TB-Profiler result

Run: SRR11462861
Summary

Run ID: SRR11462861

Sample name:

Date: 02-04-2023 21:20:19

Number of reads: 730252

Percentage reads mapped: 48.68

Strain: La1.8.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
La1 M.bovis None None 1.0
La1.8 M.bovis None None 1.0
La1.8.1 M.bovis None None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
pncA 2289073 p.His57Asp missense_variant 1.0 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5752 c.513G>A synonymous_variant 1.0
gyrA 6406 c.-896C>T upstream_gene_variant 1.0
gyrB 6446 p.Ala403Ser missense_variant 1.0
gyrA 7283 c.-19G>T upstream_gene_variant 0.14
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7584 p.Ser95Ala missense_variant 0.17
gyrA 7607 c.306C>G synonymous_variant 0.14
gyrA 7619 c.318C>G synonymous_variant 0.19
gyrA 7629 p.Val110Ile missense_variant 0.19
gyrA 7658 c.357A>G synonymous_variant 0.19
gyrA 7661 c.360C>T synonymous_variant 0.16
gyrA 8285 c.984C>T synonymous_variant 0.98
gyrA 8501 c.1200G>C synonymous_variant 0.13
gyrA 8714 p.Lys471Asn missense_variant 0.13
gyrA 8897 c.1596T>C synonymous_variant 0.16
gyrA 8903 c.1602T>C synonymous_variant 0.16
gyrA 8915 c.1614A>G synonymous_variant 0.17
gyrA 8933 c.1632G>C synonymous_variant 0.17
gyrA 8934 p.Gln545Lys missense_variant 0.17
gyrA 8939 c.1638T>C synonymous_variant 0.16
gyrA 8942 c.1641G>C synonymous_variant 0.16
gyrA 8944 p.Gly548Asp missense_variant 0.16
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.15
gyrA 8990 c.1689C>G synonymous_variant 0.2
gyrA 8996 c.1695T>C synonymous_variant 0.18
gyrA 8998 p.Leu566Trp missense_variant 0.18
gyrA 9018 p.Gln573Lys missense_variant 0.19
gyrA 9023 c.1722A>C synonymous_variant 0.17
gyrA 9026 c.1725G>C synonymous_variant 0.14
gyrA 9029 c.1728T>C synonymous_variant 0.14
gyrA 9032 c.1731T>C synonymous_variant 0.14
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9217 p.Asp639Ala missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 576751 p.Lys468Asn missense_variant 0.25
rpoB 760140 p.Pro112Ser missense_variant 0.12
rpoB 760148 p.Asp114Glu missense_variant 0.15
rpoB 760157 c.351A>G synonymous_variant 0.19
rpoB 760181 c.375T>C synonymous_variant 0.19
rpoB 760184 c.378A>G synonymous_variant 0.21
rpoB 760196 c.390C>G synonymous_variant 0.21
rpoB 760223 c.417T>C synonymous_variant 0.2
rpoB 760233 c.427_429delAGTinsTCG synonymous_variant 0.21
rpoB 760241 c.435G>C synonymous_variant 0.21
rpoB 760244 c.438G>C synonymous_variant 0.19
rpoB 760256 c.450C>T synonymous_variant 0.21
rpoB 760357 p.Thr184Asn missense_variant 0.15
rpoB 760361 c.555T>C synonymous_variant 0.15
rpoB 760370 c.564C>G synonymous_variant 0.14
rpoB 760376 p.Asp190Glu missense_variant 0.18
rpoB 760380 p.Thr192Pro missense_variant 0.18
rpoB 760400 c.594G>C synonymous_variant 0.16
rpoB 760407 p.Ser201Ala missense_variant 0.15
rpoB 760430 c.624T>C synonymous_variant 0.14
rpoB 760436 c.630C>G synonymous_variant 0.14
rpoB 760460 c.654G>C synonymous_variant 0.21
rpoB 760475 c.669A>G synonymous_variant 0.22
rpoB 760481 c.675G>C synonymous_variant 0.22
rpoB 760484 c.678A>G synonymous_variant 0.21
rpoB 760487 c.681G>C synonymous_variant 0.23
rpoB 760508 c.702G>C synonymous_variant 0.3
rpoB 760511 c.705G>C synonymous_variant 0.3
rpoB 760514 c.708C>G synonymous_variant 0.3
rpoB 760532 c.726T>C synonymous_variant 0.33
rpoB 760533 p.Val243Leu missense_variant 0.33
rpoB 760541 c.735G>C synonymous_variant 0.31
rpoB 760547 c.741G>C synonymous_variant 0.33
rpoB 760553 c.747C>G synonymous_variant 0.35
rpoB 760565 c.759A>C synonymous_variant 0.31
rpoB 760568 c.762G>C synonymous_variant 0.31
rpoB 760571 c.765G>C synonymous_variant 0.31
rpoB 760589 c.783C>G synonymous_variant 0.26
rpoB 760591 p.Val262Ala missense_variant 0.26
rpoB 760611 c.805_807delTTGinsCTC synonymous_variant 0.25
rpoB 760634 c.828T>C synonymous_variant 0.18
rpoB 760646 c.840C>G synonymous_variant 0.15
rpoB 760649 c.843G>C synonymous_variant 0.15
rpoB 760652 c.846C>G synonymous_variant 0.15
rpoB 760655 c.849A>G synonymous_variant 0.16
rpoB 760661 c.855A>G synonymous_variant 0.19
rpoB 760670 c.864G>C synonymous_variant 0.19
rpoB 760674 c.868T>C synonymous_variant 0.22
rpoB 760679 c.873A>G synonymous_variant 0.18
rpoB 760683 c.877T>C synonymous_variant 0.19
rpoB 760946 c.1140A>G synonymous_variant 0.13
rpoB 760953 p.Ile383Leu missense_variant 0.14
rpoB 760958 c.1152G>C synonymous_variant 0.14
rpoB 760961 c.1155C>G synonymous_variant 0.14
rpoB 760965 p.Met387Leu missense_variant 0.14
rpoB 760970 c.1164G>C synonymous_variant 0.15
rpoB 760973 c.1167G>C synonymous_variant 0.15
rpoB 760982 c.1176G>C synonymous_variant 0.17
rpoB 760985 c.1179G>C synonymous_variant 0.18
rpoB 760988 c.1182C>G synonymous_variant 0.17
rpoB 760991 c.1185G>C synonymous_variant 0.17
rpoB 760997 c.1191G>C synonymous_variant 0.17
rpoB 761006 c.1200C>G synonymous_variant 0.21
rpoB 761015 c.1209G>C synonymous_variant 0.21
rpoB 761027 c.1221A>C synonymous_variant 0.25
rpoB 761036 c.1230G>C synonymous_variant 0.24
rpoB 761037 c.1231T>C synonymous_variant 0.23
rpoB 761051 c.1245G>C synonymous_variant 0.22
rpoB 761057 c.1251G>C synonymous_variant 0.23
rpoB 761058 p.Val418Ser missense_variant 0.23
rpoB 761063 c.1257C>G synonymous_variant 0.24
rpoB 761088 c.1282_1284delAGCinsTCG synonymous_variant 0.23
rpoB 761096 c.1290G>C synonymous_variant 0.22
rpoB 761097 c.1291_1293delAGCinsTCA synonymous_variant 0.23
rpoB 761102 c.1296A>G synonymous_variant 0.24
rpoB 761126 c.1320G>C synonymous_variant 0.25
rpoB 761132 c.1326G>C synonymous_variant 0.24
rpoB 761133 c.1327T>C synonymous_variant 0.24
rpoB 761147 c.1341C>T synonymous_variant 0.21
rpoB 761150 c.1344A>T synonymous_variant 0.21
rpoB 762053 c.2247T>C synonymous_variant 0.14
rpoB 762065 c.2259T>C synonymous_variant 0.19
rpoB 762074 c.2268C>G synonymous_variant 0.19
rpoB 762083 c.2277T>C synonymous_variant 0.19
rpoB 762086 c.2280G>C synonymous_variant 0.21
rpoB 762101 c.2295C>G synonymous_variant 0.26
