TB-Profiler result

Run: ERR4818646
Summary

Run ID: ERR4818646

Sample name:

Date: 01-04-2023 15:40:25

Number of reads: 1183903

Percentage reads mapped: 22.19

Strain: lineage4.1.2.1

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.1 Euro-American T;X;H None 1.0
lineage4.1.2 Euro-American T;H None 1.0
lineage4.1.2.1 Euro-American (Haarlem) T1;H1 RD182 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6286 c.1047T>C synonymous_variant 0.36
gyrB 6292 c.1053G>C synonymous_variant 0.39
gyrB 6295 c.1056A>G synonymous_variant 0.4
gyrB 6298 c.1059C>T synonymous_variant 0.36
gyrB 6302 p.Ala355Thr missense_variant 0.35
gyrA 6307 c.-995T>G upstream_gene_variant 0.34
gyrB 6308 p.Val357Ile missense_variant 0.34
gyrA 6319 c.-983G>C upstream_gene_variant 0.36
gyrB 6323 p.Val362Leu missense_variant 0.34
gyrA 6331 c.-971A>G upstream_gene_variant 0.39
gyrA 6362 c.-940T>C upstream_gene_variant 0.31
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7584 p.Ser95Ala missense_variant 0.17
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491591 p.Lys270Met missense_variant 1.0
mshA 575679 p.Asn111Ser missense_variant 1.0
rpoB 759888 p.Gly28* stop_gained 0.15
rpoB 760115 c.309C>T synonymous_variant 1.0
rpoB 760946 c.1140A>G synonymous_variant 0.13
rpoB 760973 c.1167G>C synonymous_variant 0.12
rpoB 760982 c.1176G>C synonymous_variant 0.27
rpoB 760985 c.1179G>C synonymous_variant 0.34
rpoB 760991 c.1185G>C synonymous_variant 0.38
rpoB 760997 c.1191G>C synonymous_variant 0.5
rpoB 761015 c.1209G>C synonymous_variant 0.59
rpoB 761027 c.1221A>G synonymous_variant 0.65
rpoB 761036 c.1230G>C synonymous_variant 0.65
rpoB 761037 c.1231T>C synonymous_variant 0.65
rpoB 761057 c.1251G>C synonymous_variant 0.74
rpoB 761064 p.Ala420Ser missense_variant 0.76
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.66
rpoB 761102 c.1296A>G synonymous_variant 0.66
rpoB 761129 c.1323G>T synonymous_variant 0.57
rpoB 761132 c.1326G>T synonymous_variant 0.52
rpoB 761133 c.1327T>C synonymous_variant 0.52
rpoB 761138 c.1332C>G synonymous_variant 0.5
rpoB 761147 c.1341C>G synonymous_variant 0.46
rpoB 761150 c.1344A>C synonymous_variant 0.47
rpoB 761156 c.1350G>C synonymous_variant 0.44
rpoB 761162 c.1356G>C synonymous_variant 0.42
rpoB 761165 c.1359G>C synonymous_variant 0.37
rpoB 761180 c.1374A>C synonymous_variant 0.38
rpoB 761207 c.1401C>T synonymous_variant 0.18
rpoB 761219 c.1413G>C synonymous_variant 0.18
rpoB 761234 c.1428G>C synonymous_variant 0.16
rpoB 761519 c.1713C>T synonymous_variant 0.14
rpoB 761537 c.1731C>G synonymous_variant 0.35
rpoB 761555 c.1749G>C synonymous_variant 0.57
rpoB 761558 c.1752C>G synonymous_variant 0.57
rpoB 761564 c.1758G>C synonymous_variant 0.61
rpoB 761570 c.1764T>C synonymous_variant 0.63
rpoB 761573 c.1767C>G synonymous_variant 0.61
rpoB 761612 c.1806G>C synonymous_variant 0.51
rpoB 761615 c.1809A>G synonymous_variant 0.54
rpoB 761622 p.Gln606Met missense_variant 0.48
rpoB 761633 c.1827G>C synonymous_variant 0.44
rpoB 761636 c.1830G>T synonymous_variant 0.4
rpoB 761643 p.Val613Ile missense_variant 0.24
rpoB 761972 c.2166C>T synonymous_variant 0.23
rpoB 762002 c.2196C>G synonymous_variant 0.42
rpoB 762003 p.Asn733Gln missense_variant 0.42
rpoB 762011 c.2205G>C synonymous_variant 0.46
rpoB 762015 p.Glu737Gln missense_variant 0.45
rpoB 762020 p.Glu738Asp missense_variant 0.45
rpoB 762026 c.2220G>C synonymous_variant 0.51
rpoB 762030 p.Thr742Ser missense_variant 0.51
rpoB 762053 c.2247T>C synonymous_variant 0.5
rpoB 762057 p.Ile751Val missense_variant 0.49
rpoB 762062 c.2256T>C synonymous_variant 0.48
rpoB 762065 c.2259T>C synonymous_variant 0.46
rpoB 762068 c.2262C>T synonymous_variant 0.46
rpoB 762080 c.2274G>C synonymous_variant 0.32
rpoB 762083 c.2277T>C synonymous_variant 0.31
rpoB 762084 p.Ala760Pro missense_variant 0.31
rpoB 762098 c.2292C>T synonymous_variant 0.35
rpoB 762101 c.2295C>G synonymous_variant 0.36
rpoB 762114 p.Ile770Val missense_variant 0.48
rpoB 762122 p.Asp772Glu missense_variant 0.61
rpoB 762128 c.2322G>C synonymous_variant 0.65
rpoB 762140 c.2334G>C synonymous_variant 0.58
rpoB 762143 c.2337T>C synonymous_variant 0.58
rpoB 762149 c.2343G>C synonymous_variant 0.59
rpoB 762156 p.Val784Ile missense_variant 0.65
rpoB 762161 c.2355C>T synonymous_variant 0.67
rpoB 762175 c.2369_2370insCG frameshift_variant 0.67
rpoB 762179 c.2374_2375delGA frameshift_variant 0.61
rpoB 762185 c.2379G>T synonymous_variant 0.66
rpoB 762194 c.2388G>C synonymous_variant 0.71
rpoB 762233 c.2427G>C synonymous_variant 0.63
rpoB 762245 c.2439G>T synonymous_variant 0.61
rpoB 762251 c.2445G>C synonymous_variant 0.61
rpoB 762254 c.2448T>C synonymous_variant 0.61
rpoB 762257 c.2451C>G synonymous_variant 0.6
rpoB 762278 c.2472C>T synonymous_variant 0.6
rpoB 762284 c.2478G>C synonymous_variant 0.59
rpoB 762287 c.2481C>T synonymous_variant 0.56
rpoB 762293 c.2487T>C synonymous_variant 0.53
rpoB 762317 c.2511A>G synonymous_variant 0.17
rpoB 762318 p.Ser838Thr missense_variant 0.17
rpoB 762426 p.Ser874Thr missense_variant 0.12
rpoC 762836 c.-534C>T upstream_gene_variant 0.14
rpoB 762849 p.Tyr1015Asp missense_variant 0.24
rpoB 762855 p.Val1017Ile missense_variant 0.3
