n="2">9287 c.1986G>C synonymous_variant 0.67 levofloxacin moxifloxacin gyrA 9291 c.1990C>T synonymous_variant 1.0 levofloxacin moxifloxacin gyrA 9296 c.1995T>C synonymous_variant 1.0 levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim gyrA 9304 p.Gly668Glu missense_variant 1.0 levofloxacin moxifloxacin gyrA 9308 p.Asp669Glu missense_variant 1.0 levofloxacin moxifloxacin gyrA 9315 c.2014C>T synonymous_variant 0.79 levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim gyrA 9326 c.2025G>T synonymous_variant 0.73 levofloxacin moxifloxacin gyrA 9338 c.2037G>A synonymous_variant 0.75 levofloxacin moxifloxacin gyrA 9341 c.2040C>G synonymous_variant 0.76 levofloxacin moxifloxacin gyrA 9345 c.2044A>C synonymous_variant 0.77 levofloxacin moxifloxacin gyrA 9383 c.2082T>C synonymous_variant 1.0 levofloxacin moxifloxacin gyrA 9386 c.2085T>C synonymous_variant 1.0 levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim gyrA 9395 c.2094G>C synonymous_variant 1.0 levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim gyrA 9419 c.2118T>C synonymous_variant 1.0 levofloxacin moxifloxacin gyrA 9420 p.Ile707Glu missense_variant 1.0 levofloxacin moxifloxacin gyrA 9435 c.2134C>T synonymous_variant 1.0 levofloxacin moxifloxacin gyrA 9638 c.2337C>G synonymous_variant 1.0 levofloxacin moxifloxacin gyrA 9650 c.2349G>C synonymous_variant 1.0 levofloxacin moxifloxacin gyrA 9674 c.2373T>C synonymous_variant 1.0 levofloxacin moxifloxacin gyrA 9701 c.2400T>C synonymous_variant 1.0 levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim gyrA 9704 c.2403T>G synonymous_variant 1.0 levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim gyrA 9708 c.2407T>C synonymous_variant 0.92 levofloxacin moxifloxacin gyrA 9716 c.2415T>C synonymous_variant 1.0 levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim Rv0010c 13884 c.-326A>G upstream_gene_variant 0.8 isoniazid Rv0010c 13890 c.-332T>C upstream_gene_variant 1.0 isoniazid Rv0010c 13893 c.-335T>G upstream_gene_variant 1.0 isoniazid Rv0010c 13894 c.-336C>T upstream_gene_variant 0.75 isoniazid Rv0010c 13903 c.-345A>G upstream_gene_variant 1.0 isoniazid Rv0010c 13909 c.-351G>C upstream_gene_variant 1.0 isoniazid fgd1 490827 c.45C>T synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 490848 c.66A>G synonymous_variant 0.62 pretomanid delamanid Not assoc w R - Interim clofazimine Not assoc w R - Interim fgd1 490854 c.72C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 490868 p.Ala29Gly missense_variant 0.47 pretomanid delamanid clofazimine fgd1 490890 c.108C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 490905 c.123T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 490911 c.129T>G synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 490917 c.135C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 490921 p.Gln47Glu missense_variant 1.0 pretomanid delamanid clofazimine fgd1 490929 c.147C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 490932 c.150T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 490948 p.Ser56Ala missense_variant 1.0 pretomanid delamanid clofazimine fgd1 490971 c.189A>G synonymous_variant 0.97 pretomanid delamanid clofazimine fgd1 490974 c.192T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 490980 p.Asn66Lys missense_variant 1.0 pretomanid delamanid clofazimine fgd1 490983 c.201G>A synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 490988 p.Leu69Gln missense_variant 1.0 pretomanid delamanid clofazimine fgd1 490995 c.213C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 490998 c.216T>G synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491007 c.225G>C synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491013 c.231C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491016 c.234C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491040 c.258C>T synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491043 c.261T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491115 c.333G>C synonymous_variant 0.77 pretomanid delamanid clofazimine fgd1 491121 c.339A>G synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491136 c.354C>T synonymous_variant 0.67 pretomanid delamanid clofazimine fgd1 491144 p.Ala121Glu missense_variant 1.0 pretomanid delamanid clofazimine fgd1 491151 c.369G>A synonymous_variant 0.29 pretomanid delamanid clofazimine fgd1 491166 c.384G>T synonymous_variant 0.67 pretomanid delamanid clofazimine fgd1 491168 p.Phe129Tyr missense_variant 0.67 pretomanid delamanid clofazimine fgd1 491178 c.396G>C synonymous_variant 0.69 pretomanid delamanid clofazimine fgd1 491181 c.399T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491191 p.Gly137Arg missense_variant 1.0 pretomanid delamanid clofazimine fgd1 491196 c.414A>G synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491202 c.420G>C synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491203 p.Gln141Glu missense_variant 1.0 pretomanid delamanid clofazimine fgd1 491212 p.Ser144Leu missense_variant 1.0 pretomanid delamanid clofazimine fgd1 491217 c.435T>C synonymous_variant 0.47 pretomanid delamanid clofazimine fgd1 491223 c.441C>G synonymous_variant 0.53 pretomanid delamanid clofazimine fgd1 491232 c.450T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491265 c.483G>C synonymous_variant 0.5 pretomanid delamanid clofazimine fgd1 491283 p.Asp167Glu missense_variant 0.92 pretomanid delamanid clofazimine fgd1 491290 p.Val170Ile missense_variant 0.67 pretomanid delamanid clofazimine fgd1 491296 p.Val172Ile missense_variant 1.0 pretomanid delamanid clofazimine fgd1 491307 c.525C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491310 c.528C>G synonymous_variant 0.67 pretomanid delamanid clofazimine fgd1 491320 p.Ala180Gln missense_variant 0.67 pretomanid delamanid clofazimine fgd1 491325 c.543G>C synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491607 c.825G>C synonymous_variant 0.8 pretomanid delamanid clofazimine fgd1 491610 c.828A>G synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491613 c.831C>T synonymous_variant 0.8 pretomanid delamanid clofazimine fgd1 491616 c.834A>G synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491620 p.Ile280Val missense_variant 1.0 pretomanid delamanid clofazimine fgd1 491640 c.858G>C synonymous_variant 0.5 pretomanid delamanid clofazimine fgd1 491646 c.864G>C synonymous_variant 0.4 pretomanid delamanid clofazimine fgd1 491649 c.867C>T synonymous_variant 0.37 pretomanid delamanid clofazimine fgd1 491658 c.876A>G synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491661 c.879C>G synonymous_variant 0.32 pretomanid delamanid clofazimine fgd1 491673 c.891A>C synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491676 c.894T>A synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491679 c.897A>G synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491686 p.Thr302Gln missense_variant 1.0 pretomanid delamanid clofazimine fgd1 491697 c.915G>C synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491704 c.922C>T synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491709 c.927A>G synonymous_variant 1.0 pretomanid delamanid clofazimine fgd1 491712 c.930T>C synonymous_variant 1.0 pretomanid delamanid clofazimine mshA 574607 c.-741G>A upstream_gene_variant 1.0 isoniazid ethionamide mshA 574610 c.-738G>A upstream_gene_variant 0.93 isoniazid ethionamide mshA 574616 c.-732G>C upstream_gene_variant 1.0 isoniazid ethionamide mshA 574640 c.-708G>A upstream_gene_variant 1.0 isoniazid ethionamide mshA 574646 c.-702G>A upstream_gene_variant 0.95 isoniazid ethionamide mshA 574650 c.-698A>C upstream_gene_variant 1.0 isoniazid ethionamide mshA 574667 c.-681G>A upstream_gene_variant 0.94 isoniazid ethionamide mshA 574673 c.-675A>G upstream_gene_variant 1.0 isoniazid ethionamide mshA 574676 c.-672G>C upstream_gene_variant 1.0 isoniazid ethionamide mshA 574683 c.-665T>C upstream_gene_variant 1.0 isoniazid Uncertain significance ethionamide mshA 574688 c.-660G>C upstream_gene_variant 1.0 isoniazid Uncertain significance ethionamide Uncertain significance mshA 574694 c.-654C>G upstream_gene_variant 1.0 isoniazid ethionamide mshA 575000 c.-348C>G upstream_gene_variant 1.0 isoniazid ethionamide mshA 575009 c.-339T>C upstream_gene_variant 1.0 isoniazid ethionamide mshA 575011 c.-337G>A upstream_gene_variant 1.0 isoniazid ethionamide mshA 575022 c.-326C>T upstream_gene_variant 1.0 isoniazid ethionamide mshA 575034 c.-314_-312delTTAinsCTG upstream_gene_variant 1.0 isoniazid ethionamide mshA 575042 c.-306T>C upstream_gene_variant 1.0 isoniazid ethionamide mshA 575045 c.-303C>G upstream_gene_variant 1.0 isoniazid ethionamide mshA 575051 c.-297A>G upstream_gene_variant 0.95 isoniazid Uncertain significance ethionamide Uncertain significance mshA 575052 c.-296G>C upstream_gene_variant 1.0 isoniazid ethionamide mshA 575072 c.-276G>C upstream_gene_variant 0.88 isoniazid ethionamide mshA 575075 c.-273T>C upstream_gene_variant 1.0 isoniazid Uncertain significance ethionamide mshA 575081 c.-267A>G upstream_gene_variant 0.88 isoniazid ethionamide mshA 575087 c.-261C>G upstream_gene_variant 0.83 isoniazid ethionamide mshA 575109 c.-239G>T upstream_gene_variant 0.75 isoniazid ethionamide mshA 575114 c.-234G>A upstream_gene_variant 0.73 isoniazid Uncertain significance ethionamide mshA 575117 c.-231T>C upstream_gene_variant 1.0 isoniazid ethionamide mshA 575118 c.-230A>G upstream_gene_variant 1.0 isoniazid Uncertain significance ethionamide mshA 575123 c.-225A>G upstream_gene_variant 0.7 isoniazid ethionamide mshA 575124 c.-224_-222delGGGinsCGT upstream_gene_variant 1.0 isoniazid ethionamide mshA 575144 c.-204T>G upstream_gene_variant 1.0 isoniazid ethionamide mshA 575153 c.-195C>A upstream_gene_variant 0.7 isoniazid Uncertain significance ethionamide Uncertain significance mshA 575161 c.-187_-186delTTinsCC upstream_gene_variant 1.0 isoniazid ethionamide mshA 575536 c.189T>C synonymous_variant 1.0 isoniazid ethionamide mshA 575542 c.195C>G synonymous_variant 0.47 isoniazid ethionamide mshA 575561 p.Met72Val missense_variant 1.0 isoniazid ethionamide mshA 575569 c.222A>G synonymous_variant 0.53 isoniazid ethionamide mshA 575571 p.Ser75Thr missense_variant 0.53 isoniazid ethionamide mshA 575576 c.229C>T synonymous_variant 1.0 isoniazid Not assoc w R - Interim ethionamide Not assoc w R - Interim mshA 575581 c.234C>T synonymous_variant 0.53 isoniazid ethionamide mshA 575587 c.240C>G synonymous_variant 0.53 isoniazid ethionamide mshA 575674 c.327G>C synonymous_variant 0.5 isoniazid ethionamide mshA 575695 c.348C>G synonymous_variant 1.0 isoniazid Not assoc w R - Interim ethionamide mshA 575701 c.354G>A synonymous_variant 0.4 isoniazid ethionamide mshA 575704 c.357T>C synonymous_variant 1.0 isoniazid ethionamide mshA 575705 c.358T>C synonymous_variant 1.0 isoniazid ethionamide mshA 575713 c.366G>A synonymous_variant 1.0 isoniazid ethionamide mshA 575719 c.372C>T synonymous_variant 1.0 isoniazid Not assoc w R - Interim ethionamide Not assoc w R - Interim mshA 575734 c.387T>G synonymous_variant 1.0 isoniazid ethionamide mshA 575746 c.399C>G synonymous_variant 1.0 isoniazid ethionamide mshA 575767 c.420G>A synonymous_variant 0.7 isoniazid ethionamide mshA 575771 p.Val142Ser missense_variant 1.0 isoniazid ethionamide mshA 575779 p.Glu144Asp missense_variant 1.0 isoniazid ethionamide mshA 575780 p.Pro145Ala missense_variant 0.69 isoniazid ethionamide mshA 575821 c.474G>C synonymous_variant 1.0 isoniazid ethionamide mshA 575824 c.477T>G synonymous_variant 1.0 isoniazid ethionamide mshA 575842 c.495G>C synonymous_variant 0.61 isoniazid ethionamide mshA 575845 c.498C>G synonymous_variant 0.59 isoniazid ethionamide mshA 575848 c.501C>T synonymous_variant 0.59 isoniazid ethionamide mshA 575851 c.504C>G synonymous_variant 0.59 isoniazid ethionamide mshA 575864 c.517T>C synonymous_variant 1.0 isoniazid ethionamide mshA 575884 c.537G>C synonymous_variant 1.0 isoniazid ethionamide mshA 575887 c.540G>T synonymous_variant 0.67 isoniazid ethionamide mshA 575890 c.543C>G synonymous_variant 1.0 isoniazid ethionamide mshA 575893 c.546C>G synonymous_variant 1.0 isoniazid ethionamide mshA 575899 c.552G>A synonymous_variant 0.7 isoniazid ethionamide mshA 575916 p.Asp190Val missense_variant 0.74 isoniazid ethionamide ccsA 619507 c.