rpoB 762114 p.Ile770Val missense_variant 0.24
rpoB 762131 c.2325C>G synonymous_variant 0.24
rpoB 762137 c.2331C>T synonymous_variant 0.23
rpoB 762140 c.2334G>C synonymous_variant 0.23
rpoB 762143 c.2337T>C synonymous_variant 0.23
rpoB 762149 c.2343G>C synonymous_variant 0.23
rpoB 762156 p.Val784Ile missense_variant 0.23
rpoB 762170 c.2364C>T synonymous_variant 0.27
rpoB 762185 c.2379G>C synonymous_variant 0.31
rpoB 762218 c.2412T>C synonymous_variant 0.3
rpoB 762233 c.2427G>C synonymous_variant 0.24
rpoB 762251 c.2445G>C synonymous_variant 0.22
rpoB 762254 c.2448T>C synonymous_variant 0.22
rpoB 762257 c.2451C>G synonymous_variant 0.22
rpoB 762275 c.2469C>G synonymous_variant 0.17
rpoB 762284 c.2478G>C synonymous_variant 0.17
rpoB 762905 p.Asp1033Glu missense_variant 0.17
rpoC 762929 c.-441G>T upstream_gene_variant 0.26
rpoC 762947 c.-423C>G upstream_gene_variant 0.23
rpoC 762962 c.-408C>T upstream_gene_variant 0.31
rpoC 762989 c.-381G>T upstream_gene_variant 0.32
rpoC 762995 c.-375G>C upstream_gene_variant 0.33
rpoC 763013 c.-357C>G upstream_gene_variant 0.31
rpoC 763022 c.-348C>G upstream_gene_variant 0.29
rpoC 763028 c.-342T>C upstream_gene_variant 0.29
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763053 c.-317_-315delTTGinsCTC upstream_gene_variant 0.27
rpoC 763067 c.-303C>G upstream_gene_variant 0.21
rpoC 763070 c.-300T>C upstream_gene_variant 0.22
rpoB 763074 p.Thr1090Val missense_variant 0.22
rpoC 763088 c.-282C>G upstream_gene_variant 0.23
rpoC 763115 c.-255T>C upstream_gene_variant 0.22
rpoC 763127 c.-243G>C upstream_gene_variant 0.19
rpoC 763133 c.-237G>C upstream_gene_variant 0.21
rpoC 763573 c.204G>C synonymous_variant 0.16
rpoC 763615 c.246G>C synonymous_variant 0.17
rpoC 763618 c.249C>T synonymous_variant 0.16
rpoC 763636 c.267T>C synonymous_variant 0.19
rpoC 763660 c.291T>G synonymous_variant 0.16
rpoC 763666 c.297G>T synonymous_variant 0.16
rpoC 763696 c.327T>C synonymous_variant 0.13
rpoC 763708 c.339G>C synonymous_variant 0.12
rpoC 764278 c.909A>G synonymous_variant 0.16
rpoC 764539 c.1170C>G synonymous_variant 0.13
rpoC 764560 c.1191T>C synonymous_variant 0.15
rpoC 764575 c.1206T>G synonymous_variant 0.2
rpoC 764611 c.1242G>C synonymous_variant 0.29
rpoC 764632 c.1263T>C synonymous_variant 0.3
rpoC 764635 c.1266C>G synonymous_variant 0.3
rpoC 764650 c.1281G>T synonymous_variant 0.26
rpoC 764656 c.1287C>G synonymous_variant 0.27
rpoC 764662 c.1293G>C synonymous_variant 0.27
rpoC 764665 c.1296C>G synonymous_variant 0.28
rpoC 764668 c.1299C>T synonymous_variant 0.27
rpoC 764695 c.1326T>C synonymous_variant 0.22
rpoC 764701 c.1332C>G synonymous_variant 0.26
rpoC 764716 c.1347G>C synonymous_variant 0.24
rpoC 764746 c.1377G>C synonymous_variant 0.23
rpoC 764755 c.1386C>T synonymous_variant 0.22
rpoC 764764 c.1395T>C synonymous_variant 0.23
rpoC 764780 c.1411_1413delAGCinsTCG synonymous_variant 0.21
rpoC 764797 c.1428G>C synonymous_variant 0.24
rpoC 764803 c.1434C>G synonymous_variant 0.23
rpoC 764812 c.1443C>G synonymous_variant 0.23
rpoC 764815 c.1446A>G synonymous_variant 0.22
rpoC 764824 c.1455T>C synonymous_variant 0.18
rpoC 764827 c.1458G>C synonymous_variant 0.2
rpoC 764854 c.1485G>C synonymous_variant 0.21
rpoC 764858 c.1489T>C synonymous_variant 0.17
rpoC 764863 c.1494G>C synonymous_variant 0.17
rpoC 764869 c.1500C>T synonymous_variant 0.17
rpoC 764872 c.1503A>T synonymous_variant 0.18
rpoC 764878 c.1509C>G synonymous_variant 0.17
rpoC 764887 c.1518G>T synonymous_variant 0.19
rpoC 764888 c.1519T>C synonymous_variant 0.21
rpoC 764893 c.1524T>C synonymous_variant 0.19
rpoC 764902 c.1533C>G synonymous_variant 0.19
rpoC 764911 c.1542A>G synonymous_variant 0.2
rpoC 764912 p.Met515Gln missense_variant 0.2
rpoC 764917 c.1548G>C synonymous_variant 0.2
rpoC 764923 c.1554A>G synonymous_variant 0.2
rpoC 764935 c.1566T>C synonymous_variant 0.25
rpoC 764948 c.1579_1581delTTGinsCTC synonymous_variant 0.24
rpoC 764953 c.1584G>C synonymous_variant 0.23
rpoC 764968 c.1599T>C synonymous_variant 0.23
rpoC 765034 c.1665T>C synonymous_variant 0.17
rpoC 765040 c.1671T>C synonymous_variant 0.17
rpoC 765041 c.1672T>C synonymous_variant 0.17
rpoC 765047 c.1678T>C synonymous_variant 0.19
rpoC 765055 c.1686C>G synonymous_variant 0.18
rpoC 765076 c.1707A>G synonymous_variant 0.2
rpoC 765079 c.1710T>G synonymous_variant 0.2
rpoC 765082 c.1713G>T synonymous_variant 0.2
rpoC 765085 c.1716T>C synonymous_variant 0.21
rpoC 765089 c.1720_1722delTTGinsCTC synonymous_variant 0.21
rpoC 765100 c.1731G>C synonymous_variant 0.21
rpoC 765103 c.1734G>T synonymous_variant 0.21
rpoC 765121 c.1752G>T synonymous_variant 0.14
rpoC 766846 c.3477C>T synonymous_variant 0.14
rpoC 766858 c.3489C>T synonymous_variant 0.14
rpoC 766861 c.3492G>C synonymous_variant 0.16
rpoC 766867 c.3498C>G synonymous_variant 0.16
rpoC 766882 c.3513C>T synonymous_variant 0.18
rpoC 766885 c.3516G>C synonymous_variant 0.17
rpoC 766894 c.3525T>C synonymous_variant 0.17
rpoC 766895 c.3526T>C synonymous_variant 0.17
rpoC 766900 c.3531T>C synonymous_variant 0.17
rpoC 766909 c.3540G>C synonymous_variant 0.17
rpoC 766911 p.Ile1181Thr missense_variant 0.17
rpoC 766915 p.Asp1182Glu missense_variant 0.18
rpoC 766918 c.3549C>T synonymous_variant 0.18
rpoC 766919 p.Ala1184Ser missense_variant 0.17
rpoC 766931 p.Ala1188Ser missense_variant 0.15
rpoC 766942 c.3573C>T synonymous_variant 0.15
rpoC 766945 c.3576A>C synonymous_variant 0.16
rpoC 766948 c.3579G>C synonymous_variant 0.16
rpoC 766963 c.3594T>C synonymous_variant 0.19
rpoC 766981 c.3612T>G synonymous_variant 0.2
rpoC 766990 c.3621G>C synonymous_variant 0.2
rpoC 767002 c.3633G>C synonymous_variant 0.21
rpoC 767008 c.3639G>C synonymous_variant 0.22
rpoC 767014 c.3645G>C synonymous_variant 0.22
rpoC 767017 c.3648C>G synonymous_variant 0.22
rpoC 767041 c.3672G>C synonymous_variant 0.16
rpoC 767044 c.3675G>C synonymous_variant 0.16
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781751 c.192G>C synonymous_variant 0.16
