TB-Profiler result

Run: ERR3806850
Summary

Run ID: ERR3806850

Sample name:

Date: 01-04-2023 03:27:37

Number of reads: 655457

Percentage reads mapped: 66.53

Strain: lineage4.1.2.1

Drug-resistance: HR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.1 Euro-American T;X;H None 0.98
lineage4.1.2 Euro-American T;H None 1.0
lineage4.1.2.1 Euro-American (Haarlem) T1;H1 RD182 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
gyrB 6738 p.Thr500Asn missense_variant 0.17 ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin
katG 2153909 p.Asp735Asn missense_variant 0.12 isoniazid
katG 2155168 p.Ser315Thr missense_variant 1.0 isoniazid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6178 c.939C>T synonymous_variant 0.3
gyrB 6181 c.942C>T synonymous_variant 0.32
gyrB 6184 c.945C>G synonymous_variant 0.3
gyrB 6193 c.954G>A synonymous_variant 0.31
gyrB 6203 p.Ser322Ala missense_variant 0.3
gyrB 6214 c.975G>C synonymous_variant 0.31
gyrB 6215 p.Ser326Thr missense_variant 0.28
gyrB 6223 c.984G>C synonymous_variant 0.26
gyrB 6234 c.995_996insGCGCGA disruptive_inframe_insertion 0.25
gyrB 6238 c.1000_1005delGACCGC conservative_inframe_deletion 0.28
gyrB 6250 c.1011A>G synonymous_variant 0.26
gyrB 6259 p.Asp340Glu missense_variant 0.26
gyrB 6265 p.Asp342Glu missense_variant 0.26
gyrB 6266 p.Pro343Ala missense_variant 0.26
gyrB 6286 c.1047T>C synonymous_variant 0.31
gyrB 6292 c.1053G>T synonymous_variant 0.21
gyrB 6301 c.1062G>C synonymous_variant 0.25
gyrA 6304 c.-998C>G upstream_gene_variant 0.2
gyrA 6307 c.-995T>C upstream_gene_variant 0.21
gyrA 6310 c.-992G>C upstream_gene_variant 0.21
gyrB 6311 p.Ile358Val missense_variant 0.21
gyrB 6326 p.Ser363Arg missense_variant 0.27
gyrB 6329 p.Glu364Gln missense_variant 0.27
gyrA 6334 c.-968G>C upstream_gene_variant 0.27
gyrA 6362 c.-940T>C upstream_gene_variant 0.24
gyrA 6382 c.-920A>G upstream_gene_variant 0.19
gyrA 6388 c.-914T>C upstream_gene_variant 0.2
gyrA 6508 c.-794A>G upstream_gene_variant 0.2
gyrA 6511 c.-791A>T upstream_gene_variant 0.16
gyrA 6535 c.-767C>G upstream_gene_variant 0.14
gyrA 6551 c.-751T>C upstream_gene_variant 0.21
gyrA 6673 c.-629A>C upstream_gene_variant 0.14
gyrA 6676 c.-626T>G upstream_gene_variant 0.15
gyrA 6730 c.-572A>G upstream_gene_variant 0.19
gyrA 6742 c.-560A>G upstream_gene_variant 0.16
gyrA 6745 c.-557T>C upstream_gene_variant 0.16
gyrA 6763 c.-539G>C upstream_gene_variant 0.19
gyrA 6775 c.-527G>T upstream_gene_variant 0.14
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7397 c.96G>C synonymous_variant 0.14
gyrA 7406 c.105G>C synonymous_variant 0.14
gyrA 7412 c.111C>G synonymous_variant 0.19
gyrA 7421 c.120G>C synonymous_variant 0.18
gyrA 7424 c.123G>C synonymous_variant 0.18
gyrA 7427 c.126G>C synonymous_variant 0.18
gyrA 7433 c.132G>C synonymous_variant 0.19
gyrA 7442 c.141G>C synonymous_variant 0.18
gyrA 7451 c.150C>G synonymous_variant 0.2
gyrA 7457 c.156T>C synonymous_variant 0.21
gyrA 7463 c.162G>C synonymous_variant 0.2
gyrA 7472 c.171T>C synonymous_variant 0.2
gyrA 7475 c.174A>C synonymous_variant 0.22
gyrA 7480 p.Phe60Tyr missense_variant 0.32
gyrA 7484 c.183T>C synonymous_variant 0.29
gyrA 7490 c.189C>G synonymous_variant 0.29
gyrA 7496 c.195C>G synonymous_variant 0.27
gyrA 7506 c.205_207delAGCinsTCG synonymous_variant 0.29
gyrA 7523 c.222C>G synonymous_variant 0.32
gyrA 7526 c.225G>T synonymous_variant 0.35
gyrA 7532 c.231T>C synonymous_variant 0.35
gyrA 7547 c.246C>T synonymous_variant 0.3
gyrA 7565 c.264C>T synonymous_variant 0.31
gyrA 7571 c.270G>C synonymous_variant 0.36
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7592 c.291G>C synonymous_variant 0.38
gyrA 7622 c.321C>T synonymous_variant 0.27
gyrA 7631 c.330G>C synonymous_variant 0.28
gyrA 7637 c.336C>T synonymous_variant 0.3
gyrA 7658 c.357A>G synonymous_variant 0.26
gyrA 7661 c.360C>T synonymous_variant 0.23
gyrA 7664 c.363T>C synonymous_variant 0.23
gyrA 7670 c.369A>C synonymous_variant 0.22
gyrA 7671 p.Pro124Ala missense_variant 0.22
gyrA 7676 c.375G>C synonymous_variant 0.23
gyrA 7679 c.378G>C synonymous_variant 0.23
gyrA 7683 c.382_384delAGGinsCGT synonymous_variant 0.23
gyrA 7694 c.393A>G synonymous_variant 0.25
gyrA 7703 c.402G>C synonymous_variant 0.23
gyrA 7710 c.409T>C synonymous_variant 0.22
gyrA 7715 c.414G>C synonymous_variant 0.22
gyrA 7730 p.Arg143Ser missense_variant 0.15
gyrA 8121 c.820T>C synonymous_variant 0.18
gyrA 8129 c.828T>C synonymous_variant 0.17
gyrA 8156 c.855T>C synonymous_variant 0.22
gyrA 8168 c.867A>G synonymous_variant 0.17
gyrA 8174 c.873C>G synonymous_variant 0.21
gyrA 8177 c.876A>C synonymous_variant 0.21
gyrA 8187 p.Leu296Ile missense_variant 0.14
gyrA 8191 p.Ala297Gly missense_variant 0.13
gyrA 8339 c.1038A>G synonymous_variant 0.14
gyrA 8340 p.Ala347Ser missense_variant 0.14
gyrA 8619 c.1318T>C synonymous_variant 0.17
gyrA 8624 c.1323G>T synonymous_variant 0.16
gyrA 8693 c.1392T>C synonymous_variant 0.17
gyrA 8696 c.1395G>C synonymous_variant 0.17
gyrA 8699 c.1398A>G synonymous_variant 0.17
gyrA 8711 c.1410A>C synonymous_variant 0.16
gyrA 8714 c.1413A>G synonymous_variant 0.16
gyrA 8731 p.Gly477Ala missense_variant 0.15
gyrA 8747 c.1446A>G synonymous_variant 0.15
gyrA 8751 p.Ala484Lys missense_variant 0.15
gyrA 8756 c.1455A>G synonymous_variant 0.15
gyrA 8757 p.Ile486Leu missense_variant 0.16
gyrA 8761 p.Val487Ala missense_variant 0.17
gyrA 8767 p.Arg489Lys missense_variant 0.2
gyrA 8769 p.His490Tyr missense_variant 0.21
gyrA 8783 c.1482G>T synonymous_variant 0.22
gyrA 8810 c.1509A>C synonymous_variant 0.35
gyrA 8818 p.Ser506Thr missense_variant 0.35
gyrA 8828 c.1527T>C synonymous_variant 0.3
gyrA 8829 c.1528T>C synonymous_variant 0.3
gyrA 8835 p.Ala512Gln missense_variant 0.3
gyrA 8852 c.1551T>C synonymous_variant 0.33
gyrA 8858 c.1557T>C synonymous_variant 0.36
