 0.5
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.47
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.38
rrl 1474156 n.499G>A non_coding_transcript_exon_variant 0.12
rrl 1474181 n.524_525insT non_coding_transcript_exon_variant 0.5
rrl 1474184 n.527C>A non_coding_transcript_exon_variant 0.5
rrl 1474185 n.529delA non_coding_transcript_exon_variant 0.53
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.75
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 0.68
rrl 1474282 n.625G>A non_coding_transcript_exon_variant 0.8
rrl 1474292 n.636_649delTCCTCTCCGGAGGA non_coding_transcript_exon_variant 0.8
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.75
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.75
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.8
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.8
rrl 1474376 n.719T>A non_coding_transcript_exon_variant 0.82
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.8
rrl 1474413 n.756A>C non_coding_transcript_exon_variant 0.75
rrl 1474415 n.759_781delCACACGCGCATACGCGCGTGTGA non_coding_transcript_exon_variant 0.75
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 1.0
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 1.0
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 1.0
rrl 1474507 n.850G>C non_coding_transcript_exon_variant 1.0
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.56
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.42
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.36
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.36
rrl 1474638 n.981C>A non_coding_transcript_exon_variant 0.36
rrl 1474639 n.982G>T non_coding_transcript_exon_variant 0.36
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.36
rrl 1474717 n.1060A>G non_coding_transcript_exon_variant 0.8
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.8
rrl 1474743 n.1086T>G non_coding_transcript_exon_variant 0.75
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.75
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.8
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.77
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.75
rrl 1475129 n.1472G>A non_coding_transcript_exon_variant 0.5
rrl 1475202 n.1545G>C non_coding_transcript_exon_variant 0.4
rrl 1475209 n.1552G>A non_coding_transcript_exon_variant 0.4
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.4
rrl 1475220 n.1563G>T non_coding_transcript_exon_variant 0.4
rrl 1475406 n.1749T>G non_coding_transcript_exon_variant 0.43
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.6
rrl 1475443 n.1786G>A non_coding_transcript_exon_variant 0.67
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.69
rrl 1475475 n.1818C>T non_coding_transcript_exon_variant 0.82
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.82
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.82
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.79
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.69
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.65
rrl 1475573 n.1916G>A non_coding_transcript_exon_variant 0.38
rrl 1475760 n.2105_2106delGC non_coding_transcript_exon_variant 0.46
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 0.46
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 0.46
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.44
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.42
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.42
rrl 1475989 n.2332T>C non_coding_transcript_exon_variant 0.44