rpoB 762858 p.Thr1018Ser missense_variant 0.33
rpoC 762863 c.-507T>C upstream_gene_variant 0.31
rpoC 762866 c.-504C>G upstream_gene_variant 0.42
rpoB 762879 p.Met1025Leu missense_variant 0.53
rpoC 762899 c.-471G>C upstream_gene_variant 0.55
rpoB 762909 p.Ile1035Leu missense_variant 0.56
rpoC 762923 c.-447C>G upstream_gene_variant 0.56
rpoC 762929 c.-441G>T upstream_gene_variant 0.54
rpoC 762962 c.-408C>T upstream_gene_variant 0.55
rpoC 762995 c.-375G>T upstream_gene_variant 0.43
rpoB 763005 p.Cys1067Val missense_variant 0.32
rpoC 763013 c.-357C>A upstream_gene_variant 0.27
rpoB 763014 p.Met1070Leu missense_variant 0.28
rpoB 763017 p.Gln1071Glu missense_variant 0.28
rpoC 763031 c.-339T>C upstream_gene_variant 0.45
rpoB 763038 p.Thr1078Ala missense_variant 0.44
rpoC 763043 c.-327G>C upstream_gene_variant 0.54
rpoC 763053 c.-317T>C upstream_gene_variant 0.57
rpoC 763070 c.-300T>C upstream_gene_variant 0.56
rpoB 763074 p.Thr1090Val missense_variant 0.58
rpoB 763077 p.Val1091Thr missense_variant 0.58
rpoC 763094 c.-276G>C upstream_gene_variant 0.53
rpoC 763115 c.-255T>C upstream_gene_variant 0.49
rpoC 763127 c.-243G>C upstream_gene_variant 0.49
rpoC 763133 c.-237G>C upstream_gene_variant 0.47
rpoC 763148 c.-222G>C upstream_gene_variant 0.34
rpoC 763160 c.-210G>C upstream_gene_variant 0.14
rpoB 763161 p.Leu1119Ile missense_variant 0.14
rpoC 763166 c.-204A>G upstream_gene_variant 0.14
rpoC 763169 c.-201A>G upstream_gene_variant 0.14
rpoB 763170 p.Leu1122Met missense_variant 0.14
rpoC 763181 c.-189G>C upstream_gene_variant 0.15
rpoC 763455 c.87A>G synonymous_variant 0.25
rpoC 763462 c.93G>C synonymous_variant 0.31
rpoC 763468 c.99G>C synonymous_variant 0.39
rpoC 763483 c.114G>C synonymous_variant 0.56
rpoC 763486 c.117T>C synonymous_variant 0.57
rpoC 763492 c.123G>C synonymous_variant 0.63
rpoC 763495 c.126G>A synonymous_variant 0.63
rpoC 763507 c.138G>C synonymous_variant 0.67
rpoC 763528 c.159G>C synonymous_variant 0.66
rpoC 763531 c.162G>C synonymous_variant 0.65
rpoC 763534 c.165T>C synonymous_variant 0.66
rpoC 763537 c.168C>G synonymous_variant 0.66
rpoC 763546 c.177A>G synonymous_variant 0.65
rpoC 763570 c.201G>C synonymous_variant 0.68
rpoC 763573 c.204G>C synonymous_variant 0.72
rpoC 763594 c.225C>T synonymous_variant 0.74
rpoC 763615 c.246G>C synonymous_variant 0.67
rpoC 763633 c.264T>C synonymous_variant 0.68
rpoC 763660 c.291T>G synonymous_variant 0.66
rpoC 763672 c.303C>G synonymous_variant 0.61
rpoC 763696 c.327T>C synonymous_variant 0.49
rpoC 763699 c.330G>C synonymous_variant 0.51
rpoC 763702 c.333C>G synonymous_variant 0.51
rpoC 763708 c.339G>C synonymous_variant 0.54
rpoC 763714 c.345G>C synonymous_variant 0.54
rpoC 763717 c.348T>C synonymous_variant 0.54
rpoC 763723 c.354G>C synonymous_variant 0.56
rpoC 763729 c.360G>C synonymous_variant 0.55
rpoC 763751 p.Ile128Val missense_variant 0.46
rpoC 763765 c.396T>G synonymous_variant 0.33
rpoC 763768 c.399C>G synonymous_variant 0.28
rpoC 763772 p.Val135Met missense_variant 0.24
rpoC 763780 c.411C>G synonymous_variant 0.17
rpoC 763900 c.531G>C synonymous_variant 0.19
rpoC 763945 c.576T>C synonymous_variant 0.38
rpoC 763947 p.Ala193Val missense_variant 0.38
rpoC 763951 c.582G>C synonymous_variant 0.4
rpoC 763960 c.591T>G synonymous_variant 0.43
rpoC 763966 p.Asp199Glu missense_variant 0.43
rpoC 763967 p.Gly200Ser missense_variant 0.4
rpoC 763971 p.Gly201Ala missense_variant 0.4
rpoC 764387 c.1018T>C synonymous_variant 0.21
rpoC 764405 c.1036_1038delAGGinsCGT synonymous_variant 0.48
rpoC 764410 c.1041G>C synonymous_variant 0.54
rpoC 764428 c.1059G>C synonymous_variant 0.56
rpoC 764434 c.1065A>G synonymous_variant 0.56
rpoC 764435 c.1066A>C synonymous_variant 0.56
rpoC 764440 c.1071G>T synonymous_variant 0.56
rpoC 764441 p.Ile358Leu missense_variant 0.56
rpoC 764446 c.1077T>C synonymous_variant 0.54
rpoC 764449 c.1080G>C synonymous_variant 0.54
rpoC 764458 c.1089G>C synonymous_variant 0.57
rpoC 764461 c.1092A>G synonymous_variant 0.58
rpoC 764485 c.1116G>C synonymous_variant 0.58
rpoC 764491 c.1122G>C synonymous_variant 0.55
rpoC 764497 c.1128A>G synonymous_variant 0.46
rpoC 764498 p.Ser377Ala missense_variant 0.38
rpoC 764503 c.1134G>C synonymous_variant 0.53
rpoC 764512 c.1143G>C synonymous_variant 0.57
rpoC 764521 c.1152T>C synonymous_variant 0.56
rpoC 764536 c.1167G>C synonymous_variant 0.61
rpoC 764539 c.1170C>G synonymous_variant 0.6
rpoC 764545 c.1176C>G synonymous_variant 0.59
rpoC 764548 c.1179G>C synonymous_variant 0.61
rpoC 764551 c.1182G>C synonymous_variant 0.66
rpoC 764566 c.1197C>G synonymous_variant 0.68
rpoC 764575 c.1206T>G synonymous_variant 0.68
rpoC 764581 c.1212T>C synonymous_variant 0.69
rpoC 764582 p.Leu405Met missense_variant 0.69
rpoC 764605 c.1236G>C synonymous_variant 0.72
rpoC 764611 c.1242G>C synonymous_variant 0.63
rpoC 764646 p.Gly426Ala missense_variant 0.52
rpoC 764650 c.1281G>T synonymous_variant 0.49
rpoC 764653 c.1284G>C synonymous_variant 0.48
rpoC 764656 c.1287C>G synonymous_variant 0.48
rpoC 764662 c.1293G>C synonymous_variant 0.51
rpoC 764668 c.1299C>T synonymous_variant 0.53
rpoC 764677 c.1308C>G synonymous_variant 0.59
rpoC 764701 c.1332C>G synonymous_variant 0.57
