Rv1630 - c.552G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
57 Sensitive
26 RR-TB
24 HR-TB
32 MDR-TB
8 Pre-XDR-TB
2 XDR-TB
46 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7;lineage4.3.4.1 | 1 |
| lineage3 | 7 |
| La1.2 | 1 |
| lineage4.5 | 1 |
| lineage4.9 | 76 |
| lineage2.2.1 | 17 |
| lineage2.2.2 | 3 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage1.2.2.2 | 1 |
| lineage4.6.1.2 | 5 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.1.2 | 2 |
| lineage4.2.1 | 3 |
| lineage4.3.4.2.1 | 4 |
| lineage4.8 | 8 |
| lineage2.2.1.1 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage1.2.2.1;lineage4.4.1.1 | 2 |
| M.canetti;lineage2.2 | 2 |
| lineage3.1.3 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 3 |
| lineage4.3.3 | 3 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage2.2.1;lineage4.9 | 3 |
| La1.7 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.9.1 | 1 |
| lineage3.1.2.1 | 1 |
| lineage3;lineage4 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.1.1.1 | 2 |
| La1.8.1 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.8.1 | 3 |
| La1.4 | 1 |
| lineage4.8.2;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage2.2.1;lineage4 | 2 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage1.1.1 | 1 |
| La2;lineage2.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| La1.3 | 1 |
| lineage5.1.1 | 1 |
| lineage6 | 1 |
| lineage4 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage4.1.2.1 | 2 |
| 1 | |
| lineage2;lineage4.9 | 1 |
| lineage2.2;lineage4 | 1 |
| La2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 195 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR11465802 | Other | La1.7;lineage4.3.4.1 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4769418 | Other | La1.2 | None | ERR4816548 | HR-TB | lineage4.5 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6359069 | Sensitive | lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR11342682 | Other | lineage4.1.2 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR11465626 | Sensitive | lineage4.3.4.2.1 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR10796578 | Other | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR11465711 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR16156804 | Sensitive | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1172717 | Sensitive | lineage4.9 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | ERR216965 | Sensitive | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR037504 | Other | lineage4.9.1 | None | ERR867567 | RR-TB | lineage3 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR4769433 | RR-TB | lineage4.9 | None | SRR3675230 | Other | lineage3;lineage4 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | ERR9786076 | Sensitive | lineage3 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR16278274 | Other | La1.4 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR4819546 | HR-TB | lineage3 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675441 | Other | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR11465333 | Sensitive | lineage4.3.4.2.1 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR28351408 | Pre-XDR-TB | lineage2.2.1;lineage4 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR6046141 | Other | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR10796565 | Other | lineage4.9 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1180440 | Other | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR6046839 | Other | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | ERR176741 | Other | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR4769495 | Other | La1.3 | None | SRR16156188 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR751345 | Other | lineage5.1.1 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819933 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR9787336 | RR-TB | lineage6 | None | SRR1181349 | Sensitive | lineage4 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | ERR4769493 | Other | lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR10796636 | Other | lineage4.1.2.1 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR11465714 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4798823 | HR-TB | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR1049672 | Other | lineage3 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None |
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