rpsL 781760 c.201T>C synonymous_variant 0.18
rpsL 781769 c.210G>A synonymous_variant 0.21
rpsL 781772 c.213C>T synonymous_variant 0.21
rpsL 781781 c.222G>T synonymous_variant 0.23
rpsL 781802 c.243G>C synonymous_variant 0.2
rpsL 781805 c.246G>C synonymous_variant 0.2
rpsL 781808 c.249C>T synonymous_variant 0.22
rpsL 781814 c.255C>T synonymous_variant 0.22
rpsL 781817 c.258G>T synonymous_variant 0.22
rpsL 781829 c.270G>C synonymous_variant 0.26
rpsL 781832 c.273T>G synonymous_variant 0.26
rpsL 781838 c.279G>T synonymous_variant 0.24
rpsL 781841 c.282C>T synonymous_variant 0.22
rpsL 781865 c.306G>C synonymous_variant 0.25
rpsL 781871 c.312G>C synonymous_variant 0.26
rpsL 781892 c.333A>G synonymous_variant 0.2
rpsL 781898 c.339A>G synonymous_variant 0.2
rpsL 781901 c.342C>G synonymous_variant 0.21
rpsL 781907 c.348T>C synonymous_variant 0.21
rpsL 781916 c.357T>G synonymous_variant 0.22
rplC 800612 c.-197A>G upstream_gene_variant 0.27
rplC 800618 c.-191T>G upstream_gene_variant 0.26
rplC 800633 c.-176T>C upstream_gene_variant 0.28
rplC 800645 c.-164C>T upstream_gene_variant 0.27
rplC 800648 c.-161A>G upstream_gene_variant 0.27
rplC 800654 c.-155T>C upstream_gene_variant 0.26
rplC 800672 c.-137G>C upstream_gene_variant 0.22
rplC 800690 c.-119C>T upstream_gene_variant 0.22
rplC 800693 c.-116A>G upstream_gene_variant 0.22
rplC 800703 c.-106T>C upstream_gene_variant 0.22
rplC 800715 c.-94_-92delATCinsCTG upstream_gene_variant 0.21
rplC 800720 c.-89T>C upstream_gene_variant 0.21
rplC 800723 c.-86C>G upstream_gene_variant 0.22
rplC 800735 c.-74C>G upstream_gene_variant 0.22
rplC 800738 c.-71T>C upstream_gene_variant 0.24
rplC 800762 c.-47T>G upstream_gene_variant 0.21
fbiC 1302899 c.-32A>G upstream_gene_variant 1.0
fbiC 1305494 c.2565_*55delGGCCTAGCCCCGGCGACGATGCCGGGTCGCGGGATGCGGCCCGTTGAGGAGCGGGGCAATCT frameshift_variant&stop_lost&splice_region_variant 0.15
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471918 n.73A>T non_coding_transcript_exon_variant 0.5
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.5
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.57
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 0.57
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.57
rrs 1471938 n.93T>A non_coding_transcript_exon_variant 0.57
rrs 1471972 n.127T>C non_coding_transcript_exon_variant 0.82
rrs 1471981 n.136C>T non_coding_transcript_exon_variant 0.94
rrs 1472023 n.178G>T non_coding_transcript_exon_variant 0.82
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.88
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.88
rrs 1472067 n.222G>A non_coding_transcript_exon_variant 0.88
rrs 1472068 n.223T>C non_coding_transcript_exon_variant 0.88
rrs 1472069 n.224G>A non_coding_transcript_exon_variant 0.88
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 1.0
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 1.0
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 1.0
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 1.0
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.91
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.86
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.9
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.86
rrs 1472287 n.442C>T non_coding_transcript_exon_variant 0.86
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.86
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.86
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.86
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.86
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.86
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.86
rrs 1472327 n.482G>A non_coding_transcript_exon_variant 0.86
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.86
rrs 1472396 n.551A>T non_coding_transcript_exon_variant 1.0
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 1.0
rrs 1472431 n.586G>A non_coding_transcript_exon_variant 1.0
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 1.0
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 1.0
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 1.0
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 1.0
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 1.0
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 1.0
rrs 1472451 n.606C>A non_coding_transcript_exon_variant 1.0
rrs 1472460 n.615T>C non_coding_transcript_exon_variant 1.0
rrs 1472461 n.616G>T non_coding_transcript_exon_variant 1.0
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 1.0
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 1.0
rrs 1472467 n.622G>C non_coding_transcript_exon_variant 1.0
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 1.0
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 1.0
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 1.0
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 1.0
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.93
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.93
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.72
rrs 1472837 n.992C>T non_coding_transcript_exon_variant 0.72
rrs 1472839 n.994C>G non_coding_transcript_exon_variant 0.72
rrs 1472843 n.998_999insT non_coding_transcript_exon_variant 0.72
rrs 1472857 n.1012A>T non_coding_transcript_exon_variant 0.76
rrs 1472858 n.1013G>C non_coding_transcript_exon_variant 0.76
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.76
rrs 1472861 n.1016G>T non_coding_transcript_exon_variant 0.76
rrs 1472864 n.1019C>G non_coding_transcript_exon_variant 0.76
rrs 1472872 n.1027G>C non_coding_transcript_exon_variant 0.68
rrs 1472874 n.1029C>T non_coding_transcript_exon_variant 0.72
rrs 1472876 n.1031G>C non_coding_transcript_exon_variant 0.72
rrs 1472878 n.1033G>A non_coding_transcript_exon_variant 0.72
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.72
rrs 1473081 n.1236C>G non_coding_transcript_exon_variant 0.82
rrs 1473082 n.1237G>C non_coding_transcript_exon_variant 0.82