rpoC 764705 p.Leu446Ala missense_variant 0.54
rpoC 764734 c.1365C>T synonymous_variant 0.47
rpoC 764746 c.1377G>C synonymous_variant 0.46
rpoC 764752 c.1383G>C synonymous_variant 0.45
rpoC 764758 c.1389C>G synonymous_variant 0.4
rpoC 764764 c.1395T>C synonymous_variant 0.44
rpoC 764797 c.1428G>C synonymous_variant 0.36
rpoC 764804 p.Gln479Gly missense_variant 0.36
rpoC 764810 p.Pro481Thr missense_variant 0.35
rpoC 764813 p.Gln482Val missense_variant 0.35
rpoC 764820 p.Trp484Tyr missense_variant 0.34
rpoC 764824 c.1455T>C synonymous_variant 0.38
rpoC 764827 c.1458G>C synonymous_variant 0.37
rpoC 764858 c.1489T>C synonymous_variant 0.37
rpoC 764968 c.1599T>C synonymous_variant 0.15
rpoC 764971 c.1602C>G synonymous_variant 0.18
rpoC 765007 c.1638T>G synonymous_variant 0.24
rpoC 765008 c.1639T>C synonymous_variant 0.24
rpoC 765011 c.1642_1643delAGinsTC synonymous_variant 0.24
rpoC 765016 c.1647C>G synonymous_variant 0.26
rpoC 765019 c.1650A>G synonymous_variant 0.26
rpoC 765034 c.1665T>C synonymous_variant 0.25
rpoC 765040 c.1671T>C synonymous_variant 0.25
rpoC 765041 c.1672T>C synonymous_variant 0.26
rpoC 765047 c.1678T>C synonymous_variant 0.26
rpoC 765055 c.1686C>G synonymous_variant 0.26
rpoC 765150 p.Gly594Glu missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 777043 c.1438C>A synonymous_variant 0.14
mmpR5 779217 c.230_231delTT frameshift_variant 0.13
mmpR5 779393 p.Arg135Gln missense_variant 0.12
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781754 c.195G>C synonymous_variant 0.41
rpsL 781763 c.204C>G synonymous_variant 0.51
rpsL 781766 c.207C>T synonymous_variant 0.53
rpsL 781772 c.213C>A synonymous_variant 0.64
rpsL 781793 c.234G>C synonymous_variant 0.67
rpsL 781796 p.Met79Ile missense_variant 0.66
rpsL 781802 c.243G>C synonymous_variant 0.61
rpsL 781817 c.258G>T synonymous_variant 0.62
rpsL 781832 c.273T>G synonymous_variant 0.6
rpsL 781838 c.279G>T synonymous_variant 0.6
rpsL 781856 c.297C>T synonymous_variant 0.42
rpsL 781859 c.300T>C synonymous_variant 0.45
rpsL 781865 c.306G>C synonymous_variant 0.4
rpsL 781868 c.309T>C synonymous_variant 0.4
rpsL 781871 c.312G>C synonymous_variant 0.4
rpsL 781892 c.333A>G synonymous_variant 0.45
rpsL 781898 c.339A>T synonymous_variant 0.4
rpsL 781916 c.357T>C synonymous_variant 0.2
rplC 800644 c.-165G>A upstream_gene_variant 0.13
fbiC 1305381 c.2451G>C synonymous_variant 0.18
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471917 n.72G>A non_coding_transcript_exon_variant 0.15
rrs 1471969 n.124T>C non_coding_transcript_exon_variant 0.65
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.65
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 0.65
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.65
rrs 1471991 n.146T>C non_coding_transcript_exon_variant 0.59
rrs 1471997 n.152T>C non_coding_transcript_exon_variant 0.59
rrs 1471998 n.153G>T non_coding_transcript_exon_variant 0.59
rrs 1472005 n.160T>G non_coding_transcript_exon_variant 0.59
rrs 1472023 n.178G>C non_coding_transcript_exon_variant 0.15
rrs 1472068 n.223T>C non_coding_transcript_exon_variant 0.26
rrs 1472069 n.224G>A non_coding_transcript_exon_variant 0.26
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.87
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.87
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.88
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.88
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.94
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.95
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.96
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.98
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.87
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.29
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.54
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.5
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.57
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.57
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.63
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.45
rrs 1472425 n.580T>C non_coding_transcript_exon_variant 0.45
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.24
rrs 1472437 n.592T>G non_coding_transcript_exon_variant 0.24
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.24
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 0.33
rrs 1472486 n.641A>G non_coding_transcript_exon_variant 0.65
rrs 1472494 n.649A>T non_coding_transcript_exon_variant 0.65
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 0.67
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.7
rrs 1472507 n.662C>T non_coding_transcript_exon_variant 0.71
rrs 1472508 n.663T>C non_coding_transcript_exon_variant 0.71
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.88
rrs 1472571 n.726G>A non_coding_transcript_exon_variant 0.94
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.93
rrs 1472583 n.738T>A non_coding_transcript_exon_variant 0.93
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.93
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.92
rrs 1472673 n.828T>C non_coding_transcript_exon_variant 0.9
rrs 1472674 n.829T>A non_coding_transcript_exon_variant 0.88