-384A>G upstream_gene_variant 1.0 kanamycin capreomycin amikacin ccsA 619579 c.-312G>C upstream_gene_variant 1.0 kanamycin capreomycin amikacin ccsA 619584 c.-307A>T upstream_gene_variant 0.6 kanamycin capreomycin amikacin ccsA 619588 c.-303C>G upstream_gene_variant 0.38 kanamycin capreomycin amikacin ccsA 619591 c.-300G>C upstream_gene_variant 1.0 kanamycin capreomycin amikacin ccsA 619609 c.-282G>T upstream_gene_variant 0.45 kanamycin capreomycin amikacin ccsA 619624 c.-267C>T upstream_gene_variant 0.56 kanamycin capreomycin amikacin ccsA 619634 c.-257_-255delTCCinsGTG upstream_gene_variant 1.0 kanamycin capreomycin amikacin ccsA 619645 c.-246G>C upstream_gene_variant 0.36 kanamycin capreomycin amikacin ccsA 619654 c.-237A>G upstream_gene_variant 1.0 kanamycin capreomycin amikacin ccsA 619669 c.-222G>C upstream_gene_variant 1.0 kanamycin capreomycin amikacin ccsA 619672 c.-219A>C upstream_gene_variant 1.0 kanamycin capreomycin amikacin ccsA 619684 c.-207G>A upstream_gene_variant 0.67 kanamycin capreomycin amikacin ccsA 619912 p.Val8Ile missense_variant 0.7 kanamycin capreomycin amikacin ccsA 619923 c.33C>G synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 619935 c.45C>T synonymous_variant 0.7 kanamycin capreomycin amikacin ccsA 619953 c.63C>G synonymous_variant 0.7 kanamycin capreomycin amikacin ccsA 619984 c.94C>T synonymous_variant 0.7 kanamycin capreomycin amikacin ccsA 620197 p.Gln103Met missense_variant 1.0 kanamycin capreomycin amikacin ccsA 620238 c.348G>C synonymous_variant 0.79 kanamycin capreomycin amikacin ccsA 620245 c.355T>C synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620249 p.Ser120Cys missense_variant 1.0 kanamycin capreomycin amikacin ccsA 620253 c.363G>C synonymous_variant 0.68 kanamycin capreomycin amikacin ccsA 620254 c.364_366delCTCinsTTG synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620271 c.381C>G synonymous_variant 0.65 kanamycin capreomycin amikacin ccsA 620283 c.393T>C synonymous_variant 0.47 kanamycin capreomycin amikacin ccsA 620284 p.Ala132Pro missense_variant 1.0 kanamycin capreomycin amikacin ccsA 620288 p.Arg133Gln missense_variant 1.0 kanamycin capreomycin amikacin ccsA 620291 p.Tyr134Phe missense_variant 0.53 kanamycin capreomycin amikacin ccsA 620295 c.405G>T synonymous_variant 0.44 kanamycin capreomycin amikacin ccsA 620307 c.417C>G synonymous_variant 0.53 kanamycin capreomycin amikacin ccsA 620310 c.420C>T synonymous_variant 0.47 kanamycin capreomycin amikacin ccsA 620317 p.Val143Leu missense_variant 1.0 kanamycin capreomycin amikacin ccsA 620340 c.450C>G synonymous_variant 0.5 kanamycin capreomycin amikacin ccsA 620343 c.453G>C synonymous_variant 0.53 kanamycin capreomycin amikacin ccsA 620346 c.456C>G synonymous_variant 0.53 kanamycin capreomycin amikacin ccsA 620349 c.459A>T synonymous_variant 0.44 kanamycin capreomycin amikacin ccsA 620362 p.Ala158Thr missense_variant 1.0 kanamycin capreomycin amikacin ccsA 620367 c.477T>C synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620373 c.483C>G synonymous_variant 0.94 kanamycin capreomycin amikacin ccsA 620376 c.486G>C synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620385 c.495G>C synonymous_variant 0.58 kanamycin capreomycin amikacin ccsA 620388 c.498A>G synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620389 c.499C>T synonymous_variant 0.94 kanamycin capreomycin amikacin ccsA 620412 c.522T>C synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620415 c.525T>C synonymous_variant 1.0 kanamycin Not assoc w R - Interim capreomycin Not assoc w R - Interim amikacin Not assoc w R - Interim ccsA 620424 c.534G>C synonymous_variant 0.76 kanamycin capreomycin amikacin ccsA 620433 c.543C>G synonymous_variant 1.0 kanamycin Not assoc w R - Interim capreomycin Not assoc w R - Interim amikacin Not assoc w R - Interim ccsA 620436 c.546T>A synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620439 c.549T>C synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620445 c.555A>G synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620589 c.699G>T synonymous_variant 0.9 kanamycin capreomycin amikacin ccsA 620598 c.708C>G synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620604 c.714C>G synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620607 c.717T>G synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620613 c.723C>G synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620625 c.735A>C synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620631 c.741T>G synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620649 c.759A>G synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620652 c.762C>G synonymous_variant 0.89 kanamycin capreomycin amikacin ccsA 620661 c.771C>G synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620685 c.795G>A synonymous_variant 0.89 kanamycin Not assoc w R - Interim capreomycin Not assoc w R - Interim amikacin ccsA 620698 p.Val270Ile missense_variant 0.89 kanamycin capreomycin amikacin ccsA 620712 c.822G>C synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620721 c.831G>A synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620733 c.843G>C synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620739 c.849A>G synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620742 c.852G>C synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620748 c.858T>C synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620778 c.888T>C synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620781 c.891C>G synonymous_variant 0.97 kanamycin capreomycin amikacin ccsA 620783 p.Ala298Val missense_variant 0.97 kanamycin capreomycin amikacin ccsA 620787 c.897C>A synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620796 c.906C>G synonymous_variant 1.0 kanamycin capreomycin amikacin ccsA 620829 c.939G>C synonymous_variant 0.94 kanamycin capreomycin amikacin ccsA 620835 c.945C>G synonymous_variant 0.93 kanamycin capreomycin amikacin Rv0565c 656052 c.1419A>C synonymous_variant 1.0 ethionamide Rv0565c 656073 c.1396_1398delTTGinsCTC synonymous_variant 1.0 ethionamide Rv0565c 656076 c.1395C>T synonymous_variant 0.79 ethionamide Rv0565c 656085 c.1386A>G synonymous_variant 1.0 ethionamide Rv0565c 656088 c.1383A>G synonymous_variant 1.0 ethionamide Rv0565c 656091 c.1380T>C synonymous_variant 0.79 ethionamide Rv0565c 656112 c.1359C>G synonymous_variant 0.92 ethionamide Rv0565c 656265 c.1206G>C synonymous_variant 0.94 ethionamide Rv0565c 656268 p.Met401Ile missense_variant 0.93 ethionamide Rv0565c 656277 c.1194C>G synonymous_variant 0.47 ethionamide Rv0565c 656292 c.1179G>C synonymous_variant 0.54 ethionamide Rv0565c 656304 c.1167T>C synonymous_variant 0.92 ethionamide Rv0565c 656307 c.1164G>C synonymous_variant 0.58 ethionamide Rv0565c 656310 c.1161T>C synonymous_variant 0.64 ethionamide Rv0565c 656322 c.1149C>T synonymous_variant 0.64 ethionamide Rv0565c 656325 c.1146C>G synonymous_variant 1.0 ethionamide Rv0565c 656334 c.1137A>G synonymous_variant 0.7 ethionamide Rv0565c 656448 p.Ile341Val missense_variant 1.0 ethionamide Rv0565c 656454 c.1017G>C synonymous_variant 1.0 ethionamide Rv0565c 656457 c.1014T>C synonymous_variant 1.0 ethionamide Rv0565c 656469 c.1002T>C synonymous_variant 1.0 ethionamide Rv0565c 656475 c.996A>G synonymous_variant 1.0 ethionamide Rv0565c 656484 c.987T>C synonymous_variant 1.0 ethionamide Rv0565c 656487 c.984T>C synonymous_variant 1.0 ethionamide Not assoc w R - Interim Rv0565c 656493 c.978C>G synonymous_variant 0.9 ethionamide Rv0565c 657183 c.288G>A synonymous_variant 0.91 ethionamide Rv0565c 657189 c.282C>A synonymous_variant 1.0 ethionamide Rv0565c 657193 p.Met93Thr missense_variant 1.0 ethionamide Rv0565c 657196 p.Asp92Ala missense_variant 1.0 ethionamide Rv0565c 657200 p.Thr91Ala missense_variant 1.0 ethionamide Uncertain significance Rv0565c 657210 c.261C>T synonymous_variant 0.82 ethionamide Not assoc w R - Interim Rv0565c 657213 c.258C>T synonymous_variant 0.78 ethionamide Rv0565c 657219 p.Ala84Val missense_variant 1.0 ethionamide Rv0565c 657233 p.Ile80Val missense_variant 1.0 ethionamide Rv0565c 657240 p.Glu77Lys missense_variant 0.82 ethionamide Rv0565c 657252 c.219G>C synonymous_variant 0.82 ethionamide Rv0565c 657255 c.216G>A synonymous_variant 0.81 ethionamide Rv0565c 657259 p.Tyr71Phe missense_variant 1.0 ethionamide Rv0565c 657294 c.177C>A synonymous_variant 0.62 ethionamide Rv0565c 657300 c.171C>G synonymous_variant 0.37 ethionamide Rv0565c 657303 c.168C>G synonymous_variant 0.59 ethionamide Rv0565c 657306 c.165C>T synonymous_variant 0.57 ethionamide Rv0565c 657312 c.159C>T synonymous_variant 0.58 ethionamide Rv0565c 657318 c.153T>C synonymous_variant 0.96 ethionamide Rv0565c 657324 c.147C>G synonymous_variant 0.95 ethionamide Rv0565c 657327 c.144C>G synonymous_variant 0.47 ethionamide Rv0565c 657337 p.Arg45Gln missense_variant 0.92 ethionamide Uncertain significance Rv0565c 657342 c.129T>C synonymous_variant 0.91 ethionamide Rv0565c 657356 p.Ile39Val missense_variant 0.8 ethionamide Rv0565c 657359 p.Thr38Ala missense_variant 0.9 ethionamide Rv0565c 657626 c.-156C>G upstream_gene_variant 0.6 ethionamide Rv0565c 657632 c.-162G>A upstream_gene_variant 0.64 ethionamide Rv0565c 657644 c.-174G>C upstream_gene_variant 0.62 ethionamide Rv0565c 657649 c.-179G>A upstream_gene_variant 1.0 ethionamide Rv0565c 657659 c.-189G>A upstream_gene_variant 0.68 ethionamide Rv0565c 657668 c.-198C>T upstream_gene_variant 0.7 ethionamide Rv0565c 657678 c.-208A>C upstream_gene_variant 1.0 ethionamide Rv0565c 657689 c.-220_-219delCAinsAG upstream_gene_variant 1.0 ethionamide Rv0565c 657695 c.-225C>G upstream_gene_variant 0.79 ethionamide Rv0565c 657725 c.-255G>A upstream_gene_variant 0.68 ethionamide Rv0565c 657732 c.-263_-262delAGinsGA upstream_gene_variant 0.71 ethionamide Rv0565c 657734 c.-264T>C upstream_gene_variant 1.0 ethionamide hadA 731687 c.-243_-237delGCAAGACinsATGTGCAT upstream_gene_variant 0.94 isoniazid hadA 731695 c.-235C>T upstream_gene_variant 0.89 isoniazid hadA 731698 c.-232T>G upstream_gene_variant 0.95 isoniazid hadA 731708 c.-222G>A upstream_gene_variant 0.96 isoniazid hadA 731711 c.-219T>C upstream_gene_variant 0.96 isoniazid hadA 731726 c.-204C>G upstream_gene_variant 0.74 isoniazid hadA 731729 c.-201C>T upstream_gene_variant 0.73 isoniazid hadA 731753 c.-177A>C upstream_gene_variant 0.65 isoniazid hadA 731756 c.-174C>T upstream_gene_variant 0.65 isoniazid hadA 731774 c.-156T>C upstream_gene_variant 1.0 isoniazid hadA 731786 c.-144C>G upstream_gene_variant 0.7 isoniazid hadA 731789 c.-141A>G upstream_gene_variant 1.0 isoniazid hadA 731807 c.-123C>T upstream_gene_variant 0.75 isoniazid hadA 731819 c.-111G>C upstream_gene_variant 0.79 isoniazid hadA 731843 c.-87T>C upstream_gene_variant 1.0 isoniazid hadA 731852 c.-78A>G upstream_gene_variant 1.0 isoniazid hadA 732280 c.351C>G synonymous_variant 0.47 isoniazid hadA 732295 c.366G>C synonymous_variant 0.45 isoniazid hadA 732305 p.Ile126Val missense_variant 1.0 isoniazid hadA 732308 p.Val127Ile missense_variant 1.0 isoniazid hadA 732314 p.Asn129Asp missense_variant 0.5 isoniazid hadA 732319 c.390G>A synonymous_variant 0.48 isoniazid hadA 732321 p.Glu131Ala missense_variant 1.0 isoniazid hadA 732329 p.Leu134Ile missense_variant 1.0 isoniazid hadA 732337 c.408G>A synonymous_variant 0.41 isoniazid hadA 732346 c.417T>C synonymous_variant 0.62 isoniazid hadA 732378 c.450_452dupAGA disruptive_inframe_insertion 1.0 isoniazid hadA 732396 p.Gly156Ala missense_variant 1.0 isoniazid hadA 732398 p.Ala157Thr missense_variant 1.0 isoniazid nusG 734078 c.-176C>G upstream_gene_variant 1.0 rifampicin Uncertain significance nusG 734093 c.-161A>C upstream_gene_variant 1.0 rifampicin nusG 734102 c.-152G>C upstream_gene_variant 0.67 rifampicin nusG 734111 c.