Rv0006 - c.360C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
30 Sensitive
3 RR-TB
30 HR-TB
10 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
24 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2 | 2 |
| lineage4.3.2.1 | 1 |
| La3;lineage4.9 | 4 |
| lineage4.9 | 42 |
| lineage4.2;lineage4.9 | 2 |
| M.canetti;lineage2.2 | 2 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.1.2.1 | 3 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La1.8.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage1.1.2 | 3 |
| lineage4.9;lineage9 | 2 |
| lineage3.1.2.2 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.6.2.2 | 2 |
| lineage5.2 | 2 |
| lineage4 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.8 | 1 |
| lineage3.1.2.1 | 1 |
| lineage3 | 2 |
| lineage1.1.3.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage3.1 | 1 |
| lineage2.2.1 | 1 |
| lineage1.2.2.2 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.7;lineage4.9 | 2 |
| 2 | |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.5 | 1 |
| La2;lineage4.9 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 99 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR13285192 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR1791747 | Other | La1.8.1 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR28409427 | Sensitive | lineage1.1.2 | None | ERR4798099 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR29096394 | Sensitive | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR9786525 | Other | lineage4 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9634265 | Sensitive | lineage4.3.4.2 | None | SRR6045371 | Other | lineage4.9 | None | ERR9786619 | Sensitive | lineage4.8 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR17832802 | HR-TB | lineage3 | None | ERR13285191 | Sensitive | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR26159035 | Sensitive | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR28351442 | HR-TB | lineage3.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR11252664 | Other | lineage2.2.1 | None | ERR1213948 | HR-TB | lineage1.2.2.2 | bd | SRR26399239 | Sensitive | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR13291658 | Sensitive | lineage1.1.2 | None | ERR3132241 | HR-TB | lineage1.2.2.2 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR8692887 | Other | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR9786843 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR29096710 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR9786526 | Other | lineage4.1 | None | ERR400326 | Other | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None |
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