rrs 1472675 n.830T>G non_coding_transcript_exon_variant 0.89
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.88
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.95
rrs 1472793 n.948A>C non_coding_transcript_exon_variant 0.98
rrs 1472803 n.958T>C non_coding_transcript_exon_variant 0.96
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.74
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.72
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.72
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.48
rrs 1472863 n.1018T>C non_coding_transcript_exon_variant 0.22
rrs 1472873 n.1028C>T non_coding_transcript_exon_variant 0.79
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.82
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.87
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.84
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.81
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.65
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 0.65
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.66
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.72
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.72
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.73
rrs 1472996 n.1151T>C non_coding_transcript_exon_variant 0.83
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.86
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.93
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.93
rrs 1473062 n.1217T>G non_coding_transcript_exon_variant 0.96
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 0.96
rrs 1473091 n.1246G>A non_coding_transcript_exon_variant 0.98
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.98
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.98
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.99
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.99
rrs 1473120 n.1275C>T non_coding_transcript_exon_variant 0.99
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.99
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.99
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.99
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.98
rrs 1473201 n.1356A>T non_coding_transcript_exon_variant 0.98
rrs 1473202 n.1357C>T non_coding_transcript_exon_variant 0.98
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.96
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.95
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 0.94
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.95
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.95
rrl 1473392 n.-266C>T upstream_gene_variant 0.2
rrl 1473666 n.9G>T non_coding_transcript_exon_variant 0.17
rrl 1473668 n.11C>T non_coding_transcript_exon_variant 0.17
rrl 1473679 n.22T>C non_coding_transcript_exon_variant 0.42
rrl 1473696 n.39T>C non_coding_transcript_exon_variant 0.58
rrl 1473698 n.41G>A non_coding_transcript_exon_variant 0.6
rrl 1473699 n.42A>G non_coding_transcript_exon_variant 0.6
rrl 1473702 n.45G>A non_coding_transcript_exon_variant 0.63
rrl 1473724 n.67T>C non_coding_transcript_exon_variant 0.63
rrl 1473731 n.74T>G non_coding_transcript_exon_variant 0.54
rrl 1473735 n.78T>C non_coding_transcript_exon_variant 0.52
rrl 1473743 n.86C>T non_coding_transcript_exon_variant 0.27
rrl 1473744 n.87T>C non_coding_transcript_exon_variant 0.27
rrl 1473752 n.95G>A non_coding_transcript_exon_variant 0.23
rrl 1473753 n.96A>G non_coding_transcript_exon_variant 0.23
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.23
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.23
rrl 1473765 n.108A>G non_coding_transcript_exon_variant 0.23
rrl 1473768 n.111A>G non_coding_transcript_exon_variant 0.23
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.23
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.29
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.29
rrl 1473887 n.230T>C non_coding_transcript_exon_variant 0.29
rrl 1473888 n.231T>C non_coding_transcript_exon_variant 0.29
rrl 1474133 n.476T>A non_coding_transcript_exon_variant 0.44
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 0.44
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.75
rrl 1474153 n.496C>G non_coding_transcript_exon_variant 0.84
rrl 1474166 n.509G>C non_coding_transcript_exon_variant 0.89
rrl 1474179 n.522C>T non_coding_transcript_exon_variant 0.93
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.93
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.93
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.93
rrl 1474200 n.545delT non_coding_transcript_exon_variant 0.95
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.93
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 0.45
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.29
rrl 1474349 n.692A>T non_coding_transcript_exon_variant 0.29
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 0.28
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.28
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.31
rrl 1474355 n.698A>G non_coding_transcript_exon_variant 0.31
rrl 1474359 n.702C>T non_coding_transcript_exon_variant 0.33
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.33
