TB-Profiler result

Run: ERR4798504
Summary

Run ID: ERR4798504

Sample name:

Date: 01-04-2023 08:25:16

Number of reads: 1995744

Percentage reads mapped: 66.37

Strain: lineage3

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
La1.7.1 M.bovis None None 0.08
lineage3 East-African-Indian CAS RD750 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
embB 4247580 p.Ala356Val missense_variant 0.23 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6127 c.888G>T synonymous_variant 0.15
gyrB 6172 c.933C>T synonymous_variant 0.23
gyrB 6190 c.951A>G synonymous_variant 0.22
gyrB 6214 c.975G>C synonymous_variant 0.22
gyrB 6238 c.999G>A synonymous_variant 0.2
gyrB 6242 p.Arg335Lys missense_variant 0.18
gyrB 6253 c.1014G>C synonymous_variant 0.18
gyrB 6265 c.1026C>T synonymous_variant 0.18
gyrB 6280 c.1041T>C synonymous_variant 0.21
gyrB 6286 c.1047T>C synonymous_variant 0.22
gyrB 6292 c.1053G>A synonymous_variant 0.21
gyrB 6298 c.1059C>G synonymous_variant 0.19
gyrB 6299 c.1060C>T synonymous_variant 0.18
gyrA 6307 c.-995T>G upstream_gene_variant 0.18
gyrA 6316 c.-986G>C upstream_gene_variant 0.2
gyrB 6326 p.Ser363Ala missense_variant 0.19
gyrA 6331 c.-971A>G upstream_gene_variant 0.19
gyrA 6358 c.-944C>G upstream_gene_variant 0.17
gyrA 6361 c.-941G>A upstream_gene_variant 0.19
gyrA 6362 c.-940_-938delTTGinsCTC upstream_gene_variant 0.19
gyrA 6382 c.-920A>G upstream_gene_variant 0.17
gyrB 6911 p.Asn558His missense_variant 0.18
gyrA 6931 c.-371A>G upstream_gene_variant 0.2
gyrA 6934 c.-368A>G upstream_gene_variant 0.2
gyrA 6949 c.-353A>G upstream_gene_variant 0.2
gyrA 6955 c.-347G>A upstream_gene_variant 0.21
gyrA 7099 c.-203G>A upstream_gene_variant 0.22
gyrA 7129 c.-173T>G upstream_gene_variant 0.18
gyrA 7132 c.-170T>G upstream_gene_variant 0.18
gyrA 7136 c.-166T>C upstream_gene_variant 0.18
gyrA 7141 c.-161T>C upstream_gene_variant 0.18
gyrA 7147 c.-155G>C upstream_gene_variant 0.18
gyrA 7153 c.-149G>T upstream_gene_variant 0.16
gyrA 7216 c.-86G>C upstream_gene_variant 0.15
gyrA 7225 c.-77T>C upstream_gene_variant 0.15
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7433 c.132G>C synonymous_variant 0.24
gyrA 7451 c.150C>G synonymous_variant 0.26
gyrA 7457 c.156T>C synonymous_variant 0.26
gyrA 7469 c.168C>G synonymous_variant 0.3
gyrA 7472 c.171T>C synonymous_variant 0.3
gyrA 7475 c.174A>G synonymous_variant 0.32
gyrA 7480 p.Phe60Tyr missense_variant 0.32
gyrA 7484 c.183T>C synonymous_variant 0.31
gyrA 7490 c.189C>G synonymous_variant 0.34
gyrA 7502 c.201C>T synonymous_variant 0.34
gyrA 7526 c.225G>T synonymous_variant 0.38
gyrA 7532 c.231T>C synonymous_variant 0.34
gyrA 7541 c.240C>G synonymous_variant 0.32
gyrA 7547 c.246C>T synonymous_variant 0.33
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7601 c.300C>G synonymous_variant 0.26
gyrA 7626 c.325C>T synonymous_variant 0.29
gyrA 7631 c.330G>C synonymous_variant 0.33
gyrA 7643 c.342C>T synonymous_variant 0.3
gyrA 7646 c.345C>T synonymous_variant 0.3
gyrA 7655 c.354G>C synonymous_variant 0.31
gyrA 7658 c.357A>G synonymous_variant 0.31
gyrA 7661 c.360C>T synonymous_variant 0.32
gyrA 7664 c.363T>C synonymous_variant 0.33
gyrA 7670 c.369A>G synonymous_variant 0.35
gyrA 7676 c.375G>C synonymous_variant 0.33
gyrA 7679 c.378G>C synonymous_variant 0.35
gyrA 7697 c.396C>G synonymous_variant 0.33
gyrA 7700 c.399G>C synonymous_variant 0.35
gyrA 7706 c.405C>G synonymous_variant 0.36
gyrA 7725 c.424C>T synonymous_variant 0.38
gyrA 7728 c.427_429delAGGinsCGC synonymous_variant 0.39
gyrA 7763 c.462T>C synonymous_variant 0.42
gyrA 7769 c.468C>T synonymous_variant 0.42
gyrA 7787 c.486G>A synonymous_variant 0.35
gyrA 7793 c.492G>A synonymous_variant 0.34
gyrA 7797 c.496_498delCTAinsTTG synonymous_variant 0.34
gyrA 7820 c.519G>C synonymous_variant 0.26
gyrA 7832 c.531G>T synonymous_variant 0.3
gyrA 7835 c.534A>G synonymous_variant 0.29
gyrA 7859 c.558A>C synonymous_variant 0.3
gyrA 7865 c.564T>C synonymous_variant 0.29
gyrA 7868 c.567C>T synonymous_variant 0.28
gyrA 7883 c.582G>C synonymous_variant 0.22
gyrA 7884 p.Arg195Gly missense_variant 0.22
gyrA 7892 c.591G>C synonymous_variant 0.23
gyrA 7898 p.Asp199Glu missense_variant 0.22
gyrA 7901 c.600G>T synonymous_variant 0.23
gyrA 7904 c.603G>C synonymous_variant 0.22
gyrA 7923 p.His208Tyr missense_variant 0.16
gyrA 8168 c.867A>G synonymous_variant 0.15
gyrA 8177 c.876A>C synonymous_variant 0.16
gyrA 8189 c.888G>C synonymous_variant 0.16
gyrA 8192 c.891C>G synonymous_variant 0.18
gyrA 8198 c.897T>C synonymous_variant 0.18
gyrA 8201 c.900C>G synonymous_variant 0.18
gyrA 8207 c.906T>C synonymous_variant 0.18
gyrA 8219 c.918T>C synonymous_variant 0.19
gyrA 8222 c.921C>T synonymous_variant 0.19
gyrA 8225 c.924T>C synonymous_variant 0.19
gyrA 8231 c.930C>G synonymous_variant 0.19
gyrA 8234 c.933T>G synonymous_variant 0.19
gyrA 8235 c.934_936delTTAinsCTG synonymous_variant 0.19
gyrA 8253 p.Ile318Leu missense_variant 0.23
gyrA 8267 c.966G>C synonymous_variant 0.23
gyrA 8270 c.969G>C synonymous_variant 0.23
gyrA 8283 p.Ile328Leu missense_variant 0.24
gyrA 8288 c.987T>C synonymous_variant 0.24
gyrA 8294 c.993T>C synonymous_variant 0.25
gyrA 8480 c.1179C>T synonymous_variant 0.15
gyrA 8486 c.1185T>C synonymous_variant 0.17
gyrA 8489 c.1188A>G synonymous_variant 0.17
gyrA 8492 c.1191G>C synonymous_variant 0.17
gyrA 8504 c.1203G>C synonymous_variant 0.19
gyrA 8516 c.1215T>C synonymous_variant 0.2
gyrA 8519 c.1218A>G synonymous_variant 0.2
gyrA 8520 c.1219C>T synonymous_variant 0.2
gyrA 8531 c.1230G>T synonymous_variant 0.28
gyrA 8535 p.Glu412Gln missense_variant 0.28
gyrA 8543 c.1242C>T synonymous_variant 0.26
gyrA 8546 c.1245T>C synonymous_variant 0.26
gyrA 8555 c.1254G>C synonymous_variant 0.3
gyrA 8561 c.1260A>C synonymous_variant 0.3
gyrA 8585 c.1284C>T synonymous_variant 0.31
gyrA 8588 c.1287G>A synonymous_variant 0.29
gyrA 8619 c.1318T>C synonymous_variant 0.27
gyrA 8624 c.1323G>T synonymous_variant 0.24
gyrA 8627 c.1326C>A synonymous_variant 0.24
gyrA 8636 c.1335A>C synonymous_variant 0.26
gyrA 8642 c.1341A>G synonymous_variant 0.28
gyrA 8655 p.Ile452Val missense_variant 0.25
gyrA 8672 c.1371A>G synonymous_variant 0.21
gyrA 8678 c.1377G>A synonymous_variant 0.18
gyrA 8694 c.1393C>T synonymous_variant 0.2
gyrA 8729 c.1428T>C synonymous_variant 0.15
gyrA 8765 p.Asp488Glu missense_variant 0.18
gyrA 8767 p.Arg489Lys missense_variant 0.18
gyrA 8870 c.1569G>C synonymous_variant 0.19
gyrA 8873 c.1572A>T synonymous_variant 0.23
gyrA 8888 c.1587C>G synonymous_variant 0.19
gyrA 8897 c.1596T>C synonymous_variant 0.21
gyrA 8903 c.1602T>C synonymous_variant 0.19
gyrA 8915 c.1614A>G synonymous_variant 0.19
gyrA 8924 c.1623C>T synonymous_variant 0.17
gyrA 8930 c.1629C>G synonymous_variant 0.18
gyrA 8933 c.1632G>C synonymous_variant 0.17
gyrA 8936 c.1635G>A synonymous_variant 0.18
gyrA 8939 c.1638T>C synonymous_variant 0.18
gyrA 8942 c.1641G>C synonymous_variant 0.2
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.19
gyrA 8983 p.Cys561Ser missense_variant 0.23
gyrA 8987 c.1686C>G synonymous_variant 0.24
gyrA 8990 c.1689C>G synonymous_variant 0.24
gyrA 8996 c.1695T>C synonymous_variant 0.26
gyrA 8998 p.Leu566Trp missense_variant 0.26
gyrA 9003 c.1702C>T synonymous_variant 0.27
gyrA 9023 c.1722A>C synonymous_variant 0.19
gyrA 9029 c.1728T>A synonymous_variant 0.17
gyrA 9032 c.1731T>C synonymous_variant 0.17
gyrA 9035 c.1734G>C synonymous_variant 0.18
gyrA 9038 c.1737C>G synonymous_variant 0.18
gyrA 9071 c.1770G>C synonymous_variant 0.16
gyrA 9074 c.1773G>C synonymous_variant 0.16
gyrA 9080 c.1779G>T synonymous_variant 0.18
gyrA 9089 c.1788G>C synonymous_variant 0.17
gyrA 9101 c.1800A>G synonymous_variant 0.17
gyrA 9104 c.1803C>A synonymous_variant 0.17
gyrA 9230 c.1929T>C synonymous_variant 0.15
gyrA 9266 c.1965C>T synonymous_variant 0.18
gyrA 9284 c.1983T>C synonymous_variant 0.15
gyrA 9291 c.1990C>T synonymous_variant 0.16
gyrA 9296 c.1995T>C synonymous_variant 0.16
gyrA 9304 p.Gly668Glu missense_variant 1.0
gyrA 9308 p.Asp669Glu missense_variant 0.17
gyrA 9315 c.2014C>T synonymous_variant 0.16
gyrA 9326 c.2025G>T synonymous_variant 0.17
gyrA 9782 c.2481C>T synonymous_variant 1.0
fgd1 490887 c.105G>C synonymous_variant 0.2
fgd1 490890 c.108C>G synonymous_variant 0.2
fgd1 490899 c.117C>T synonymous_variant 0.25
fgd1 490905 c.123T>C synonymous_variant 0.25
fgd1 490911 c.129T>G synonymous_variant 0.25
fgd1 490921 p.Gln47Glu missense_variant 0.26
fgd1 490929 c.147C>G synonymous_variant 0.25
fgd1 490932 c.150T>C synonymous_variant 0.26
