Rv3596c - c.1608G>T
Drug resistance types
61 Sensitive
5 RR-TB
64 HR-TB
16 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
76 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 13 |
| lineage4.9 | 126 |
| lineage4 | 5 |
| lineage2.2.1;lineage4 | 2 |
| lineage4.3.4.2 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.8 | 3 |
| lineage4.1.2.1 | 6 |
| lineage1.1.1 | 1 |
| lineage4.2.1 | 1 |
| lineage1.1.1.1 | 1 |
| lineage6.1.3 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.3.2.1 | 2 |
| La1.7;lineage4.9 | 8 |
| lineage4.4.1.1 | 1 |
| lineage4.1;lineage4.9 | 2 |
| La1.7;lineage4.2 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage3.1.3 | 2 |
| lineage4.8;lineage4.9 | 2 |
| La1.8.1 | 4 |
| lineage4.1.2 | 1 |
| lineage4.3.3 | 2 |
| lineage3 | 6 |
| La2;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 3 |
| lineage4.2.1.1 | 1 |
| lineage4.5 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage1.1.2 | 2 |
| M.canetti;lineage4.9 | 2 |
| La1.7 | 1 |
| La1.2.BCG | 1 |
| lineage6.1.2 | 1 |
| lineage4.1.1.3;lineage4.9 | 1 |
| lineage5.1.4 | 1 |
| lineage1.1.3.1 | 1 |
| 3 | |
| lineage2.2 | 2 |
| La2;lineage2.2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage2.2.1.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 225 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR1159378 | Other | lineage4.9 | None | SRR6045217 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR9786592 | Other | lineage4.3.4.2 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR6866410 | HR-TB | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR4819314 | HR-TB | lineage1.1.1 | None | ERR736848 | Other | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR4799025 | Other | lineage4.8 | None | SRR26399491 | Sensitive | lineage1.1.1.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR323066 | HR-TB | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR926160 | Other | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR400326 | Other | lineage4.9 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR1035122 | HR-TB | lineage4.9 | None | ERR323062 | HR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR4796254 | Other | lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR4798431 | Other | lineage4.1;lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | ERR6359082 | Other | lineage4.9 | None | ERR926155 | Other | lineage4.9 | None | ERR3283021 | MDR-TB | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR971389 | Other | lineage4.9 | None | ERR3797080 | Sensitive | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR9786597 | Other | lineage4.6.2.2 | None | ERR3797029 | Other | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SRR5341298 | Other | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | SRR11462861 | Other | La1.8.1 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR926165 | Other | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR926156 | Other | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR6046245 | Other | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR373946 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR11466072 | Sensitive | lineage4.3.4.2.1 | None | ERR400345 | Other | lineage4.9 | None | ERR4798823 | HR-TB | lineage4 | None | ERR6865502 | Sensitive | lineage4 | None | SRR7236177 | Other | La1.8.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR5341308 | HR-TB | lineage4.9 | None | ERR11050975 | Sensitive | lineage4.2.1.1 | None | ERR4811031 | Other | lineage4.5 | None | ERR4811030 | Other | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR6511621 | HR-TB | lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | SRR3675235 | HR-TB | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR323037 | Other | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | SRR5341453 | Other | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR4830353 | HR-TB | La1.7 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR19295647 | HR-TB | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR3675547 | Sensitive | lineage4.9 | None | SRR1158918 | Other | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR1915485 | Other | La1.2.BCG | None | ERR9787030 | RR-TB | lineage6.1.2 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | SRR28351342 | HR-TB | lineage2.2.1;lineage4 | None | ERR1063896 | HR-TB | None | SRR28351584 | HR-TB | lineage2.2.1 | None | SRR28351347 | Other | lineage3 | None | ERR6358979 | HR-TB | lineage4.9 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR779852 | HR-TB | lineage4.9 | None | SRR3675449 | RR-TB | M.canetti;lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR6866639 | HR-TB | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2513259 | Other | lineage3 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | ERR926157 | Other | lineage4.9 | None | SRR6045548 | Other | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR124636 | HR-TB | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR1180996 | Other | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR363498 | Other | lineage4.9 | None | SRR3675585 | HR-TB | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR926163 | Other | lineage4.9 | None | SRR26399255 | Sensitive | lineage2.2.1 | None | ERR751326 | Other | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR6045706 | Other | lineage4.9 | None | ERR3797081 | Sensitive | lineage4.9 | None | ERR3797073 | Other | La1.8.1 | None | ERR736831 | Other | lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR363445 | Other | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR926164 | Other | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR4797184 | HR-TB | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR363479 | Other | lineage4.9 | None | SRR28351442 | HR-TB | lineage3.1 | None | ERR4796577 | HR-TB | None | SRR12708416 | Sensitive | None | ERR6866807 | RR-TB | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR373945 | Other | lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR4798099 | HR-TB | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None |
|---|