-143A>G upstream_gene_variant 1.0 rifampicin nusG 734114 c.-140A>G upstream_gene_variant 1.0 rifampicin nusG 734120 c.-134T>C upstream_gene_variant 1.0 rifampicin Uncertain significance nusG 734123 c.-131C>G upstream_gene_variant 0.55 rifampicin nusG 734129 c.-125G>C upstream_gene_variant 1.0 rifampicin nusG 734132 c.-122G>C upstream_gene_variant 0.55 rifampicin nusG 734135 c.-119G>C upstream_gene_variant 0.57 rifampicin nusG 734147 c.-107T>C upstream_gene_variant 1.0 rifampicin nusG 734183 c.-71C>T upstream_gene_variant 1.0 rifampicin nusG 734186 c.-68G>C upstream_gene_variant 1.0 rifampicin Uncertain significance nusG 734203 c.-51_-50delTGinsCC upstream_gene_variant 0.88 rifampicin nusG 734205 c.-49A>C upstream_gene_variant 1.0 rifampicin nusG 734208 c.-46T>C upstream_gene_variant 0.88 rifampicin nusG 734224 c.-30G>C upstream_gene_variant 1.0 rifampicin nusG 734225 c.-29C>T upstream_gene_variant 1.0 rifampicin nusG 734229 c.-25A>T upstream_gene_variant 1.0 rifampicin nusG 734230 c.-24G>A upstream_gene_variant 1.0 rifampicin nusG 734233 c.-21T>C upstream_gene_variant 1.0 rifampicin nusG 734236 c.-18C>T upstream_gene_variant 1.0 rifampicin nusG 734373 c.120G>C synonymous_variant 0.91 rifampicin nusG 734403 c.150C>T synonymous_variant 0.73 rifampicin nusG 734407 p.Val52Ile missense_variant 1.0 rifampicin nusG 734421 c.168A>C synonymous_variant 1.0 rifampicin nusG 734424 c.171G>C synonymous_variant 1.0 rifampicin nusG 734439 c.186C>G synonymous_variant 0.72 rifampicin nusG 734451 c.198G>C synonymous_variant 1.0 rifampicin nusG 734454 c.201A>G synonymous_variant 0.74 rifampicin nusG 734472 c.219T>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim nusG 734475 c.222T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim nusG 734478 c.225C>G synonymous_variant 0.72 rifampicin Not assoc w R - Interim nusG 734499 c.246G>C synonymous_variant 0.82 rifampicin nusG 734520 c.267C>A synonymous_variant 0.77 rifampicin nusG 734532 c.279A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim nusG 734541 c.288A>G synonymous_variant 0.69 rifampicin Not assoc w R - Interim nusG 734556 c.303C>T synonymous_variant 0.35 rifampicin nusG 734559 c.306T>C synonymous_variant 1.0 rifampicin nusG 734571 c.318C>G synonymous_variant 0.6 rifampicin nusG 734580 c.327T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim nusG 734589 c.336G>C synonymous_variant 1.0 rifampicin nusG 734596 c.343T>C synonymous_variant 1.0 rifampicin nusG 734601 c.348C>G synonymous_variant 0.63 rifampicin nusG 734610 c.357C>G synonymous_variant 1.0 rifampicin nusG 734814 c.561G>C synonymous_variant 1.0 rifampicin nusG 734820 c.567A>G synonymous_variant 0.77 rifampicin Not assoc w R - Interim nusG 734826 c.573A>G synonymous_variant 1.0 rifampicin nusG 734829 c.576C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim nusG 734841 c.588G>T synonymous_variant 1.0 rifampicin nusG 734844 c.591G>A synonymous_variant 0.81 rifampicin nusG 734853 c.600A>G synonymous_variant 1.0 rifampicin nusG 734854 c.601T>C synonymous_variant 1.0 rifampicin nusG 734862 c.609C>G synonymous_variant 0.84 rifampicin nusG 734870 p.Ser206Asn missense_variant 0.84 rifampicin nusG 734895 c.642A>G synonymous_variant 0.83 rifampicin nusG 734910 c.657C>G synonymous_variant 1.0 rifampicin nusG 734913 c.660C>G synonymous_variant 1.0 rifampicin nusG 734931 c.678A>T synonymous_variant 1.0 rifampicin nusG 734940 c.687G>A synonymous_variant 1.0 rifampicin nusG 734943 c.690G>C synonymous_variant 0.81 rifampicin nusG 734950 p.Gly233Thr missense_variant 1.0 rifampicin mmaA3 738309 c.-160G>C upstream_gene_variant 0.9 isoniazid mmaA3 738315 c.-166G>A upstream_gene_variant 0.47 isoniazid mmaA3 738333 c.-184C>G upstream_gene_variant 0.47 isoniazid mmaA3 738339 c.-190G>C upstream_gene_variant 0.61 isoniazid mmaA3 738346 c.-198_-197delCTinsGC upstream_gene_variant 1.0 isoniazid mmaA3 738348 c.-199G>C upstream_gene_variant 0.83 isoniazid rpoB 760046 c.240G>C synonymous_variant 1.0 rifampicin rpoB 760056 c.250_252delCTCinsTTG synonymous_variant 0.73 rifampicin rpoB 760070 c.264T>G synonymous_variant 1.0 rifampicin rpoB 760091 c.285G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760101 c.295T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760112 c.306T>C synonymous_variant 1.0 rifampicin rpoB 760118 c.312T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760121 c.315T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760130 p.Asp108Glu missense_variant 1.0 rifampicin Uncertain significance rpoB 760139 c.333A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760142 c.336C>G synonymous_variant 1.0 rifampicin rpoB 760145 c.339C>G synonymous_variant 0.67 rifampicin rpoB 760181 c.375T>A synonymous_variant 1.0 rifampicin rpoB 760184 c.378A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760196 c.390C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760235 c.429T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760244 c.438G>C synonymous_variant 0.76 rifampicin Not assoc w R - Interim rpoB 760271 c.465C>G synonymous_variant 0.78 rifampicin rpoB 760274 c.468G>A synonymous_variant 0.78 rifampicin rpoB 760295 c.489C>T synonymous_variant 0.81 rifampicin rpoB 760307 c.501T>C synonymous_variant 1.0 rifampicin rpoB 760310 c.504G>C synonymous_variant 1.0 rifampicin rpoB 760328 c.522G>C synonymous_variant 1.0 rifampicin rpoB 760331 c.525G>C synonymous_variant 1.0 rifampicin rpoB 760337 c.531C>G synonymous_variant 0.84 rifampicin rpoB 760340 c.534G>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760358 c.552C>G synonymous_variant 0.74 rifampicin rpoB 760361 c.555T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760370 c.564C>G synonymous_variant 1.0 rifampicin rpoB 760376 p.Asp190Glu missense_variant 1.0 rifampicin Uncertain significance rpoB 760380 p.Thr192Leu missense_variant 1.0 rifampicin rpoB 760412 c.606C>T synonymous_variant 1.0 rifampicin rpoB 760418 c.612G>C synonymous_variant 0.66 rifampicin Not assoc w R - Interim rpoB 760424 c.618C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760430 c.624T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760457 c.651C>T synonymous_variant 0.64 rifampicin Not assoc w R - Interim rpoB 760472 c.666C>T synonymous_variant 0.65 rifampicin rpoB 760475 c.669A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760478 c.672C>T synonymous_variant 0.63 rifampicin Not assoc w R - Interim rpoB 760481 c.675G>T synonymous_variant 1.0 rifampicin rpoB 760484 c.678A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760493 c.687C>G synonymous_variant 0.67 rifampicin rpoB 760520 c.714C>G synonymous_variant 0.59 rifampicin rpoB 760522 p.Ser239Asn missense_variant 1.0 rifampicin Uncertain significance rpoB 760526 c.720G>A synonymous_variant 0.59 rifampicin rpoB 760532 c.726T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760533 p.Val243Thr missense_variant 1.0 rifampicin rpoB 760547 c.741G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760563 p.Arg253Met missense_variant 1.0 rifampicin Uncertain significance rpoB 760580 c.774G>A synonymous_variant 0.73 rifampicin rpoB 760591 p.Val262Ala missense_variant 1.0 rifampicin rpoB 760601 c.795C>T synonymous_variant 0.79 rifampicin rpoB 760611 c.805T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760622 c.816C>T synonymous_variant 0.79 rifampicin rpoB 760646 c.840C>G synonymous_variant 0.97 rifampicin Not assoc w R - Interim rpoB 760649 c.843G>C synonymous_variant 0.79 rifampicin rpoB 760655 c.849A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760661 c.855A>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760670 c.864G>C synonymous_variant 1.0 rifampicin rpoB 760674 c.868T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760679 c.873A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760683 c.877T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760724 c.918T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760730 c.924T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760748 c.942C>G synonymous_variant 0.92 rifampicin rpoB 760757 c.951T>C synonymous_variant 1.0 rifampicin rpoB 760759 p.Val318Ala missense_variant 0.98 rifampicin rpoB 760769 c.963C>G synonymous_variant 1.0 rifampicin rpoB 760793 c.987A>G synonymous_variant 1.0 rifampicin rpoB 760805 c.999G>C synonymous_variant 1.0 rifampicin rpoB 760817 c.1011A>G synonymous_variant 1.0 rifampicin rpoB 760820 c.1014T>C synonymous_variant 1.0 rifampicin rpoB 760826 c.1020C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760830 c.1024T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760841 c.1035T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760845 p.Thr347Pro missense_variant 1.0 rifampicin rpoB 760856 c.1050C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760886 c.1080A>G synonymous_variant 1.0 rifampicin rpoB 760916 c.1110C>G synonymous_variant 0.74 rifampicin rpoB 760919 c.1113C>G synonymous_variant 0.73 rifampicin rpoB 760925 c.1119T>C synonymous_variant 1.0 rifampicin rpoB 760928 c.1122G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760931 c.1125C>G synonymous_variant 1.0 rifampicin rpoB 760937 c.1131G>A synonymous_variant 0.71 rifampicin rpoB 760946 c.1140A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 760973 c.1167G>C synonymous_variant 0.64 rifampicin rpoB 760982 c.1176G>T synonymous_variant 1.0 rifampicin rpoB 760985 c.1179G>T synonymous_variant 1.0 rifampicin rpoB 760991 c.1185G>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761006 c.1200C>T synonymous_variant 1.0 rifampicin rpoB 761015 c.1209G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761021 c.1215G>C synonymous_variant 1.0 rifampicin rpoB 761027 c.1221A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761036 c.1230G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761037 c.1231T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761051 c.1245G>T synonymous_variant 0.69 rifampicin Not assoc w R - Interim rpoB 761057 c.1251G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761060 c.1254C>G synonymous_variant 0.65 rifampicin Not assoc w R - Interim rpoB 761063 c.1257C>G synonymous_variant 0.65 rifampicin Not assoc w R - Interim rpoB 761096 c.1290G>C synonymous_variant 0.66 rifampicin rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.65 rifampicin rpoB 761102 c.1296A>G synonymous_variant 1.0 rifampicin rpoB 761129 c.1323G>C synonymous_variant 0.36 rifampicin Not assoc w R - Interim rpoB 761132 c.1326G>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761133 c.1327_1329delTTGinsCTC synonymous_variant 1.0 rifampicin rpoB 761150 c.1344A>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761168 c.1362C>G synonymous_variant 0.74 rifampicin rpoB 761180 c.1374A>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761189 c.1383T>G synonymous_variant 1.0 rifampicin rpoB 761192 c.1386C>G synonymous_variant 0.73 rifampicin rpoB 761195 c.1389G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761198 c.1392G>C synonymous_variant 0.75 rifampicin Not assoc w R - Interim rpoB 761240 c.1434C>T synonymous_variant 0.72 rifampicin rpoB 761249 c.1443A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761255 c.1449T>C synonymous_variant 1.0 rifampicin rpoB 761261 c.1455G>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761264 c.1458C>G synonymous_variant 0.58 rifampicin Not assoc w R - Interim rpoB 761282 c.1476C>G synonymous_variant 0.63 rifampicin rpoB 761306 c.1500C>G synonymous_variant 0.35 rifampicin rpoB 761327 c.1521A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761330 c.1524G>C synonymous_variant 0.32 rifampicin rpoB 761345 c.1539G>T synonymous_variant 0.71 rifampicin rpoB 761354 c.1548C>T synonymous_variant 1.0 rifampicin rpoB 761360 c.1554T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761362 p.Ser519Thr missense_variant 1.0 rifampicin rpoB 761374 p.Val523Glu missense_variant 1.0 rifampicin rpoB 761414 c.1608A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761423 c.1617T>C synonymous_variant 