gyrA 8867 c.1566A>G synonymous_variant 0.32
gyrA 8870 c.1569G>C synonymous_variant 0.32
gyrA 8873 c.1572A>C synonymous_variant 0.31
gyrA 8897 c.1596T>C synonymous_variant 0.42
gyrA 8900 c.1599G>C synonymous_variant 0.41
gyrA 8903 c.1602T>C synonymous_variant 0.41
gyrA 8912 c.1611G>A synonymous_variant 0.42
gyrA 8915 c.1614A>G synonymous_variant 0.42
gyrA 8924 c.1623C>T synonymous_variant 0.44
gyrA 8939 c.1638T>C synonymous_variant 0.38
gyrA 8942 c.1641G>C synonymous_variant 0.38
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.38
gyrA 8967 p.Ala556Asn missense_variant 0.4
gyrA 8990 c.1689C>G synonymous_variant 0.39
gyrA 8996 c.1695T>C synonymous_variant 0.36
gyrA 8998 p.Leu566Trp missense_variant 0.36
gyrA 9014 c.1713C>G synonymous_variant 0.33
gyrA 9017 c.1716C>G synonymous_variant 0.31
gyrA 9023 c.1722A>C synonymous_variant 0.31
gyrA 9029 c.1728T>G synonymous_variant 0.32
gyrA 9032 c.1731T>C synonymous_variant 0.32
gyrA 9051 c.1750T>C synonymous_variant 0.24
gyrA 9065 c.1764C>G synonymous_variant 0.22
gyrA 9071 c.1770G>C synonymous_variant 0.2
gyrA 9080 c.1779G>T synonymous_variant 0.21
gyrA 9092 c.1791C>G synonymous_variant 0.21
gyrA 9099 c.1798_1800delTTAinsCTG synonymous_variant 0.19
gyrA 9113 c.1812C>G synonymous_variant 0.14
gyrA 9119 c.1818A>G synonymous_variant 0.17
gyrA 9176 c.1875G>C synonymous_variant 0.16
gyrA 9182 c.1881T>C synonymous_variant 0.17
gyrA 9191 c.1890G>T synonymous_variant 0.17
gyrA 9200 c.1899A>G synonymous_variant 0.17
gyrA 9213 p.Thr638Ala missense_variant 0.16
gyrA 9227 c.1926C>G synonymous_variant 0.15
gyrA 9230 c.1929T>C synonymous_variant 0.19
gyrA 9236 c.1935G>C synonymous_variant 0.19
gyrA 9242 c.1941A>C synonymous_variant 0.19
gyrA 9248 c.1947G>C synonymous_variant 0.19
gyrA 9252 p.Val651Ile missense_variant 0.18
gyrA 9267 p.Asn656Gly missense_variant 0.16
gyrA 9275 c.1974G>A synonymous_variant 0.16
gyrA 9278 c.1977G>C synonymous_variant 0.17
gyrA 9287 c.1986G>C synonymous_variant 0.15
gyrA 9296 c.1995T>C synonymous_variant 0.17
gyrA 9299 c.1998G>C synonymous_variant 0.17
gyrA 9304 p.Gly668Glu missense_variant 1.0
gyrA 9308 p.Asp669Glu missense_variant 0.16
gyrA 9323 c.2022C>G synonymous_variant 0.14
gyrA 9326 c.2025G>C synonymous_variant 0.14
fgd1 491591 p.Lys270Met missense_variant 1.0
mshA 575679 p.Asn111Ser missense_variant 1.0
rpoB 760115 c.309C>T synonymous_variant 0.96
rpoB 760382 c.576G>C synonymous_variant 0.14
rpoB 760400 c.594G>C synonymous_variant 0.14
rpoB 760424 c.618C>G synonymous_variant 0.19
rpoB 760430 c.624T>C synonymous_variant 0.2
rpoB 760457 c.651C>T synonymous_variant 0.17
rpoB 760460 c.654G>C synonymous_variant 0.17
rpoB 760475 c.669A>G synonymous_variant 0.17
rpoB 760481 c.675G>C synonymous_variant 0.17
rpoB 760484 c.678A>G synonymous_variant 0.17
rpoB 760487 c.681G>C synonymous_variant 0.17
rpoB 760508 c.702G>A synonymous_variant 0.14
rpoB 760511 c.705G>C synonymous_variant 0.14
rpoB 760522 p.Ser239Asn missense_variant 0.13
rpoB 761051 c.1245G>T synonymous_variant 0.15
rpoB 761054 c.1248G>C synonymous_variant 0.15
rpoB 761057 c.1251G>C synonymous_variant 0.15
rpoB 761060 c.1254C>G synonymous_variant 0.15
rpoB 761063 c.1257C>G synonymous_variant 0.14
rpoB 761102 c.1296A>G synonymous_variant 0.14
rpoB 761132 c.1326G>T synonymous_variant 0.16
rpoB 761150 c.1344A>T synonymous_variant 0.16
rpoB 761165 c.1359G>C synonymous_variant 0.19
rpoB 761171 c.1365C>T synonymous_variant 0.2
rpoB 761180 c.1374A>C synonymous_variant 0.21
rpoB 761189 c.1383T>C synonymous_variant 0.21
rpoB 761195 c.1389G>C synonymous_variant 0.2
rpoB 761198 c.1392G>C synonymous_variant 0.21
rpoB 761213 c.1407G>C synonymous_variant 0.21
rpoB 761217 p.Pro471Ser missense_variant 0.2
rpoB 761234 c.1428G>C synonymous_variant 0.17
rpoB 761249 c.1443A>G synonymous_variant 0.15
rpoB 761258 c.1452G>A synonymous_variant 0.16
rpoB 761261 c.1455G>C synonymous_variant 0.15
rpoB 761306 c.1500C>G synonymous_variant 0.17
rpoB 761936 c.2130C>T synonymous_variant 0.14
rpoB 761969 c.2163G>A synonymous_variant 0.17
rpoB 761999 c.2193G>C synonymous_variant 0.19
rpoB 762002 c.2196C>G synonymous_variant 0.19
rpoB 762003 p.Asn733Gln missense_variant 0.19
rpoB 762014 c.2208C>G synonymous_variant 0.19
rpoB 762017 c.2211A>G synonymous_variant 0.19
rpoB 762018 p.Glu738Gln missense_variant 0.19
rpoB 762026 c.2220G>T synonymous_variant 0.19
rpoB 762029 c.2223C>G synonymous_variant 0.19
rpoB 762032 c.2226C>G synonymous_variant 0.18
rpoB 762035 c.2229G>C synonymous_variant 0.17
rpoB 762053 c.2247T>C synonymous_variant 0.25
rpoB 762065 c.2259T>C synonymous_variant 0.24
rpoB 762083 c.2277T>C synonymous_variant 0.22
rpoB 762086 c.2280G>C synonymous_variant 0.21
rpoB 762101 c.2295C>G synonymous_variant 0.23
rpoB 762114 p.Ile770Val missense_variant 0.25
rpoB 762131 c.2325C>G synonymous_variant 0.22
rpoB 762134 c.2328C>T synonymous_variant 0.22
rpoB 762140 c.2334G>C synonymous_variant 0.22
rpoB 762143 c.2337T>C synonymous_variant 0.22
rpoB 762149 c.2343G>C synonymous_variant 0.22
rpoB 762158 c.2352G>C synonymous_variant 0.26
rpoB 762167 c.2361T>C synonymous_variant 0.23
rpoB 762176 c.2370T>C synonymous_variant 0.26
rpoB 762185 c.2379G>C synonymous_variant 0.22
rpoB 762239 c.2433G>A synonymous_variant 0.25
rpoB 762245 c.2439G>C synonymous_variant 0.25
rpoB 762249 c.2443C>T synonymous_variant 0.26
rpoB 762278 c.2472C>T synonymous_variant 0.2
rpoB 762284 c.2478G>C synonymous_variant 0.18
rpoC 762374 c.-996G>C upstream_gene_variant 0.2
rpoC 762395 c.-975G>C upstream_gene_variant 0.19
rpoC 762398 c.-972T>C upstream_gene_variant 0.17
rpoC 762401 c.-969G>C upstream_gene_variant 0.17
rpoC 762404 c.-966T>C upstream_gene_variant 0.17
rpoC 762410 c.-960T>C upstream_gene_variant 0.19
rpoC 762416 c.-954A>G upstream_gene_variant 0.18
rpoC 762443 c.-927G>C upstream_gene_variant 0.19