fgd1 490948 p.Ser56Ala missense_variant 0.25
fgd1 490971 c.189A>G synonymous_variant 0.27
fgd1 490974 c.192T>C synonymous_variant 0.27
fgd1 490980 p.Asn66Lys missense_variant 0.27
fgd1 490983 c.201G>A synonymous_variant 0.23
fgd1 490988 p.Leu69Gln missense_variant 0.21
fgd1 490995 c.213C>G synonymous_variant 0.2
fgd1 490998 c.216T>G synonymous_variant 0.2
fgd1 491007 c.225G>C synonymous_variant 0.18
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575695 c.348C>G synonymous_variant 0.17
mshA 575704 c.357T>C synonymous_variant 0.17
mshA 575705 c.358T>C synonymous_variant 0.17
mshA 575713 c.366G>A synonymous_variant 0.18
mshA 575734 c.387T>G synonymous_variant 0.24
mshA 575746 c.399C>G synonymous_variant 0.29
mshA 575767 c.420G>A synonymous_variant 0.26
mshA 575771 p.Val142Ser missense_variant 0.26
mshA 575779 p.Glu144Asp missense_variant 0.25
mshA 575780 p.Pro145Ala missense_variant 0.25
mshA 575821 c.474G>C synonymous_variant 0.23
mshA 575824 c.477T>G synonymous_variant 0.23
mshA 575842 c.495G>C synonymous_variant 0.25
mshA 575845 c.498C>G synonymous_variant 0.26
mshA 575848 c.501C>T synonymous_variant 0.25
mshA 575851 c.504C>G synonymous_variant 0.25
mshA 575864 c.517T>C synonymous_variant 0.22
mshA 575884 c.537G>C synonymous_variant 0.17
mshA 575887 c.540G>T synonymous_variant 0.17
mshA 576108 p.Ala254Gly missense_variant 0.22
ccsA 620307 c.417C>G synonymous_variant 0.18
ccsA 620325 c.435G>C synonymous_variant 0.16
ccsA 620343 c.453G>C synonymous_variant 0.17
ccsA 620649 c.759A>G synonymous_variant 0.23
ccsA 620652 c.762C>G synonymous_variant 0.24
ccsA 620661 c.771C>G synonymous_variant 0.24
ccsA 620685 c.795G>A synonymous_variant 0.25
ccsA 620698 p.Val270Ile missense_variant 0.24
ccsA 620712 c.822G>C synonymous_variant 0.26
ccsA 620715 c.825C>T synonymous_variant 0.27
ccsA 620721 c.831G>A synonymous_variant 0.27
ccsA 620733 c.843G>C synonymous_variant 0.29
ccsA 620739 c.849A>G synonymous_variant 0.27
ccsA 620742 c.852G>C synonymous_variant 0.26
ccsA 620748 c.858T>C synonymous_variant 0.24
rpoB 759746 c.-61C>T upstream_gene_variant 1.0
rpoB 760058 c.252C>G synonymous_variant 0.17
rpoB 760070 c.264T>G synonymous_variant 0.2
rpoB 760091 c.285G>C synonymous_variant 0.23
rpoB 760101 c.295T>C synonymous_variant 0.23
rpoB 760109 c.303C>T synonymous_variant 0.28
rpoB 760112 c.306T>C synonymous_variant 0.28
rpoB 760118 c.312T>C synonymous_variant 0.3
rpoB 760121 c.315T>C synonymous_variant 0.3
rpoB 760130 p.Asp108Glu missense_variant 0.25
rpoB 760139 c.333A>G synonymous_variant 0.27
rpoB 760142 c.336C>G synonymous_variant 0.26
rpoB 760145 c.339C>G synonymous_variant 0.27
rpoB 760181 c.375T>A synonymous_variant 0.24
rpoB 760184 c.378A>G synonymous_variant 0.23
rpoB 760196 c.390C>G synonymous_variant 0.23
rpoB 760235 c.429T>C synonymous_variant 0.24
rpoB 760244 c.438G>C synonymous_variant 0.24
rpoB 760274 c.468G>A synonymous_variant 0.23
rpoB 760295 c.489C>T synonymous_variant 0.25
rpoB 760307 c.501T>C synonymous_variant 0.24
rpoB 760310 c.504G>C synonymous_variant 0.24
rpoB 760328 c.522G>C synonymous_variant 0.25
rpoB 760331 c.525G>C synonymous_variant 0.24
rpoB 760337 c.531C>G synonymous_variant 0.25
rpoB 760340 c.534G>T synonymous_variant 0.25
rpoB 760358 c.552C>G synonymous_variant 0.25
rpoB 760361 c.555T>C synonymous_variant 0.25
rpoB 760370 c.564C>G synonymous_variant 0.24
rpoB 760376 p.Asp190Glu missense_variant 0.2
rpoB 760380 p.Thr192Leu missense_variant 0.2
rpoB 760403 c.597C>T synonymous_variant 0.18
rpoB 760412 c.606C>T synonymous_variant 0.17
rpoB 760414 p.Gly203Asp missense_variant 0.16
rpoB 760424 c.618C>G synonymous_variant 0.17
rpoB 760520 c.714C>G synonymous_variant 0.16
rpoB 760532 c.726T>C synonymous_variant 0.15
rpoB 760547 c.741G>C synonymous_variant 0.21
rpoB 760563 p.Arg253Met missense_variant 0.23
rpoB 760591 p.Val262Ala missense_variant 0.25
rpoB 760601 c.795C>T synonymous_variant 0.23
rpoB 760611 c.805T>C synonymous_variant 0.22
rpoB 760622 c.816C>T synonymous_variant 0.22
rpoB 760646 c.840C>G synonymous_variant 0.2
rpoB 760670 c.864G>C synonymous_variant 0.16
rpoB 760674 c.868T>C synonymous_variant 0.23
rpoB 760679 c.873A>G synonymous_variant 0.23
rpoB 760683 c.877T>C synonymous_variant 0.23
rpoB 760724 c.918T>C synonymous_variant 0.19
rpoB 760730 c.924T>C synonymous_variant 0.18
rpoB 760748 c.942C>G synonymous_variant 0.17
rpoB 760757 c.951T>C synonymous_variant 0.18
rpoB 760759 p.Val318Ala missense_variant 0.18
rpoB 760769 c.963C>G synonymous_variant 0.21
rpoB 760793 c.987A>G synonymous_variant 0.2
rpoB 760805 c.999G>C synonymous_variant 0.22
rpoB 760817 c.1011A>G synonymous_variant 0.22
rpoB 760820 c.1014T>C synonymous_variant 0.23
rpoB 760826 c.1020C>G synonymous_variant 0.2
rpoB 760830 c.1024T>C synonymous_variant 0.22
rpoB 760841 c.1035T>C synonymous_variant 0.23
rpoB 760845 p.Thr347Pro missense_variant 0.22
rpoB 760856 c.1050C>G synonymous_variant 0.24
rpoB 760916 c.1110C>G synonymous_variant 0.29
rpoB 760919 c.1113C>G synonymous_variant 0.28
rpoB 760925 c.1119T>C synonymous_variant 0.27
rpoB 760928 c.1122G>C synonymous_variant 0.29
rpoB 760931 c.1125C>G synonymous_variant 0.28
rpoB 760937 c.1131G>A synonymous_variant 0.29
rpoB 760946 c.1140A>G synonymous_variant 0.28
rpoB 760973 c.1167G>C synonymous_variant 0.25
rpoB 760982 c.1176G>T synonymous_variant 0.23
rpoB 760985 c.1179G>T synonymous_variant 0.23
rpoB 760991 c.1185G>T synonymous_variant 0.23
rpoB 761006 c.1200C>T synonymous_variant 0.23
rpoB 761015 c.1209G>C synonymous_variant 0.22
rpoB 761021 c.1215G>C synonymous_variant 0.22
rpoB 761027 c.1221A>G synonymous_variant 0.21
rpoB 761036 c.1230G>C synonymous_variant 0.18
rpoB 761037 c.1231T>C synonymous_variant 0.18
rpoB 761051 c.1245G>T synonymous_variant 0.17
rpoB 761057 c.1251G>C synonymous_variant 0.17
rpoB 761060 c.1254C>G synonymous_variant 0.18
rpoB 761063 c.1257C>G synonymous_variant 0.18
rpoB 761097 p.Ser431Cys missense_variant 0.16
rpoB 761132 c.1326G>T synonymous_variant 0.18
rpoB 761133 c.1327_1329delTTGinsCTC synonymous_variant 0.2
rpoB 761150 c.1344A>C synonymous_variant 0.17
rpoB 761168 c.1362C>G synonymous_variant 0.17
rpoB 761180 c.1374A>C synonymous_variant 0.17
rpoB 761240 c.1434C>T synonymous_variant 0.19
rpoB 761249 c.1443A>G synonymous_variant 0.18
rpoB 761255 c.1449T>C synonymous_variant 0.22
rpoB 761261 c.1455G>T synonymous_variant 0.22
rpoB 761264 c.1458C>G synonymous_variant 0.23
rpoB 761282 c.1476C>G synonymous_variant 0.29
rpoB 761327 c.1521A>G synonymous_variant 0.3
rpoB 761345 c.1539G>T synonymous_variant 0.33
rpoB 761354 c.1548C>T synonymous_variant 0.35
rpoB 761360 c.1554T>C synonymous_variant 0.33
rpoB 761362 p.Ser519Thr missense_variant 0.33
rpoB 761374 p.Val523Glu missense_variant 0.33
rpoB 761414 c.1608A>G synonymous_variant 0.28
rpoB 761423 c.1617T>C synonymous_variant 0.28
rpoB 761432 c.1626C>T synonymous_variant 0.27
rpoB 761435 c.1629T>C synonymous_variant 0.27
rpoB 761438 c.1632G>C synonymous_variant 0.25
rpoB 761444 c.1638T>C synonymous_variant 0.26
rpoB 761452 p.Val549Glu missense_variant 0.25
rpoB 761457 p.Pro551Ser missense_variant 0.24
rpoB 761465 c.1659G>A synonymous_variant 0.24
rpoB 761471 c.1665C>T synonymous_variant 0.23
rpoB 761477 c.1671C>T synonymous_variant 0.23
rpoB 761492 c.1686G>C synonymous_variant 0.25
rpoB 761504 c.1698C>G synonymous_variant 0.25
rpoB 761510 c.1704T>C synonymous_variant 0.25
rpoB 761531 c.1725C>G synonymous_variant 0.27
rpoB 761537 c.1731C>G synonymous_variant 0.27
rpoB 761558 c.1752C>G synonymous_variant 0.25
rpoB 761570 c.1764T>C synonymous_variant 0.25
rpoB 761573 c.1767C>G synonymous_variant 0.25
rpoB 761579 c.1773G>C synonymous_variant 0.26
rpoB 761606 c.1800C>G synonymous_variant 0.22
rpoB 761612 c.1806G>T synonymous_variant 0.22
rpoB 761615 c.1809A>C synonymous_variant 0.19
rpoB 761648 c.1842T>C synonymous_variant 0.17
rpoB 761666 c.1860G>C synonymous_variant 0.21
rpoB 761690 c.1884G>C synonymous_variant 0.23
rpoB 761732 c.1926C>G synonymous_variant 0.18
rpoB 761735 c.1929C>G synonymous_variant 0.17
rpoB 761750 c.1944G>C synonymous_variant 0.24
rpoB 761765 c.1959T>C synonymous_variant 0.26
rpoB 761772 p.His656Ala missense_variant 0.25
rpoB 761778 p.Asn658Asp missense_variant 0.25
rpoB 761791 p.Arg662His missense_variant 0.24
rpoB 761813 c.2007T>C synonymous_variant 0.22
rpoB 761828 c.2022C>T synonymous_variant 0.22
rpoB 761834 c.2028T>C synonymous_variant 0.16
rpoB 761852 c.2046C>G synonymous_variant 0.16
rpoB 761858 c.2052G>C synonymous_variant 0.16
rpoB 761873 c.2067A>C synonymous_variant 0.2
