EBG00000313339 - n.1015C>T
Drug resistance types
24 Sensitive
33 RR-TB
20 HR-TB
39 MDR-TB
24 Pre-XDR-TB
0 XDR-TB
145 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 60 |
| lineage4.1.1.3 | 1 |
| lineage4.8 | 49 |
| lineage2;lineage4 | 1 |
| lineage4.9 | 32 |
| lineage4.1.2.1 | 14 |
| lineage4.2.1 | 4 |
| 3 | |
| lineage4.1;lineage4.9 | 1 |
| lineage4.3.3 | 12 |
| lineage4.1.3 | 2 |
| lineage4.3.4.2 | 3 |
| lineage2.2;lineage4 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.5 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage2.2.2 | 6 |
| lineage4.1.2 | 2 |
| lineage3 | 9 |
| lineage5.1.1 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.3.4.2.1 | 5 |
| lineage4.2.1.1 | 2 |
| La3;lineage4.9 | 8 |
| La1.7;lineage3.1;lineage4 | 1 |
| La1.8.1 | 3 |
| lineage5 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage4.7 | 3 |
| lineage4.8.1 | 3 |
| lineage4.1.1.1 | 4 |
| lineage4.4.1.1.1 | 3 |
| lineage3.1.1 | 5 |
| lineage4.2.2.2 | 3 |
| lineage3.1.2.1 | 3 |
| lineage1.1.3.1 | 2 |
| lineage4.1 | 1 |
| lineage4.3 | 1 |
| lineage4.4.2 | 3 |
| lineage2.2.1.1 | 2 |
| lineage3.1.2.2 | 2 |
| lineage4.3.4.1 | 2 |
| lineage4.3.1.1 | 2 |
| lineage1.2.1.1 | 1 |
| lineage4 | 1 |
| lineage4.6.5 | 1 |
| lineage2.2.1;lineage2.2.2 | 1 |
| lineage3;lineage4 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.3.4.2;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.3.2 | 2 |
| lineage1.2.1.2.1 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La3;lineage4 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 285 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR18002980 | Other | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | ERR4818691 | Other | lineage4.8 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR18002908 | Other | lineage2.2.1 | None | ERR3797081 | Sensitive | lineage4.9 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | SRR8692905 | Sensitive | None | SRR7131216 | Other | lineage4.1.2.1 | None | ERR10796629 | Other | lineage4.1;lineage4.9 | None | ERR4815452 | Other | lineage4.3.3 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR8692863 | Other | lineage2.2;lineage4 | None | ERR867544 | Other | lineage4.9 | None | ERR4817915 | Other | lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4816856 | Other | lineage4.1.2.1 | None | ERR10796560 | Other | lineage4.9 | None | ERR4819593 | Sensitive | lineage4.5 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR22048536 | Other | lineage4.3.3 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | ERR4819198 | Other | lineage2.2.1 | None | ERR4821143 | Other | lineage4.9 | None | ERR4817874 | Other | lineage3 | None | SRR18002974 | Other | lineage2.2.1 | None | ERR751345 | Other | lineage5.1.1 | None | SRR18002933 | Other | lineage2.2.1 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR978756 | Other | lineage4.8 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046208 | Other | lineage4.8 | None | SRR7131229 | Other | lineage4.1.2.1 | None | ERR10796626 | Other | lineage4.1.2.1 | None | SRR7131123 | Other | lineage4.8 | None | SRR6046117 | Other | lineage4.9 | None | ERR4818050 | Sensitive | lineage4.6.2.2 | None | ERR867555 | Other | lineage3 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR4819002 | HR-TB | lineage4.8 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | SRR7070521 | Other | lineage4.2.1.1 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR18002937 | Other | lineage2.2.1 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | SRR8692887 | Other | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR3797019 | Other | La1.8.1 | None | SRR7070293 | Other | lineage4.8 | None | SRR6046020 | Other | lineage3 | None | SRR19304104 | Other | lineage4.8 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4816967 | Other | lineage5 | None | ERR4821811 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR3675582 | Other | lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR12062542 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283032 | Other | lineage4.9 | None | SRR6046359 | Other | lineage4.7 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR7070087 | Other | lineage4.8.1 | None | SRR11342643 | MDR-TB | lineage4.1.1.1 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | ERR4817189 | Other | lineage4.7 | None | ERR4829337 | Sensitive | lineage4.8 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR1023509 | Other | lineage4.9 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | ERR10796578 | Other | lineage2.2.1 | None | SRR16058249 | Sensitive | lineage4.2.2.2 | None | SRR18002964 | Other | lineage2.2.1 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR18003033 | Other | lineage2.2.1 | None | ERR978735 | Other | lineage4.8 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4814617 | Other | lineage1.1.3.1 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | SRR7069074 | Other | lineage3 | None | ERR4815502 | Other | lineage4.1 | None | ERR10796566 | Other | lineage4.9 | None | ERR9117760 | HR-TB | lineage4.3 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR19303899 | Other | lineage3 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SRR18002872 | Pre-XDR-TB | lineage2.2.1 | None | SRR7070134 | Other | lineage3.1.1 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | SRR11342646 | HR-TB | lineage3 | None | ERR3797079 | Sensitive | lineage4.9 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR12062533 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR18002956 | Other | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR19303907 | Other | lineage4.8 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR6046343 | Other | lineage2.2.1 | None | ERR978727 | Other | lineage4.8 | None | ERR4817398 | Other | lineage3.1.1 | None | SRR7069097 | Other | lineage3.1.