rpoC 762452 c.-918G>C upstream_gene_variant 0.19
rpoC 762470 c.-900G>C upstream_gene_variant 0.2
rpoB 762489 p.Val895Ile missense_variant 0.15
rpoB 762507 p.Leu901Ile missense_variant 0.13
rpoB 762795 p.Asp997Asn missense_variant 0.14
rpoB 762814 p.Met1003Thr missense_variant 0.17
rpoC 762818 c.-552C>G upstream_gene_variant 0.17
rpoC 762827 c.-543G>T upstream_gene_variant 0.17
rpoC 762830 c.-540C>T upstream_gene_variant 0.17
rpoC 762831 c.-539_-538delAGinsTC upstream_gene_variant 0.17
rpoC 762863 c.-507T>C upstream_gene_variant 0.18
rpoB 762879 p.Met1025Leu missense_variant 0.19
rpoC 762911 c.-459C>T upstream_gene_variant 0.16
rpoC 762917 c.-453C>G upstream_gene_variant 0.17
rpoC 762920 c.-450C>T upstream_gene_variant 0.17
rpoC 762923 c.-447C>G upstream_gene_variant 0.17
rpoC 762929 c.-441G>T upstream_gene_variant 0.19
rpoC 762959 c.-411G>C upstream_gene_variant 0.26
rpoC 762962 c.-408C>T upstream_gene_variant 0.24
rpoC 762995 c.-375G>T upstream_gene_variant 0.16
rpoC 763070 c.-300T>C upstream_gene_variant 0.15
rpoC 763082 c.-288C>T upstream_gene_variant 0.15
rpoC 763088 c.-282C>G upstream_gene_variant 0.14
rpoC 763094 c.-276G>C upstream_gene_variant 0.14
rpoC 763115 c.-255T>C upstream_gene_variant 0.19
rpoC 763127 c.-243G>C upstream_gene_variant 0.18
rpoC 763136 c.-234C>T upstream_gene_variant 0.17
rpoC 763142 c.-228C>G upstream_gene_variant 0.18
rpoC 763495 c.126G>A synonymous_variant 0.15
rpoC 763528 c.159G>A synonymous_variant 0.2
rpoC 763546 c.177A>G synonymous_variant 0.2
rpoC 763570 c.201G>C synonymous_variant 0.2
rpoC 763573 c.204G>C synonymous_variant 0.2
rpoC 763589 p.Ile74Val missense_variant 0.22
rpoC 763603 c.234C>T synonymous_variant 0.24
rpoC 763618 c.249C>T synonymous_variant 0.21
rpoC 763642 c.273G>C synonymous_variant 0.15
rpoC 763660 c.291T>G synonymous_variant 0.17
rpoC 763669 c.300C>G synonymous_variant 0.16
rpoC 763696 c.327T>C synonymous_variant 0.14
rpoC 763699 c.330G>T synonymous_variant 0.14
rpoC 763702 c.333C>G synonymous_variant 0.14
rpoC 763708 c.339G>C synonymous_variant 0.14
rpoC 763709 c.340C>T synonymous_variant 0.14
rpoC 763714 c.345G>C synonymous_variant 0.14
rpoC 763717 c.348T>C synonymous_variant 0.14
rpoC 764239 c.870T>G synonymous_variant 0.16
rpoC 764254 c.885G>T synonymous_variant 0.19
rpoC 764263 c.894G>C synonymous_variant 0.18
rpoC 764266 c.897T>C synonymous_variant 0.19
rpoC 764269 c.900G>C synonymous_variant 0.19
rpoC 764278 c.909A>G synonymous_variant 0.17
rpoC 764284 c.915G>C synonymous_variant 0.17
rpoC 764296 c.927G>C synonymous_variant 0.16
rpoC 764320 c.951C>T synonymous_variant 0.21
rpoC 764353 c.984G>T synonymous_variant 0.24
rpoC 764359 c.990C>G synonymous_variant 0.25
rpoC 764365 c.996C>T synonymous_variant 0.21
rpoC 764371 c.1002G>C synonymous_variant 0.21
rpoC 764377 c.1008C>G synonymous_variant 0.21
rpoC 764380 c.1011G>C synonymous_variant 0.21
rpoC 764387 c.1018T>C synonymous_variant 0.23
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.19
rpoC 764410 c.1041G>C synonymous_variant 0.24
rpoC 764429 c.1060C>T synonymous_variant 0.28
rpoC 764434 c.1065A>G synonymous_variant 0.28
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 0.28
rpoC 764446 c.1077T>C synonymous_variant 0.25
rpoC 764449 c.1080G>C synonymous_variant 0.24
rpoC 764458 c.1089G>C synonymous_variant 0.29
rpoC 764461 c.1092A>G synonymous_variant 0.29
rpoC 764485 c.1116G>C synonymous_variant 0.3
rpoC 764497 c.1128A>G synonymous_variant 0.24
rpoC 764500 c.1131C>G synonymous_variant 0.26
rpoC 764506 c.1137C>T synonymous_variant 0.31
rpoC 764521 c.1152T>C synonymous_variant 0.31
rpoC 764527 c.1158C>T synonymous_variant 0.34
rpoC 764530 c.1161C>T synonymous_variant 0.31
rpoC 764539 c.1170C>G synonymous_variant 0.27
rpoC 764548 c.1179G>C synonymous_variant 0.26
rpoC 764575 c.1206T>G synonymous_variant 0.25
rpoC 764581 c.1212T>C synonymous_variant 0.27
rpoC 764605 c.1236G>C synonymous_variant 0.23
rpoC 764611 c.1242G>T synonymous_variant 0.23
rpoC 764623 c.1254C>G synonymous_variant 0.24
rpoC 764626 c.1257C>T synonymous_variant 0.24
rpoC 764632 c.1263T>C synonymous_variant 0.22
rpoC 764650 c.1281G>T synonymous_variant 0.24
rpoC 764662 c.1293G>C synonymous_variant 0.22
rpoC 764692 c.1323C>T synonymous_variant 0.19
rpoC 764701 c.1332C>G synonymous_variant 0.18
rpoC 764707 c.1338G>C synonymous_variant 0.17
rpoC 764713 c.1344G>C synonymous_variant 0.17
rpoC 764716 c.1347G>C synonymous_variant 0.17
rpoC 764746 c.1377G>T synonymous_variant 0.14
rpoC 764752 c.1383G>C synonymous_variant 0.17
rpoC 764758 c.1389C>G synonymous_variant 0.17
rpoC 764764 c.1395T>C synonymous_variant 0.15
rpoC 764797 c.1428G>C synonymous_variant 0.14
rpoC 764803 c.1434C>T synonymous_variant 0.14
rpoC 764827 c.1458G>C synonymous_variant 0.15
rpoC 764875 c.1506C>T synonymous_variant 0.13
rpoC 764913 p.Met515Lys missense_variant 0.14
rpoC 764935 c.1566T>C synonymous_variant 0.16
rpoC 764948 c.1579T>C synonymous_variant 0.16
rpoC 765007 c.1638T>G synonymous_variant 0.14
rpoC 765011 p.Ser548Trp missense_variant 0.14
rpoC 765016 c.1647C>G synonymous_variant 0.15
rpoC 765019 c.1650A>G synonymous_variant 0.15
rpoC 765034 c.1665T>G synonymous_variant 0.15
rpoC 765040 c.1671T>C synonymous_variant 0.15
rpoC 765041 c.1672T>C synonymous_variant 0.15
rpoC 765052 c.1683C>G synonymous_variant 0.15
rpoC 765055 c.1686C>G synonymous_variant 0.15
rpoC 765076 c.1707A>G synonymous_variant 0.15
rpoC 765079 c.1710T>G synonymous_variant 0.15
rpoC 765082 c.1713G>C synonymous_variant 0.15
rpoC 765085 c.1716T>C synonymous_variant 0.14
rpoC 765103 c.1734G>T synonymous_variant 0.15
rpoC 765150 p.Gly594Glu missense_variant 1.0
rpoC 766801 c.3432C>A synonymous_variant 0.15
rpoC 766804 c.3435A>G synonymous_variant 0.15
rpoC 766837 c.3468G>C synonymous_variant 0.18
rpoC 766858 c.3489C>T synonymous_variant 0.14