rrl 1474374 n.717T>G non_coding_transcript_exon_variant 0.31
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.33
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.29
rrl 1474406 n.749T>G non_coding_transcript_exon_variant 0.29
rrl 1474551 n.894G>C non_coding_transcript_exon_variant 0.67
rrl 1474558 n.901G>T non_coding_transcript_exon_variant 0.76
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.71
rrl 1474628 n.971C>T non_coding_transcript_exon_variant 0.71
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.71
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.75
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.75
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.71
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.71
rrl 1474651 n.995delT non_coding_transcript_exon_variant 0.83
rrl 1474660 n.1003G>A non_coding_transcript_exon_variant 0.89
rrl 1474662 n.1005C>G non_coding_transcript_exon_variant 0.89
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 0.89
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 0.89
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.89
rrl 1474688 n.1031G>C non_coding_transcript_exon_variant 0.95
rrl 1474690 n.1033C>T non_coding_transcript_exon_variant 0.95
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 0.89
rrl 1474717 n.1060_1061insGTGAG non_coding_transcript_exon_variant 0.89
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.93
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.94
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.94
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.9
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.83
rrl 1474777 n.1120T>G non_coding_transcript_exon_variant 0.82
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.8
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 0.8
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.87
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.9
rrl 1474802 n.1145T>C non_coding_transcript_exon_variant 0.94
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.93
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.93
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.87
rrl 1474896 n.1239A>T non_coding_transcript_exon_variant 0.75
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.54
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.54
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.54
rrl 1474933 n.1276A>G non_coding_transcript_exon_variant 0.18
rrl 1474934 n.1277C>T non_coding_transcript_exon_variant 0.18
rrl 1475011 n.1354G>T non_coding_transcript_exon_variant 0.67
rrl 1475089 n.1432A>T non_coding_transcript_exon_variant 0.5
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.5
rrl 1475108 n.1451C>T non_coding_transcript_exon_variant 0.8
rrl 1475111 n.1454G>A non_coding_transcript_exon_variant 0.8
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.8
rrl 1475115 n.1458A>G non_coding_transcript_exon_variant 0.8
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.8
rrl 1475119 n.1462C>T non_coding_transcript_exon_variant 0.8
rrl 1475129 n.1472G>A non_coding_transcript_exon_variant 0.87
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 0.89
rrl 1475175 n.1518G>C non_coding_transcript_exon_variant 0.94
rrl 1475188 n.1531C>G non_coding_transcript_exon_variant 0.93
rrl 1475499 n.1842C>T non_coding_transcript_exon_variant 0.84
rrl 1475508 n.1851A>T non_coding_transcript_exon_variant 0.86
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.9
rrl 1475532 n.1875A>G non_coding_transcript_exon_variant 0.9
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.92
rrl 1475542 n.1885A>G non_coding_transcript_exon_variant 0.93
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.93
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.93
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.83
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.5
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.91
rrl 1475655 n.1998T>C non_coding_transcript_exon_variant 0.92
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.93
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.93
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.93
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.94
rrl 1475740 n.2083G>C non_coding_transcript_exon_variant 0.85
rrl 1475747 n.2090A>G non_coding_transcript_exon_variant 0.82
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.59
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.44
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.75
rrl 1475781 n.2124T>C non_coding_transcript_exon_variant 0.83
rrl 1475788 n.2131C>G non_coding_transcript_exon_variant 0.86
rrl 1475883 n.2226A>G non_coding_transcript_exon_variant 0.98
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.97
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.97
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.97
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.96
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.95
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.95
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.92