1.0 rifampicin rpoB 761435 c.1629T>C synonymous_variant 1.0 rifampicin rpoB 761438 c.1632G>C synonymous_variant 1.0 rifampicin rpoB 761444 c.1638T>C synonymous_variant 1.0 rifampicin rpoB 761452 p.Val549Glu missense_variant 1.0 rifampicin rpoB 761457 p.Pro551Ser missense_variant 1.0 rifampicin rpoB 761465 c.1659G>A synonymous_variant 0.84 rifampicin Not assoc w R - Interim rpoB 761471 c.1665C>T synonymous_variant 0.83 rifampicin rpoB 761477 c.1671C>T synonymous_variant 1.0 rifampicin rpoB 761492 c.1686G>C synonymous_variant 1.0 rifampicin rpoB 761504 c.1698C>G synonymous_variant 0.8 rifampicin Not assoc w R - Interim rpoB 761510 c.1704T>C synonymous_variant 1.0 rifampicin rpoB 761531 c.1725C>G synonymous_variant 0.75 rifampicin rpoB 761537 c.1731C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761558 c.1752C>G synonymous_variant 0.71 rifampicin Not assoc w R - Interim rpoB 761570 c.1764T>C synonymous_variant 0.98 rifampicin Not assoc w R - Interim rpoB 761573 c.1767C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761579 c.1773G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761588 c.1782C>T synonymous_variant 0.3 rifampicin rpoB 761606 c.1800C>G synonymous_variant 1.0 rifampicin rpoB 761612 c.1806G>T synonymous_variant 0.98 rifampicin Not assoc w R - Interim rpoB 761615 c.1809A>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761636 c.1830G>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761645 c.1839C>A synonymous_variant 1.0 rifampicin rpoB 761648 c.1842T>C synonymous_variant 1.0 rifampicin rpoB 761666 c.1860G>C synonymous_variant 0.76 rifampicin rpoB 761690 c.1884G>C synonymous_variant 0.74 rifampicin rpoB 761723 c.1917_1919delAGAinsC frameshift_variant&missense_variant 1.0 rifampicin rpoB 761728 c.1923dupC frameshift_variant 0.41 rifampicin rpoB 761732 c.1926C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 761735 c.1929C>G synonymous_variant 0.66 rifampicin rpoB 761750 c.1944G>C synonymous_variant 1.0 rifampicin rpoB 761765 c.1959T>C synonymous_variant 1.0 rifampicin rpoB 761772 p.His656Ala missense_variant 1.0 rifampicin rpoB 761778 p.Asn658Asp missense_variant 1.0 rifampicin rpoB 761791 p.Arg662His missense_variant 1.0 rifampicin rpoB 761813 c.2007T>C synonymous_variant 1.0 rifampicin rpoB 761828 c.2022C>T synonymous_variant 0.75 rifampicin rpoB 761834 c.2028T>C synonymous_variant 1.0 rifampicin rpoB 761848 p.Cys681Ser missense_variant 0.97 rifampicin rpoB 761852 c.2046C>G synonymous_variant 1.0 rifampicin rpoB 761858 c.2052G>C synonymous_variant 1.0 rifampicin rpoB 761873 c.2067A>C synonymous_variant 1.0 rifampicin rpoB 761885 c.2079T>C synonymous_variant 1.0 rifampicin rpoB 761891 c.2085G>C synonymous_variant 0.65 rifampicin rpoB 761906 c.2100C>G synonymous_variant 0.35 rifampicin rpoB 761909 c.2103T>C synonymous_variant 1.0 rifampicin rpoB 761912 c.2106T>C synonymous_variant 1.0 rifampicin rpoB 761913 p.Asp703Gln missense_variant 0.64 rifampicin rpoB 761916 p.Asp704Asn missense_variant 1.0 rifampicin rpoB 761921 c.2115C>T synonymous_variant 0.6 rifampicin rpoB 761930 c.2124G>C synonymous_variant 0.63 rifampicin rpoB 761954 c.2148C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762008 c.2202C>G synonymous_variant 1.0 rifampicin rpoB 762014 c.2208C>T synonymous_variant 1.0 rifampicin rpoB 762047 c.2241G>A synonymous_variant 0.65 rifampicin Not assoc w R - Interim rpoB 762053 c.2247T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762062 c.2256T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762065 c.2259T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762083 c.2277T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762086 c.2280G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762101 c.2295C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762114 p.Ile770Val missense_variant 1.0 rifampicin Uncertain significance rpoB 762131 c.2325C>G synonymous_variant 1.0 rifampicin rpoB 762134 c.2328C>G synonymous_variant 0.82 rifampicin Not assoc w R - Interim rpoB 762143 c.2337T>C synonymous_variant 1.0 rifampicin rpoB 762167 c.2361T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762185 c.2379G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762233 c.2427G>T synonymous_variant 1.0 rifampicin rpoB 762254 c.2448T>G synonymous_variant 1.0 rifampicin rpoB 762257 c.2451C>G synonymous_variant 1.0 rifampicin rpoB 762266 c.2460T>C synonymous_variant 1.0 rifampicin rpoB 762281 c.2475G>A synonymous_variant 0.83 rifampicin rpoB 762284 c.2478G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762293 c.2487T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762317 c.2511A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762338 c.2532T>C synonymous_variant 1.0 rifampicin rpoB 762341 c.2535G>C synonymous_variant 0.86 rifampicin rpoB 762347 c.2541T>C synonymous_variant 1.0 rifampicin rpoB 762362 p.Glu852Asp missense_variant 1.0 rifampicin rpoB 762369 c.2563T>C synonymous_variant 1.0 rifampicin rpoC 762395 c.-975G>C upstream_gene_variant 0.83 rifampicin rpoC 762398 c.-972T>C upstream_gene_variant 1.0 rifampicin rpoC 762401 c.-969G>C upstream_gene_variant 1.0 rifampicin rpoB 762404 c.2598T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 762410 c.-960T>C upstream_gene_variant 1.0 rifampicin rpoB 762416 c.2610A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762431 c.2625C>T synonymous_variant 0.89 rifampicin Not assoc w R - Interim rpoC 762434 c.-936T>C upstream_gene_variant 1.0 rifampicin rpoB 762449 c.2643C>A synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762470 c.2664G>C synonymous_variant 0.88 rifampicin Not assoc w R - Interim rpoB 762491 c.2685T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762509 p.Ala902Pro missense_variant 1.0 rifampicin Uncertain significance rpoC 762512 c.-858C>G upstream_gene_variant 0.91 rifampicin rpoC 762533 c.-837T>C upstream_gene_variant 1.0 rifampicin rpoC 762536 c.-834T>C upstream_gene_variant 1.0 rifampicin rpoC 762537 c.-833T>C upstream_gene_variant 1.0 rifampicin rpoC 762551 c.-819C>T upstream_gene_variant 1.0 rifampicin rpoC 762563 c.-807G>A upstream_gene_variant 0.82 rifampicin rpoC 762776 c.-594C>G upstream_gene_variant 0.67 rifampicin rpoB 762782 c.2976T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762789 p.Leu995Met missense_variant 1.0 rifampicin Uncertain significance rpoC 762794 c.-576C>G upstream_gene_variant 1.0 rifampicin rpoB 762795 p.Asp997Asn missense_variant 0.71 rifampicin Uncertain significance rpoB 762812 c.3006C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762813 p.Met1003Val missense_variant 1.0 rifampicin rpoB 762818 c.3012C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762827 c.3021G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762833 c.3027C>T synonymous_variant 0.72 rifampicin Not assoc w R - Interim rpoB 762857 c.3051C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762860 c.3054G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 762902 c.-468C>T upstream_gene_variant 0.81 rifampicin rpoC 762917 c.-453C>T upstream_gene_variant 0.8 rifampicin rpoB 762926 c.3120C>T synonymous_variant 0.78 rifampicin Not assoc w R - Interim rpoB 762929 c.3123G>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 762962 c.3156C>T synonymous_variant 0.79 rifampicin Not assoc w R - Interim rpoC 762983 c.-387C>G upstream_gene_variant 0.81 rifampicin rpoB 762995 c.3189G>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 763031 c.3225T>C synonymous_variant 1.0 rifampicin Not assoc w R rpoB 763034 c.3228C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 763040 c.3234C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 763050 c.-320C>T upstream_gene_variant 0.68 rifampicin rpoB 763070 c.3264T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 763082 c.3276C>T synonymous_variant 0.72 rifampicin Not assoc w R - Interim rpoB 763085 c.3279C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 763115 c.3309T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoB 763127 c.3321G>C synonymous_variant 0.79 rifampicin Not assoc w R - Interim rpoB 763166 c.3360A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 763169 c.-201A>G upstream_gene_variant 0.85 rifampicin rpoC 763202 c.-168A>C upstream_gene_variant 1.0 rifampicin rpoC 763205 c.-165G>T upstream_gene_variant 1.0 rifampicin rpoC 763206 c.-164_-162delAGTinsTCC upstream_gene_variant 1.0 rifampicin rpoC 763226 c.-144A>G upstream_gene_variant 1.0 rifampicin rpoB 763238 c.3432T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 763241 c.-129G>A upstream_gene_variant 0.7 rifampicin rpoC 763250 c.-120C>T upstream_gene_variant 0.72 rifampicin rpoC 763253 c.-117G>T upstream_gene_variant 1.0 rifampicin rpoC 763262 c.-108C>A upstream_gene_variant 0.67 rifampicin rpoC 763265 c.-105G>A upstream_gene_variant 0.67 rifampicin rpoC 763351 c.-19T>C upstream_gene_variant 1.0 rifampicin Uncertain significance rpoC 763352 c.-18T>A upstream_gene_variant 1.0 rifampicin Uncertain significance rpoC 763402 c.33C>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 763409 c.40_42delCTTinsTTG synonymous_variant 0.69 rifampicin rpoC 763414 c.45T>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 763441 c.72C>T synonymous_variant 1.0 rifampicin rpoC 763444 c.75T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 763456 c.87A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 763486 c.117T>G synonymous_variant 1.0 rifampicin rpoC 763528 c.159G>A synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 763546 c.177A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 763570 c.201G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 763573 c.204G>C synonymous_variant 0.32 rifampicin Not assoc w R - Interim rpoC 763594 c.225C>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 763603 c.234C>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 763618 c.249C>T synonymous_variant 0.67 rifampicin rpoC 763633 c.264T>C synonymous_variant 0.31 rifampicin Not assoc w R - Interim rpoC 763636 c.267T>C synonymous_variant 1.0 rifampicin rpoC 763660 c.291T>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 763669 c.300C>G synonymous_variant 0.72 rifampicin Not assoc w R - Interim rpoC 763675 c.306C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 763703 c.334_336delTCGinsAGC synonymous_variant 0.69 rifampicin rpoC 763709 c.340C>T synonymous_variant 0.72 rifampicin rpoC 763714 c.345G>T synonymous_variant 0.73 rifampicin rpoC 763726 c.357C>T synonymous_variant 0.77 rifampicin rpoC 763732 c.363C>G synonymous_variant 1.0 rifampicin rpoC 763741 c.372C>T synonymous_variant 1.0 rifampicin rpoC 763744 c.375G>C synonymous_variant 1.0 rifampicin rpoC 763765 c.396T>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 763771 c.402C>T synonymous_variant 0.71 rifampicin Not assoc w R - Interim rpoC 763780 c.411C>G synonymous_variant 0.72 rifampicin rpoC 763792 p.Glu141Asp missense_variant 0.74 rifampicin rpoC 763801 c.432C>G synonymous_variant 0.75 rifampicin rpoC 763804 c.435C>T synonymous_variant 0.75 rifampicin Not assoc w R - Interim rpoC 763807 c.438T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 763836 p.Ala156Val missense_variant 1.0 rifampicin rpoC 763851 p.Ala161Gly missense_variant 0.82 rifampicin rpoC 763855 c.486C>T synonymous_variant 0.82 rifampicin rpoC 763858 c.489A>G synonymous_variant 1.0 rifampicin rpoC 763872 p.Gly168Ala missense_variant 1.0 rifampicin rpoC 763876 p.Glu169Asp missense_variant 1.0 rifampicin rpoC 763879 c.510A>G synonymous_variant 1.0 rifampicin rpoC 763888 c.519G>C synonymous_variant 1.0 rifampicin rpoC 763891 c.522G>C synonymous_variant 1.0 rifampicin rpoC 763894 c.525A>G synonymous_variant 1.0 rifampicin rpoC 763936 c.567C>G synonymous_variant 1.0 rifampicin rpoC 763939 c.570G>A synonymous_variant 1.0 rifampicin rpoC 763951 c.582G>A synonymous_variant 0.84 rifampicin rpoC 763963 c.594C>G synonymous_variant 1.0 rifampicin rpoC 763967 p.Gly200Ser missense_variant 0.79 rifampicin rpoC 763972 c.603C>T synonymous_variant 0.74 