rpoC 766900 c.3531T>C synonymous_variant 0.14
rpoC 766911 p.Ile1181Thr missense_variant 0.14
rpoC 766915 p.Asp1182Glu missense_variant 0.14
rpoC 766919 p.Ala1184Thr missense_variant 0.14
rpoC 766931 p.Ala1188Thr missense_variant 0.15
rpoC 766942 c.3573C>T synonymous_variant 0.15
rpoC 766945 c.3576A>C synonymous_variant 0.15
rpoC 766960 c.3591C>T synonymous_variant 0.19
rpoC 766963 c.3594T>C synonymous_variant 0.16
rpoC 766978 c.3609C>A synonymous_variant 0.21
rpoC 766996 c.3627C>T synonymous_variant 0.22
rpoC 767008 c.3639G>A synonymous_variant 0.18
rpoC 767020 c.3651C>G synonymous_variant 0.22
rpoC 767092 c.3723C>T synonymous_variant 0.26
rpoC 767098 c.3729T>C synonymous_variant 0.28
rpoC 767104 c.3735C>G synonymous_variant 0.26
rpoC 767105 p.Asn1246Gln missense_variant 0.26
rpoC 767119 c.3750A>G synonymous_variant 0.25
rpoC 767134 c.3765C>T synonymous_variant 0.24
rpoC 767138 c.3769C>T synonymous_variant 0.24
rpoC 767149 c.3780C>T synonymous_variant 0.26
rpoC 767155 c.3786C>G synonymous_variant 0.23
rpoC 767158 c.3789T>C synonymous_variant 0.23
rpoC 767167 c.3798C>G synonymous_variant 0.26
rpoC 767180 p.Ala1271Gln missense_variant 0.29
rpoC 767185 c.3816G>C synonymous_variant 0.28
rpoC 767191 c.3822C>G synonymous_variant 0.28
rpoC 767200 c.3831G>A synonymous_variant 0.29
rpoC 767221 c.3852C>G synonymous_variant 0.28
rpoC 767230 c.3861G>T synonymous_variant 0.21
rpoC 767233 c.3864T>C synonymous_variant 0.21
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775955 p.Ile842Met missense_variant 0.14
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781572 p.Gln5Lys missense_variant 0.13
rpsL 781628 c.69T>G synonymous_variant 0.17
rpsL 781631 c.72G>C synonymous_variant 0.16
rpsL 781658 c.99A>G synonymous_variant 0.24
rpsL 781682 c.123T>C synonymous_variant 0.19
rpsL 781685 c.126G>C synonymous_variant 0.2
rpsL 781706 c.147T>G synonymous_variant 0.22
rpsL 781709 c.150G>C synonymous_variant 0.22
rpsL 781715 c.156T>C synonymous_variant 0.21
rpsL 781721 c.162C>T synonymous_variant 0.17
rpsL 781728 c.169T>C synonymous_variant 0.17
rpsL 781736 c.177T>C synonymous_variant 0.2
rpsL 781742 c.183C>T synonymous_variant 0.19
rpsL 781754 c.195G>C synonymous_variant 0.2
rpsL 781760 c.201T>C synonymous_variant 0.2
rpsL 781763 c.204C>G synonymous_variant 0.18
rpsL 781766 c.207C>T synonymous_variant 0.18
rpsL 781769 c.210G>A synonymous_variant 0.18
rpsL 781802 c.243G>C synonymous_variant 0.19
rpsL 781808 c.249C>T synonymous_variant 0.19
rpsL 781814 c.255C>T synonymous_variant 0.19
rpsL 781817 c.258G>T synonymous_variant 0.19
rpsL 781829 c.270G>C synonymous_variant 0.24
rpsL 781832 c.273T>C synonymous_variant 0.25
rpsL 781859 c.300T>C synonymous_variant 0.24
rpsL 781865 c.306G>C synonymous_variant 0.23
rpsL 781868 c.309T>C synonymous_variant 0.23
rpsL 781871 c.312G>C synonymous_variant 0.23
rpsL 781892 c.333A>G synonymous_variant 0.19
rplC 800651 c.-158G>C upstream_gene_variant 0.17
rplC 800678 c.-131C>T upstream_gene_variant 0.17
rplC 800684 c.-125G>A upstream_gene_variant 0.17
rplC 800690 c.-119C>T upstream_gene_variant 0.16
rplC 800693 c.-116A>C upstream_gene_variant 0.16
rplC 800702 c.-107G>C upstream_gene_variant 0.16
rplC 800703 c.-106_-104delTTGinsCTT upstream_gene_variant 0.16
rplC 800715 c.-94A>C upstream_gene_variant 0.18
rplC 800720 c.-89T>C upstream_gene_variant 0.18
rplC 800744 c.-65G>C upstream_gene_variant 0.17
rplC 800745 c.-64_-62delCTCinsTTG upstream_gene_variant 0.17
rplC 800759 c.-50C>T upstream_gene_variant 0.19
rplC 800762 c.-47T>G upstream_gene_variant 0.19
rplC 800768 c.-41C>G upstream_gene_variant 0.17
fbiC 1304508 p.Glu526Asp missense_variant 0.16
fbiC 1304511 c.1581C>T synonymous_variant 0.16
fbiC 1304520 c.1590A>G synonymous_variant 0.15
fbiC 1304556 c.1626C>T synonymous_variant 0.15
fbiC 1304559 p.Glu543Asp missense_variant 0.15
fbiC 1304565 c.1635C>G synonymous_variant 0.16
fbiC 1304568 c.1638T>C synonymous_variant 0.15
fbiC 1304574 c.1644C>G synonymous_variant 0.15
fbiC 1304580 c.1650T>G synonymous_variant 0.15
fbiC 1304634 c.1704C>G synonymous_variant 0.16
fbiC 1304640 c.1710A>C synonymous_variant 0.16
fbiC 1304652 c.1722C>T synonymous_variant 0.17
fbiC 1304655 c.1725C>T synonymous_variant 0.16
fbiC 1304675 p.Gly582Asp missense_variant 0.16
fbiC 1304694 c.1764A>G synonymous_variant 0.15
fbiC 1304703 c.1773C>G synonymous_variant 0.14
fbiC 1304706 c.1776C>T synonymous_variant 0.14
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471922 n.78delT non_coding_transcript_exon_variant 0.17
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.16
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.17
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.17
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.37
rrs 1472019 n.174G>A non_coding_transcript_exon_variant 0.39
rrs 1472031 n.186G>C non_coding_transcript_exon_variant 0.39
rrs 1472033 n.188A>C non_coding_transcript_exon_variant 0.39
rrs 1472035 n.190G>T non_coding_transcript_exon_variant 0.39
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.38
rrs 1472041 n.196C>T non_coding_transcript_exon_variant 0.38
rrs 1472042 n.197T>G non_coding_transcript_exon_variant 0.38
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.41
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.43
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.4
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.36
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.36
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.44
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.41
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.42
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.42
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.42
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.44