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.84
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.82
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.77
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.77
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.8
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.78
rrs 1473129 n.1284C>G non_coding_transcript_exon_variant 0.77
rrs 1473130 n.1285G>C non_coding_transcript_exon_variant 0.77
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.82
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.78
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.59
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.45
rrl 1473679 n.22T>C non_coding_transcript_exon_variant 0.2
rrl 1473695 n.38A>G non_coding_transcript_exon_variant 0.22
rrl 1473696 n.39T>C non_coding_transcript_exon_variant 0.22
rrl 1473697 n.40C>A non_coding_transcript_exon_variant 0.22
rrl 1473698 n.41G>A non_coding_transcript_exon_variant 0.22
rrl 1473699 n.42A>G non_coding_transcript_exon_variant 0.22
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.62
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.62
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.62
rrl 1473793 n.136G>C non_coding_transcript_exon_variant 0.71
rrl 1473797 n.140G>C non_coding_transcript_exon_variant 0.71
rrl 1473802 n.145C>G non_coding_transcript_exon_variant 0.71
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.71
rrl 1473814 n.157A>C non_coding_transcript_exon_variant 0.83
rrl 1473815 n.158T>G non_coding_transcript_exon_variant 0.83
rrl 1473816 n.159C>T non_coding_transcript_exon_variant 0.83
rrl 1473844 n.187C>A non_coding_transcript_exon_variant 0.7
rrl 1473870 n.213G>T non_coding_transcript_exon_variant 0.62
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.7
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.7
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 0.7
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.67
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.67
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.67
rrl 1473922 n.265A>T non_coding_transcript_exon_variant 0.5
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.5
rrl 1473933 n.276_277insAT non_coding_transcript_exon_variant 0.5
rrl 1473936 n.281_282delGC non_coding_transcript_exon_variant 0.5
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.5
rrl 1473945 n.288T>A non_coding_transcript_exon_variant 0.5
rrl 1473946 n.289A>T non_coding_transcript_exon_variant 0.5
rrl 1473968 n.311C>T non_coding_transcript_exon_variant 0.5
rrl 1473971 n.314G>T non_coding_transcript_exon_variant 0.5
rrl 1474007 n.350A>G non_coding_transcript_exon_variant 0.67
rrl 1474127 n.470G>A non_coding_transcript_exon_variant 1.0
rrl 1474139 n.482C>T non_coding_transcript_exon_variant 1.0
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 1.0
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 1.0
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 1.0
rrl 1474180 n.523_524insA non_coding_transcript_exon_variant 1.0
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 1.0
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 1.0
rrl 1474202 n.545T>A non_coding_transcript_exon_variant 1.0
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 1.0
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 1.0
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 1.0
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 1.0
rrl 1474353 n.696A>C non_coding_transcript_exon_variant 1.0
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 1.0
rrl 1474355 n.698A>C non_coding_transcript_exon_variant 1.0
rrl 1474356 n.699T>G non_coding_transcript_exon_variant 1.0
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 1.0
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 1.0
rrl 1474373 n.717dupT non_coding_transcript_exon_variant 1.0
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 1.0
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 1.0
rrl 1474409 n.756_776delACCCACACGCGCATACGCGCG non_coding_transcript_exon_variant 1.0
rrl 1474435 n.778G>T non_coding_transcript_exon_variant 1.0
rrl 1474437 n.782_784delATA non_coding_transcript_exon_variant 1.0
rrl 1474444 n.787G>C non_coding_transcript_exon_variant 1.0
rrl 1474447 n.790G>C non_coding_transcript_exon_variant 1.0
rrl 1474448 n.791T>G non_coding_transcript_exon_variant 1.0
rrl 1474450 n.793T>G non_coding_transcript_exon_variant 1.0
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.83
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.83
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.83
rrl 1474498 n.841G>A non_coding_transcript_exon_variant 0.83
rrl 1474505 n.848C>T non_coding_transcript_exon_variant 0.83
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.83
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.83
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.83
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.89
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.79
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.79
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.79
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.79
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.79
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.79
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.8
rrl 1474674 n.1017A>C non_coding_transcript_exon_variant 0.86
rrl 1474675 n.1018C>A non_coding_transcript_exon_variant 0.86
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 0.86
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 0.88
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.92
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.96
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.96
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.96
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.94