rpoB 761885 c.2079T>C synonymous_variant 0.3
rpoB 761891 c.2085G>C synonymous_variant 0.3
rpoB 761909 c.2103T>C synonymous_variant 0.22
rpoB 761912 c.2106T>C synonymous_variant 0.22
rpoB 761913 p.Asp703Gln missense_variant 0.23
rpoB 761916 p.Asp704Asn missense_variant 0.23
rpoB 761921 c.2115C>T synonymous_variant 0.24
rpoB 761930 c.2124G>C synonymous_variant 0.3
rpoB 761954 c.2148C>G synonymous_variant 0.32
rpoB 762008 c.2202C>G synonymous_variant 0.38
rpoB 762014 c.2208C>T synonymous_variant 0.38
rpoB 762047 c.2241G>A synonymous_variant 0.35
rpoB 762053 c.2247T>C synonymous_variant 0.35
rpoB 762062 c.2256T>C synonymous_variant 0.38
rpoB 762065 c.2259T>C synonymous_variant 0.38
rpoB 762083 c.2277T>C synonymous_variant 0.34
rpoB 762086 c.2280G>C synonymous_variant 0.33
rpoB 762101 c.2295C>G synonymous_variant 0.35
rpoB 762114 p.Ile770Val missense_variant 0.36
rpoB 762131 c.2325C>G synonymous_variant 0.29
rpoB 762134 c.2328C>G synonymous_variant 0.31
rpoB 762143 c.2337T>C synonymous_variant 0.27
rpoB 762167 c.2361T>C synonymous_variant 0.28
rpoB 762185 c.2379G>C synonymous_variant 0.29
rpoB 762233 c.2427G>T synonymous_variant 0.29
rpoB 762254 c.2448T>G synonymous_variant 0.29
rpoB 762257 c.2451C>G synonymous_variant 0.28
rpoB 762266 c.2460T>C synonymous_variant 0.29
rpoB 762281 c.2475G>A synonymous_variant 0.32
rpoB 762284 c.2478G>C synonymous_variant 0.32
rpoB 762293 c.2487T>C synonymous_variant 0.35
rpoB 762317 c.2511A>G synonymous_variant 0.33
rpoB 762338 c.2532T>C synonymous_variant 0.3
rpoB 762341 c.2535G>C synonymous_variant 0.29
rpoB 762347 c.2541T>C synonymous_variant 0.31
rpoB 762362 p.Glu852Asp missense_variant 0.32
rpoB 762369 c.2563T>C synonymous_variant 0.3
rpoC 762395 c.-975G>C upstream_gene_variant 0.32
rpoC 762398 c.-972T>C upstream_gene_variant 0.3
rpoC 762401 c.-969G>C upstream_gene_variant 0.3
rpoC 762404 c.-966T>C upstream_gene_variant 0.3
rpoC 762410 c.-960T>C upstream_gene_variant 0.32
rpoC 762416 c.-954A>G upstream_gene_variant 0.32
rpoC 762431 c.-939C>T upstream_gene_variant 0.28
rpoC 762434 c.-936T>G upstream_gene_variant 0.71
rpoC 762449 c.-921C>A upstream_gene_variant 0.27
rpoC 762470 c.-900G>C upstream_gene_variant 0.26
rpoC 762491 c.-879T>C upstream_gene_variant 0.27
rpoC 762509 c.-861T>G upstream_gene_variant 0.22
rpoB 762510 p.Ala902Pro missense_variant 0.22
rpoC 762533 c.-837T>C upstream_gene_variant 0.2
rpoC 762536 c.-834T>C upstream_gene_variant 0.19
rpoC 762537 c.-833T>C upstream_gene_variant 0.19
rpoC 762551 c.-819C>T upstream_gene_variant 0.17
rpoC 762812 c.-558C>G upstream_gene_variant 0.16
rpoC 762818 c.-552C>G upstream_gene_variant 0.19
rpoC 762827 c.-543G>C upstream_gene_variant 0.2
rpoC 762833 c.-537C>T upstream_gene_variant 0.2
rpoC 762857 c.-513C>G upstream_gene_variant 0.21
rpoC 762860 c.-510G>C upstream_gene_variant 0.19
rpoC 762902 c.-468C>T upstream_gene_variant 0.31
rpoC 762917 c.-453C>T upstream_gene_variant 0.3
rpoC 762929 c.-441G>T upstream_gene_variant 0.28
rpoC 762962 c.-408C>T upstream_gene_variant 0.29
rpoC 762983 c.-387C>G upstream_gene_variant 0.27
rpoC 762995 c.-375G>T upstream_gene_variant 0.32
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.32
rpoC 763040 c.-330C>G upstream_gene_variant 0.31
rpoC 763050 c.-320C>T upstream_gene_variant 0.3
rpoC 763070 c.-300T>C upstream_gene_variant 0.32
rpoC 763082 c.-288C>T upstream_gene_variant 0.3
rpoC 763085 c.-285C>G upstream_gene_variant 0.29
rpoC 763115 c.-255T>C upstream_gene_variant 0.3
rpoC 763127 c.-243G>C upstream_gene_variant 0.32
rpoC 763166 c.-204A>G upstream_gene_variant 0.23
rpoC 763169 c.-201A>G upstream_gene_variant 0.23
rpoC 763202 c.-168A>C upstream_gene_variant 0.18
rpoC 763205 c.-165G>T upstream_gene_variant 0.18
rpoC 763206 c.-164_-162delAGTinsTCC upstream_gene_variant 0.18
rpoC 763226 c.-144A>G upstream_gene_variant 0.16
rpoC 763241 c.-129G>A upstream_gene_variant 0.16
rpoC 763402 c.33C>T synonymous_variant 0.16
rpoC 763411 c.42T>G synonymous_variant 0.16
rpoC 763414 c.45T>G synonymous_variant 0.16
rpoC 763441 c.72C>T synonymous_variant 0.18
rpoC 763444 c.75T>C synonymous_variant 0.18
rpoC 763456 c.87A>G synonymous_variant 0.26
rpoC 763486 c.117T>G synonymous_variant 0.25
rpoC 763528 c.159G>A synonymous_variant 0.22
rpoC 763546 c.177A>G synonymous_variant 0.32
rpoC 763570 c.201G>C synonymous_variant 0.32
rpoC 763594 c.225C>T synonymous_variant 0.35
rpoC 763603 c.234C>T synonymous_variant 0.33
rpoC 763618 c.249C>T synonymous_variant 0.32
rpoC 763636 c.267T>C synonymous_variant 0.35
rpoC 763660 c.291T>G synonymous_variant 0.33
rpoC 763669 c.300C>G synonymous_variant 0.33
rpoC 763675 c.306C>G synonymous_variant 0.35
rpoC 763703 c.334_336delTCGinsAGC synonymous_variant 0.22
rpoC 763709 c.340C>T synonymous_variant 0.22
rpoC 763714 c.345G>C synonymous_variant 0.23
rpoC 763726 c.357C>T synonymous_variant 0.17
rpoC 763732 c.363C>G synonymous_variant 0.17
rpoC 763741 c.372C>T synonymous_variant 0.2
rpoC 763744 c.375G>C synonymous_variant 0.21
rpoC 763765 c.396T>G synonymous_variant 0.22
rpoC 763771 c.402C>T synonymous_variant 0.22
rpoC 763780 c.411C>G synonymous_variant 0.23
rpoC 763792 p.Glu141Asp missense_variant 0.22
rpoC 763801 c.432C>G synonymous_variant 0.21
rpoC 763807 c.438T>C synonymous_variant 0.24
rpoC 763836 p.Ala156Val missense_variant 0.2
rpoC 763851 p.Ala161Gly missense_variant 0.25
rpoC 763855 c.486C>T synonymous_variant 0.27
rpoC 763858 c.489A>G synonymous_variant 0.28
rpoC 763872 p.Gly168Ala missense_variant 0.29
rpoC 763876 p.Glu169Asp missense_variant 0.29
rpoC 763879 c.510A>G synonymous_variant 0.29
rpoC 763888 c.519G>C synonymous_variant 0.31
rpoC 763891 c.522G>C synonymous_variant 0.3
rpoC 763894 c.525A>G synonymous_variant 0.31
rpoC 763936 c.567C>G synonymous_variant 0.35
rpoC 763939 c.570G>A synonymous_variant 0.34
rpoC 763951 c.582G>A synonymous_variant 0.37
rpoC 763963 c.594C>G synonymous_variant 0.33
rpoC 763967 p.Gly200Ser missense_variant 0.35
rpoC 763972 c.603C>T synonymous_variant 0.35
rpoC 763987 c.618C>T synonymous_variant 0.34
rpoC 763996 c.627T>C synonymous_variant 0.31
rpoC 764005 c.636G>C synonymous_variant 0.31
rpoC 764011 c.642T>C synonymous_variant 0.31
rpoC 764024 c.655T>C synonymous_variant 0.31
rpoC 764040 p.Ser224Thr missense_variant 0.3
rpoC 764044 c.675T>G synonymous_variant 0.3
rpoC 764059 c.690G>T synonymous_variant 0.29
rpoC 764083 c.714A>G synonymous_variant 0.31
rpoC 764098 c.729A>G synonymous_variant 0.29
rpoC 764101 c.732C>G synonymous_variant 0.3
rpoC 764140 c.771C>T synonymous_variant 0.29
rpoC 764159 c.790C>T synonymous_variant 0.28
rpoC 764167 c.798G>A synonymous_variant 0.27
rpoC 764188 c.819A>G synonymous_variant 0.29
rpoC 764195 p.Ser276Ile missense_variant 0.26
rpoC 764215 c.846A>C synonymous_variant 0.25
rpoC 764218 c.849C>T synonymous_variant 0.26
rpoC 764242 c.873C>T synonymous_variant 0.25
rpoC 764245 c.876C>A synonymous_variant 0.26
rpoC 764246 c.877_879delCTCinsTTG synonymous_variant 0.26
rpoC 764263 c.894G>C synonymous_variant 0.29
rpoC 764266 c.897T>C synonymous_variant 0.3
rpoC 764278 c.909A>G synonymous_variant 0.29
rpoC 764317 c.948C>G synonymous_variant 0.33
rpoC 764320 c.951C>G synonymous_variant 0.28
rpoC 764365 c.996C>T synonymous_variant 0.28
rpoC 764377 c.1008C>G synonymous_variant 0.22
rpoC 764380 c.1011G>C synonymous_variant 0.18
rpoC 764381 c.1012_1013delTCinsAG synonymous_variant 0.18
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.21
rpoC 764428 c.1059G>C synonymous_variant 0.19
rpoC 764431 c.1062G>C synonymous_variant 0.19
rpoC 764434 c.1065A>G synonymous_variant 0.19
rpoC 764446 c.1077T>C synonymous_variant 0.17
rpoC 764449 c.1080G>C synonymous_variant 0.18
rpoC 764452 c.1083T>C synonymous_variant 0.22
rpoC 764458 c.1089G>C synonymous_variant 0.23
rpoC 764461 c.1092A>G synonymous_variant 0.23
rpoC 764497 c.1128A>G synonymous_variant 0.29
rpoC 764503 c.1134G>C synonymous_variant 0.28
rpoC 764521 c.1152T>C synonymous_variant 0.29
rpoC 764527 c.1158C>T synonymous_variant 0.29
rpoC 764536 c.1167G>T synonymous_variant 0.35
rpoC 764539 c.1170C>G synonymous_variant 0.38
rpoC 764554 c.1185C>T synonymous_variant 0.41
rpoC 764575 c.1206T>G synonymous_variant 0.37
rpoC 764578 c.1209C>G synonymous_variant 0.37
rpoC 764593 c.1224C>T synonymous_variant 0.41
rpoC 764605 c.1236G>A synonymous_variant 0.4
rpoC 764626 c.1257C>T synonymous_variant 0.38
rpoC 764650 c.1281G>T synonymous_variant 0.28
rpoC 764668 c.1299C>T synonymous_variant 0.3
rpoC 764686 c.1317C>T synonymous_variant 0.29
rpoC 764752 c.1383G>C synonymous_variant 0.3