rrl 1475993 n.2336C>T non_coding_transcript_exon_variant 0.42
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.42
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.15
rrl 1476085 n.2428G>A non_coding_transcript_exon_variant 0.2
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.2
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.23
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.21
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.21
rrl 1476105 n.2448G>A non_coding_transcript_exon_variant 0.21
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 0.21
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.23
rrl 1476114 n.2457T>C non_coding_transcript_exon_variant 0.21
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.21
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.39
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.63
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.44
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.44
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.44
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.44
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.53
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.52
rrl 1476295 n.2638C>T non_coding_transcript_exon_variant 0.46
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.44
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 0.46
rrl 1476311 n.2654G>A non_coding_transcript_exon_variant 0.48
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.33
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.26
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.28
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.27
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.23
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.2
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.18
rrl 1476665 n.3008T>A non_coding_transcript_exon_variant 0.12
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 0.12
rrl 1476674 n.3017T>C non_coding_transcript_exon_variant 0.12
rpsA 1833709 c.168C>T synonymous_variant 0.14
rpsA 1833724 c.183C>T synonymous_variant 0.15
rpsA 1833727 c.186G>C synonymous_variant 0.15
rpsA 1833733 c.192C>G synonymous_variant 0.16
rpsA 1833734 p.Ala65Ser missense_variant 0.16
rpsA 1833748 c.207C>G synonymous_variant 0.18
rpsA 1833751 c.210C>T synonymous_variant 0.17
rpsA 1833760 c.219C>T synonymous_variant 0.15
rpsA 1833787 c.246C>G synonymous_variant 0.18
rpsA 1833790 c.249T>C synonymous_variant 0.2
rpsA 1833802 c.261A>G synonymous_variant 0.21
rpsA 1833811 c.270G>C synonymous_variant 0.23
rpsA 1833829 c.288A>G synonymous_variant 0.22
rpsA 1833832 c.291G>A synonymous_variant 0.23
rpsA 1833838 c.297G>T synonymous_variant 0.22
rpsA 1833841 c.300C>G synonymous_variant 0.23
rpsA 1833847 c.306C>G synonymous_variant 0.22
rpsA 1833856 c.315A>G synonymous_variant 0.22
rpsA 1833862 c.321G>T synonymous_variant 0.23
rpsA 1833874 c.333T>G synonymous_variant 0.26
rpsA 1833886 c.345C>G synonymous_variant 0.27
rpsA 1833892 c.351G>A synonymous_variant 0.28
rpsA 1833894 p.Ala118Glu missense_variant 0.28
rpsA 1833928 c.387G>C synonymous_variant 0.24
rpsA 1833949 c.408T>C synonymous_variant 0.19
rpsA 1833970 c.429G>C synonymous_variant 0.17
rpsA 1833979 c.438T>C synonymous_variant 0.15
rpsA 1833991 c.450C>G synonymous_variant 0.17
rpsA 1834000 c.459G>C synonymous_variant 0.19
rpsA 1834009 c.468C>T synonymous_variant 0.18
rpsA 1834012 c.471G>T synonymous_variant 0.18
rpsA 1834015 c.474G>C synonymous_variant 0.19
rpsA 1834021 c.480C>T synonymous_variant 0.18
rpsA 1834030 c.489C>G synonymous_variant 0.17