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.93
rrl 1474822 n.1165G>C non_coding_transcript_exon_variant 0.93
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.93
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.93
rrl 1475433 n.1776A>C non_coding_transcript_exon_variant 1.0
rrl 1475443 n.1786G>C non_coding_transcript_exon_variant 1.0
rrl 1475444 n.1787G>A non_coding_transcript_exon_variant 1.0
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 1.0
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 1.0
rrl 1475479 n.1822C>A non_coding_transcript_exon_variant 0.67
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.67
rrl 1475482 n.1825A>T non_coding_transcript_exon_variant 0.67
rrl 1475483 n.1826C>G non_coding_transcript_exon_variant 0.67
rrl 1475485 n.1828C>T non_coding_transcript_exon_variant 0.67
rrl 1475486 n.1829A>G non_coding_transcript_exon_variant 0.67
rrl 1475487 n.1830C>T non_coding_transcript_exon_variant 0.67
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.86
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.86
rrl 1475536 n.1879C>A non_coding_transcript_exon_variant 0.86
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.86
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.86
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.86
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.83
rrl 1475601 n.1945_1950delGGAATA non_coding_transcript_exon_variant 0.83
rrl 1475609 n.1954_1955insCTGGT non_coding_transcript_exon_variant 0.83
rrl 1475614 n.1957A>T non_coding_transcript_exon_variant 0.83
rrl 1475615 n.1958C>G non_coding_transcript_exon_variant 0.83
rrl 1475617 n.1960C>T non_coding_transcript_exon_variant 0.83
rrl 1475619 n.1962C>T non_coding_transcript_exon_variant 0.83
rrl 1475622 n.1965G>A non_coding_transcript_exon_variant 0.83
rrl 1475627 n.1970G>C non_coding_transcript_exon_variant 0.83
rrl 1475633 n.1976G>T non_coding_transcript_exon_variant 0.83
rrl 1475636 n.1979A>G non_coding_transcript_exon_variant 0.83
rrl 1475638 n.1981C>G non_coding_transcript_exon_variant 0.83
rrl 1475639 n.1982C>G non_coding_transcript_exon_variant 0.83
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.85
rrl 1475655 n.1998T>A non_coding_transcript_exon_variant 0.89
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.9
rrl 1475688 n.2031G>A non_coding_transcript_exon_variant 0.94
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.94
rrl 1475713 n.2056C>T non_coding_transcript_exon_variant 0.95
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.9
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.93
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.97
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.95
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.95
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.95
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.89
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.81
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.8
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.81
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.78
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.76
rrl 1476032 n.2375C>G non_coding_transcript_exon_variant 0.76
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.76
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.76
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.76
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.76
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.76
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 0.76
rrl 1476047 n.2390G>C non_coding_transcript_exon_variant 0.76
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.76
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.71
rrl 1476087 n.2430C>T non_coding_transcript_exon_variant 0.71
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.71
rrl 1476091 n.2434_2435insC non_coding_transcript_exon_variant 0.71
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.71
rrl 1476103 n.2446C>A non_coding_transcript_exon_variant 0.68
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.68
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 0.69
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.7
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.72
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.82
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.89
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.9
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.9
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.92
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.92
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.92
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.93
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.93
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.92
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.9
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.9
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.9
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.84
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.84
rrl 1476300 n.2643G>A non_coding_transcript_exon_variant 0.86
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.9
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.89
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.78
rrl 1476529 n.2872A>T non_coding_transcript_exon_variant 0.78
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.77
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.77
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.66
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.66
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.68
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.67
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.64
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.64
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.64