rpoC 764764 c.1395T>C synonymous_variant 0.3
rpoC 764782 c.1413C>T synonymous_variant 0.32
rpoC 764797 c.1428G>C synonymous_variant 0.34
rpoC 764803 c.1434C>G synonymous_variant 0.34
rpoC 764809 c.1440C>T synonymous_variant 0.33
rpoC 764815 c.1446A>G synonymous_variant 0.35
rpoC 764858 c.1489T>C synonymous_variant 0.32
rpoC 764887 c.1518G>C synonymous_variant 0.27
rpoC 764888 c.1519_1521delTTGinsCTC synonymous_variant 0.28
rpoC 764896 c.1527C>T synonymous_variant 0.3
rpoC 764902 c.1533C>T synonymous_variant 0.32
rpoC 764911 c.1542A>G synonymous_variant 0.3
rpoC 764923 c.1554A>G synonymous_variant 0.26
rpoC 764932 c.1563C>G synonymous_variant 0.25
rpoC 764948 c.1579T>C synonymous_variant 0.2
rpoC 764968 c.1599T>C synonymous_variant 0.18
rpoC 765007 c.1638T>G synonymous_variant 0.25
rpoC 765008 c.1639T>C synonymous_variant 0.25
rpoC 765013 c.1644C>T synonymous_variant 0.25
rpoC 765019 c.1650A>G synonymous_variant 0.26
rpoC 765040 c.1671T>C synonymous_variant 0.22
rpoC 765041 c.1672T>C synonymous_variant 0.22
rpoC 765047 c.1678T>C synonymous_variant 0.23
rpoC 765052 c.1683C>G synonymous_variant 0.21
rpoC 765053 c.1684_1686delTCCinsAGT synonymous_variant 0.21
rpoC 765065 c.1696C>T synonymous_variant 0.2
rpoC 765073 c.1704G>C synonymous_variant 0.2
rpoC 765076 c.1707A>G synonymous_variant 0.2
rpoC 765079 c.1710T>C synonymous_variant 0.2
rpoC 765082 c.1713G>C synonymous_variant 0.19
rpoC 765089 c.1720T>C synonymous_variant 0.2
rpoC 765103 c.1734G>A synonymous_variant 0.2
rpoC 765121 c.1752G>T synonymous_variant 0.15
rpoC 765367 c.1998C>G synonymous_variant 0.17
rpoC 765370 c.2001G>C synonymous_variant 0.21
rpoC 765383 p.Met672Leu missense_variant 0.21
rpoC 765391 c.2022C>T synonymous_variant 0.22
rpoC 765406 c.2037G>T synonymous_variant 0.23
rpoC 765409 c.2040T>C synonymous_variant 0.23
rpoC 765412 c.2043T>C synonymous_variant 0.24
rpoC 765421 c.2052C>G synonymous_variant 0.24
rpoC 765452 p.Ala695Ser missense_variant 0.28
rpoC 765466 c.2097C>T synonymous_variant 0.25
rpoC 765478 c.2109T>C synonymous_variant 0.31
rpoC 765493 c.2124G>C synonymous_variant 0.31
rpoC 765499 c.2130C>G synonymous_variant 0.31
rpoC 765508 c.2139C>G synonymous_variant 0.32
rpoC 765517 c.2148C>G synonymous_variant 0.33
rpoC 765529 c.2160C>T synonymous_variant 0.33
rpoC 765541 c.2172C>G synonymous_variant 0.35
rpoC 765553 c.2184C>T synonymous_variant 0.33
rpoC 765556 c.2187G>C synonymous_variant 0.33
rpoC 765562 c.2193G>C synonymous_variant 0.36
rpoC 765578 c.2209C>T synonymous_variant 0.37
rpoC 765622 p.Glu751Asp missense_variant 0.4
rpoC 765625 c.2256C>T synonymous_variant 0.38
rpoC 765628 c.2259G>C synonymous_variant 0.37
rpoC 765658 c.2289C>T synonymous_variant 0.41
rpoC 765670 c.2301C>T synonymous_variant 0.41
rpoC 765700 c.2331T>C synonymous_variant 0.4
rpoC 765728 p.Gln787Lys missense_variant 0.41
rpoC 765734 c.2365T>C synonymous_variant 0.41
rpoC 765739 c.2370G>C synonymous_variant 0.41
rpoC 765752 p.Asp795Ser missense_variant 0.41
rpoC 765772 c.2403C>G synonymous_variant 0.33
rpoC 765784 c.2415C>G synonymous_variant 0.37
rpoC 765790 c.2421C>T synonymous_variant 0.37
rpoC 765793 c.2424C>G synonymous_variant 0.36
rpoC 765796 c.2427C>T synonymous_variant 0.36
rpoC 765814 c.2445A>G synonymous_variant 0.37
rpoC 765826 c.2457T>C synonymous_variant 0.37
rpoC 765835 c.2466C>T synonymous_variant 0.33
rpoC 765883 c.2514C>G synonymous_variant 0.27
rpoC 765886 c.2517C>G synonymous_variant 0.26
rpoC 765892 c.2523T>C synonymous_variant 0.27
rpoC 765934 c.2565C>T synonymous_variant 0.3
rpoC 765967 c.2598C>T synonymous_variant 0.31
rpoC 765982 c.2613C>G synonymous_variant 0.31
rpoC 765994 c.2625A>T synonymous_variant 0.35
rpoC 766012 c.2643C>G synonymous_variant 0.33
rpoC 766021 c.2652G>C synonymous_variant 0.37
rpoC 766061 p.Val898Ile missense_variant 0.34
rpoC 766082 p.Ala905Gln missense_variant 0.26
rpoC 766093 c.2724C>A synonymous_variant 0.24
rpoC 766095 p.Thr909Ser missense_variant 0.23
rpoC 766105 c.2736C>T synonymous_variant 0.21
rpoC 766123 c.2754C>A synonymous_variant 0.2
rpoC 766129 c.2760C>G synonymous_variant 0.16
rpoC 766135 c.2766G>A synonymous_variant 0.17
rpoC 766381 c.3012C>T synonymous_variant 0.16
rpoC 766384 c.3015A>G synonymous_variant 0.17
rpoC 766393 c.3024C>G synonymous_variant 0.17
rpoC 766402 c.3033C>G synonymous_variant 0.19
rpoC 766408 c.3039C>T synonymous_variant 0.19
rpoC 766426 c.3057C>T synonymous_variant 0.25
rpoC 766456 c.3087C>G synonymous_variant 0.31
rpoC 766486 c.3117A>G synonymous_variant 0.31
rpoC 766492 c.3123T>C synonymous_variant 0.32
rpoC 766522 c.3153C>G synonymous_variant 0.39
rpoC 766528 c.3159T>C synonymous_variant 0.39
rpoC 766530 p.Arg1054Gln missense_variant 0.38
rpoC 766549 c.3180G>C synonymous_variant 0.4
rpoC 766573 c.3204T>C synonymous_variant 0.41
rpoC 766585 c.3216T>C synonymous_variant 0.38
rpoC 766594 c.3225G>C synonymous_variant 0.37
rpoC 766607 p.Ile1080Leu missense_variant 0.37
rpoC 766630 c.3261G>T synonymous_variant 0.38
rpoC 766660 c.3291G>A synonymous_variant 0.32
rpoC 766666 c.3297C>G synonymous_variant 0.27
rpoC 766672 c.3303T>C synonymous_variant 0.29
rpoC 766700 c.3331C>T synonymous_variant 0.31
rpoC 766726 c.3357T>C synonymous_variant 0.33
rpoC 766733 c.3364C>T synonymous_variant 0.33
rpoC 766738 c.3369G>C synonymous_variant 0.32
rpoC 766741 c.3372G>C synonymous_variant 0.33
rpoC 766750 c.3381C>G synonymous_variant 0.36
rpoC 766765 c.3396A>C synonymous_variant 0.37
rpoC 766774 c.3405T>C synonymous_variant 0.37
rpoC 766798 c.3429C>G synonymous_variant 0.34
rpoC 766801 c.3432C>G synonymous_variant 0.34
rpoC 766804 c.3435A>G synonymous_variant 0.36
rpoC 766843 c.3474T>G synonymous_variant 0.45
rpoC 766864 c.3495G>C synonymous_variant 0.43
rpoC 766876 c.3507C>T synonymous_variant 0.39
rpoC 766883 p.Ser1172Ala missense_variant 0.4
rpoC 766894 c.3525T>C synonymous_variant 0.36
rpoC 766895 c.3526T>C synonymous_variant 0.36
rpoC 766900 c.3531T>C synonymous_variant 0.36
rpoC 766903 c.3534C>T synonymous_variant 0.36
rpoC 766918 c.3549C>T synonymous_variant 0.38
rpoC 766933 c.3564A>G synonymous_variant 0.42
rpoC 766945 c.3576A>G synonymous_variant 0.38
rpoC 766963 c.3594T>G synonymous_variant 0.34
rpoC 766996 c.3627C>G synonymous_variant 0.22
rpoC 767002 c.3633G>C synonymous_variant 0.21
rpoC 767009 c.3640_3642delTCGinsAGC synonymous_variant 0.21
rpoC 767014 c.3645G>C synonymous_variant 0.2
rpoC 767033 c.3664_3666delTCGinsAGT synonymous_variant 0.2
rpoC 767059 c.3690T>G synonymous_variant 0.26
rpoC 767062 c.3693C>A synonymous_variant 0.25
rpoC 767098 c.3729T>C synonymous_variant 0.24
rpoC 767119 c.3750A>G synonymous_variant 0.23
rpoC 767134 c.3765C>A synonymous_variant 0.2
rpoC 767158 c.3789T>A synonymous_variant 0.29
rpoC 767167 c.3798C>G synonymous_variant 0.31
rpoC 767180 p.Ala1271Gln missense_variant 0.3
rpoC 767191 c.3822C>G synonymous_variant 0.27
rpoC 767206 c.3837C>G synonymous_variant 0.25
rpoC 767209 c.3840T>C synonymous_variant 0.25
rpoC 767221 c.3852C>G synonymous_variant 0.22
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775981 p.Leu834Met missense_variant 0.15
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781655 c.96T>C synonymous_variant 0.18
rpsL 781658 c.99A>G synonymous_variant 0.17
rpsL 781682 c.123T>C synonymous_variant 0.23
rpsL 781715 c.156T>C synonymous_variant 0.28
rpsL 781718 c.159C>G synonymous_variant 0.28
rpsL 781721 c.162C>T synonymous_variant 0.28
rpsL 781728 c.169T>C synonymous_variant 0.27
rpsL 781736 c.177T>C synonymous_variant 0.25
rpsL 781751 c.192G>C synonymous_variant 0.28
rpsL 781754 c.195G>C synonymous_variant 0.27
rpsL 781760 c.201T>C synonymous_variant 0.29
rpsL 781766 c.207C>T synonymous_variant 0.3
rpsL 781772 c.213C>G synonymous_variant 0.28
rpsL 781793 c.234G>C synonymous_variant 0.29
rpsL 781808 c.249C>T synonymous_variant 0.28
rpsL 781832 c.273T>G synonymous_variant 0.3
rpsL 781835 c.276T>C synonymous_variant 0.3
rpsL 781859 c.300T>G synonymous_variant 0.26
rpsL 781865 c.306G>C synonymous_variant 0.24
rpsL 781868 c.309T>C synonymous_variant 0.23
rpsL 781871 c.312G>C synonymous_variant 0.23
rpsL 781883 c.324G>A synonymous_variant 0.26
rpsL 781886 c.327C>T synonymous_variant 0.26
rpsL 781892 c.333A>G synonymous_variant 0.25
rpsL 781898 c.339A>T synonymous_variant 0.24
rpsL 781916 c.357T>C synonymous_variant 0.23
rpsL 781929 p.Gly124Ser missense_variant 0.23
rpsL 781933 c.374G>A splice_region_variant&stop_retained_variant 0.22
rplC 800612 c.-197A>G upstream_gene_variant 0.27
rplC 800618 c.-191T>C upstream_gene_variant 0.28
rplC 800621 c.-188G>A upstream_gene_variant 0.26