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.89
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.86
rrl 1475982 n.2325G>A non_coding_transcript_exon_variant 0.9
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.89
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.9
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.9
rrl 1476015 n.2358G>C non_coding_transcript_exon_variant 0.88
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.7
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.7
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.29
rrl 1476126 n.2469C>T non_coding_transcript_exon_variant 0.83
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 0.83
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.83
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.93
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.93
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.94
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.94
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.94
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.92
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.91
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.91
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.58
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.45
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.45
rrl 1476255 n.2598A>G non_coding_transcript_exon_variant 0.45
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.45
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.45
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.45
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.45
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.45
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.45
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.98
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.98
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.96
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.88
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.75
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.7
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.67
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.67
rrl 1476528 n.2871A>G non_coding_transcript_exon_variant 0.67
rrl 1476529 n.2872A>T non_coding_transcript_exon_variant 0.67
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.67
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.61
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.61
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.61
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.32
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.32
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.33
rrl 1476596 n.2939C>T non_coding_transcript_exon_variant 0.32
rrl 1476601 n.2944G>A non_coding_transcript_exon_variant 0.29
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.3
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.3
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.3
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.3
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.3
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 0.3
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.3
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.32
rrl 1476708 n.3051C>T non_coding_transcript_exon_variant 0.4
inhA 1674252 c.51C>T synonymous_variant 0.12
inhA 1674365 p.Pro55Arg missense_variant 0.25
inhA 1674823 p.Gly208Ser missense_variant 0.14
rpsA 1833661 p.Glu40Asp missense_variant 0.13
rpsA 1833665 p.Thr42Val missense_variant 0.13
rpsA 1833673 c.132C>G synonymous_variant 0.24
rpsA 1833676 c.135A>G synonymous_variant 0.28
rpsA 1833679 c.138G>C synonymous_variant 0.26
rpsA 1833694 c.153G>C synonymous_variant 0.43
rpsA 1833697 c.156C>G synonymous_variant 0.48
rpsA 1833709 c.168C>G synonymous_variant 0.6
rpsA 1833724 c.183C>T synonymous_variant 0.66
rpsA 1833727 c.186G>C synonymous_variant 0.64
rpsA 1833733 c.192C>G synonymous_variant 0.64
rpsA 1833734 p.Ala65Ser missense_variant 0.64
rpsA 1833742 c.201A>G synonymous_variant 0.61
rpsA 1833745 c.204G>C synonymous_variant 0.59
rpsA 1833748 c.207C>G synonymous_variant 0.59
rpsA 1833769 c.228C>G synonymous_variant 0.46
rpsA 1833781 c.240T>C synonymous_variant 0.44
rpsA 1833782 p.Ser81Ala missense_variant 0.44
rpsA 1833797 p.Val86Ile missense_variant 0.46
rpsA 1833802 c.261A>G synonymous_variant 0.46
rpsA 1833811 c.270G>T synonymous_variant 0.35
rpsA 1833815 p.Thr92Gln missense_variant 0.33
rpsA 1833829 c.288A>G synonymous_variant 0.34
rpsA 1833832 c.291G>A synonymous_variant 0.36
rpsA 1833838 c.297G>C synonymous_variant 0.37
rpsA 1833841 c.300C>G synonymous_variant 0.37
rpsA 1833850 c.309C>G synonymous_variant 0.31
rpsA 1833856 c.315A>G synonymous_variant 0.31
rpsA 1833862 c.321G>C synonymous_variant 0.29
rpsA 1833893 p.Ala118Lys missense_variant 0.18
rpsA 1833896 p.Leu119Ile missense_variant 0.17
rpsA 1833928 c.387G>C synonymous_variant 0.17
rpsA 1833952 c.411C>T synonymous_variant 0.32
rpsA 1833955 c.414G>C synonymous_variant 0.32
rpsA 1833970 c.429G>C synonymous_variant 0.39
rpsA 1833973 c.432G>C synonymous_variant 0.4