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.43
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.56
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.55
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.43
rrs 1472672 n.830delT non_coding_transcript_exon_variant 0.54
rrs 1472847 n.1002G>C non_coding_transcript_exon_variant 0.27
rrs 1472848 n.1003T>G non_coding_transcript_exon_variant 0.27
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 0.27
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 0.27
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 0.27
rrs 1472858 n.1013G>T non_coding_transcript_exon_variant 0.25
rrs 1472859 n.1014G>C non_coding_transcript_exon_variant 0.26
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.26
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.56
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.55
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.46
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.45
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.45
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.47
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.48
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.48
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.48
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.48
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.48
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.49
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.33
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.25
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.27
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.28
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.17
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.16
rrl 1473743 n.86C>T non_coding_transcript_exon_variant 0.24
rrl 1473746 n.89T>C non_coding_transcript_exon_variant 0.28
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.31
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.36
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.37
rrl 1473815 n.158T>C non_coding_transcript_exon_variant 0.37
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.36
rrl 1473839 n.182G>T non_coding_transcript_exon_variant 0.34
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.26
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.3
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.3
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.25
rrl 1473922 n.265A>T non_coding_transcript_exon_variant 0.24
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.23
rrl 1473935 n.278C>T non_coding_transcript_exon_variant 0.16
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.16
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.16
rrl 1473945 n.288T>A non_coding_transcript_exon_variant 0.16
rrl 1473946 n.289A>T non_coding_transcript_exon_variant 0.16
rrl 1474022 n.365G>A non_coding_transcript_exon_variant 0.16
rrl 1474034 n.377G>A non_coding_transcript_exon_variant 0.17
rrl 1474045 n.388C>T non_coding_transcript_exon_variant 0.19
rrl 1474054 n.397T>C non_coding_transcript_exon_variant 0.21
rrl 1474065 n.408C>G non_coding_transcript_exon_variant 0.18
rrl 1474074 n.417C>T non_coding_transcript_exon_variant 0.18
rrl 1474077 n.420G>C non_coding_transcript_exon_variant 0.18
rrl 1474093 n.436G>A non_coding_transcript_exon_variant 0.14
rrl 1474094 n.437C>T non_coding_transcript_exon_variant 0.14
rrl 1474096 n.439C>T non_coding_transcript_exon_variant 0.14
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.14
rrl 1474104 n.448_452delTATCA non_coding_transcript_exon_variant 0.15
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 0.25
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.24
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.28
rrl 1474156 n.499G>A non_coding_transcript_exon_variant 0.31
rrl 1474163 n.506C>T non_coding_transcript_exon_variant 0.32
rrl 1474178 n.522dupC non_coding_transcript_exon_variant 0.21
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.21
rrl 1474183 n.527delC non_coding_transcript_exon_variant 0.21
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.31
rrl 1474306 n.649A>T non_coding_transcript_exon_variant 0.17
rrl 1474308 n.653_654delTG non_coding_transcript_exon_variant 0.21
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.21
rrl 1474376 n.719T>G non_coding_transcript_exon_variant 0.23
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.24
rrl 1474436 n.779T>G non_coding_transcript_exon_variant 0.14
rrl 1474447 n.790G>A non_coding_transcript_exon_variant 0.35
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.51
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.49
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.49
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.49
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.49
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 0.38
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.37
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 0.37
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 0.42
rrl 1474715 n.1060_1061insGACAAA non_coding_transcript_exon_variant 0.41
rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.44
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.39
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.42
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.36
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.33
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.29
rrl 1474945 n.1288C>T non_coding_transcript_exon_variant 0.19
rrl 1474950 n.1296_1297delCA non_coding_transcript_exon_variant 0.21
rrl 1474990 n.1333C>T non_coding_transcript_exon_variant 0.22