rplC 800627 c.-182C>T upstream_gene_variant 0.29
rplC 800648 c.-161A>G upstream_gene_variant 0.33
rplC 800654 c.-155T>C upstream_gene_variant 0.32
rplC 800693 c.-116A>G upstream_gene_variant 0.22
rplC 800703 c.-106T>C upstream_gene_variant 0.24
rplC 800714 c.-95C>T upstream_gene_variant 0.23
rplC 800715 c.-94A>C upstream_gene_variant 0.23
rplC 800723 c.-86C>G upstream_gene_variant 0.24
rplC 800744 c.-65G>C upstream_gene_variant 0.23
rplC 800745 c.-64_-62delCTCinsTTG upstream_gene_variant 0.23
rplC 800759 c.-50C>T upstream_gene_variant 0.25
rplC 800762 c.-47T>G upstream_gene_variant 0.24
fbiC 1303488 c.558G>C synonymous_variant 0.16
fbiC 1303506 c.576C>T synonymous_variant 0.23
fbiC 1303512 c.582T>C synonymous_variant 0.25
fbiC 1303534 p.Ser202Ala missense_variant 0.28
fbiC 1303538 p.Arg203Leu missense_variant 0.28
fbiC 1303545 c.615A>G synonymous_variant 0.29
fbiC 1303575 c.645G>C synonymous_variant 0.3
fbiC 1303578 c.648G>A synonymous_variant 0.31
fbiC 1303584 c.654C>G synonymous_variant 0.3
fbiC 1303596 c.666G>C synonymous_variant 0.29
fbiC 1303605 c.675C>G synonymous_variant 0.29
fbiC 1303608 c.678G>A synonymous_variant 0.26
fbiC 1303614 c.684C>T synonymous_variant 0.26
fbiC 1303617 c.687C>G synonymous_variant 0.27
fbiC 1303620 c.690C>T synonymous_variant 0.26
fbiC 1303629 c.699C>T synonymous_variant 0.29
fbiC 1303632 c.702T>G synonymous_variant 0.3
fbiC 1303659 c.729T>C synonymous_variant 0.22
fbiC 1303661 p.Val244Ala missense_variant 0.24
fbiC 1303674 c.744C>G synonymous_variant 0.27
fbiC 1303686 c.756C>G synonymous_variant 0.26
fbiC 1303704 c.774T>C synonymous_variant 0.24
fbiC 1303708 c.778T>C synonymous_variant 0.25
fbiC 1303729 c.799_801delCTAinsTTG synonymous_variant 0.24
fbiC 1303732 p.Ser268Ala missense_variant 0.23
fbiC 1303737 c.807G>A synonymous_variant 0.25
fbiC 1303746 c.816T>C synonymous_variant 0.26
fbiC 1303750 c.820_822delTTAinsCTG synonymous_variant 0.24
fbiC 1303755 c.825T>C synonymous_variant 0.25
fbiC 1303779 c.849G>A synonymous_variant 0.23
fbiC 1303782 c.852C>T synonymous_variant 0.22
fbiC 1303785 c.855G>C synonymous_variant 0.23
fbiC 1303788 c.858T>C synonymous_variant 0.22
fbiC 1303789 p.Ile287Val missense_variant 0.21
fbiC 1303800 c.870G>C synonymous_variant 0.25
fbiC 1303812 c.882C>T synonymous_variant 0.29
fbiC 1303818 c.888C>G synonymous_variant 0.25
fbiC 1303825 p.Glu299Gln missense_variant 0.26
fbiC 1303844 p.Ala305Gly missense_variant 0.22
fbiC 1303846 p.Phe306Val missense_variant 0.22
fbiC 1303854 c.924T>C synonymous_variant 0.23
fbiC 1303860 c.930A>T synonymous_variant 0.21
fbiC 1303869 c.939T>C synonymous_variant 0.16
fbiC 1303905 c.975G>C synonymous_variant 0.2
fbiC 1303911 c.981G>C synonymous_variant 0.21
fbiC 1303913 p.Gly328Asp missense_variant 0.21
fbiC 1303920 c.990C>G synonymous_variant 0.21
fbiC 1303923 c.993C>T synonymous_variant 0.21
fbiC 1303938 c.1008C>T synonymous_variant 0.16
fbiC 1304019 c.1089C>T synonymous_variant 0.21
fbiC 1304022 c.1092T>C synonymous_variant 0.21
fbiC 1304046 c.1116C>G synonymous_variant 0.16
fbiC 1304063 p.Ala378Glu missense_variant 0.16
fbiC 1304481 c.1551T>G synonymous_variant 0.15
fbiC 1304496 c.1566T>A synonymous_variant 0.18
fbiC 1304499 c.1569T>G synonymous_variant 0.17
fbiC 1304502 c.1572G>C synonymous_variant 0.17
fbiC 1304526 c.1596T>G synonymous_variant 0.18
fbiC 1304532 c.1602G>C synonymous_variant 0.18
fbiC 1304533 c.1603T>C synonymous_variant 0.18
fbiC 1304541 c.1611C>G synonymous_variant 0.18
fbiC 1304544 c.1614T>C synonymous_variant 0.18
fbiC 1304546 p.Val539Ala missense_variant 0.18
fbiC 1304559 p.Glu543Asp missense_variant 0.18
fbiC 1304565 c.1635C>G synonymous_variant 0.19
fbiC 1304568 c.1638T>C synonymous_variant 0.19
fbiC 1304574 c.1644C>G synonymous_variant 0.19
fbiC 1304580 c.1650T>C synonymous_variant 0.19
fbiC 1304610 c.1680C>G synonymous_variant 0.16
fbiC 1304613 c.1683T>A synonymous_variant 0.15
fbiC 1304928 c.1998T>C synonymous_variant 0.15
fbiC 1304934 c.2004C>G synonymous_variant 0.15
fbiC 1304937 c.2007G>C synonymous_variant 0.16
fbiC 1304946 c.2016G>C synonymous_variant 0.18
fbiC 1304958 c.2028T>G synonymous_variant 0.16
fbiC 1305364 p.Met812Leu missense_variant 0.9
atpE 1460882 c.-163T>C upstream_gene_variant 0.25
atpE 1460895 c.-150G>T upstream_gene_variant 0.17
atpE 1460900 c.-145T>C upstream_gene_variant 0.16
atpE 1460904 c.-141C>T upstream_gene_variant 0.17
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472030 n.185G>T non_coding_transcript_exon_variant 0.18
rrs 1472031 n.186G>T non_coding_transcript_exon_variant 0.18
rrs 1472033 n.188A>G non_coding_transcript_exon_variant 0.18
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 0.18
rrs 1472040 n.195T>C non_coding_transcript_exon_variant 0.21
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.21
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.23
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.27
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.17
rrs 1472489 n.644A>G non_coding_transcript_exon_variant 0.17
rrs 1472686 n.841G>A non_coding_transcript_exon_variant 0.35
rrs 1472847 n.1002G>C non_coding_transcript_exon_variant 0.17
rrs 1472848 n.1003T>G non_coding_transcript_exon_variant 0.17
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 0.17
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 0.17
rrs 1472859 n.1014G>C non_coding_transcript_exon_variant 0.17
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.17
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.21
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.21
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.23
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.24
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.29
rrs 1473288 n.1443C>T non_coding_transcript_exon_variant 0.26
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.26
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 0.26
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.19
rrl 1473797 n.140G>T non_coding_transcript_exon_variant 0.18
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.19
rrl 1473813 n.156C>T non_coding_transcript_exon_variant 0.19
rrl 1473831 n.174G>A non_coding_transcript_exon_variant 0.29
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.18
rrl 1473887 n.230T>A non_coding_transcript_exon_variant 0.18
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 0.18
rrl 1473899 n.242A>T non_coding_transcript_exon_variant 0.19
rrl 1473918 n.261C>T non_coding_transcript_exon_variant 0.24
rrl 1473924 n.267_268insT non_coding_transcript_exon_variant 0.23
rrl 1473942 n.285G>T non_coding_transcript_exon_variant 0.27
rrl 1473943 n.286G>C non_coding_transcript_exon_variant 0.24
rrl 1473945 n.288T>A non_coding_transcript_exon_variant 0.24
rrl 1473946 n.289A>T non_coding_transcript_exon_variant 0.24
rrl 1473986 n.329T>C non_coding_transcript_exon_variant 0.15
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.15
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.16
rrl 1474061 n.404T>C non_coding_transcript_exon_variant 0.14
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.17
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.17
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.2
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.15
rrl 1474433 n.776G>T non_coding_transcript_exon_variant 0.18
rrl 1474435 n.779_783delTGAAT non_coding_transcript_exon_variant 0.19
rrl 1474447 n.790G>A non_coding_transcript_exon_variant 0.21
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.29
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.27
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.27
rrl 1474717 n.1060A>T non_coding_transcript_exon_variant 0.32
rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.27
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.27
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.3
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.36
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.27
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.2
rrl 1475027 n.1370G>T non_coding_transcript_exon_variant 0.18
rrl 1475028 n.1371G>T non_coding_transcript_exon_variant 0.18
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.16
rrl 1475401 n.1745delC non_coding_transcript_exon_variant 0.22
rrl 1475404 n.1747A>G non_coding_transcript_exon_variant 0.23
rrl 1475405 n.1748A>T non_coding_transcript_exon_variant 0.23
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.26
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.25