rifampicin rpoC 763987 c.618C>T synonymous_variant 0.71 rifampicin rpoC 763996 c.627T>C synonymous_variant 1.0 rifampicin rpoC 764005 c.636G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764011 c.642T>C synonymous_variant 0.75 rifampicin rpoC 764024 c.655T>C synonymous_variant 1.0 rifampicin rpoC 764040 p.Ser224Thr missense_variant 1.0 rifampicin rpoC 764044 c.675T>G synonymous_variant 1.0 rifampicin rpoC 764059 c.690G>T synonymous_variant 1.0 rifampicin rpoC 764083 c.714A>G synonymous_variant 1.0 rifampicin rpoC 764101 c.732C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764140 c.771C>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764159 c.790C>T synonymous_variant 0.81 rifampicin rpoC 764167 c.798G>A synonymous_variant 0.83 rifampicin rpoC 764188 c.819A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764195 p.Ser276Ile missense_variant 1.0 rifampicin rpoC 764215 c.846A>C synonymous_variant 1.0 rifampicin rpoC 764218 c.849C>T synonymous_variant 0.76 rifampicin rpoC 764242 c.873C>T synonymous_variant 0.75 rifampicin Not assoc w R - Interim rpoC 764245 c.876C>A synonymous_variant 0.75 rifampicin rpoC 764246 c.877_879delCTCinsTTG synonymous_variant 0.75 rifampicin rpoC 764263 c.894G>C synonymous_variant 0.69 rifampicin rpoC 764266 c.897T>C synonymous_variant 1.0 rifampicin rpoC 764278 c.909A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764293 c.924G>C synonymous_variant 0.7 rifampicin Not assoc w R - Interim rpoC 764317 c.948C>G synonymous_variant 0.6 rifampicin rpoC 764320 c.951C>G synonymous_variant 0.61 rifampicin rpoC 764338 c.969G>A synonymous_variant 0.38 rifampicin Not assoc w R - Interim rpoC 764353 c.984G>C synonymous_variant 0.44 rifampicin rpoC 764365 c.996C>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764377 c.1008C>G synonymous_variant 0.45 rifampicin Not assoc w R - Interim rpoC 764380 c.1011G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764381 c.1012_1013delTCinsAG synonymous_variant 1.0 rifampicin rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764419 c.1050C>G synonymous_variant 0.31 rifampicin rpoC 764428 c.1059G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764431 c.1062G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764434 c.1065A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764446 c.1077T>C synonymous_variant 1.0 rifampicin rpoC 764449 c.1080G>C synonymous_variant 1.0 rifampicin rpoC 764452 c.1083T>C synonymous_variant 1.0 rifampicin rpoC 764458 c.1089G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764461 c.1092A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764497 c.1128A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764503 c.1134G>C synonymous_variant 0.79 rifampicin rpoC 764521 c.1152T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764527 c.1158C>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764536 c.1167G>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764539 c.1170C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764554 c.1185C>T synonymous_variant 1.0 rifampicin rpoC 764560 c.1191T>C synonymous_variant 0.37 rifampicin Not assoc w R - Interim rpoC 764566 c.1197C>G synonymous_variant 0.34 rifampicin Not assoc w R - Interim rpoC 764575 c.1206T>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764578 c.1209C>G synonymous_variant 0.71 rifampicin rpoC 764593 c.1224C>T synonymous_variant 1.0 rifampicin rpoC 764605 c.1236G>A synonymous_variant 0.77 rifampicin rpoC 764626 c.1257C>T synonymous_variant 0.8 rifampicin Not assoc w R - Interim rpoC 764650 c.1281G>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764668 c.1299C>T synonymous_variant 0.7 rifampicin Not assoc w R - Interim rpoC 764686 c.1317C>T synonymous_variant 0.68 rifampicin rpoC 764752 c.1383G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764764 c.1395T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764782 c.1413C>T synonymous_variant 0.68 rifampicin Not assoc w R - Interim rpoC 764797 c.1428G>C synonymous_variant 0.67 rifampicin rpoC 764803 c.1434C>G synonymous_variant 0.68 rifampicin rpoC 764809 c.1440C>T synonymous_variant 1.0 rifampicin Not assoc w R rpoC 764815 c.1446A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764827 c.1458G>C synonymous_variant 0.33 rifampicin Not assoc w R - Interim rpoC 764858 c.1489T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764872 c.1503A>G synonymous_variant 0.38 rifampicin Not assoc w R - Interim rpoC 764887 c.1518G>C synonymous_variant 0.52 rifampicin Not assoc w R - Interim rpoC 764888 c.1519_1521delTTGinsCTC synonymous_variant 1.0 rifampicin rpoC 764896 c.1527C>T synonymous_variant 0.59 rifampicin rpoC 764902 c.1533C>T synonymous_variant 0.6 rifampicin rpoC 764911 c.1542A>G synonymous_variant 1.0 rifampicin rpoC 764923 c.1554A>G synonymous_variant 0.67 rifampicin Not assoc w R - Interim rpoC 764932 c.1563C>G synonymous_variant 1.0 rifampicin rpoC 764948 c.1579T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 764968 c.1599T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765007 c.1638T>G synonymous_variant 0.72 rifampicin Not assoc w R - Interim rpoC 765008 c.1639T>C synonymous_variant 0.72 rifampicin Not assoc w R - Interim rpoC 765013 c.1644C>T synonymous_variant 0.76 rifampicin Not assoc w R - Interim rpoC 765019 c.1650A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765040 c.1671T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765041 c.1672T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765047 c.1678T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765052 c.1683C>G synonymous_variant 0.58 rifampicin Not assoc w R - Interim rpoC 765053 c.1684_1686delTCCinsAGT synonymous_variant 1.0 rifampicin rpoC 765065 c.1696C>T synonymous_variant 0.53 rifampicin rpoC 765073 c.1704G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765076 c.1707A>G synonymous_variant 1.0 rifampicin rpoC 765082 c.1713G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765089 c.1720T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765223 c.1854G>C synonymous_variant 1.0 rifampicin rpoC 765233 p.Ala622Ser missense_variant 1.0 rifampicin rpoC 765247 c.1878C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765248 c.1879T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765251 c.1882_1884delAGCinsTCG synonymous_variant 1.0 rifampicin rpoC 765278 c.1909C>T synonymous_variant 0.96 rifampicin rpoC 765283 c.1914C>G synonymous_variant 0.96 rifampicin Not assoc w R - Interim rpoC 765292 c.1923G>T synonymous_variant 1.0 rifampicin rpoC 765300 p.Val644Ala missense_variant 1.0 rifampicin Uncertain significance rpoC 765319 c.1950A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765328 p.His653Gln missense_variant 1.0 rifampicin Uncertain significance rpoC 765330 p.Ser654Asn missense_variant 0.85 rifampicin Uncertain significance rpoC 765334 c.1965C>T synonymous_variant 0.82 rifampicin rpoC 765343 c.1974G>A synonymous_variant 0.74 rifampicin rpoC 765352 c.1983G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765367 c.1998C>G synonymous_variant 0.72 rifampicin rpoC 765370 c.2001G>C synonymous_variant 0.71 rifampicin Not assoc w R - Interim rpoC 765383 p.Met672Leu missense_variant 1.0 rifampicin Uncertain significance rpoC 765391 c.2022C>T synonymous_variant 0.65 rifampicin rpoC 765404 p.Leu679Val missense_variant 0.37 rifampicin rpoC 765409 c.2040T>C synonymous_variant 1.0 rifampicin rpoC 765412 c.2043T>C synonymous_variant 0.59 rifampicin rpoC 765421 c.2052C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765452 p.Ala695Ser missense_variant 0.67 rifampicin rpoC 765466 c.2097C>T synonymous_variant 0.63 rifampicin rpoC 765478 c.2109T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765493 c.2124G>C synonymous_variant 0.62 rifampicin rpoC 765499 c.2130C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765508 c.2139C>G synonymous_variant 0.7 rifampicin Not assoc w R - Interim rpoC 765517 c.2148C>G synonymous_variant 0.73 rifampicin Not assoc w R - Interim rpoC 765529 c.2160C>T synonymous_variant 1.0 rifampicin rpoC 765541 c.2172C>G synonymous_variant 1.0 rifampicin rpoC 765553 c.2184C>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765556 c.2187G>C synonymous_variant 1.0 rifampicin rpoC 765562 c.2193G>C synonymous_variant 0.8 rifampicin rpoC 765578 c.2209C>T synonymous_variant 0.84 rifampicin rpoC 765622 p.Glu751Asp missense_variant 0.83 rifampicin rpoC 765625 c.2256C>T synonymous_variant 1.0 rifampicin rpoC 765628 c.2259G>C synonymous_variant 0.84 rifampicin Not assoc w R - Interim rpoC 765658 c.2289C>T synonymous_variant 0.82 rifampicin Not assoc w R - Interim rpoC 765700 c.2331T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765728 p.Gln787Lys missense_variant 0.79 rifampicin rpoC 765734 c.2365T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765739 c.2370G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765752 p.Asp795Ser missense_variant 0.76 rifampicin rpoC 765772 c.2403C>G synonymous_variant 0.99 rifampicin rpoC 765784 c.2415C>G synonymous_variant 0.98 rifampicin rpoC 765790 c.2421C>T synonymous_variant 0.8 rifampicin Not assoc w R - Interim rpoC 765793 c.2424C>G synonymous_variant 0.98 rifampicin rpoC 765796 c.2427C>T synonymous_variant 0.98 rifampicin rpoC 765814 c.2445A>G synonymous_variant 0.98 rifampicin Not assoc w R - Interim rpoC 765826 c.2457T>C synonymous_variant 0.99 rifampicin Not assoc w R - Interim rpoC 765835 c.2466C>T synonymous_variant 0.99 rifampicin Not assoc w R - Interim rpoC 765883 c.2514C>G synonymous_variant 1.0 rifampicin rpoC 765886 c.2517C>G synonymous_variant 1.0 rifampicin rpoC 765892 c.2523T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765904 c.2535C>T synonymous_variant 0.74 rifampicin rpoC 765934 c.2565C>T synonymous_variant 0.79 rifampicin rpoC 765967 c.2598C>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 765982 c.2613C>G synonymous_variant 1.0 rifampicin rpoC 765994 c.2625A>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 766012 c.2643C>G synonymous_variant 0.76 rifampicin Not assoc w R - Interim rpoC 766021 c.2652G>C synonymous_variant 1.0 rifampicin rpoC 766061 p.Val898Ile missense_variant 0.74 rifampicin rpoC 766082 p.Ala905Gln missense_variant 1.0 rifampicin rpoC 766093 c.2724C>A synonymous_variant 0.72 rifampicin rpoC 766095 p.Thr909Ser missense_variant 0.72 rifampicin rpoC 766105 c.2736C>T synonymous_variant 0.74 rifampicin rpoC 766123 c.2754C>A synonymous_variant 0.81 rifampicin rpoC 766129 c.2760C>G synonymous_variant 1.0 rifampicin rpoC 766135 c.2766G>A synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 766141 c.2772C>T synonymous_variant 1.0 rifampicin rpoC 766142 c.2773C>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 766147 c.2778C>T synonymous_variant 0.67 rifampicin rpoC 766148 p.Thr927Ala missense_variant 0.67 rifampicin Uncertain significance rpoC 766270 c.2901G>C synonymous_variant 0.75 rifampicin rpoC 766273 c.2904T>C synonymous_variant 1.0 rifampicin rpoC 766274 p.Ala969Thr missense_variant 1.0 rifampicin rpoC 766280 p.Ser971Gly missense_variant 1.0 rifampicin rpoC 766288 c.2919C>G synonymous_variant 1.0 rifampicin rpoC 766309 c.2940G>A synonymous_variant 0.78 rifampicin rpoC 766315 c.2946C>G synonymous_variant 0.78 rifampicin rpoC 766321 c.2952C>G synonymous_variant 0.77 rifampicin rpoC 766348 c.2979A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 766369 c.3000C>G synonymous_variant 0.71 rifampicin rpoC 766381 c.3012C>T synonymous_variant 1.0 rifampicin rpoC 766384 c.3015A>G synonymous_variant 0.99 rifampicin rpoC 766393 c.3024C>G synonymous_variant 0.69 rifampicin rpoC 766402 c.3033C>G synonymous_variant 0.69 rifampicin rpoC 766408 c.3039C>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 766426 c.3057C>T synonymous_variant 1.0 rifampicin rpoC 766456 c.3087C>G synonymous_variant 0.72 rifampicin rpoC 766486 c.3117A>G synonymous_variant 1.0 rifampicin rpoC 766492 c.3123T>C synonymous_variant 1.0 rifampicin rpoC 766504 c.3135G>C synonymous_variant 0.8 rifampicin