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.64
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.62
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.61
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.61
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.61
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.47
rrl 1476665 n.3008T>G non_coding_transcript_exon_variant 0.4
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 0.38
rpsA 1833676 c.135A>G synonymous_variant 0.17
rpsA 1833694 c.153G>T synonymous_variant 0.16
rpsA 1833697 c.156C>G synonymous_variant 0.15
rpsA 1833709 c.168C>T synonymous_variant 0.18
rpsA 1833721 c.180A>G synonymous_variant 0.23
rpsA 1833727 c.186G>C synonymous_variant 0.23
rpsA 1833734 p.Ala65Ser missense_variant 0.24
rpsA 1833742 c.201A>G synonymous_variant 0.25
rpsA 1833746 c.205_206delTCinsAG synonymous_variant 0.21
rpsA 1833769 c.228C>G synonymous_variant 0.18
rpsA 1833770 p.Asn77Ser missense_variant 0.18
rpsA 1833781 c.240T>C synonymous_variant 0.19
rpsA 1833782 p.Ser81Asn missense_variant 0.19
rpsA 1833790 c.249T>C synonymous_variant 0.19
rpsA 1833793 c.252C>T synonymous_variant 0.19
rpsA 1833795 p.Glu85Ala missense_variant 0.19
rpsA 1833802 c.261A>G synonymous_variant 0.19
rpsA 1833805 c.264C>T synonymous_variant 0.18
rpsA 1833808 c.267G>C synonymous_variant 0.18
rpsA 1833811 c.270G>C synonymous_variant 0.18
rpsA 1833829 c.288A>G synonymous_variant 0.33
rpsA 1833832 c.291G>A synonymous_variant 0.32
rpsA 1833838 c.297G>C synonymous_variant 0.34
rpsA 1833841 c.300C>G synonymous_variant 0.33
rpsA 1833847 c.306C>G synonymous_variant 0.36
rpsA 1833856 c.315A>G synonymous_variant 0.37
rpsA 1833859 c.318C>T synonymous_variant 0.37
rpsA 1833874 c.333T>C synonymous_variant 0.38
rpsA 1833886 c.345C>G synonymous_variant 0.37
rpsA 1833894 p.Ala118Glu missense_variant 0.41
rpsA 1833928 c.387G>C synonymous_variant 0.44
rpsA 1833940 c.399C>G synonymous_variant 0.41
rpsA 1833952 c.411C>T synonymous_variant 0.38
rpsA 1833955 c.414G>C synonymous_variant 0.38
rpsA 1833961 c.420C>G synonymous_variant 0.37
rpsA 1833970 c.429G>C synonymous_variant 0.38
rpsA 1833973 c.432G>C synonymous_variant 0.37
rpsA 1833979 c.438T>C synonymous_variant 0.33
rpsA 1833985 c.444G>C synonymous_variant 0.34
rpsA 1833988 c.447C>G synonymous_variant 0.36
rpsA 1834000 c.459G>C synonymous_variant 0.37
rpsA 1834009 c.468C>T synonymous_variant 0.33
rpsA 1834012 c.471G>T synonymous_variant 0.34
rpsA 1834024 c.483G>C synonymous_variant 0.33
rpsA 1834030 c.489C>G synonymous_variant 0.33
rpsA 1834054 c.513C>G synonymous_variant 0.36
rpsA 1834069 c.528G>C synonymous_variant 0.28
rpsA 1834093 c.552G>C synonymous_variant 0.27
rpsA 1834099 c.558C>G synonymous_variant 0.26
rpsA 1834102 c.561T>C synonymous_variant 0.26
rpsA 1834105 c.564C>T synonymous_variant 0.24
rpsA 1834108 c.567C>A synonymous_variant 0.25
rpsA 1834114 c.573G>C synonymous_variant 0.31
rpsA 1834135 c.594G>C synonymous_variant 0.3
rpsA 1834151 p.Asn204His missense_variant 0.27
rpsA 1834154 p.Asn205Gln missense_variant 0.27
rpsA 1834157 c.616T>C synonymous_variant 0.27
rpsA 1834162 c.621A>G synonymous_variant 0.26
rpsA 1834165 c.624A>G synonymous_variant 0.26
rpsA 1834167 c.628_629delAC frameshift_variant 0.25
rpsA 1834172 c.631_632insGG frameshift_variant 0.28
rpsA 1834177 c.636A>C synonymous_variant 0.39
rpsA 1834183 c.642T>C synonymous_variant 0.48
rpsA 1834210 c.669C>T synonymous_variant 0.5
rpsA 1834213 c.672G>C synonymous_variant 0.5
rpsA 1834219 c.678C>G synonymous_variant 0.48
rpsA 1834222 c.681T>C synonymous_variant 0.47
rpsA 1834225 c.684C>G synonymous_variant 0.47
rpsA 1834231 c.690T>C synonymous_variant 0.5
rpsA 1834234 c.693G>C synonymous_variant 0.51
rpsA 1834240 c.699T>C synonymous_variant 0.55
rpsA 1834243 c.702G>C synonymous_variant 0.53
rpsA 1834249 c.708T>C synonymous_variant 0.61
rpsA 1834255 c.714C>G synonymous_variant 0.61
rpsA 1834261 c.720A>G synonymous_variant 0.57
rpsA 1834264 c.723G>C synonymous_variant 0.59
rpsA 1834279 c.738C>T synonymous_variant 0.57
rpsA 1834298 p.Gln253Thr missense_variant 0.53
rpsA 1834303 c.762T>G synonymous_variant 0.5
rpsA 1834306 c.765T>C synonymous_variant 0.5
rpsA 1834327 c.786G>C synonymous_variant 0.46
rpsA 1834340 p.Met267Leu missense_variant 0.44
rpsA 1834348 c.807T>C synonymous_variant 0.44
rpsA 1834354 c.813G>C synonymous_variant 0.43
rpsA 1834357 c.816T>C synonymous_variant 0.42
rpsA 1834361 c.820T>C synonymous_variant 0.4
rpsA 1834366 c.825A>G synonymous_variant 0.41
rpsA 1834378 c.837T>C synonymous_variant 0.42
rpsA 1834384 c.843A>G synonymous_variant 0.42
rpsA 1834387 c.846C>T synonymous_variant 0.39
rpsA 1834396 c.855G>T synonymous_variant 0.33
rpsA 1834399 p.His286Gln missense_variant 0.33
rpsA 1834408 c.867C>G synonymous_variant 0.34
rpsA 1834411 c.870T>C synonymous_variant 0.33
rpsA 1834417 c.876G>C synonymous_variant 0.34
rpsA 1834423 c.882G>C synonymous_variant 0.35
rpsA 1834435 c.894G>C synonymous_variant 0.36
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.36
rpsA 1834456 c.915T>C synonymous_variant 0.35
rpsA 1834465 c.924T>C synonymous_variant 0.35
rpsA 1834468 c.927A>G synonymous_variant 0.35
rpsA 1834489 c.948T>C synonymous_variant 0.4
rpsA 1834501 c.960G>C synonymous_variant 0.39
rpsA 1834504 c.963G>C synonymous_variant 0.37
rpsA 1834513 c.972C>G synonymous_variant 0.36
rpsA 1834528 c.987T>C synonymous_variant 0.38
rpsA 1834540 c.999G>C synonymous_variant 0.38
rpsA 1834543 c.1002C>G synonymous_variant 0.38
rpsA 1834546 c.1005T>C synonymous_variant 0.38
rpsA 1834552 c.1011G>C synonymous_variant 0.38
rpsA 1834555 c.1014T>C synonymous_variant 0.39
rpsA 1834556 p.Ala339Ser missense_variant 0.39
rpsA 1834570 c.1029C>T synonymous_variant 0.39
rpsA 1834600 c.1059G>C synonymous_variant 0.42
rpsA 1834606 c.1065C>T synonymous_variant 0.5
rpsA 1834612 c.1071G>T synonymous_variant 0.48
rpsA 1834619 c.1078T>C synonymous_variant 0.5
rpsA 1834622 c.1081_1083delTCGinsAGC synonymous_variant 0.5