rrl 1475453 n.1796T>A non_coding_transcript_exon_variant 0.22
rrl 1475480 n.1823A>G non_coding_transcript_exon_variant 0.25
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.27
rrl 1475487 n.1830C>T non_coding_transcript_exon_variant 0.27
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.31
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.29
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.3
rrl 1475604 n.1947A>C non_coding_transcript_exon_variant 0.3
rrl 1475605 n.1948A>T non_coding_transcript_exon_variant 0.3
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.31
rrl 1475617 n.1960C>G non_coding_transcript_exon_variant 0.29
rrl 1475625 n.1968G>C non_coding_transcript_exon_variant 0.31
rrl 1475637 n.1980T>A non_coding_transcript_exon_variant 0.29
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.29
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.24
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.22
rrl 1475760 n.2103C>T non_coding_transcript_exon_variant 0.32
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.35
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.36
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.43
rrl 1475999 n.2342G>T non_coding_transcript_exon_variant 0.38
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.39
rrl 1476032 n.2375C>T non_coding_transcript_exon_variant 0.41
rrl 1476033 n.2376T>C non_coding_transcript_exon_variant 0.41
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.41
rrl 1476045 n.2388G>C non_coding_transcript_exon_variant 0.44
rrl 1476047 n.2390G>A non_coding_transcript_exon_variant 0.47
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.47
rrl 1476077 n.2420T>C non_coding_transcript_exon_variant 0.29
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.29
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.29
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.29
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.32
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.41
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.41
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.4
rrl 1476580 n.2923G>A non_coding_transcript_exon_variant 0.32
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.28
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.28
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.27
inhA 1673505 c.-697A>T upstream_gene_variant 0.19
inhA 1673517 c.-685G>C upstream_gene_variant 0.19
inhA 1673524 c.-678C>T upstream_gene_variant 0.19
inhA 1673535 c.-667A>G upstream_gene_variant 0.23
inhA 1673565 c.-637G>C upstream_gene_variant 0.33
inhA 1673580 c.-622T>C upstream_gene_variant 0.27
inhA 1673589 c.-613A>G upstream_gene_variant 0.3
inhA 1673595 c.-607A>C upstream_gene_variant 0.26
fabG1 1673596 p.Lys53Glu missense_variant 0.26
inhA 1673604 c.-598G>C upstream_gene_variant 0.24
inhA 1673607 c.-595T>C upstream_gene_variant 0.24
fabG1 1673615 p.Glu59Val missense_variant 0.25
fabG1 1673758 p.Lys107Glu missense_variant 0.17
inhA 1673784 c.-418G>C upstream_gene_variant 0.17
inhA 1673793 c.-409G>A upstream_gene_variant 0.16
inhA 1673799 c.-403T>C upstream_gene_variant 0.18
inhA 1673802 c.-400A>G upstream_gene_variant 0.19
inhA 1673808 c.-394A>G upstream_gene_variant 0.17
inhA 1673841 c.-361A>G upstream_gene_variant 0.16
inhA 1673856 c.-346T>G upstream_gene_variant 0.18
inhA 1673877 c.-325C>T upstream_gene_variant 0.2
inhA 1673901 c.-301A>C upstream_gene_variant 0.17
inhA 1673904 c.-298C>G upstream_gene_variant 0.17
fabG1 1673905 p.Ser156Ala missense_variant 0.17
inhA 1674745 p.Tyr182Ala missense_variant 0.19
inhA 1674756 c.555T>C synonymous_variant 0.21
inhA 1674759 c.558G>C synonymous_variant 0.21
inhA 1674765 c.564C>T synonymous_variant 0.21
inhA 1674774 c.573A>C synonymous_variant 0.25
inhA 1674777 c.576C>A synonymous_variant 0.25
inhA 1674780 c.579T>G synonymous_variant 0.26
inhA 1674792 c.591G>C synonymous_variant 0.27
inhA 1674801 c.600T>C synonymous_variant 0.28
inhA 1674820 c.619_621delCTCinsTTG synonymous_variant 0.25
inhA 1674828 c.627G>A synonymous_variant 0.25
inhA 1674846 p.Ile215Met missense_variant 0.28
inhA 1674870 c.669T>C synonymous_variant 0.21
inhA 1674876 c.675C>G synonymous_variant 0.21
inhA 1674879 c.678T>C synonymous_variant 0.2
inhA 1674888 c.687C>T synonymous_variant 0.16
rpsA 1833532 c.-10A>C upstream_gene_variant 0.18
rpsA 1833568 c.27G>C synonymous_variant 0.33
rpsA 1833589 c.48A>T synonymous_variant 0.34
rpsA 1833595 c.54T>C synonymous_variant 0.32
rpsA 1833613 c.72C>A synonymous_variant 0.35
rpsA 1833619 c.78A>C synonymous_variant 0.35
rpsA 1833661 c.120A>G synonymous_variant 0.32
rpsA 1833667 c.126C>G synonymous_variant 0.3
rpsA 1833703 c.162C>T synonymous_variant 0.29
rpsA 1833724 c.183C>G synonymous_variant 0.24
rpsA 1833727 c.186G>C synonymous_variant 0.23
rpsA 1833745 c.204G>C synonymous_variant 0.22
rpsA 1833760 c.219C>T synonymous_variant 0.22
rpsA 1833790 c.249T>C synonymous_variant 0.26
rpsA 1833793 c.252C>T synonymous_variant 0.25
rpsA 1833802 c.261A>G synonymous_variant 0.26
rpsA 1833808 c.267G>C synonymous_variant 0.25
rpsA 1833811 c.270G>T synonymous_variant 0.26
rpsA 1833832 c.291G>A synonymous_variant 0.3
rpsA 1833838 c.297G>C synonymous_variant 0.28
rpsA 1833841 c.300C>G synonymous_variant 0.28
rpsA 1833847 c.306C>G synonymous_variant 0.31
rpsA 1833856 c.315A>G synonymous_variant 0.29
rpsA 1833859 c.318C>T synonymous_variant 0.29
rpsA 1833874 c.333T>C synonymous_variant 0.29
rpsA 1833895 c.354G>C synonymous_variant 0.3
rpsA 1833928 c.387G>C synonymous_variant 0.26
rpsA 1833949 c.408T>C synonymous_variant 0.28
rpsA 1833964 c.423C>T synonymous_variant 0.28
rpsA 1833970 c.429G>A synonymous_variant 0.28
rpsA 1833979 c.438T>C synonymous_variant 0.29
rpsA 1834000 c.459G>C synonymous_variant 0.29
rpsA 1834015 c.474G>C synonymous_variant 0.32
rpsA 1834021 c.480C>T synonymous_variant 0.31
rpsA 1834102 c.561T>C synonymous_variant 0.27
rpsA 1834105 c.564C>T synonymous_variant 0.27
rpsA 1834150 c.609G>C synonymous_variant 0.17
rpsA 1834153 c.612T>C synonymous_variant 0.17
rpsA 1834154 p.Asn205Gln missense_variant 0.17
rpsA 1834157 c.616T>C synonymous_variant 0.17
rpsA 1834177 c.636A>C synonymous_variant 0.19
rpsA 1834186 c.645C>G synonymous_variant 0.24
rpsA 1834189 c.648G>C synonymous_variant 0.24
rpsA 1834195 c.654G>C synonymous_variant 0.26
rpsA 1834222 c.681T>C synonymous_variant 0.29
rpsA 1834225 c.684C>G synonymous_variant 0.3
rpsA 1834231 c.690T>G synonymous_variant 0.29
rpsA 1834249 c.708T>C synonymous_variant 0.24
rpsA 1834261 c.720A>G synonymous_variant 0.25
rpsA 1834264 c.723G>C synonymous_variant 0.24
rpsA 1834297 c.756C>T synonymous_variant 0.26
rpsA 1834303 c.762T>G synonymous_variant 0.25
rpsA 1834306 c.765T>C synonymous_variant 0.27
rpsA 1834336 c.795C>G synonymous_variant 0.28
rpsA 1834348 c.807T>C synonymous_variant 0.28
rpsA 1834357 c.816T>C synonymous_variant 0.32
rpsA 1834366 c.825A>G synonymous_variant 0.3
rpsA 1834375 c.834G>A synonymous_variant 0.26
rpsA 1834396 c.855G>T synonymous_variant 0.27
rpsA 1834411 c.870T>C synonymous_variant 0.28
rpsA 1834423 c.882G>T synonymous_variant 0.28
rpsA 1834451 c.910T>C synonymous_variant 0.34
rpsA 1834456 c.915T>G synonymous_variant 0.33
rpsA 1834465 c.924T>C synonymous_variant 0.32
rpsA 1834468 c.927A>G synonymous_variant 0.32
rpsA 1834477 c.936C>T synonymous_variant 0.3
rpsA 1834489 c.948T>C synonymous_variant 0.31
rpsA 1834519 c.978G>C synonymous_variant 0.32
rpsA 1834546 c.1005T>C synonymous_variant 0.32
rpsA 1834555 c.1014T>G synonymous_variant 0.32
rpsA 1834603 c.1062G>A synonymous_variant 0.28
rpsA 1834609 c.1068T>C synonymous_variant 0.28
rpsA 1834612 c.1071G>A synonymous_variant 0.29
rpsA 1834633 c.1092A>G synonymous_variant 0.28
rpsA 1834639 c.1098T>C synonymous_variant 0.29
rpsA 1834654 c.1113G>A synonymous_variant 0.24
rpsA 1834690 c.1149T>C synonymous_variant 0.24
rpsA 1834699 p.Glu386Asp missense_variant 0.24
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 0.95
PPE35 2169208 c.1404delC frameshift_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289047 c.195C>T synonymous_variant 1.0
pncA 2289365 c.-125delC upstream_gene_variant 1.0
kasA 2517941 c.-174C>G upstream_gene_variant 0.25
kasA 2517950 c.-165C>G upstream_gene_variant 0.23
kasA 2517962 c.-153C>G upstream_gene_variant 0.26
kasA 2517965 c.-150C>T upstream_gene_variant 0.25
kasA 2517974 c.-141T>C upstream_gene_variant 0.25
kasA 2517983 c.-132T>C upstream_gene_variant 0.22
kasA 2517989 c.-126T>G upstream_gene_variant 0.22
