Rv0006 - c.1218A>G
Drug resistance types
9 Sensitive
15 RR-TB
78 HR-TB
23 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
41 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 74 |
| La3;lineage4.9 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.9;lineage7 | 4 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2.1 | 8 |
| lineage6.1.1 | 2 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La1.7.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.3.3 | 1 |
| lineage3 | 1 |
| La1.8.1 | 2 |
| La1.7;lineage4.9 | 9 |
| lineage4.3.2.1 | 2 |
| La1.6;La3;lineage4.9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.7.1;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 3 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.2;lineage4.9 | 2 |
| lineage4.4.2 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.8 | 1 |
| La2;lineage2.2 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La2;lineage4.9 | 2 |
| lineage6.1.3 | 1 |
| lineage2.1;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| 3 | |
| La1.2.BCG | 1 |
| lineage2.2.1.2 | 1 |
| lineage2.2.1.1 | 3 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage1.2.2.2 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage3.1.2.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 168 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR137286 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | SRR3675539 | MDR-TB | lineage4.9;lineage7 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR15316079 | Sensitive | lineage2.2.1 | None | ERR9787014 | RR-TB | lineage6.1.1 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR4798504 | RR-TB | lineage3 | None | SRR1791747 | Other | La1.8.1 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | SRR3675235 | HR-TB | lineage4.9 | None | ERR3445502 | HR-TB | lineage4.9;lineage7 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR4816656 | Other | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR10808730 | Other | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR294266 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR21277412 | Sensitive | lineage2.2.1 | None | SRR1180172 | RR-TB | lineage2.2.1 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736834 | HR-TB | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR3283021 | MDR-TB | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR502511 | HR-TB | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | SRR3675441 | RR-TB | lineage4.9 | None | ERR4797264 | HR-TB | lineage4.9 | None | SRR3675555 | MDR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR6046295 | MDR-TB | lineage4.2;lineage4.9 | None | ERR4798099 | HR-TB | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR5535933 | Other | lineage4.9 | None | ERR6866639 | HR-TB | lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693231 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR3675495 | RR-TB | lineage2.1;lineage4.9 | None | SRR3675234 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR3797014 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6511621 | HR-TB | lineage4.9 | None | ERR502524 | MDR-TB | lineage4.9;lineage6.3 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR4796254 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR4797184 | HR-TB | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR15316098 | Sensitive | lineage2.2.1 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | ERR2514692 | Other | None | ERR987722 | MDR-TB | None | ERR6866807 | RR-TB | lineage4.9 | None | ERR4797474 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR3675449 | RR-TB | M.canetti;lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | SRR5341330 | Other | lineage4.9 | None | ERR702405 | HR-TB | lineage4.9 | None | ERR2514821 | Other | lineage2.2.1 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR1172310 | MDR-TB | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR3283024 | HR-TB | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR9119669 | MDR-TB | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR6797690 | Sensitive | lineage1.2.2.2 | None | ERR3799304 | RR-TB | lineage6.1.1 | None | SRR7236177 | Other | La1.8.1 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR124636 | HR-TB | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR1035122 | HR-TB | lineage4.9 | None | ERR323062 | HR-TB | lineage4.9 | None | ERR736865 | MDR-TB | lineage4.3.2;lineage4.9 | None | SRR3675585 | HR-TB | lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | SRR14801759 | MDR-TB | La1.7;lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR323039 | MDR-TB | La2;lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR5311097 | Other | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR1180147 | RR-TB | lineage2.2.1.1 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR1183144 | RR-TB | lineage2.2.1 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR161037 | HR-TB | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR971389 | Other | lineage4.9 | None | ERR1063896 | HR-TB | None |
|---|