rpsA 1834633 c.1092A>G synonymous_variant 0.55
rpsA 1834639 c.1098T>C synonymous_variant 0.55
rpsA 1834667 p.Ala376Ser missense_variant 0.38
rpsA 1834690 c.1149T>C synonymous_variant 0.35
rpsA 1834700 p.Gln387Asn missense_variant 0.35
rpsA 1834706 p.Asn389Glu missense_variant 0.32
rpsA 1834733 p.Ala398Pro missense_variant 0.2
rpsA 1834859 p.Ala440Thr missense_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102193 p.Arg284Trp missense_variant 1.0
ndh 2103173 c.-132delG upstream_gene_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155503 c.609C>T synonymous_variant 1.0
katG 2155743 c.369G>C synonymous_variant 0.16
katG 2155755 c.357C>T synonymous_variant 0.15
katG 2155787 p.Ala109Ser missense_variant 0.13
katG 2155796 p.Ala106Ser missense_variant 0.13
katG 2156025 c.87C>A synonymous_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168011 p.Ser868Arg missense_variant 1.0
PPE35 2168319 p.Thr765Ile missense_variant 1.0
PPE35 2168814 c.1798dupA frameshift_variant 1.0
PPE35 2169156 p.Thr486Met missense_variant 0.12
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517945 c.-170_-168delATCinsGTG upstream_gene_variant 0.14
kasA 2517950 c.-165C>G upstream_gene_variant 0.14
kasA 2518132 c.18C>T synonymous_variant 1.0
eis 2715125 p.Thr70Ala missense_variant 1.0
ald 3086728 c.-92C>T upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087084 c.266delA frameshift_variant 1.0
Rv3083 3448783 p.Val94Ile missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474427 p.Val141Ile missense_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
rpoA 3877613 p.Ile299Val missense_variant 0.13
rpoA 3877656 c.852T>C synonymous_variant 0.2
rpoA 3877659 c.849G>T synonymous_variant 0.2
rpoA 3877668 c.840A>G synonymous_variant 0.21
rpoA 3877677 c.831G>C synonymous_variant 0.24
rpoA 3877683 c.825G>C synonymous_variant 0.23
rpoA 3877686 c.822A>G synonymous_variant 0.24
rpoA 3877704 c.804G>T synonymous_variant 0.3
rpoA 3877728 c.780C>G synonymous_variant 0.31
rpoA 3877731 c.777G>T synonymous_variant 0.32
rpoA 3877743 c.765T>C synonymous_variant 0.33
rpoA 3877746 c.762G>C synonymous_variant 0.3
rpoA 3877752 p.Asp252Glu missense_variant 0.29
rpoA 3877764 p.Ala248Ser missense_variant 0.3
rpoA 3877770 p.Ser246Ala missense_variant 0.31
rpoA 3877776 c.732T>C synonymous_variant 0.37
rpoA 3877782 c.726T>C synonymous_variant 0.39
rpoA 3877818 c.690A>G synonymous_variant 0.5
rpoA 3877836 c.672A>G synonymous_variant 0.55
rpoA 3877839 c.669G>C synonymous_variant 0.54
rpoA 3877842 c.666A>G synonymous_variant 0.53
rpoA 3877856 c.652T>C synonymous_variant 0.54
rpoA 3877866 c.642G>C synonymous_variant 0.5
rpoA 3877875 c.633T>C synonymous_variant 0.47
rpoA 3877881 c.627G>T synonymous_variant 0.5
rpoA 3877893 c.615C>G synonymous_variant 0.46
rpoA 3877898 p.Pro204Ala missense_variant 0.49
rpoA 3877900 p.Ser203Thr missense_variant 0.5
rpoA 3877902 p.Ile202Met missense_variant 0.5
rpoA 3877905 c.603A>G synonymous_variant 0.5
rpoA 3877908 c.600T>C synonymous_variant 0.49
rpoA 3877920 c.588G>C synonymous_variant 0.5
rpoA 3877935 p.Lys191Arg missense_variant 0.5
rpoA 3877938 c.570C>T synonymous_variant 0.5
rpoA 3877962 c.546G>T synonymous_variant 0.48
rpoA 3877971 p.Asp179Glu missense_variant 0.53
rpoA 3877989 c.519A>G synonymous_variant 0.57
rpoA 3877998 c.510G>C synonymous_variant 0.54
rpoA 3878001 c.507A>G synonymous_variant 0.5
rpoA 3878010 c.498C>G synonymous_variant 0.5
rpoA 3878013 c.495T>C synonymous_variant 0.5
rpoA 3878019 c.489A>G synonymous_variant 0.5
rpoA 3878025 c.483C>T synonymous_variant 0.46
rpoA 3878028 c.480G>C synonymous_variant 0.45
rpoA 3878031 c.477T>C synonymous_variant 0.45
rpoA 3878034 c.474A>G synonymous_variant 0.45
rpoA 3878040 c.468T>C synonymous_variant 0.43
rpoA 3878046 c.462T>G synonymous_variant 0.42
rpoA 3878050 p.Arg153Lys missense_variant 0.42
rpoA 3878055 c.453A>G synonymous_variant 0.44
rpoA 3878061 c.447G>C synonymous_variant 0.46
rpoA 3878067 c.441C>G synonymous_variant 0.46
rpoA 3878070 c.438T>C synonymous_variant 0.48
rpoA 3878082 c.426T>G synonymous_variant 0.52
rpoA 3878102 p.Val136Ile missense_variant 0.5
rpoA 3878103 c.405A>G synonymous_variant 0.5
rpoA 3878106 c.402G>C synonymous_variant 0.52
rpoA 3878118 c.390T>C synonymous_variant 0.51
rpoA 3878127 c.381G>C synonymous_variant 0.48
rpoA 3878136 c.372C>T synonymous_variant 0.5
rpoA 3878161 c.345_346delCG frameshift_variant 0.48
rpoA 3878166 c.341_342insGT frameshift_variant 0.47
rpoA 3878172 c.336G>C synonymous_variant 0.45
rpoA 3878175 c.333G>T synonymous_variant 0.45
rpoA 3878187 c.321C>G synonymous_variant 0.41
rpoA 3878193 c.315T>C synonymous_variant 0.41
rpoA 3878196 p.Glu104Ala missense_variant 0.38
rpoA 3878199 c.309T>C synonymous_variant 0.38
rpoA 3878205 c.303T>C synonymous_variant 0.4
rpoA 3878217 p.Leu97Val missense_variant 0.44
rpoA 3878241 p.Glu89Asp missense_variant 0.35
rpoA 3878250 c.258C>G synonymous_variant 0.33
rpoA 3878253 c.255G>C synonymous_variant 0.31
rpoA 3878256 c.252G>C synonymous_variant 0.33
rpoA 3878264 p.Ser82Gly missense_variant 0.33
rpoA 3878271 c.237T>C synonymous_variant 0.36
rpoA 3878283 p.Glu75Asp missense_variant 0.38
rpoA 3878295 c.213A>G synonymous_variant 0.36
rpoA 3878298 c.210A>G synonymous_variant 0.38
rpoA 3878301 c.207C>G synonymous_variant 0.36
rpoA 3878304 c.204G>C synonymous_variant 0.36
rpoA 3878310 c.198G>C synonymous_variant 0.38
rpoA 3878322 c.186A>G synonymous_variant 0.32
rpoA 3878331 c.177A>G synonymous_variant 0.32
rpoA 3878334 c.174T>C synonymous_variant 0.24
rpoA 3878337 c.171T>C synonymous_variant 0.24
rpoA 3878346 c.162T>C synonymous_variant 0.29
rpoA 3878355 c.153C>G synonymous_variant 0.29
rpoA 3878364 c.144A>C synonymous_variant 0.31
rpoA 3878367 c.141C>G synonymous_variant 0.25
rpoA 3878370 c.138T>C synonymous_variant 0.25
rpoA 3878373 c.135G>C synonymous_variant 0.25
rpoA 3878385 c.123C>G synonymous_variant 0.25
rpoA 3878391 c.117T>C synonymous_variant 0.18