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR4821286 | Other | lineage4.8 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR978751 | Other | lineage4.8 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR4816690 | Other | None | ERR4820151 | Other | lineage4.8 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR7068875 | Other | lineage3.1.2.2 | None | ERR4815780 | MDR-TB | lineage4.1.3 | None | SRR7131075 | Other | lineage4.8 | None | ERR10796562 | Other | lineage4.3.4.1 | None | SRR14296220 | Other | La1.8.1 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | SRR3675265 | Other | lineage4 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | ERR4814745 | Other | lineage4.6.5 | None | SRR18002876 | MDR-TB | lineage2.2.1;lineage2.2.2 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | SRR7070320 | Other | lineage4.8 | None | ERR10796634 | Other | lineage4.7 | None | ERR1665404 | Pre-XDR-TB | lineage2.2.1 | None | ERR978752 | Other | lineage4.8 | None | ERR867575 | Other | lineage4.9 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | SRR11972369 | Pre-XDR-TB | lineage2.2.1 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR867567 | RR-TB | lineage3 | None | ERR978762 | Other | lineage4.8 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR3675230 | Other | lineage3;lineage4 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR6045516 | Other | lineage3.1.1 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR11349187 | Pre-XDR-TB | lineage4.8.1 | None | ERR4818570 | Other | lineage4.3.3 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR6044841 | Other | lineage4.9 | None | SRR18002945 | Other | lineage2.2.1 | None | ERR867572 | Other | lineage4.9 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | SRR3675509 | Other | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | SRR7070419 | Other | lineage3 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | ERR10796631 | Other | lineage4.3.4.2;lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | ERR4820075 | Other | lineage4.1.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR11342676 | HR-TB | lineage4.6.2.2 | None | SRR6044835 | Other | lineage4.9 | None | ERR4818407 | Other | lineage4.3.2 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR18002987 | Other | lineage2.2.1 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | SRR7070144 | Other | lineage4.8 | None | SRR18003023 | Other | lineage2.2.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR978757 | RR-TB | lineage4.8 | None | SRR9971197 | MDR-TB | lineage4.4.1.1.1 | None | ERR10796635 | Other | lineage4.8 | None | ERR867521 | MDR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR978734 | RR-TB | lineage4.8 | None | SRR9971372 | MDR-TB | lineage4.1.1.1 | None | ERR978694 | Other | lineage4.8 | None | SRR6045909 | Other | lineage4.8.1 | None | SRR7069839 | Other | lineage4.8 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR10796592 | Other | lineage4.9 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | SRR19303805 | Sensitive | lineage4.8 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | ERR4821214 | Other | lineage1.2.1.2.1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | ERR978755 | RR-TB | lineage4.8 | None | ERR978761 | Other | lineage4.8 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | SRR7069347 | Other | lineage4.1.2.1 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | ERR4819772 | Other | lineage1.1.3.1 | None | ERR3283028 | Other | La3;lineage4 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR21727760 | Other | lineage2.2.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR11342669 | Other | lineage4.8 | None | SRR6045957 | Other | lineage4.9 | None | ERR6866241 | Other | lineage4.3.2 | None | SRR7069800 | Other | lineage3.1.2.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR867538 | Other | lineage4.2.2.2 | None | ERR10796581 | Other | lineage4.1.2 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | SRR7070535 | HR-TB | lineage4.1.2.1 | None | SRR19303796 | Other | lineage4.3.3 | None | SRR7131230 | HR-TB | lineage4.3.4.2 | None | SRR11342686 | MDR-TB | lineage4.8 | None | ERR978748 | Other | lineage4.8 | None | SRR3675389 | Other | lineage4.9 | None | ERR4821704 | Other | lineage4.3.3 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | SRR7069193 | Other | lineage4.3.1.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261233 | Sensitive | lineage3 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR4816270 | Other | lineage4.1.2.1 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR19303815 | Other | lineage4.8 | None | ERR978747 | Other | lineage4.8 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | SRR11342638 | MDR-TB | lineage4.4.1.1.1 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | SRR18002961 | Other | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None |
|---|