rpsA 1834228 c.687C>A synonymous_variant 0.14
rpsA 1834252 c.711C>G synonymous_variant 0.13
rpsA 1834261 c.720A>G synonymous_variant 0.14
rpsA 1834264 c.723G>C synonymous_variant 0.12
rpsA 1834297 c.756C>T synonymous_variant 0.15
rpsA 1834303 c.762T>G synonymous_variant 0.15
rpsA 1834306 c.765T>C synonymous_variant 0.15
rpsA 1834396 c.855G>T synonymous_variant 0.15
rpsA 1834405 c.864C>T synonymous_variant 0.12
rpsA 1834411 c.870T>C synonymous_variant 0.12
rpsA 1834423 c.882G>C synonymous_variant 0.11
rpsA 1834435 c.894G>C synonymous_variant 0.12
rpsA 1834456 c.915T>G synonymous_variant 0.12
rpsA 1834468 c.927A>G synonymous_variant 0.11
rpsA 1834480 c.939C>G synonymous_variant 0.12
rpsA 1834489 c.948T>C synonymous_variant 0.13
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2155722 c.390G>C synonymous_variant 0.12
katG 2155741 p.Gly124Ala missense_variant 0.12
katG 2155755 c.357C>T synonymous_variant 0.13
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
thyA 3073868 p.Thr202Ala missense_variant 0.93
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
rpoA 3877587 c.921A>G synonymous_variant 0.12
rpoA 3877596 c.912G>C synonymous_variant 0.14
rpoA 3877602 c.906C>T synonymous_variant 0.15
rpoA 3877629 c.879C>G synonymous_variant 0.15
rpoA 3877656 c.852T>G synonymous_variant 0.16
rpoA 3877662 c.846C>T synonymous_variant 0.16
rpoA 3877665 c.843C>G synonymous_variant 0.16
rpoA 3877668 c.840A>G synonymous_variant 0.14
rpoA 3877677 c.831G>C synonymous_variant 0.15
rpoA 3877680 c.828G>T synonymous_variant 0.14
rpoA 3877686 c.822A>G synonymous_variant 0.15
rpoA 3877692 c.816G>C synonymous_variant 0.13
rpoA 3877704 c.804G>T synonymous_variant 0.13
rpoA 3877818 c.690A>G synonymous_variant 0.12
rpoA 3877848 c.660C>T synonymous_variant 0.13
rpoA 3877856 c.652T>C synonymous_variant 0.16
rpoA 3877860 c.648C>T synonymous_variant 0.15
rpoA 3877875 c.633T>C synonymous_variant 0.15
rpoA 3877881 c.627G>C synonymous_variant 0.15
rpoA 3877887 c.621G>C synonymous_variant 0.15
rpoA 3877893 c.615C>T synonymous_variant 0.14
rpoA 3877900 p.Ser203Thr missense_variant 0.13
rpoA 3877905 c.603A>G synonymous_variant 0.13
rpoA 3877908 c.600T>C synonymous_variant 0.13
rpoA 3877920 c.588G>C synonymous_variant 0.13
rpoA 3877923 c.585C>T synonymous_variant 0.13
rpoA 3877929 p.Ile193Val missense_variant 0.12
rpoA 3877962 c.546G>T synonymous_variant 0.14
rpoA 3877974 c.534G>C synonymous_variant 0.13
rpoA 3878160 c.348C>G synonymous_variant 0.12
rpoA 3878169 c.339G>C synonymous_variant 0.12
rpoA 3878259 c.249G>C synonymous_variant 0.17
rpoA 3878271 c.237T>C synonymous_variant 0.14
rpoA 3878274 c.234G>C synonymous_variant 0.13
rpoA 3878283 p.Glu75Asp missense_variant 0.11
rpoA 3878298 c.210A>G synonymous_variant 0.12
clpC1 4038287 c.2418C>T synonymous_variant 1.0
clpC1 4039064 c.1641C>T synonymous_variant 0.14
clpC1 4039070 c.1635G>C synonymous_variant 0.15
clpC1 4039077 p.Lys543Arg missense_variant 0.15
clpC1 4039079 c.1626C>G synonymous_variant 0.15
clpC1 4039082 c.1623C>T synonymous_variant 0.14
clpC1 4039085 c.1620A>G synonymous_variant 0.16
clpC1 4039091 c.1614G>T synonymous_variant 0.17
clpC1 4039097 c.1608G>T synonymous_variant 0.17
clpC1 4039100 c.1605C>G synonymous_variant 0.16
clpC1 4039106 c.1599G>C synonymous_variant 0.18
clpC1 4039112 c.1593C>G synonymous_variant 0.18
clpC1 4039118 c.1587C>G synonymous_variant 0.17
clpC1 4039121 c.1584T>C synonymous_variant 0.17
clpC1 4039136 c.1569C>T synonymous_variant 0.13
clpC1 4039265 c.1440C>T synonymous_variant 0.13
clpC1 4039274 c.1431G>C synonymous_variant 0.12