rpsA 1833979 c.438T>C synonymous_variant 0.39
rpsA 1833985 c.444G>C synonymous_variant 0.43
rpsA 1833988 c.447C>G synonymous_variant 0.44
rpsA 1833994 c.453G>C synonymous_variant 0.49
rpsA 1834000 c.459G>C synonymous_variant 0.5
rpsA 1834012 c.471G>T synonymous_variant 0.43
rpsA 1834015 c.474G>C synonymous_variant 0.43
rpsA 1834021 c.480C>T synonymous_variant 0.48
rpsA 1834024 c.483G>C synonymous_variant 0.49
rpsA 1834030 c.489C>G synonymous_variant 0.53
rpsA 1834034 p.Ile165Val missense_variant 0.51
rpsA 1834046 p.Ile169Leu missense_variant 0.6
rpsA 1834054 c.513C>G synonymous_variant 0.57
rpsA 1834093 c.552G>C synonymous_variant 0.49
rpsA 1834096 c.555G>C synonymous_variant 0.48
rpsA 1834102 c.561T>C synonymous_variant 0.46
rpsA 1834105 c.564C>T synonymous_variant 0.49
rpsA 1834210 c.669C>T synonymous_variant 0.29
rpsA 1834213 c.672G>C synonymous_variant 0.29
rpsA 1834219 c.678C>G synonymous_variant 0.29
rpsA 1834222 c.681T>C synonymous_variant 0.38
rpsA 1834231 c.690T>C synonymous_variant 0.4
rpsA 1834234 c.693G>C synonymous_variant 0.4
rpsA 1834246 c.705G>C synonymous_variant 0.47
rpsA 1834249 c.708T>C synonymous_variant 0.5
rpsA 1834255 c.714C>G synonymous_variant 0.61
rpsA 1834261 c.720A>G synonymous_variant 0.61
rpsA 1834264 c.723G>C synonymous_variant 0.61
rpsA 1834294 c.753G>C synonymous_variant 0.56
rpsA 1834298 p.Gln253Glu missense_variant 0.55
rpsA 1834303 c.762T>G synonymous_variant 0.54
rpsA 1834306 c.765T>C synonymous_variant 0.55
rpsA 1834307 p.Asp256Gln missense_variant 0.55
rpsA 1834327 c.786G>C synonymous_variant 0.52
rpsA 1834348 c.807T>C synonymous_variant 0.4
rpsA 1834354 c.813G>T synonymous_variant 0.28
rpsA 1834357 c.816T>C synonymous_variant 0.27
rpsA 1834360 c.819G>C synonymous_variant 0.26
rpsA 1834361 c.820T>C synonymous_variant 0.28
rpsA 1834366 c.825A>G synonymous_variant 0.29
rpsA 1834369 c.828C>G synonymous_variant 0.29
rpsA 1834378 c.837T>C synonymous_variant 0.37
rpsA 1834395 p.Arg285Gln missense_variant 0.41
rpsA 1834399 p.His286Gln missense_variant 0.43
rpsA 1834408 c.867C>T synonymous_variant 0.4
rpsA 1834411 c.870T>C synonymous_variant 0.26
rpsA 1834415 p.Ala292Gln missense_variant 0.24
rpsA 1834423 c.882G>C synonymous_variant 0.33
rpsA 1834427 p.Ile296Val missense_variant 0.3
rpsA 1834435 c.894G>C synonymous_variant 0.35
rpsA 1834447 c.906C>G synonymous_variant 0.52
rpsA 1834451 c.910T>C synonymous_variant 0.54
rpsA 1834468 c.927A>G synonymous_variant 0.48
rpsA 1834477 c.936C>T synonymous_variant 0.42
rpsA 1834480 c.939C>G synonymous_variant 0.42
rpsA 1834483 p.Glu314Asp missense_variant 0.42
rpsA 1834489 c.948T>C synonymous_variant 0.42
rpsA 1834498 c.957C>T synonymous_variant 0.46
rpsA 1834504 c.963G>C synonymous_variant 0.46
rpsA 1834528 c.987T>C synonymous_variant 0.32
rpsA 1834534 c.993C>G synonymous_variant 0.19
rpsA 1834538 p.Val333Met missense_variant 0.13
tlyA 1917972 c.33A>G synonymous_variant 0.95
ndh 2102055 p.Pro330Thr missense_variant 0.15
PPE35 2169879 p.Phe245Ser missense_variant 0.12
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2288710 p.Ala178Thr missense_variant 0.14
kasA 2518076 c.-39C>T upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3086823 p.Arg2Cys missense_variant 0.13
ald 3087704 c.885T>C synonymous_variant 0.15
ald 3087713 c.894G>C synonymous_variant 0.19
ald 3087716 c.897G>C synonymous_variant 0.19
ald 3087727 p.Ala303Gly missense_variant 0.21
ald 3087729 p.Ser304Ala missense_variant 0.21
ald 3087737 c.918G>C synonymous_variant 0.19
ald 3087740 p.Lys307Asn missense_variant 0.19
ald 3087743 c.924G>C synonymous_variant 0.2
ald 3087746 c.927G>C synonymous_variant 0.19
ald 3087767 c.948G>C synonymous_variant 0.15
ald 3087771 p.Met318Leu missense_variant 0.16
Rv3083 3448368 c.-136C>T upstream_gene_variant 0.17
Rv3083 3449091 p.Met196Ile missense_variant 0.15
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474208 c.206delA frameshift_variant 0.25
Rv3236c 3612360 p.Gly253Arg missense_variant 0.14
Rv3236c 3612649 c.468G>A synonymous_variant 0.33
alr 3840627 p.Ala265Asp missense_variant 0.12
alr 3840688 p.Asp245Asn missense_variant 0.11
rpoA 3877920 c.588G>C synonymous_variant 0.24
rpoA 3877926 p.Leu194Val missense_variant 0.29
rpoA 3877962 c.546G>T synonymous_variant 0.44
rpoA 3877965 c.543C>G synonymous_variant 0.4
rpoA 3877971 p.Asp179Glu missense_variant 0.42
rpoA 3877974 c.534G>C synonymous_variant 0.42
rpoA 3877986 c.522G>C synonymous_variant 0.32
rpoA 3877989 c.519A>G synonymous_variant 0.32
rpoA 3878001 c.507A>G synonymous_variant 0.3
rpoA 3878013 c.495T>C synonymous_variant 0.36
rpoA 3878019 c.489A>G synonymous_variant 0.23
rpoA 3878022 c.486T>C synonymous_variant 0.23
clpC1 4038815 c.1890G>C synonymous_variant 0.14
clpC1 4038826 p.Ile627Val missense_variant 0.31
clpC1 4038836 c.1869G>C synonymous_variant 0.29
clpC1 4038839 c.1866G>C synonymous_variant 0.29
clpC1 4038845 c.1860G>C synonymous_variant 0.35
clpC1 4038872 c.1833C>G synonymous_variant 0.38
clpC1 4038875 c.1830C>G synonymous_variant 0.36
clpC1 4038878 c.1827A>G synonymous_variant 0.36
clpC1 4038899 c.1806C>G synonymous_variant 0.17
clpC1 4038905 c.1800A>T synonymous_variant 0.2