rrl 1474991 n.1334T>G non_coding_transcript_exon_variant 0.22
rrl 1474995 n.1338T>C non_coding_transcript_exon_variant 0.22
rrl 1474997 n.1340A>G non_coding_transcript_exon_variant 0.23
rrl 1474999 n.1342C>T non_coding_transcript_exon_variant 0.23
rrl 1475005 n.1348C>A non_coding_transcript_exon_variant 0.23
rrl 1475006 n.1349A>G non_coding_transcript_exon_variant 0.22
rrl 1475010 n.1353G>A non_coding_transcript_exon_variant 0.22
rrl 1475015 n.1358C>T non_coding_transcript_exon_variant 0.23
rrl 1475017 n.1360_1361insA non_coding_transcript_exon_variant 0.23
rrl 1475020 n.1363G>T non_coding_transcript_exon_variant 0.23
rrl 1475031 n.1374G>T non_coding_transcript_exon_variant 0.4
rrl 1475061 n.1404C>A non_coding_transcript_exon_variant 0.5
rrl 1475062 n.1405A>T non_coding_transcript_exon_variant 0.5
rrl 1475108 n.1451C>G non_coding_transcript_exon_variant 0.35
rrl 1475343 n.1686A>G non_coding_transcript_exon_variant 0.18
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.21
rrl 1475358 n.1701T>C non_coding_transcript_exon_variant 0.23
rrl 1475363 n.1706C>T non_coding_transcript_exon_variant 0.23
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.22
rrl 1475375 n.1718G>A non_coding_transcript_exon_variant 0.22
rrl 1475376 n.1719A>C non_coding_transcript_exon_variant 0.22
rrl 1475379 n.1722G>A non_coding_transcript_exon_variant 0.22
rrl 1475398 n.1741C>T non_coding_transcript_exon_variant 0.23
rrl 1475402 n.1746_1747delTA non_coding_transcript_exon_variant 0.21
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.35
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.36
rrl 1475430 n.1773T>G non_coding_transcript_exon_variant 0.36
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.38
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.41
rrl 1475480 n.1823A>G non_coding_transcript_exon_variant 0.41
rrl 1475487 n.1830C>T non_coding_transcript_exon_variant 0.38
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.35
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.33
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.32
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.29
rrl 1475602 n.1945G>T non_coding_transcript_exon_variant 0.17
rrl 1475603 n.1946G>C non_coding_transcript_exon_variant 0.17
rrl 1475604 n.1947A>C non_coding_transcript_exon_variant 0.17
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.17
rrl 1475612 n.1955G>C non_coding_transcript_exon_variant 0.17
rrl 1475615 n.1958C>G non_coding_transcript_exon_variant 0.17
rrl 1475616 n.1959A>G non_coding_transcript_exon_variant 0.17
rrl 1475618 n.1961C>A non_coding_transcript_exon_variant 0.17
rrl 1475620 n.1963T>A non_coding_transcript_exon_variant 0.17
rrl 1475637 n.1980T>G non_coding_transcript_exon_variant 0.17
rrl 1475638 n.1981C>G non_coding_transcript_exon_variant 0.17
rrl 1475639 n.1982C>G non_coding_transcript_exon_variant 0.17
rrl 1475643 n.1986C>G non_coding_transcript_exon_variant 0.17
rrl 1475647 n.1990G>C non_coding_transcript_exon_variant 0.21
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.2
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 0.41
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.38
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.58
rrl 1475989 n.2332T>A non_coding_transcript_exon_variant 0.58
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.42
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.42
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.42
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.42
rrl 1476088 n.2431A>T non_coding_transcript_exon_variant 0.5
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.56
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.56
rrl 1476105 n.2448G>C non_coding_transcript_exon_variant 0.56
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 0.56
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.56
rrl 1476114 n.2457T>C non_coding_transcript_exon_variant 0.55
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.55
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.51
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.5
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.5
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.56
rrl 1476251 n.2594T>G non_coding_transcript_exon_variant 0.5
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.48
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.51
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.53
rrl 1476583 n.2926G>C non_coding_transcript_exon_variant 0.31
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.3
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.27
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.28
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.33
rrl 1476665 n.3008T>C non_coding_transcript_exon_variant 0.24
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 0.24
rrl 1476674 n.3017T>C non_coding_transcript_exon_variant 0.22
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 0.19
rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 0.19
rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 0.19
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 0.18
rrl 1476723 n.3066T>A non_coding_transcript_exon_variant 0.19
rrl 1476726 n.3069A>G non_coding_transcript_exon_variant 0.19
inhA 1674304 p.Gln35Glu missense_variant 0.16
inhA 1674384 c.183C>G synonymous_variant 0.13
inhA 1674387 c.186A>G synonymous_variant 0.13
inhA 1674399 c.198A>G synonymous_variant 0.13
inhA 1674422 p.Leu74Ser missense_variant 0.17
inhA 1674429 c.228C>G synonymous_variant 0.17
inhA 1674432 c.231G>C synonymous_variant 0.17
inhA 1674435 c.234G>C synonymous_variant 0.15
inhA 1674443 p.Ala81Val missense_variant 0.15
inhA 1674450 c.249G>C synonymous_variant 0.17
inhA 1674534 c.333G>A synonymous_variant 0.2