clpC1 4039277 c.1428C>G synonymous_variant 0.12
clpC1 4039280 c.1425G>T synonymous_variant 0.12
clpC1 4039286 c.1419T>G synonymous_variant 0.12
clpC1 4039292 c.1413C>T synonymous_variant 0.14
clpC1 4039316 p.Glu463Asp missense_variant 0.11
clpC1 4039319 c.1386T>A synonymous_variant 0.12
clpC1 4039322 c.1383T>G synonymous_variant 0.11
clpC1 4039328 c.1377A>C synonymous_variant 0.11
clpC1 4039339 p.Thr456Pro missense_variant 0.11
clpC1 4039346 p.Arg453Ser missense_variant 0.11
clpC1 4039397 c.1308A>G synonymous_variant 0.12
clpC1 4039409 c.1296T>C synonymous_variant 0.12
clpC1 4039412 c.1293T>G synonymous_variant 0.12
clpC1 4039430 c.1275T>C synonymous_variant 0.12
clpC1 4039442 c.1263A>G synonymous_variant 0.13
clpC1 4039451 c.1254G>A synonymous_variant 0.13
clpC1 4039454 c.1251A>T synonymous_variant 0.12
clpC1 4039457 c.1248C>T synonymous_variant 0.12
clpC1 4039463 c.1242C>G synonymous_variant 0.13
clpC1 4039466 c.1239T>C synonymous_variant 0.14
clpC1 4039469 c.1236T>C synonymous_variant 0.17
clpC1 4039472 c.1233G>C synonymous_variant 0.17
clpC1 4039478 c.1227G>C synonymous_variant 0.16
clpC1 4039481 c.1224T>C synonymous_variant 0.2
clpC1 4039487 c.1218G>C synonymous_variant 0.16
clpC1 4039517 c.1188C>G synonymous_variant 0.19
clpC1 4039522 c.1183C>T synonymous_variant 0.18
clpC1 4039541 c.1164C>G synonymous_variant 0.19
clpC1 4039552 c.1153C>T synonymous_variant 0.12
clpC1 4039553 c.1152C>T synonymous_variant 0.12
clpC1 4039556 c.1149G>C synonymous_variant 0.13
clpC1 4039559 c.1146C>G synonymous_variant 0.12
clpC1 4039562 c.1143C>G synonymous_variant 0.13
clpC1 4039565 c.1140G>A synonymous_variant 0.13
clpC1 4039570 p.Met379Leu missense_variant 0.13
clpC1 4039574 p.Ala377Gly missense_variant 0.13
clpC1 4039586 c.1119G>C synonymous_variant 0.16
clpC1 4039589 c.1116G>C synonymous_variant 0.16
clpC1 4039610 c.1095G>C synonymous_variant 0.23
clpC1 4039616 c.1089G>C synonymous_variant 0.23
clpC1 4039622 c.1083C>T synonymous_variant 0.24
clpC1 4039649 c.1056G>T synonymous_variant 0.2
clpC1 4039652 c.1053G>C synonymous_variant 0.22
clpC1 4039685 c.1020C>T synonymous_variant 0.24
clpC1 4039694 c.1011G>C synonymous_variant 0.3
clpC1 4039724 c.981A>G synonymous_variant 0.33
clpC1 4039733 c.972G>C synonymous_variant 0.3
clpC1 4039739 c.966C>G synonymous_variant 0.28
clpC1 4039751 c.954A>G synonymous_variant 0.31
clpC1 4039757 c.948A>G synonymous_variant 0.29
clpC1 4039760 c.945T>C synonymous_variant 0.28
clpC1 4039766 c.939T>C synonymous_variant 0.28
clpC1 4039769 c.936C>G synonymous_variant 0.27
clpC1 4039775 c.930G>C synonymous_variant 0.28
clpC1 4039778 c.927A>G synonymous_variant 0.27
clpC1 4039787 c.918G>C synonymous_variant 0.25
clpC1 4039793 c.912C>G synonymous_variant 0.26
clpC1 4039805 c.900C>T synonymous_variant 0.27
clpC1 4039814 c.891C>G synonymous_variant 0.23
clpC1 4039817 c.888A>C synonymous_variant 0.22
clpC1 4039820 c.885T>G synonymous_variant 0.21
clpC1 4039831 c.874T>C synonymous_variant 0.19
clpC1 4039844 c.861C>T synonymous_variant 0.17
clpC1 4039850 c.855T>C synonymous_variant 0.21
clpC1 4039865 c.840T>C synonymous_variant 0.19
clpC1 4039904 c.801A>G synonymous_variant 0.18
clpC1 4039907 c.798G>A synonymous_variant 0.17
clpC1 4039931 c.774T>C synonymous_variant 0.13
clpC1 4039934 c.771G>C synonymous_variant 0.12
clpC1 4039946 c.759A>G synonymous_variant 0.11
clpC1 4040126 c.579C>T synonymous_variant 0.14
clpC1 4040132 c.573C>T synonymous_variant 0.14
embA 4242643 c.-590C>T upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4408156 p.Leu16Arg missense_variant 1.0