rpoC 766522 c.3153C>G synonymous_variant 1.0 rifampicin rpoC 766528 c.3159T>C synonymous_variant 1.0 rifampicin rpoC 766530 p.Arg1054Gln missense_variant 0.79 rifampicin rpoC 766549 c.3180G>C synonymous_variant 1.0 rifampicin rpoC 766573 c.3204T>C synonymous_variant 1.0 rifampicin rpoC 766585 c.3216T>C synonymous_variant 1.0 rifampicin rpoC 766594 c.3225G>C synonymous_variant 1.0 rifampicin rpoC 766607 p.Ile1080Leu missense_variant 1.0 rifampicin rpoC 766630 c.3261G>T synonymous_variant 1.0 rifampicin rpoC 766660 c.3291G>A synonymous_variant 0.9 rifampicin rpoC 766666 c.3297C>G synonymous_variant 0.9 rifampicin rpoC 766672 c.3303T>C synonymous_variant 1.0 rifampicin rpoC 766700 c.3331C>T synonymous_variant 0.84 rifampicin rpoC 766726 c.3357T>C synonymous_variant 1.0 rifampicin rpoC 766733 c.3364C>T synonymous_variant 0.77 rifampicin rpoC 766738 c.3369G>C synonymous_variant 1.0 rifampicin rpoC 766741 c.3372G>C synonymous_variant 0.74 rifampicin rpoC 766747 c.3378C>T synonymous_variant 0.73 rifampicin rpoC 766750 c.3381C>G synonymous_variant 0.71 rifampicin rpoC 766765 c.3396A>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 766774 c.3405T>C synonymous_variant 1.0 rifampicin rpoC 766798 c.3429C>G synonymous_variant 0.67 rifampicin Not assoc w R - Interim rpoC 766801 c.3432C>G synonymous_variant 1.0 rifampicin rpoC 766804 c.3435A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 766843 c.3474T>G synonymous_variant 0.57 rifampicin Not assoc w R - Interim rpoC 766861 c.3492G>C synonymous_variant 0.44 rifampicin Not assoc w R - Interim rpoC 766864 c.3495G>C synonymous_variant 1.0 rifampicin rpoC 766876 c.3507C>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 766882 c.3513C>T synonymous_variant 0.42 rifampicin Not assoc w R - Interim rpoC 766883 p.Ser1172Ala missense_variant 0.56 rifampicin Uncertain significance rpoC 766894 c.3525T>C synonymous_variant 1.0 rifampicin rpoC 766895 c.3526T>C synonymous_variant 1.0 rifampicin rpoC 766900 c.3531T>C synonymous_variant 1.0 rifampicin rpoC 766903 c.3534C>T synonymous_variant 0.59 rifampicin rpoC 766918 c.3549C>T synonymous_variant 0.64 rifampicin Not assoc w R - Interim rpoC 766933 c.3564A>G synonymous_variant 1.0 rifampicin rpoC 766945 c.3576A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 766963 c.3594T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 766972 c.3603G>C synonymous_variant 0.38 rifampicin rpoC 766996 c.3627C>G synonymous_variant 1.0 rifampicin rpoC 767002 c.3633G>C synonymous_variant 0.64 rifampicin Not assoc w R - Interim rpoC 767009 c.3640_3642delTCGinsAGC synonymous_variant 1.0 rifampicin rpoC 767014 c.3645G>C synonymous_variant 1.0 rifampicin rpoC 767033 c.3664_3666delTCGinsAGT synonymous_variant 1.0 rifampicin rpoC 767059 c.3690T>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 767062 c.3693C>A synonymous_variant 1.0 rifampicin rpoC 767098 c.3729T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 767119 c.3750A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 767134 c.3765C>A synonymous_variant 1.0 rifampicin rpoC 767149 c.3780C>T synonymous_variant 0.74 rifampicin Not assoc w R - Interim rpoC 767158 c.3789T>A synonymous_variant 1.0 rifampicin rpoC 767167 c.3798C>G synonymous_variant 0.64 rifampicin Not assoc w R - Interim rpoC 767180 p.Ala1271Gln missense_variant 1.0 rifampicin rpoC 767191 c.3822C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 767206 c.3837C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 767209 c.3840T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 767212 c.3843G>C synonymous_variant 0.35 rifampicin rpoC 767221 c.3852C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 767230 c.3861G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 767233 c.3864T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 767263 c.3894T>G synonymous_variant 1.0 rifampicin rpoC 767264 p.Ala1299Gln missense_variant 1.0 rifampicin rpoC 767278 c.3909T>C synonymous_variant 1.0 rifampicin rpoC 767281 c.3912C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoC 767284 c.3915C>T synonymous_variant 1.0 rifampicin mmpL5 775909 p.Leu858Phe missense_variant 1.0 bedaquiline clofazimine mmpL5 775910 c.2571G>A synonymous_variant 0.88 bedaquiline clofazimine mmpL5 775916 c.2565T>G synonymous_variant 1.0 bedaquiline clofazimine mmpL5 775921 c.2560C>T synonymous_variant 1.0 bedaquiline clofazimine mmpL5 775937 c.2544G>C synonymous_variant 1.0 bedaquiline clofazimine mmpL5 775940 c.2541C>T synonymous_variant 0.86 bedaquiline clofazimine mmpL5 775943 c.2538C>G synonymous_variant 1.0 bedaquiline clofazimine mmpL5 775946 c.2535C>G synonymous_variant 0.69 bedaquiline clofazimine mmpL5 775951 c.2530C>T synonymous_variant 0.68 bedaquiline clofazimine mmpL5 775961 c.2520C>G synonymous_variant 0.9 bedaquiline clofazimine mmpL5 775966 p.Ala839Ser missense_variant 0.84 bedaquiline clofazimine mmpL5 775975 c.2506T>C synonymous_variant 0.97 bedaquiline clofazimine mmpL5 775981 p.Leu834Met missense_variant 0.97 bedaquiline clofazimine mmpL5 775997 c.2484T>C synonymous_variant 0.96 bedaquiline clofazimine mmpL5 776000 p.Leu827Ile missense_variant 0.7 bedaquiline clofazimine mmpL5 776009 c.2472A>G synonymous_variant 0.97 bedaquiline clofazimine mmpL5 776030 c.2451G>T synonymous_variant 0.4 bedaquiline clofazimine mmpL5 776036 c.2445G>C synonymous_variant 0.88 bedaquiline clofazimine mmpL5 776039 c.2442C>G synonymous_variant 0.52 bedaquiline clofazimine mmpL5 776053 c.2428T>C synonymous_variant 0.5 bedaquiline clofazimine mmpL5 776056 p.Val809Leu missense_variant 0.8 bedaquiline clofazimine mmpL5 777133 p.Val450Ile missense_variant 1.0 bedaquiline clofazimine mmpL5 777155 c.1326G>A synonymous_variant 0.8 bedaquiline clofazimine mmpL5 777158 c.1323C>G synonymous_variant 1.0 bedaquiline clofazimine mmpL5 777164 c.1317C>G synonymous_variant 0.8 bedaquiline clofazimine mmpL5 777170 c.1311T>C synonymous_variant 1.0 bedaquiline clofazimine mmpL5 777173 c.1308C>G synonymous_variant 1.0 bedaquiline clofazimine mmpL5 777176 p.Glu435Asp missense_variant 1.0 bedaquiline clofazimine mmpL5 777191 c.1290C>G synonymous_variant 1.0 bedaquiline clofazimine mmpL5 777194 c.1287A>G synonymous_variant 1.0 bedaquiline clofazimine mmpL5 777206 c.1275A>G synonymous_variant 0.64 bedaquiline clofazimine mmpL5 777212 p.Ala423Thr missense_variant 0.7 bedaquiline clofazimine rpsL 781571 c.12C>T synonymous_variant 1.0 streptomycin rpsL 781595 c.36T>C synonymous_variant 1.0 streptomycin rpsL 781598 c.39G>C synonymous_variant 0.74 streptomycin rpsL 781605 p.Ile16Val missense_variant 1.0 streptomycin Uncertain significance rpsL 781608 p.Ser17Ala missense_variant 1.0 streptomycin rpsL 781616 c.57C>T synonymous_variant 0.72 streptomycin rpsL 781628 c.69T>C synonymous_variant 1.0 streptomycin Not assoc w R - Interim rpsL 781655 c.96T>C synonymous_variant 1.0 streptomycin rpsL 781658 c.99A>G synonymous_variant 0.7 streptomycin rpsL 781682 c.123T>C synonymous_variant 0.76 streptomycin rpsL 781715 c.156T>C synonymous_variant 1.0 streptomycin rpsL 781718 c.159C>G synonymous_variant 0.77 streptomycin rpsL 781721 c.162C>T synonymous_variant 0.76 streptomycin rpsL 781728 c.169T>C synonymous_variant 1.0 streptomycin rpsL 781736 c.177T>C synonymous_variant 1.0 streptomycin rpsL 781751 c.192G>C synonymous_variant 0.8 streptomycin rpsL 781754 c.195G>C synonymous_variant 1.0 streptomycin rpsL 781760 c.201T>C synonymous_variant 1.0 streptomycin rpsL 781766 c.207C>T synonymous_variant 0.75 streptomycin Not assoc w R - Interim rpsL 781772 c.213C>G synonymous_variant 1.0 streptomycin rpsL 781793 c.234G>C synonymous_variant 0.79 streptomycin rpsL 781808 c.249C>T synonymous_variant 1.0 streptomycin rpsL 781814 c.255C>T synonymous_variant 0.81 streptomycin rpsL 781832 c.273T>G synonymous_variant 1.0 streptomycin rpsL 781835 c.276T>C synonymous_variant 0.8 streptomycin Not assoc w R - Interim rpsL 781859 c.300T>G synonymous_variant 0.77 streptomycin rpsL 781865 c.306G>C synonymous_variant 1.0 streptomycin rpsL 781868 c.309T>C synonymous_variant 1.0 streptomycin rpsL 781871 c.312G>C synonymous_variant 1.0 streptomycin rpsL 781883 c.324G>A synonymous_variant 0.7 streptomycin rpsL 781886 c.327C>T synonymous_variant 0.68 streptomycin rpsL 781892 c.333A>G synonymous_variant 1.0 streptomycin rpsL 781898 c.339A>T synonymous_variant 1.0 streptomycin rpsL 781916 c.357T>C synonymous_variant 1.0 streptomycin rpsL 781929 p.Gly124Ser missense_variant 1.0 streptomycin Uncertain significance rpsL 781933 c.374G>A splice_region_variant&stop_retained_variant 0.73 streptomycin rplC 800516 c.-293G>T upstream_gene_variant 1.0 linezolid rplC 800540 c.-269T>C upstream_gene_variant 1.0 linezolid rplC 800546 c.-263T>C upstream_gene_variant 1.0 linezolid rplC 800567 c.-242A>G upstream_gene_variant 1.0 linezolid rplC 800579 c.-230C>T upstream_gene_variant 0.7 linezolid rplC 800582 c.-227C>T upstream_gene_variant 1.0 linezolid rplC 800612 c.-197A>G upstream_gene_variant 1.0 linezolid rplC 800618 c.-191T>C upstream_gene_variant 1.0 linezolid rplC 800621 c.-188G>A upstream_gene_variant 0.68 linezolid rplC 800627 c.-182C>T upstream_gene_variant 1.0 linezolid rplC 800648 c.-161A>G upstream_gene_variant 1.0 linezolid rplC 800654 c.-155T>C upstream_gene_variant 1.0 linezolid rplC 800693 c.-116A>G upstream_gene_variant 1.0 linezolid rplC 800703 c.-106T>C upstream_gene_variant 1.0 linezolid rplC 800714 c.-95C>T upstream_gene_variant 0.72 linezolid rplC 800715 c.-94A>C upstream_gene_variant 1.0 linezolid rplC 800723 c.-86C>G upstream_gene_variant 1.0 linezolid rplC 800744 c.-65G>C upstream_gene_variant 0.53 linezolid rplC 800745 c.-64_-62delCTCinsTTG upstream_gene_variant 0.51 linezolid rplC 800759 c.-50C>T upstream_gene_variant 0.57 linezolid rplC 800762 c.-47T>G upstream_gene_variant 0.59 linezolid rplC 800771 c.-38C>T upstream_gene_variant 0.42 linezolid rplC 800794 c.-15A>G upstream_gene_variant 0.34 linezolid rplC 800796 c.-13A>G upstream_gene_variant 0.34 linezolid rplC 800798 c.-11_-8delTGGAinsC upstream_gene_variant 1.0 linezolid rplC 800806 c.-3G>T upstream_gene_variant 0.54 linezolid rplC 800807 c.-2_-1insT upstream_gene_variant 0.56 linezolid rplC 800814 c.6A>G synonymous_variant 1.0 linezolid rplC 800815 p.Arg3Ser missense_variant 0.6 linezolid rplC 800820 c.12G>A synonymous_variant 0.6 linezolid rplC 800829 c.21C>G synonymous_variant 0.59 linezolid rplC 800844 c.36T>C synonymous_variant 1.0 linezolid rplC 800856 c.48A>G synonymous_variant 0.71 linezolid rplC 800865 c.57A>G synonymous_variant 1.0 linezolid rplC 800867 p.Ser20Asn missense_variant 1.0 linezolid rplC 800872 c.64_66delAGAinsCGG synonymous_variant 0.69 linezolid rplC 800880 c.72A>G synonymous_variant 1.0 linezolid rplC 800901 c.93C>G synonymous_variant 0.77 linezolid rplC 800910 c.102C>T synonymous_variant 0.79 linezolid rplC 800913 c.105G>A synonymous_variant 0.79 linezolid rplC 800916 c.108A>G synonymous_variant 1.0 linezolid rplC 800919 c.111C>G synonymous_variant 0.81 linezolid rplC 800931 c.123G>C synonymous_variant 0.83 linezolid rplC 800934 c.126C>G synonymous_variant 1.0 linezolid rplC 800937 c.129A>G synonymous_variant 1.0 linezolid rplC 800946 c.138T>A synonymous_variant 1.0 linezolid rplC 800949 c.141T>C synonymous_variant 1.0 linezolid rplC 800962 p.Leu52Val missense_variant 0.81 linezolid rplC 800970 c.162T>C synonymous_variant 1.0 linezolid Not assoc w R - Interim rplC 801222 c.414T>C synonymous_variant 0.53 linezolid rplC 801228 c.420T>C synonymous_variant 0.53 linezolid rplC 801231 c.423C>T synonymous_variant 0.58 linezolid rplC 801246 c.438C>T synonymous_variant 1.0 linezolid rplC 801255 c.447C>A synonymous_variant 1.0 linezolid rplC 801279 c.471G>C synonymous_variant 1.0 linezolid rplC 801285 c.477G>A synonymous_variant 1.0 linezolid rplC 801309 c.501C>G synonymous_variant 0.96 linezolid rplC 801312 c.504G>C synonymous_variant 1.0 linezolid rplC 801324 c.516T>C synonymous_variant 1.0 linezolid rplC 801330 c.522G>T synonymous_variant 0.65 linezolid rplC 