clpC1 4038911 c.1794G>C synonymous_variant 0.13
clpC1 4038983 p.Asp574Glu missense_variant 0.15
clpC1 4038997 c.1708T>C synonymous_variant 0.15
clpC1 4039001 p.Asn568Glu missense_variant 0.14
clpC1 4039004 c.1701C>G synonymous_variant 0.14
clpC1 4039034 c.1671C>G synonymous_variant 0.14
clpC1 4039067 p.Ser546Gly missense_variant 0.15
clpC1 4039073 c.1632C>T synonymous_variant 0.15
clpC1 4039079 c.1626C>G synonymous_variant 0.15
clpC1 4039085 c.1620A>G synonymous_variant 0.16
clpC1 4039091 c.1614G>T synonymous_variant 0.16
clpC1 4039094 c.1611C>G synonymous_variant 0.16
clpC1 4039097 c.1608G>T synonymous_variant 0.16
clpC1 4039106 c.1599G>C synonymous_variant 0.18
clpC1 4039112 c.1593C>G synonymous_variant 0.21
clpC1 4039121 p.Val528Leu missense_variant 0.2
clpC1 4039124 c.1581C>G synonymous_variant 0.21
clpC1 4039382 p.Ala441Ser missense_variant 0.21
clpC1 4039391 c.1314T>G synonymous_variant 0.19
clpC1 4039394 c.1311G>C synonymous_variant 0.19
clpC1 4039397 c.1308A>G synonymous_variant 0.2
clpC1 4039403 p.Glu434Asp missense_variant 0.2
clpC1 4039409 c.1296T>C synonymous_variant 0.2
clpC1 4039412 p.Ala431Val missense_variant 0.24
clpC1 4039416 p.Glu430Ala missense_variant 0.27
clpC1 4039430 c.1275T>C synonymous_variant 0.42
clpC1 4039442 c.1263A>G synonymous_variant 0.47
clpC1 4039448 c.1257A>G synonymous_variant 0.47
clpC1 4039454 c.1251A>G synonymous_variant 0.48
clpC1 4039463 c.1242C>G synonymous_variant 0.46
clpC1 4039466 c.1239T>C synonymous_variant 0.46
clpC1 4039469 c.1236T>C synonymous_variant 0.45
clpC1 4039481 p.Ala408Ser missense_variant 0.45
clpC1 4039484 c.1221T>C synonymous_variant 0.45
clpC1 4039487 c.1218G>C synonymous_variant 0.46
clpC1 4039517 c.1188C>G synonymous_variant 0.5
clpC1 4039526 c.1179G>C synonymous_variant 0.38
clpC1 4039532 p.Asn391Ser missense_variant 0.17
clpC1 4039541 c.1164C>G synonymous_variant 0.42
clpC1 4039555 c.1147_1149delGCG conservative_inframe_deletion 0.4
clpC1 4039565 c.1139_1140insTCA disruptive_inframe_insertion 0.4
clpC1 4039570 p.Met379Leu missense_variant 0.44
clpC1 4039575 p.Ala377Glu missense_variant 0.38
clpC1 4039577 c.1128T>C synonymous_variant 0.38
clpC1 4039586 c.1119G>C synonymous_variant 0.4
clpC1 4039589 c.1116G>C synonymous_variant 0.4
clpC1 4039592 c.1113G>T synonymous_variant 0.42
clpC1 4039616 c.1089G>C synonymous_variant 0.42
clpC1 4039802 c.903G>C synonymous_variant 0.33
clpC1 4039817 c.888A>C synonymous_variant 0.27
clpC1 4039820 c.885T>G synonymous_variant 0.27
clpC1 4039823 c.882T>G synonymous_variant 0.28
clpC1 4039831 c.874T>C synonymous_variant 0.28
clpC1 4039832 c.873C>G synonymous_variant 0.37
clpC1 4039850 c.855T>C synonymous_variant 0.41
clpC1 4039865 c.840T>C synonymous_variant 0.43
clpC1 4039875 p.Asn277Arg missense_variant 0.42
clpC1 4039898 c.807C>G synonymous_variant 0.5
clpC1 4039904 c.801A>G synonymous_variant 0.5
clpC1 4039929 c.775_776delAGinsTC synonymous_variant 0.37
clpC1 4039931 c.774T>C synonymous_variant 0.33
clpC1 4039934 c.771G>C synonymous_variant 0.33
clpC1 4039943 p.Ser254Ala missense_variant 0.36
clpC1 4039946 c.759A>C synonymous_variant 0.34
clpC1 4039949 c.756G>C synonymous_variant 0.33
clpC1 4039952 c.753T>C synonymous_variant 0.32
clpC1 4039958 c.747G>C synonymous_variant 0.43
clpC1 4039967 p.Gln246His missense_variant 0.51
clpC1 4039982 c.723G>C synonymous_variant 0.5
clpC1 4040000 p.His235Lys missense_variant 0.34
clpC1 4040003 c.702G>C synonymous_variant 0.34
clpC1 4040018 c.687G>C synonymous_variant 0.38
clpC1 4040021 c.684A>C synonymous_variant 0.36
clpC1 4040024 c.681A>G synonymous_variant 0.4
clpC1 4040033 c.672G>C synonymous_variant 0.45
clpC1 4040048 c.657C>T synonymous_variant 0.41
clpC1 4040054 c.651G>A synonymous_variant 0.31
clpC1 4040057 c.648C>T synonymous_variant 0.31
clpC1 4040066 c.639G>C synonymous_variant 0.45
clpC1 4040084 c.621C>T synonymous_variant 0.37
clpC1 4040087 c.618G>C synonymous_variant 0.45
clpC1 4040090 c.615T>C synonymous_variant 0.41
clpC1 4040093 c.612C>G synonymous_variant 0.37
clpC1 4040117 c.588A>G synonymous_variant 0.44
clpC1 4040129 c.576C>G synonymous_variant 0.44
clpC1 4040257 p.Ala150Thr missense_variant 0.24
clpC1 4040267 c.438A>G synonymous_variant 0.37
clpC1 4040300 c.405C>G synonymous_variant 0.42
clpC1 4040306 c.399G>C synonymous_variant 0.4
clpC1 4040310 p.Thr132Asn missense_variant 0.41
clpC1 4040312 c.393G>C synonymous_variant 0.41
clpC1 4040315 p.Glu130Asp missense_variant 0.4
clpC1 4040318 c.387C>T synonymous_variant 0.41
clpC1 4040336 c.369G>C synonymous_variant 0.47
clpC1 4040354 c.351A>G synonymous_variant 0.31
clpC1 4040357 c.348T>C synonymous_variant 0.24
clpC1 4040363 c.342A>C synonymous_variant 0.26
clpC1 4040369 c.336C>G synonymous_variant 0.23
clpC1 4040375 c.330G>C synonymous_variant 0.23
clpC1 4040644 c.61A>C synonymous_variant 0.2
clpC1 4040648 c.57G>A synonymous_variant 0.19
clpC1 4040669 c.36C>T synonymous_variant 0.14
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 1.0
embA 4245786 p.Ala852Thr missense_variant 1.0
embB 4246205 c.-309A>G upstream_gene_variant 0.13
embB 4246235 c.-279G>A upstream_gene_variant 0.13
embB 4246256 c.-258G>T upstream_gene_variant 0.12
whiB6 4338595 c.-75delG upstream_gene_variant 1.0