kasA 2517993 c.-122G>T upstream_gene_variant 0.2
kasA 2518594 c.480C>T synonymous_variant 0.17
kasA 2518597 c.483C>G synonymous_variant 0.17
kasA 2518606 c.492G>C synonymous_variant 0.17
kasA 2518609 p.Met165Ile missense_variant 0.17
kasA 2518636 c.522C>A synonymous_variant 0.2
kasA 2518639 c.525G>C synonymous_variant 0.19
kasA 2518642 c.528A>G synonymous_variant 0.19
kasA 2518645 c.531G>C synonymous_variant 0.19
kasA 2518651 c.537C>G synonymous_variant 0.19
kasA 2518657 c.543G>C synonymous_variant 0.18
kasA 2518663 c.549T>C synonymous_variant 0.17
kasA 2518672 c.558G>C synonymous_variant 0.16
kasA 2518714 c.600A>C synonymous_variant 0.18
kasA 2518717 c.603C>G synonymous_variant 0.16
kasA 2518735 c.621C>T synonymous_variant 0.2
kasA 2518747 c.633C>G synonymous_variant 0.19
kasA 2519095 c.981C>G synonymous_variant 0.17
kasA 2519098 c.984C>T synonymous_variant 0.17
kasA 2519104 c.990T>A synonymous_variant 0.19
kasA 2519107 c.993T>C synonymous_variant 0.17
kasA 2519110 p.Asp332Glu missense_variant 0.17
kasA 2519112 p.Gln333Arg missense_variant 0.2
kasA 2519119 c.1005G>C synonymous_variant 0.22
kasA 2519134 c.1020G>A synonymous_variant 0.22
kasA 2519137 c.1023T>G synonymous_variant 0.22
kasA 2519140 c.1026G>A synonymous_variant 0.21
kasA 2519146 c.1032C>A synonymous_variant 0.21
kasA 2519152 c.1038G>C synonymous_variant 0.23
kasA 2519161 c.1047G>A synonymous_variant 0.2
kasA 2519167 c.1053T>G synonymous_variant 0.17
ahpC 2726105 c.-88G>A upstream_gene_variant 1.0
Rv2752c 3065040 c.1150_1152delCTCinsTTG synonymous_variant 0.29
Rv2752c 3065049 c.1143G>A synonymous_variant 0.3
Rv2752c 3065055 c.1137T>G synonymous_variant 0.3
Rv2752c 3065064 c.1128G>C synonymous_variant 0.32
Rv2752c 3065070 c.1122C>A synonymous_variant 0.33
Rv2752c 3065073 c.1119C>G synonymous_variant 0.33
Rv2752c 3065085 c.1105_1107delAGGinsCGC synonymous_variant 0.3
Rv2752c 3065097 c.1095C>T synonymous_variant 0.33
Rv2752c 3065109 c.1081_1083delAGAinsCGG synonymous_variant 0.34
Rv2752c 3065130 c.1062A>G synonymous_variant 0.34
Rv2752c 3065133 c.1059T>C synonymous_variant 0.35
Rv2752c 3065142 c.1050A>C synonymous_variant 0.37
Rv2752c 3065146 p.Phe349Tyr missense_variant 0.36
Rv2752c 3065154 c.1038G>A synonymous_variant 0.33
Rv2752c 3065186 c.1006T>C synonymous_variant 0.22
Rv2752c 3065190 p.Ile334Val missense_variant 0.22
Rv2752c 3065199 p.Gly331Ala missense_variant 0.18
Rv2752c 3065202 c.990T>G synonymous_variant 0.19
Rv2752c 3065205 c.987T>C synonymous_variant 0.19
Rv2752c 3065210 c.982T>C synonymous_variant 0.18
Rv2752c 3065979 c.213T>C synonymous_variant 0.16
Rv2752c 3065993 p.Val67Ile missense_variant 0.18
Rv2752c 3065994 c.198T>C synonymous_variant 0.18
Rv2752c 3065997 c.195C>G synonymous_variant 0.19
Rv2752c 3066002 p.Met64Leu missense_variant 0.19
Rv2752c 3066006 c.186G>C synonymous_variant 0.19
Rv2752c 3066017 c.175C>T synonymous_variant 0.19
Rv2752c 3066024 c.168T>C synonymous_variant 0.19
Rv2752c 3066365 c.-174C>T upstream_gene_variant 0.19
Rv2752c 3066366 c.-175C>G upstream_gene_variant 0.19
Rv2752c 3066387 c.-196G>A upstream_gene_variant 0.18
thyX 3067661 c.285C>A synonymous_variant 0.18
thyX 3067676 c.270C>G synonymous_variant 0.19
thyX 3067679 p.Cys89Leu missense_variant 0.18
thyX 3067685 c.261A>G synonymous_variant 0.19
thyX 3067693 p.Ile85Val missense_variant 0.19
thyX 3067694 c.252G>C synonymous_variant 0.19
thyX 3067718 c.228C>G synonymous_variant 0.19
thyX 3067727 c.219A>C synonymous_variant 0.19
thyX 3067739 c.207T>C synonymous_variant 0.17
thyX 3067742 c.204A>C synonymous_variant 0.18
thyX 3067761 p.Arg62Lys missense_variant 0.18
thyX 3067765 p.Leu61Ile missense_variant 0.18
thyX 3067793 c.153T>C synonymous_variant 0.17
thyX 3067841 c.105G>T synonymous_variant 0.15
thyX 3067886 c.60A>G synonymous_variant 0.17
thyX 3067949 c.-4C>T upstream_gene_variant 0.93
thyA 3073736 p.Ile246Val missense_variant 0.19
thyA 3073854 c.618C>T synonymous_variant 0.15
thyA 3073863 c.609T>C synonymous_variant 0.15
thyA 3073888 p.Ser195Glu missense_variant 0.18
thyA 3073892 c.580T>C synonymous_variant 0.18
thyA 3073905 c.567C>G synonymous_variant 0.17
thyA 3073925 c.547T>C synonymous_variant 0.19
thyA 3073929 c.543T>C synonymous_variant 0.18
thyA 3073944 c.528C>T synonymous_variant 0.19
thyA 3073953 c.519T>C synonymous_variant 0.19
thyA 3073956 c.516G>C synonymous_variant 0.17
thyA 3073959 c.513T>C synonymous_variant 0.16
thyA 3073968 c.504C>G synonymous_variant 0.18
thyA 3073977 c.495A>G synonymous_variant 0.19
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473975 c.-32G>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
whiB7 3568857 c.-178C>T upstream_gene_variant 1.0
rpoA 3877587 c.921A>C synonymous_variant 0.23
rpoA 3877613 p.Ile299Val missense_variant 0.27
rpoA 3877617 c.891G>C synonymous_variant 0.28
rpoA 3877638 c.870T>G synonymous_variant 0.28
rpoA 3877656 c.852T>C synonymous_variant 0.27
rpoA 3877677 p.Ala277Ser missense_variant 0.21
rpoA 3877680 c.828G>C synonymous_variant 0.21
rpoA 3877685 c.823C>T synonymous_variant 0.2
rpoA 3877686 c.822A>G synonymous_variant 0.2
rpoA 3877692 c.816G>C synonymous_variant 0.22
rpoA 3877704 c.804G>T synonymous_variant 0.24
rpoA 3877737 c.771G>C synonymous_variant 0.31
rpoA 3877743 c.765T>C synonymous_variant 0.33
rpoA 3877758 c.750G>C synonymous_variant 0.3
rpoA 3877764 c.744C>G synonymous_variant 0.31
rpoA 3877770 c.738A>G synonymous_variant 0.31
rpoA 3877776 c.732T>C synonymous_variant 0.32
rpoA 3877782 c.726T>C synonymous_variant 0.32
rpoA 3877815 c.693C>T synonymous_variant 0.34
rpoA 3877839 c.669G>C synonymous_variant 0.33
rpoA 3877851 c.657C>T synonymous_variant 0.32
rpoA 3877857 c.651G>A synonymous_variant 0.33
rpoA 3877865 c.643C>T synonymous_variant 0.26
rpoA 3877866 c.642G>C synonymous_variant 0.27
rpoA 3877872 c.636C>T synonymous_variant 0.29
rpoA 3877875 c.633T>C synonymous_variant 0.3
rpoA 3877887 c.621G>C synonymous_variant 0.27
rpoA 3877900 p.Ser203Thr missense_variant 0.21
rpoA 3877905 c.603A>G synonymous_variant 0.22
rpoA 3877908 p.Asn200Ser missense_variant 0.22
rpoA 3877920 c.588G>C synonymous_variant 0.21
rpoA 3877962 c.546G>T synonymous_variant 0.2
rpoA 3878001 c.507A>G synonymous_variant 0.17
rpoA 3878271 c.237T>C synonymous_variant 0.16
rpoA 3878283 p.Glu75Asp missense_variant 0.16
rpoA 3878295 c.213A>G synonymous_variant 0.2
rpoA 3878298 c.210A>G synonymous_variant 0.21
rpoA 3878304 c.204G>C synonymous_variant 0.23
rpoA 3878313 c.195G>C synonymous_variant 0.25
rpoA 3878322 c.186A>G synonymous_variant 0.23
rpoA 3878331 c.177A>C synonymous_variant 0.23
rpoA 3878334 c.174T>C synonymous_variant 0.22
rpoA 3878337 c.171T>C synonymous_variant 0.23
rpoA 3878346 c.162T>C synonymous_variant 0.22
rpoA 3878364 c.144A>C synonymous_variant 0.25
rpoA 3878370 c.138T>C synonymous_variant 0.23
rpoA 3878376 c.132G>C synonymous_variant 0.22
rpoA 3878384 c.124C>T synonymous_variant 0.24
rpoA 3878385 c.123C>G synonymous_variant 0.24
rpoA 3878391 c.117T>G synonymous_variant 0.23
rpoA 3878418 c.90C>T synonymous_variant 0.24
rpoA 3878442 c.66G>C synonymous_variant 0.18
rpoA 3878454 c.54A>G synonymous_variant 0.16
clpC1 4038425 c.2280C>A synonymous_variant 0.15
clpC1 4038456 p.Val750Glu missense_variant 0.16
clpC1 4038486 p.Gly740Asn missense_variant 0.19
clpC1 4038491 c.2214C>T synonymous_variant 0.2
clpC1 4038502 p.Ile735Val missense_variant 0.21
clpC1 4038508 c.2197C>T synonymous_variant 0.22
clpC1 4038518 c.2187G>T synonymous_variant 0.21
clpC1 4038530 p.Glu725Asp missense_variant 0.18
clpC1 4038537 p.Thr723Ser missense_variant 0.18
clpC1 4038539 c.2166G>C synonymous_variant 0.18
clpC1 4038569 c.2136C>T synonymous_variant 0.17
clpC1 4038575 c.2130C>G synonymous_variant 0.16
clpC1 4038596 c.2109A>G synonymous_variant 0.18
clpC1 4038620 c.2085G>A synonymous_variant 0.18
clpC1 4038653 c.2052C>T synonymous_variant 0.16
clpC1 4038692 c.2013C>G synonymous_variant 0.16
clpC1 4038695 c.2010C>G synonymous_variant 0.17
clpC1 4038698 c.2007C>T synonymous_variant 0.17
clpC1 4038701 c.2004G>C synonymous_variant 0.16
clpC1 4038704 c.2001T>C synonymous_variant 0.16
clpC1 4038713 c.1992T>C synonymous_variant 0.18
clpC1 4038740 c.1965G>C synonymous_variant 0.2
clpC1 4038749 c.1956C>T synonymous_variant 0.19
clpC1 4038773 c.1932T>C synonymous_variant 0.2
clpC1 4038782 c.1923G>T synonymous_variant 0.2
clpC1 4038790 c.1915C>T synonymous_variant 0.19
clpC1 4038809 c.1896G>A synonymous_variant 0.22
clpC1 4038812 c.1893T>C synonymous_variant 0.22
clpC1 4038875 c.1830C>G synonymous_variant 0.3