801333 c.525G>C synonymous_variant 0.63 linezolid rplC 801339 c.531T>G synonymous_variant 1.0 linezolid rplC 801341 p.Leu178Gln missense_variant 1.0 linezolid rplC 801348 c.540T>G synonymous_variant 1.0 linezolid rplC 801349 p.Leu181Val missense_variant 0.61 linezolid rplC 801357 c.549T>C synonymous_variant 1.0 linezolid rplC 801367 p.Ala187Thr missense_variant 0.39 linezolid rplC 801372 c.564G>A synonymous_variant 0.6 linezolid rplC 801402 c.594T>C synonymous_variant 1.0 linezolid rplC 801405 c.597T>C synonymous_variant 1.0 linezolid rplC 801423 c.615G>C synonymous_variant 1.0 linezolid rplC 801427 p.Met207Val missense_variant 1.0 linezolid rplC 801442 p.Ile212Val missense_variant 0.47 linezolid fbiC 1303441 c.511T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303449 c.519C>T synonymous_variant 1.0 pretomanid delamanid Not assoc w R - Interim clofazimine Not assoc w R - Interim fbiC 1303462 p.Ala178Ser missense_variant 1.0 pretomanid delamanid clofazimine fbiC 1303470 c.540T>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303480 p.Gln184Glu missense_variant 1.0 pretomanid delamanid clofazimine fbiC 1303488 c.558G>C synonymous_variant 0.92 pretomanid delamanid clofazimine fbiC 1303506 c.576C>T synonymous_variant 0.92 pretomanid delamanid clofazimine fbiC 1303512 c.582T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303534 p.Ser202Ala missense_variant 1.0 pretomanid delamanid clofazimine fbiC 1303538 p.Arg203Leu missense_variant 0.93 pretomanid delamanid clofazimine fbiC 1303545 c.615A>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303575 c.645G>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303578 c.648G>A synonymous_variant 0.82 pretomanid delamanid clofazimine fbiC 1303584 c.654C>G synonymous_variant 0.86 pretomanid delamanid clofazimine fbiC 1303596 c.666G>C synonymous_variant 0.88 pretomanid delamanid clofazimine fbiC 1303605 c.675C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303608 c.678G>A synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303614 c.684C>T synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303617 c.687C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303620 c.690C>T synonymous_variant 0.86 pretomanid delamanid Not assoc w R - Interim clofazimine Not assoc w R - Interim fbiC 1303629 c.699C>T synonymous_variant 0.88 pretomanid delamanid clofazimine fbiC 1303632 c.702T>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303659 c.729T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303661 p.Val244Ala missense_variant 1.0 pretomanid delamanid clofazimine fbiC 1303674 c.744C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303686 c.756C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303704 c.774T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303708 c.778T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303729 c.799_801delCTAinsTTG synonymous_variant 0.78 pretomanid delamanid clofazimine fbiC 1303732 p.Ser268Ala missense_variant 1.0 pretomanid delamanid clofazimine fbiC 1303737 c.807G>A synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303746 c.816T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303750 c.820_822delTTAinsCTG synonymous_variant 0.71 pretomanid delamanid clofazimine fbiC 1303755 c.825T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303779 c.849G>A synonymous_variant 0.62 pretomanid delamanid clofazimine fbiC 1303782 c.852C>T synonymous_variant 0.64 pretomanid delamanid clofazimine fbiC 1303785 c.855G>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303788 c.858T>C synonymous_variant 0.7 pretomanid delamanid clofazimine fbiC 1303789 p.Ile287Val missense_variant 1.0 pretomanid delamanid clofazimine fbiC 1303800 c.870G>C synonymous_variant 0.67 pretomanid delamanid clofazimine fbiC 1303812 c.882C>T synonymous_variant 0.71 pretomanid delamanid clofazimine fbiC 1303818 c.888C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303825 p.Glu299Gln missense_variant 0.59 pretomanid delamanid clofazimine fbiC 1303836 c.906G>C synonymous_variant 0.5 pretomanid delamanid clofazimine fbiC 1303842 c.912C>G synonymous_variant 0.5 pretomanid delamanid clofazimine fbiC 1303846 p.Phe306Val missense_variant 1.0 pretomanid delamanid clofazimine fbiC 1303854 c.924T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303860 c.930A>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1303866 p.Glu312Asp missense_variant 1.0 pretomanid delamanid clofazimine fbiC 1303884 c.954T>G synonymous_variant 0.92 pretomanid delamanid clofazimine fbiC 1303905 c.975G>C synonymous_variant 0.92 pretomanid delamanid clofazimine fbiC 1303914 c.984C>G synonymous_variant 0.9 pretomanid delamanid clofazimine fbiC 1303920 c.990C>T synonymous_variant 0.9 pretomanid delamanid clofazimine fbiC 1304001 c.1071C>T synonymous_variant 0.8 pretomanid delamanid clofazimine fbiC 1304019 c.1089C>T synonymous_variant 0.88 pretomanid delamanid clofazimine fbiC 1304022 c.1092T>C synonymous_variant 0.94 pretomanid delamanid clofazimine fbiC 1304046 c.1116C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304055 c.1125C>T synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304061 c.1131G>C synonymous_variant 0.88 pretomanid delamanid clofazimine fbiC 1304063 p.Ala378Asp missense_variant 0.88 pretomanid delamanid clofazimine fbiC 1304068 p.Val380Ile missense_variant 0.88 pretomanid delamanid clofazimine fbiC 1304085 c.1155C>A synonymous_variant 0.9 pretomanid delamanid clofazimine fbiC 1304087 p.Tyr386Phe missense_variant 0.75 pretomanid delamanid clofazimine fbiC 1304092 p.Met388Leu missense_variant 0.91 pretomanid delamanid clofazimine fbiC 1304104 c.1174C>T synonymous_variant 0.67 pretomanid delamanid Not assoc w R - Interim clofazimine Not assoc w R - Interim fbiC 1304161 p.Arg411Ser missense_variant 0.53 pretomanid delamanid clofazimine fbiC 1304169 c.1239T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304174 p.Val415Ala missense_variant 0.53 pretomanid delamanid clofazimine fbiC 1304178 c.1248G>A synonymous_variant 0.47 pretomanid delamanid clofazimine fbiC 1304184 c.1254G>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304187 c.1257T>C synonymous_variant 0.47 pretomanid delamanid clofazimine fbiC 1304190 c.1260G>C synonymous_variant 0.56 pretomanid delamanid clofazimine fbiC 1304196 c.1266C>A synonymous_variant 0.59 pretomanid delamanid clofazimine fbiC 1304205 c.1275C>A synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304220 c.1290G>C synonymous_variant 0.62 pretomanid delamanid clofazimine fbiC 1304222 p.Val431Ala missense_variant 0.62 pretomanid delamanid clofazimine fbiC 1304226 c.1296C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304227 p.Met433Leu missense_variant 1.0 pretomanid delamanid clofazimine fbiC 1304496 c.1566T>A synonymous_variant 0.92 pretomanid delamanid clofazimine fbiC 1304499 c.1569T>G synonymous_variant 1.0 pretomanid delamanid clofazimine Not assoc w R - Interim fbiC 1304502 c.1572G>C synonymous_variant 0.88 pretomanid delamanid clofazimine fbiC 1304526 c.1596T>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304532 c.1602G>C synonymous_variant 0.8 pretomanid delamanid clofazimine fbiC 1304533 c.1603T>C synonymous_variant 0.8 pretomanid delamanid clofazimine fbiC 1304541 c.1611C>G synonymous_variant 0.8 pretomanid delamanid clofazimine fbiC 1304544 c.1614T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304546 p.Val539Ala missense_variant 1.0 pretomanid delamanid clofazimine fbiC 1304559 p.Glu543Asp missense_variant 1.0 pretomanid delamanid clofazimine fbiC 1304565 c.1635C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304568 c.1638T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304574 c.1644C>G synonymous_variant 0.74 pretomanid delamanid clofazimine fbiC 1304580 c.1650T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304610 c.1680C>G synonymous_variant 0.64 pretomanid delamanid clofazimine fbiC 1304613 c.1683T>A synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304625 c.1695C>T synonymous_variant 0.67 pretomanid delamanid clofazimine fbiC 1304634 c.1704C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304640 c.1710A>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304646 c.1716T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304658 c.1728C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304661 c.1731C>T synonymous_variant 0.5 pretomanid delamanid clofazimine fbiC 1304691 c.1761G>C synonymous_variant 0.53 pretomanid delamanid clofazimine fbiC 1304694 c.1764A>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304711 p.Ala594Glu missense_variant 0.62 pretomanid delamanid clofazimine fbiC 1304715 c.1785G>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304724 c.1794A>G synonymous_variant 1.0 pretomanid delamanid Not assoc w R - Interim clofazimine Not assoc w R - Interim fbiC 1304727 c.1797A>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304742 c.1812T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304748 c.1818T>C synonymous_variant 0.38 pretomanid delamanid clofazimine fbiC 1304755 c.1825_1827delCTAinsTTG synonymous_variant 0.38 pretomanid delamanid clofazimine fbiC 1304760 c.1830G>C synonymous_variant 0.4 pretomanid delamanid clofazimine fbiC 1304778 c.1848T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304784 c.1854T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304787 c.1857T>G synonymous_variant 0.95 pretomanid delamanid clofazimine fbiC 1304797 p.Ala623Asn missense_variant 0.49 pretomanid delamanid clofazimine fbiC 1304808 c.1878C>G synonymous_variant 0.47 pretomanid delamanid clofazimine fbiC 1304811 c.1881C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304817 c.1887T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304823 c.1893C>T synonymous_variant 0.56 pretomanid delamanid clofazimine fbiC 1304826 c.1896G>A synonymous_variant 0.4 pretomanid delamanid clofazimine fbiC 1304829 c.1899T>C synonymous_variant 0.41 pretomanid delamanid clofazimine fbiC 1304832 c.1902C>G synonymous_variant 0.59 pretomanid delamanid Not assoc w R - Interim clofazimine Not assoc w R - Interim fbiC 1304832 c.1902C>T synonymous_variant 0.41 pretomanid delamanid Not assoc w R - Interim clofazimine Not assoc w R - Interim fbiC 1304853 c.1923C>G synonymous_variant 0.61 pretomanid delamanid Not assoc w R - Interim clofazimine Not assoc w R - Interim fbiC 1304856 c.1926C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304868 c.1938G>C synonymous_variant 0.56 pretomanid delamanid clofazimine fbiC 1304869 p.Leu647Phe missense_variant 0.48 pretomanid delamanid clofazimine fbiC 1304872 c.1942_1943delAGinsTC synonymous_variant 0.51 pretomanid delamanid clofazimine fbiC 1304875 p.Ile649Val missense_variant 1.0 pretomanid delamanid clofazimine fbiC 1304883 c.1953G>A synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304891 p.Ile654Thr missense_variant 0.33 pretomanid delamanid clofazimine fbiC 1304893 p.Gly655Ser missense_variant 1.0 pretomanid delamanid clofazimine fbiC 1304915 p.Asp662Gly missense_variant 0.71 pretomanid delamanid clofazimine fbiC 1304928 c.1998T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304934 c.2004C>G synonymous_variant 0.72 pretomanid delamanid clofazimine fbiC 1304937 c.2007G>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304946 c.2016G>C synonymous_variant 0.71 pretomanid delamanid clofazimine fbiC 1304955 c.2025G>A synonymous_variant 0.69 pretomanid delamanid clofazimine fbiC 1304958 c.2028T>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304982 c.2052G>A synonymous_variant 0.72 pretomanid delamanid clofazimine fbiC 1304991 c.2061G>C synonymous_variant 0.72 pretomanid delamanid clofazimine fbiC 1304994 c.2064A>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1304995 p.Leu689Met missense_variant 1.0 pretomanid delamanid clofazimine fbiC 1305006 c.2076A>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1305012 c.2082G>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1305015 