inhA 1674542 p.Ala114Glu missense_variant 0.25
inhA 1674550 p.Ser117Ala missense_variant 0.19
inhA 1674573 c.372G>C synonymous_variant 0.2
inhA 1674576 c.375T>C synonymous_variant 0.17
inhA 1674582 c.381T>C synonymous_variant 0.23
inhA 1674585 c.384T>C synonymous_variant 0.23
inhA 1674589 p.Met130Leu missense_variant 0.27
inhA 1674600 c.399G>C synonymous_variant 0.24
inhA 1674619 p.Pro140Glu missense_variant 0.21
inhA 1674624 c.423A>C synonymous_variant 0.2
inhA 1674627 c.426T>C synonymous_variant 0.21
inhA 1674628 p.Ser143Gly missense_variant 0.21
inhA 1674669 c.468G>C synonymous_variant 0.18
inhA 1674702 c.501G>C synonymous_variant 0.18
inhA 1674703 c.502_504delTTGinsCTC synonymous_variant 0.18
inhA 1674718 c.517A>C synonymous_variant 0.18
inhA 1674750 c.549T>C synonymous_variant 0.16
inhA 1674756 c.555T>C synonymous_variant 0.16
inhA 1674759 c.558G>C synonymous_variant 0.15
inhA 1674771 c.570C>G synonymous_variant 0.18
inhA 1674780 c.579T>C synonymous_variant 0.17
inhA 1674789 c.588G>C synonymous_variant 0.19
inhA 1674795 c.594G>C synonymous_variant 0.21
inhA 1674801 c.600T>C synonymous_variant 0.18
inhA 1674804 c.603G>C synonymous_variant 0.18
inhA 1674819 c.618G>C synonymous_variant 0.17
inhA 1674828 p.Glu209Asp missense_variant 0.17
inhA 1674838 p.Ala213Gln missense_variant 0.14
inhA 1674846 p.Ile215Met missense_variant 0.14
inhA 1674858 c.657G>A synonymous_variant 0.14
inhA 1674870 c.669T>C synonymous_variant 0.15
rpsA 1833628 c.87G>C synonymous_variant 0.15
rpsA 1833664 c.123C>G synonymous_variant 0.19
rpsA 1833676 c.135A>G synonymous_variant 0.22
rpsA 1833685 c.144G>T synonymous_variant 0.24
rpsA 1833694 c.153G>C synonymous_variant 0.21
rpsA 1833697 c.156C>G synonymous_variant 0.21
rpsA 1833724 c.183C>T synonymous_variant 0.22
rpsA 1833727 c.186G>C synonymous_variant 0.22
rpsA 1833730 c.189C>T synonymous_variant 0.23
rpsA 1833733 c.192C>T synonymous_variant 0.23
rpsA 1833734 p.Ala65Ser missense_variant 0.23
rpsA 1833745 c.204G>T synonymous_variant 0.22
rpsA 1833787 c.246C>G synonymous_variant 0.16
rpsA 1833790 c.249T>C synonymous_variant 0.16
rpsA 1833793 c.252C>T synonymous_variant 0.16
rpsA 1833808 c.267G>C synonymous_variant 0.16
rpsA 1833811 c.270G>T synonymous_variant 0.16
rpsA 1833829 c.288A>G synonymous_variant 0.15
rpsA 1833832 c.291G>A synonymous_variant 0.16
rpsA 1833838 c.297G>C synonymous_variant 0.16
rpsA 1833841 c.300C>G synonymous_variant 0.16
rpsA 1833874 c.333T>C synonymous_variant 0.15
rpsA 1833894 p.Ala118Glu missense_variant 0.17
rpsA 1833949 c.408T>C synonymous_variant 0.17
rpsA 1833970 c.429G>C synonymous_variant 0.14
rpsA 1833976 c.435C>G synonymous_variant 0.15
rpsA 1833991 c.450C>A synonymous_variant 0.17
rpsA 1833997 c.456G>C synonymous_variant 0.16
rpsA 1834030 c.489C>G synonymous_variant 0.15
rpsA 1834069 c.528G>C synonymous_variant 0.14
rpsA 1834099 c.558C>G synonymous_variant 0.14
rpsA 1834108 c.567C>T synonymous_variant 0.14
rpsA 1834222 c.681T>C synonymous_variant 0.15
rpsA 1834249 c.708T>C synonymous_variant 0.16
rpsA 1834255 c.714C>G synonymous_variant 0.23
rpsA 1834261 c.720A>G synonymous_variant 0.23
rpsA 1834264 c.723G>C synonymous_variant 0.23
rpsA 1834279 c.738C>T synonymous_variant 0.3
rpsA 1834297 c.756C>T synonymous_variant 0.31
rpsA 1834303 c.762T>G synonymous_variant 0.29
rpsA 1834306 c.765T>C synonymous_variant 0.3
rpsA 1834330 c.789C>G synonymous_variant 0.32
rpsA 1834348 c.807T>C synonymous_variant 0.25
rpsA 1834361 c.820T>C synonymous_variant 0.26
rpsA 1834366 c.825A>G synonymous_variant 0.25
rpsA 1834396 c.855G>C synonymous_variant 0.26
rpsA 1834408 c.867C>T synonymous_variant 0.24
rpsA 1834411 c.870T>C synonymous_variant 0.26
rpsA 1834423 c.882G>T synonymous_variant 0.22
rpsA 1834432 c.891G>C synonymous_variant 0.21
rpsA 1834451 c.910T>C synonymous_variant 0.21
rpsA 1834468 c.927A>G synonymous_variant 0.24
rpsA 1834483 c.942G>A synonymous_variant 0.24
rpsA 1834489 c.948T>C synonymous_variant 0.23
rpsA 1834520 p.Ala327Ser missense_variant 0.21
rpsA 1834540 c.999G>C synonymous_variant 0.21
rpsA 1834543 c.1002C>G synonymous_variant 0.21
rpsA 1834546 c.1005T>C synonymous_variant 0.21
rpsA 1834554 c.1014_1015delTG frameshift_variant 0.24
rpsA 1834558 c.1017_1018insAG frameshift_variant 0.24
rpsA 1834606 c.1065C>T synonymous_variant 0.15
rpsA 1834609 c.1068T>C synonymous_variant 0.15
rpsA 1834612 c.1071G>C synonymous_variant 0.15
rpsA 1834619 c.1078T>C synonymous_variant 0.16
rpsA 1834622 c.1081_1083delTCGinsAGC synonymous_variant 0.16
rpsA 1834633 c.1092A>G synonymous_variant 0.15
rpsA 1834639 c.1098T>C synonymous_variant 0.17
rpsA 1834667 p.Ala376Ser missense_variant 0.15
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2155716 c.396T>C synonymous_variant 0.14
katG 2155722 c.390G>C synonymous_variant 0.15
katG 2155728 c.384G>C synonymous_variant 0.15
katG 2155743 c.369G>C synonymous_variant 0.14
katG 2155769 p.Ile115Val missense_variant 0.15
katG 2155785 c.327T>C synonymous_variant 0.15
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517917 c.-198G>C upstream_gene_variant 0.23
kasA 2517941 c.-174C>G upstream_gene_variant 0.22
kasA 2517950 c.-165C>G upstream_gene_variant 0.21
kasA 2517968 c.-147T>C upstream_gene_variant 0.14
kasA 2517980 c.-135C>T upstream_gene_variant 0.14
kasA 2517989 c.-126T>C upstream_gene_variant 0.17
kasA 2518076 c.-39C>T upstream_gene_variant 1.0
kasA 2518756 c.642G>C synonymous_variant 0.13
ribD 2986827 c.-12G>A upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
rpoA 3877728 c.780C>G synonymous_variant 0.16
rpoA 3877737 c.771G>C synonymous_variant 0.16
rpoA 3877764 c.744C>G synonymous_variant 0.15
rpoA 3877770 c.738A>G synonymous_variant 0.15
rpoA 3877776 c.732T>C synonymous_variant 0.16
rpoA 3877782 c.726T>C synonymous_variant 0.16
rpoA 3877785 c.723C>A synonymous_variant 0.16