clpC1 4038878 c.1827A>G synonymous_variant 0.3
clpC1 4038893 c.1812C>T synonymous_variant 0.29
clpC1 4038908 c.1797C>G synonymous_variant 0.27
clpC1 4038914 c.1791G>C synonymous_variant 0.29
clpC1 4038923 c.1782A>G synonymous_variant 0.29
clpC1 4038953 c.1752A>G synonymous_variant 0.33
clpC1 4038956 c.1749T>C synonymous_variant 0.38
clpC1 4038965 c.1740T>C synonymous_variant 0.37
clpC1 4038971 c.1734T>C synonymous_variant 0.41
clpC1 4038974 c.1731T>C synonymous_variant 0.38
clpC1 4038989 c.1716T>C synonymous_variant 0.37
clpC1 4038997 c.1708T>C synonymous_variant 0.34
clpC1 4039004 c.1701C>G synonymous_variant 0.34
clpC1 4039022 c.1683A>G synonymous_variant 0.29
clpC1 4039025 c.1680C>G synonymous_variant 0.31
clpC1 4039067 c.1638G>C synonymous_variant 0.24
clpC1 4039085 c.1620A>G synonymous_variant 0.17
clpC1 4039097 c.1608G>C synonymous_variant 0.17
clpC1 4039106 c.1599G>T synonymous_variant 0.16
clpC1 4039112 c.1593C>A synonymous_variant 0.16
clpC1 4039142 c.1563A>G synonymous_variant 0.18
clpC1 4039145 c.1560G>C synonymous_variant 0.19
clpC1 4039169 p.Glu512Asp missense_variant 0.2
clpC1 4039172 c.1533A>G synonymous_variant 0.2
clpC1 4039178 c.1527G>C synonymous_variant 0.19
clpC1 4039183 c.1522T>C synonymous_variant 0.18
clpC1 4039190 c.1515C>G synonymous_variant 0.19
clpC1 4039193 c.1512C>G synonymous_variant 0.2
clpC1 4039223 c.1482C>T synonymous_variant 0.2
clpC1 4039226 c.1479T>C synonymous_variant 0.2
clpC1 4039238 c.1467C>T synonymous_variant 0.2
clpC1 4039243 c.1462C>T synonymous_variant 0.18
clpC1 4039259 c.1446G>A synonymous_variant 0.24
clpC1 4039262 c.1443C>T synonymous_variant 0.25
clpC1 4039268 c.1437C>T synonymous_variant 0.25
clpC1 4039274 c.1431G>C synonymous_variant 0.24
clpC1 4039286 c.1419T>C synonymous_variant 0.2
clpC1 4039298 c.1407T>C synonymous_variant 0.16
clpC1 4039304 c.1401G>A synonymous_variant 0.16
clpC1 4039484 c.1221T>G synonymous_variant 0.16
clpC1 4039508 c.1197G>C synonymous_variant 0.27
clpC1 4039526 c.1179G>A synonymous_variant 0.27
clpC1 4039532 c.1173C>T synonymous_variant 0.28
clpC1 4039553 c.1152C>A synonymous_variant 0.29
clpC1 4039562 c.1143C>G synonymous_variant 0.31
clpC1 4039565 c.1140G>C synonymous_variant 0.32
clpC1 4039576 p.Ala377Ser missense_variant 0.31
clpC1 4039577 c.1128T>C synonymous_variant 0.31
clpC1 4039583 c.1122C>T synonymous_variant 0.31
clpC1 4039622 c.1083C>T synonymous_variant 0.34
clpC1 4039664 c.1041G>C synonymous_variant 0.34
clpC1 4039670 c.1035G>C synonymous_variant 0.33
clpC1 4039694 c.1011G>C synonymous_variant 0.39
clpC1 4039724 c.981A>G synonymous_variant 0.29
clpC1 4039733 c.972G>C synonymous_variant 0.28
clpC1 4039739 c.966C>G synonymous_variant 0.24
clpC1 4039742 c.963C>T synonymous_variant 0.23
clpC1 4039748 c.957G>A synonymous_variant 0.25
clpC1 4039751 c.954A>G synonymous_variant 0.25
clpC1 4039766 c.939T>C synonymous_variant 0.24
clpC1 4039769 c.936C>G synonymous_variant 0.24
clpC1 4039775 c.930G>C synonymous_variant 0.19
clpC1 4039778 c.927A>G synonymous_variant 0.19
clpC1 4039781 c.924G>C synonymous_variant 0.18
clpC1 4039787 c.916_918delTCGinsAGC synonymous_variant 0.19
clpC1 4039796 c.909C>T synonymous_variant 0.19
clpC1 4039805 c.900C>G synonymous_variant 0.2
clpC1 4039817 c.888A>T synonymous_variant 0.19
clpC1 4039820 c.885T>C synonymous_variant 0.18
clpC1 4039826 c.879C>G synonymous_variant 0.19
clpC1 4039831 c.874T>C synonymous_variant 0.17
clpC1 4039832 c.873C>T synonymous_variant 0.19
clpC1 4039850 c.855T>C synonymous_variant 0.19
clpC1 4039865 c.840T>C synonymous_variant 0.18
clpC1 4039898 c.807C>G synonymous_variant 0.26
clpC1 4039931 c.774T>C synonymous_variant 0.27
clpC1 4039937 c.768G>C synonymous_variant 0.25
clpC1 4039943 c.762G>C synonymous_variant 0.24
clpC1 4039946 c.759A>C synonymous_variant 0.25
clpC1 4039949 c.756G>C synonymous_variant 0.24
clpC1 4039952 c.753T>C synonymous_variant 0.23
clpC1 4039955 c.750G>T synonymous_variant 0.23
clpC1 4039958 c.747G>C synonymous_variant 0.25
clpC1 4039964 c.741C>T synonymous_variant 0.26
clpC1 4040000 c.705C>T synonymous_variant 0.34
clpC1 4040015 c.690G>A synonymous_variant 0.35
clpC1 4040021 c.684A>C synonymous_variant 0.34
clpC1 4040024 c.681A>G synonymous_variant 0.35
clpC1 4040033 c.672G>C synonymous_variant 0.35
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.31
clpC1 4040093 c.612C>G synonymous_variant 0.31
clpC1 4040105 c.600C>G synonymous_variant 0.3
clpC1 4040147 c.558A>G synonymous_variant 0.26
clpC1 4040171 c.534C>G synonymous_variant 0.16
clpC1 4040213 p.Ser164Thr missense_variant 0.16
clpC1 4040246 c.459C>G synonymous_variant 0.21
clpC1 4040249 c.456A>G synonymous_variant 0.23
clpC1 4040267 c.438A>G synonymous_variant 0.28
clpC1 4040273 c.432T>C synonymous_variant 0.34
clpC1 4040291 c.414G>C synonymous_variant 0.31
clpC1 4040309 c.396C>T synonymous_variant 0.27
clpC1 4040342 c.363C>G synonymous_variant 0.22
clpC1 4040348 c.357G>C synonymous_variant 0.22
clpC1 4040354 c.351A>G synonymous_variant 0.22
clpC1 4040357 c.348T>C synonymous_variant 0.23
clpC1 4040363 c.342A>C synonymous_variant 0.21
clpC1 4040369 c.336C>G synonymous_variant 0.21
clpC1 4040375 c.330G>C synonymous_variant 0.24
clpC1 4040380 c.325T>C synonymous_variant 0.22
clpC1 4040387 c.318A>G synonymous_variant 0.21
clpC1 4040393 c.312G>C synonymous_variant 0.2
clpC1 4040411 c.294T>C synonymous_variant 0.18
clpC1 4040419 c.286C>T synonymous_variant 0.17
clpC1 4040426 c.279T>C synonymous_variant 0.16
clpC1 4040480 c.225T>C synonymous_variant 0.18
clpC1 4040486 c.219G>C synonymous_variant 0.2
clpC1 4040495 c.210C>A synonymous_variant 0.21
clpC1 4040522 c.183T>C synonymous_variant 0.23
clpC1 4040525 c.180C>T synonymous_variant 0.22
clpC1 4040528 c.177G>C synonymous_variant 0.23
clpC1 4040531 c.174T>C synonymous_variant 0.25
clpC1 4040534 c.171A>G synonymous_variant 0.25
clpC1 4040537 c.168G>C synonymous_variant 0.27
clpC1 4040551 c.154T>C synonymous_variant 0.3
clpC1 4040561 c.144A>G synonymous_variant 0.29
clpC1 4040573 c.132T>A synonymous_variant 0.27
clpC1 4040579 c.126A>G synonymous_variant 0.24
clpC1 4040582 c.123G>C synonymous_variant 0.22
clpC1 4040588 c.117T>C synonymous_variant 0.2
clpC1 4040591 c.114C>T synonymous_variant 0.2
clpC1 4040597 c.108C>T synonymous_variant 0.23
clpC1 4040600 c.103_105delTTAinsCTG synonymous_variant 0.24
clpC1 4040603 c.102T>G synonymous_variant 0.23
clpC1 4040606 c.99T>C synonymous_variant 0.22
panD 4044023 c.259C>T synonymous_variant 1.0
embC 4240642 c.780G>C synonymous_variant 0.16
embC 4240645 c.783G>C synonymous_variant 0.16
embC 4240657 c.795G>C synonymous_variant 0.17
embC 4240660 c.798C>G synonymous_variant 0.18
embC 4240671 p.Thr270Ile missense_variant 0.18
embC 4240678 c.816T>C synonymous_variant 0.19
embC 4240681 c.819G>C synonymous_variant 0.19
embC 4240685 p.Thr275Ala missense_variant 0.19
embC 4240690 c.828G>C synonymous_variant 0.17
embC 4240693 c.831T>C synonymous_variant 0.17
embC 4240698 p.Ala279Gly missense_variant 0.17
embC 4240726 c.864G>C synonymous_variant 0.19
embC 4240729 c.867C>G synonymous_variant 0.19
embC 4242075 p.Arg738Gln missense_variant 1.0
embC 4242309 p.Thr816Ile missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4245125 c.1893G>C synonymous_variant 0.18
embB 4246548 p.Pro12Gln missense_variant 0.21
embB 4246555 c.42G>C synonymous_variant 0.21
embB 4246584 p.Arg24Pro missense_variant 0.19
embB 4247497 c.984T>C synonymous_variant 0.22
embB 4247500 c.987C>G synonymous_variant 0.21
embB 4247506 c.993C>G synonymous_variant 0.25
embB 4247512 c.999T>C synonymous_variant 0.25
embB 4247527 c.1014G>C synonymous_variant 0.21
embB 4247539 c.1026T>C synonymous_variant 0.2
embB 4247550 p.Ala346Asp missense_variant 0.21
embB 4247554 c.1041T>C synonymous_variant 0.22
embB 4247566 c.1053C>G synonymous_variant 0.23
embB 4247572 c.1059A>C synonymous_variant 0.21
embB 4247590 c.1077A>G synonymous_variant 0.21
embB 4247629 c.1116C>G synonymous_variant 0.16
embB 4247632 c.1119C>G synonymous_variant 0.15
embB 4247983 c.1470G>C synonymous_variant 0.13
embB 4248007 c.1494C>A synonymous_variant 0.15
embB 4248070 c.1557T>C synonymous_variant 0.17
embB 4248085 c.1572T>C synonymous_variant 0.22
embB 4248097 c.1584C>G synonymous_variant 0.19
embB 4248118 c.1605T>G synonymous_variant 0.18
embB 4248127 c.1614G>C synonymous_variant 0.17
embB 4248190 c.1677G>C synonymous_variant 0.18
embB 4248200 p.Ile563Val missense_variant 0.18
embB 4248206 p.Ser565Gly missense_variant 0.17
embB 4248211 c.1698G>A synonymous_variant 0.16
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0