rpoA 3878394 c.114G>C synonymous_variant 0.18
rpoA 3878400 c.108T>C synonymous_variant 0.18
rpoA 3878409 c.99C>G synonymous_variant 0.15
clpC1 4038403 c.2302T>C synonymous_variant 1.0
clpC1 4038725 c.1980C>G synonymous_variant 0.2
clpC1 4038740 c.1965G>C synonymous_variant 0.3
clpC1 4038743 c.1962G>C synonymous_variant 0.32
clpC1 4038755 c.1950G>C synonymous_variant 0.34
clpC1 4038764 c.1941C>G synonymous_variant 0.34
clpC1 4038767 c.1938G>C synonymous_variant 0.36
clpC1 4038770 c.1935C>T synonymous_variant 0.36
clpC1 4038773 c.1932T>C synonymous_variant 0.37
clpC1 4038794 p.Ser637Thr missense_variant 0.39
clpC1 4038808 c.1896_1897insC frameshift_variant 0.42
clpC1 4038811 c.1893delT frameshift_variant 0.38
clpC1 4038860 c.1845G>C synonymous_variant 0.52
clpC1 4038878 c.1827A>G synonymous_variant 0.53
clpC1 4038896 c.1809C>G synonymous_variant 0.61
clpC1 4038905 c.1800A>G synonymous_variant 0.64
clpC1 4038911 c.1794G>T synonymous_variant 0.58
clpC1 4038914 c.1791G>C synonymous_variant 0.56
clpC1 4038923 c.1782A>G synonymous_variant 0.56
clpC1 4038926 c.1779G>C synonymous_variant 0.55
clpC1 4038932 c.1773G>C synonymous_variant 0.55
clpC1 4038941 c.1764G>C synonymous_variant 0.53
clpC1 4038953 c.1752A>G synonymous_variant 0.58
clpC1 4038956 c.1749T>C synonymous_variant 0.59
clpC1 4038965 c.1740T>C synonymous_variant 0.57
clpC1 4038971 c.1734T>C synonymous_variant 0.56
clpC1 4038974 c.1731T>C synonymous_variant 0.56
clpC1 4038986 p.Asp573Glu missense_variant 0.56
clpC1 4038989 c.1716T>C synonymous_variant 0.56
clpC1 4038997 c.1708T>C synonymous_variant 0.56
clpC1 4039004 c.1701C>G synonymous_variant 0.51
clpC1 4039016 c.1689C>G synonymous_variant 0.51
clpC1 4039022 c.1683A>G synonymous_variant 0.53
clpC1 4039085 c.1620A>G synonymous_variant 0.46
clpC1 4039091 c.1614G>C synonymous_variant 0.44
clpC1 4039097 c.1608G>T synonymous_variant 0.4
clpC1 4039100 c.1605C>G synonymous_variant 0.4
clpC1 4039106 c.1599G>C synonymous_variant 0.4
clpC1 4039112 c.1593C>G synonymous_variant 0.4
clpC1 4039118 c.1587C>G synonymous_variant 0.38
clpC1 4039121 c.1584T>C synonymous_variant 0.37
clpC1 4039124 c.1581C>G synonymous_variant 0.38
clpC1 4039142 c.1563A>G synonymous_variant 0.31
clpC1 4039145 c.1560G>C synonymous_variant 0.31
clpC1 4039169 p.Glu512Asp missense_variant 0.23
clpC1 4039172 c.1533A>G synonymous_variant 0.23
clpC1 4039178 c.1527G>C synonymous_variant 0.21
clpC1 4039181 c.1522_1524delTTGinsCTC synonymous_variant 0.21
clpC1 4039187 c.1518G>T synonymous_variant 0.19
clpC1 4039199 p.Ala502Glu missense_variant 0.21
clpC1 4039499 c.1206G>C synonymous_variant 0.19
clpC1 4039517 c.1188C>G synonymous_variant 0.31
clpC1 4039526 c.1179G>C synonymous_variant 0.31
clpC1 4039541 c.1164C>G synonymous_variant 0.28
clpC1 4039547 c.1158C>G synonymous_variant 0.25
clpC1 4039556 c.1149G>C synonymous_variant 0.25
clpC1 4039565 c.1140G>C synonymous_variant 0.24
clpC1 4039570 p.Met379Leu missense_variant 0.25
clpC1 4039574 p.Ala377Ser missense_variant 0.26
clpC1 4039577 c.1128T>C synonymous_variant 0.26
clpC1 4039580 c.1125C>G synonymous_variant 0.26
clpC1 4039586 c.1119G>C synonymous_variant 0.27
clpC1 4039589 p.Val372Ile missense_variant 0.27
clpC1 4039592 c.1113G>C synonymous_variant 0.24
clpC1 4039616 c.1089G>C synonymous_variant 0.3
clpC1 4039642 p.Thr355Ala missense_variant 0.37
clpC1 4039649 c.1056G>C synonymous_variant 0.36
clpC1 4039652 p.Thr351Ser missense_variant 0.35
clpC1 4039661 c.1044T>C synonymous_variant 0.37
clpC1 4039670 c.1035G>C synonymous_variant 0.36
clpC1 4039673 c.1032G>C synonymous_variant 0.37
clpC1 4039694 c.1011G>C synonymous_variant 0.36
clpC1 4039724 c.981A>G synonymous_variant 0.35
clpC1 4039748 c.957G>C synonymous_variant 0.3
clpC1 4039751 c.954A>G synonymous_variant 0.33
clpC1 4039757 c.948A>G synonymous_variant 0.33
clpC1 4039766 c.939T>C synonymous_variant 0.29
clpC1 4039769 c.936C>G synonymous_variant 0.28
clpC1 4039778 c.927A>G synonymous_variant 0.27
clpC1 4039781 c.924G>C synonymous_variant 0.26
clpC1 4039817 c.888A>T synonymous_variant 0.27
clpC1 4039820 c.885T>G synonymous_variant 0.28
clpC1 4039823 c.882T>C synonymous_variant 0.29
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.29
clpC1 4039832 c.873C>G synonymous_variant 0.29
clpC1 4039850 c.855T>C synonymous_variant 0.33
clpC1 4039865 c.840T>C synonymous_variant 0.35
clpC1 4039876 p.Asn277Asp missense_variant 0.33
clpC1 4039895 p.Lys270Arg missense_variant 0.31
clpC1 4039898 c.807C>G synonymous_variant 0.31
clpC1 4039904 c.801A>G synonymous_variant 0.31
clpC1 4039925 c.780C>T synonymous_variant 0.26
clpC1 4039928 c.775_777delAGCinsTCG synonymous_variant 0.26
clpC1 4039931 c.774T>C synonymous_variant 0.25
clpC1 4039934 c.771G>C synonymous_variant 0.27
clpC1 4039943 c.762G>C synonymous_variant 0.3
clpC1 4039946 c.759A>C synonymous_variant 0.31
clpC1 4039952 c.753T>C synonymous_variant 0.31
clpC1 4039964 c.741C>G synonymous_variant 0.32
clpC1 4039982 c.723G>C synonymous_variant 0.35
clpC1 4039988 c.717C>G synonymous_variant 0.29
clpC1 4039994 p.Glu237Asn missense_variant 0.24
clpC1 4040002 p.His235Asn missense_variant 0.23
clpC1 4040003 c.702G>C synonymous_variant 0.23
clpC1 4040021 c.684A>C synonymous_variant 0.2
clpC1 4040024 c.681A>G synonymous_variant 0.19
clpC1 4040030 c.675C>G synonymous_variant 0.19
clpC1 4040033 c.672G>C synonymous_variant 0.2
clpC1 4040045 c.660C>G synonymous_variant 0.2
embC 4240671 p.Thr270Ile missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4242970 c.-263C>T upstream_gene_variant 1.0
embA 4244220 c.988C>T synonymous_variant 1.0
embB 4246551 p.Asn13Ser missense_variant 1.0
embB 4246864 c.351C>T synonymous_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
aftB 4267858 p.Ile327Val missense_variant 1.0
aftB 4269351 c.-515C>T upstream_gene_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
fbiC 1305494 c.2565_*56delCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN frameshift_variant&stop_lost&splice_region_variant 1.0