rpoA 3878001 c.507A>G synonymous_variant 0.17
rpoA 3878010 c.498C>G synonymous_variant 0.17
rpoA 3878013 c.495T>C synonymous_variant 0.17
rpoA 3878019 c.489A>G synonymous_variant 0.17
rpoA 3878022 c.486T>C synonymous_variant 0.15
rpoA 3878025 c.483C>T synonymous_variant 0.15
rpoA 3878028 c.480G>C synonymous_variant 0.15
rpoA 3878031 c.477T>C synonymous_variant 0.15
rpoA 3878034 c.474A>G synonymous_variant 0.19
rpoA 3878046 c.462T>G synonymous_variant 0.2
rpoA 3878050 p.Arg153Lys missense_variant 0.2
rpoA 3878055 c.453A>G synonymous_variant 0.2
rpoA 3878061 c.447G>C synonymous_variant 0.21
rpoA 3878070 c.438T>C synonymous_variant 0.21
rpoA 3878073 c.435C>T synonymous_variant 0.21
rpoA 3878082 c.426T>C synonymous_variant 0.21
rpoA 3878103 c.405A>G synonymous_variant 0.14
rpoA 3878118 c.390T>C synonymous_variant 0.14
rpoA 3878127 c.381G>C synonymous_variant 0.18
rpoA 3878143 p.Gly122Asp missense_variant 0.25
rpoA 3878145 c.363C>G synonymous_variant 0.26
rpoA 3878154 c.354G>C synonymous_variant 0.24
rpoA 3878157 c.351C>G synonymous_variant 0.25
rpoA 3878160 c.348C>G synonymous_variant 0.25
rpoA 3878163 c.345C>T synonymous_variant 0.31
rpoA 3878172 c.336G>C synonymous_variant 0.33
rpoA 3878184 c.324C>T synonymous_variant 0.37
rpoA 3878193 c.315T>C synonymous_variant 0.33
rpoA 3878196 p.Glu104Ala missense_variant 0.33
rpoA 3878205 c.303T>C synonymous_variant 0.33
rpoA 3878217 c.291A>G synonymous_variant 0.38
rpoA 3878244 c.264G>A synonymous_variant 0.43
rpoA 3878256 c.252G>C synonymous_variant 0.45
rpoA 3878264 p.Ser82Gly missense_variant 0.48
rpoA 3878271 c.237T>C synonymous_variant 0.56
rpoA 3878283 p.Glu75Asp missense_variant 0.5
rpoA 3878292 c.216T>C synonymous_variant 0.47
rpoA 3878298 c.210A>G synonymous_variant 0.32
rpoA 3878310 c.198G>C synonymous_variant 0.24
rpoA 3878313 c.195G>C synonymous_variant 0.2
rpoA 3878322 c.186A>G synonymous_variant 0.18
rpoA 3878331 c.177A>C synonymous_variant 0.2
rpoA 3878337 c.171T>C synonymous_variant 0.21
rpoA 3878346 c.162T>C synonymous_variant 0.19
rpoA 3878358 c.150C>G synonymous_variant 0.19
rpoA 3878361 c.147G>A synonymous_variant 0.19
rpoA 3878364 c.144A>C synonymous_variant 0.17
rpoA 3878367 c.141C>G synonymous_variant 0.17
rpoA 3878370 c.138T>C synonymous_variant 0.17
rpoA 3878373 c.135G>C synonymous_variant 0.17
rpoA 3878385 c.123C>G synonymous_variant 0.17
rpoA 3878400 c.108T>C synonymous_variant 0.19
rpoA 3878403 c.105C>T synonymous_variant 0.17
rpoA 3878415 c.93C>T synonymous_variant 0.12
rpoA 3878454 c.54A>G synonymous_variant 0.13
rpoA 3878465 p.Thr15Ala missense_variant 0.14
rpoA 3878466 c.42C>G synonymous_variant 0.14
rpoA 3878469 c.39C>G synonymous_variant 0.14
rpoA 3878490 c.18C>A synonymous_variant 0.2
rpoA 3878496 c.12A>T synonymous_variant 0.25
clpC1 4038410 c.2295C>T synonymous_variant 0.14
clpC1 4038445 p.Ala754Thr missense_variant 0.14
clpC1 4038485 p.Gly740Lys missense_variant 0.15
clpC1 4038490 p.Ala739Ser missense_variant 0.15
clpC1 4038491 c.2214C>G synonymous_variant 0.15
clpC1 4038499 p.Ser736Gly missense_variant 0.16
clpC1 4038917 c.1788C>T synonymous_variant 0.16
clpC1 4038923 c.1782A>G synonymous_variant 0.16
clpC1 4038941 c.1764G>C synonymous_variant 0.15
clpC1 4039001 p.Asn568Glu missense_variant 0.16
clpC1 4039016 c.1689C>G synonymous_variant 0.15
clpC1 4039022 c.1683A>G synonymous_variant 0.18
clpC1 4039073 c.1632C>T synonymous_variant 0.18
clpC1 4039079 c.1626C>G synonymous_variant 0.18
clpC1 4039085 c.1620A>G synonymous_variant 0.2
clpC1 4039091 c.1614G>C synonymous_variant 0.21
clpC1 4039097 c.1608G>C synonymous_variant 0.19
clpC1 4039139 p.Glu522Val missense_variant 0.15
clpC1 4039142 c.1563A>G synonymous_variant 0.15
clpC1 4039145 c.1560G>C synonymous_variant 0.15
clpC1 4039169 p.Glu512Asp missense_variant 0.2
clpC1 4039178 c.1527G>C synonymous_variant 0.24
clpC1 4039183 c.1522T>C synonymous_variant 0.25
clpC1 4039187 c.1518G>T synonymous_variant 0.25
clpC1 4039190 c.1515C>G synonymous_variant 0.25
clpC1 4039208 c.1497C>G synonymous_variant 0.27
clpC1 4039217 c.1488G>C synonymous_variant 0.26
clpC1 4039244 c.1461G>C synonymous_variant 0.25
clpC1 4039274 c.1431G>C synonymous_variant 0.3
clpC1 4039286 c.1419T>G synonymous_variant 0.27
clpC1 4039292 c.1413C>T synonymous_variant 0.26
clpC1 4039295 c.1410A>G synonymous_variant 0.2
clpC1 4039310 c.1395A>G synonymous_variant 0.18
clpC1 4039313 c.1392C>G synonymous_variant 0.18
clpC1 4039319 c.1386T>G synonymous_variant 0.18
clpC1 4039322 c.1383T>C synonymous_variant 0.18
clpC1 4039328 c.1377A>C synonymous_variant 0.18
clpC1 4039337 c.1368A>G synonymous_variant 0.21
clpC1 4039391 c.1314T>C synonymous_variant 0.15
clpC1 4039409 c.1296T>C synonymous_variant 0.15
clpC1 4039415 p.Glu430Asp missense_variant 0.15
clpC1 4039610 c.1095G>T synonymous_variant 0.17
clpC1 4039616 c.1089G>C synonymous_variant 0.19
clpC1 4039622 c.1083C>T synonymous_variant 0.19
clpC1 4039646 c.1059G>A synonymous_variant 0.16
clpC1 4039649 c.1056G>C synonymous_variant 0.16
clpC1 4039652 c.1053G>C synonymous_variant 0.17
clpC1 4039661 c.1044T>C synonymous_variant 0.18
clpC1 4039670 c.1035G>C synonymous_variant 0.15
clpC1 4039682 c.1023C>G synonymous_variant 0.16
clpC1 4039691 c.1014G>C synonymous_variant 0.16
clpC1 4039694 c.1011G>C synonymous_variant 0.16
clpC1 4039724 c.981A>G synonymous_variant 0.17
clpC1 4039733 c.972G>C synonymous_variant 0.17
clpC1 4039748 c.957G>C synonymous_variant 0.15
clpC1 4039751 c.954A>G synonymous_variant 0.16
clpC1 4039952 c.753T>C synonymous_variant 0.14
clpC1 4039991 c.714G>C synonymous_variant 0.13
embC 4241168 c.1306C>T synonymous_variant 0.14
embC 4241179 c.1317G>C synonymous_variant 0.15
embC 4241195 p.Ser445Ala missense_variant 0.15
embC 4241602 p.Met580Ile missense_variant 0.18
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0