c.2085G>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1305021 c.2091C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1305030 c.2100G>C synonymous_variant 0.37 pretomanid delamanid clofazimine fbiC 1305033 c.2103T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1305039 c.2109G>A synonymous_variant 0.6 pretomanid delamanid clofazimine fbiC 1305042 c.2112A>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1305045 c.2115A>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1305331 p.Glu801Asn missense_variant 1.0 pretomanid delamanid clofazimine fbiC 1305336 c.2406T>C synonymous_variant 0.6 pretomanid delamanid clofazimine fbiC 1305354 c.2424C>T synonymous_variant 0.52 pretomanid delamanid Not assoc w R - Interim clofazimine Not assoc w R - Interim fbiC 1305357 c.2427C>G synonymous_variant 0.59 pretomanid delamanid Not assoc w R - Interim clofazimine Not assoc w R - Interim fbiC 1305361 c.2431C>T synonymous_variant 0.61 pretomanid delamanid clofazimine fbiC 1305393 c.2463T>C synonymous_variant 0.71 pretomanid delamanid clofazimine fbiC 1305399 c.2469A>G synonymous_variant 0.71 pretomanid delamanid clofazimine fbiC 1305405 c.2475A>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1305414 c.2484G>A synonymous_variant 0.68 pretomanid delamanid clofazimine fbiC 1305417 c.2487C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1305423 c.2493T>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiC 1305426 c.2496G>A synonymous_variant 0.79 pretomanid delamanid clofazimine fbiC 1305427 c.2497C>T synonymous_variant 0.79 pretomanid delamanid clofazimine fbiC 1305435 c.2505G>C synonymous_variant 0.83 pretomanid delamanid clofazimine fbiC 1305444 c.2514A>G synonymous_variant 0.94 pretomanid delamanid clofazimine fbiC 1305446 p.Gly839Ala missense_variant 0.85 pretomanid delamanid Uncertain significance clofazimine Uncertain significance sigE 1364634 c.222C>G synonymous_variant 1.0 pyrazinamide sigE 1364640 c.228G>C synonymous_variant 1.0 pyrazinamide sigE 1364691 c.279T>C synonymous_variant 1.0 pyrazinamide sigE 1364703 c.291G>C synonymous_variant 1.0 pyrazinamide sigE 1364712 c.300T>C synonymous_variant 1.0 pyrazinamide sigE 1364721 c.309C>G synonymous_variant 0.95 pyrazinamide sigE 1364726 p.Asn105Ser missense_variant 0.95 pyrazinamide sigE 1364733 p.His107Gln missense_variant 0.95 pyrazinamide sigE 1364736 c.324T>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim sigE 1364742 c.330A>G synonymous_variant 1.0 pyrazinamide sigE 1364745 c.333C>T synonymous_variant 0.95 pyrazinamide sigE 1364746 c.334C>T synonymous_variant 0.95 pyrazinamide Not assoc w R - Interim sigE 1364751 c.339C>G synonymous_variant 1.0 pyrazinamide sigE 1364760 c.348C>G synonymous_variant 0.97 pyrazinamide sigE 1364763 c.351T>C synonymous_variant 1.0 pyrazinamide sigE 1364767 c.355A>C synonymous_variant 1.0 pyrazinamide sigE 1364790 c.378T>C synonymous_variant 1.0 pyrazinamide sigE 1364799 c.387G>C synonymous_variant 0.93 pyrazinamide sigE 1364802 c.390C>A synonymous_variant 1.0 pyrazinamide sigE 1364811 c.399A>G synonymous_variant 0.89 pyrazinamide sigE 1364820 c.408A>G synonymous_variant 1.0 pyrazinamide sigE 1364839 c.427T>C synonymous_variant 1.0 pyrazinamide sigE 1364847 c.435G>C synonymous_variant 1.0 pyrazinamide sigE 1364856 c.444C>G synonymous_variant 1.0 pyrazinamide sigE 1364868 c.456T>C synonymous_variant 1.0 pyrazinamide sigE 1364871 c.459C>G synonymous_variant 0.93 pyrazinamide sigE 1364883 c.471G>A synonymous_variant 0.93 pyrazinamide sigE 1364889 c.477A>G synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim sigE 1364892 c.480C>G synonymous_variant 0.96 pyrazinamide sigE 1364913 c.501C>G synonymous_variant 1.0 pyrazinamide sigE 1364919 c.507T>C synonymous_variant 1.0 pyrazinamide sigE 1364925 c.513C>G synonymous_variant 1.0 pyrazinamide sigE 1364928 c.516C>T synonymous_variant 1.0 pyrazinamide sigE 1364952 c.540A>C synonymous_variant 1.0 pyrazinamide sigE 1364958 c.546G>C synonymous_variant 1.0 pyrazinamide sigE 1364961 c.549A>G synonymous_variant 1.0 pyrazinamide sigE 1364964 c.552T>G synonymous_variant 1.0 pyrazinamide sigE 1364967 c.555C>T synonymous_variant 1.0 pyrazinamide sigE 1364973 c.561G>A synonymous_variant 1.0 pyrazinamide sigE 1364976 c.564T>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim sigE 1364984 p.Ala191Asp missense_variant 1.0 pyrazinamide sigE 1364988 c.576G>A synonymous_variant 0.96 pyrazinamide Not assoc w R - Interim sigE 1365003 c.591T>C synonymous_variant 0.95 pyrazinamide sigE 1365006 c.594T>C synonymous_variant 1.0 pyrazinamide sigE 1365019 c.607C>T synonymous_variant 0.85 pyrazinamide sigE 1365024 c.612T>C synonymous_variant 1.0 pyrazinamide embR 1416285 p.Glu355Gln missense_variant 1.0 ethambutol embR 1416289 c.1059G>A synonymous_variant 1.0 ethambutol embR 1416301 c.1047C>A synonymous_variant 1.0 ethambutol embR 1416310 c.1038G>C synonymous_variant 1.0 ethambutol embR 1416313 c.1035A>G synonymous_variant 1.0 ethambutol embR 1416316 c.1032C>G synonymous_variant 1.0 ethambutol embR 1416330 p.Val340Ile missense_variant 1.0 ethambutol embR 1416332 p.Tyr339Phe missense_variant 1.0 ethambutol embR 1416335 p.Asn338Ser missense_variant 1.0 ethambutol embR 1416343 c.1005G>C synonymous_variant 1.0 ethambutol embR 1416364 c.984C>T synonymous_variant 1.0 ethambutol embR 1416386 p.Asp321Ala missense_variant 1.0 ethambutol embR 1416388 c.960A>G synonymous_variant 1.0 ethambutol embR 1416393 p.Val319Ile missense_variant 1.0 ethambutol Uncertain significance atpE 1460807 c.-238C>T upstream_gene_variant 0.82 bedaquiline atpE 1460816 c.-229T>C upstream_gene_variant 1.0 bedaquiline atpE 1460828 c.-217C>T upstream_gene_variant 0.77 bedaquiline atpE 1460831 c.-214T>C upstream_gene_variant 1.0 bedaquiline atpE 1460840 c.-205A>G upstream_gene_variant 1.0 bedaquiline atpE 1460855 c.-190T>C upstream_gene_variant 0.98 bedaquiline atpE 1460858 c.-187C>G upstream_gene_variant 1.0 bedaquiline atpE 1460882 c.-163T>C upstream_gene_variant 1.0 bedaquiline atpE 1460894 c.-151A>G upstream_gene_variant 1.0 bedaquiline atpE 1460895 c.-150_-148delGCAinsTCC upstream_gene_variant 0.75 bedaquiline atpE 1460900 c.-145T>C upstream_gene_variant 1.0 bedaquiline atpE 1460904 c.-141C>T upstream_gene_variant 0.75 bedaquiline atpE 1460918 c.-127A>G upstream_gene_variant 1.0 bedaquiline atpE 1461170 c.126A>G synonymous_variant 1.0 bedaquiline atpE 1461185 c.141G>T synonymous_variant 1.0 bedaquiline atpE 1461194 c.150C>T synonymous_variant 0.9 bedaquiline atpE 1461197 c.153A>G synonymous_variant 1.0 bedaquiline rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.97 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin Uncertain significance amikacin Uncertain significance rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.97 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin amikacin Uncertain significance rrs 1471932 n.87A>G non_coding_transcript_exon_variant 0.98 kanamycin capreomycin streptomycin amikacin rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.98 kanamycin capreomycin Uncertain significance streptomycin Uncertain significance amikacin Uncertain significance rrs 1471970 n.125G>A non_coding_transcript_exon_variant 1.0 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin Uncertain significance amikacin Uncertain significance rrs 1472030 n.185G>T non_coding_transcript_exon_variant 1.0 kanamycin capreomycin streptomycin amikacin rrs 1472031 n.186G>T non_coding_transcript_exon_variant 1.0 kanamycin capreomycin streptomycin amikacin rrs 1472033 n.188A>G non_coding_transcript_exon_variant 1.0 kanamycin capreomycin streptomycin amikacin rrs 1472034 n.189T>C non_coding_transcript_exon_variant 1.0 kanamycin capreomycin streptomycin amikacin rrs 1472040 n.195T>C non_coding_transcript_exon_variant 0.88 kanamycin capreomycin streptomycin amikacin rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 1.0 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin amikacin Uncertain significance rrs 1472061 n.216A>T non_coding_transcript_exon_variant 1.0 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin amikacin Uncertain significance rrs 1472075 n.230A>G non_coding_transcript_exon_variant 1.0 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin amikacin Uncertain significance rrs 1472445 n.601_604delTCTC non_coding_transcript_exon_variant 0.73 kanamycin capreomycin streptomycin amikacin rrs 1472451 n.606_607insCGGG non_coding_transcript_exon_variant 0.73 kanamycin capreomycin streptomycin amikacin rrs 1472460 n.615T>C non_coding_transcript_exon_variant 0.7 kanamycin capreomycin streptomycin amikacin rrs 1472461 n.616G>C non_coding_transcript_exon_variant 0.7 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin Uncertain significance amikacin Uncertain significance rrs 1472463 n.618G>C non_coding_transcript_exon_variant 0.7 kanamycin capreomycin streptomycin amikacin rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.68 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin Uncertain significance amikacin Uncertain significance rrs 1472489 n.644A>G non_coding_transcript_exon_variant 0.76 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin Uncertain significance amikacin Uncertain significance rrs 1472686 n.841G>A non_coding_transcript_exon_variant 0.74 kanamycin capreomycin streptomycin amikacin rrs 1472847 n.1002G>C non_coding_transcript_exon_variant 0.54 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin amikacin Uncertain significance rrs 1472848 n.1003T>G non_coding_transcript_exon_variant 0.54 kanamycin capreomycin streptomycin amikacin rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 0.57 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin amikacin Uncertain significance rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 0.57 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin Uncertain significance amikacin Uncertain significance rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 0.54 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin Uncertain significance amikacin Uncertain significance rrs 1472858 n.1013G>T non_coding_transcript_exon_variant 0.54 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin Uncertain significance amikacin Uncertain significance rrs 1472859 n.1014G>C non_coding_transcript_exon_variant 0.54 kanamycin capreomycin streptomycin amikacin rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.54 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin amikacin Uncertain significance rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 1.0 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin Uncertain significance amikacin Uncertain significance rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 1.0 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin amikacin Uncertain significance rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 1.0 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin amikacin Uncertain significance rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 1.0 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin Uncertain significance amikacin Uncertain significance rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 1.0 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin amikacin Uncertain significance rrs 1473123 n.1278delAinsTT non_coding_transcript_exon_variant 1.0 kanamycin capreomycin streptomycin amikacin rrs 1473288 n.1443C>T non_coding_transcript_exon_variant 0.82 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin amikacin Uncertain significance rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 1.0 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin amikacin Uncertain significance rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 0.82 kanamycin Uncertain significance capreomycin Uncertain significance streptomycin amikacin Uncertain significance rrl 1473417 n.-241C>T upstream_gene_variant 1.0 capreomycin linezolid rrl 1473420 n.-238A>G upstream_gene_variant 1.0 capreomycin linezolid rrl 1473421 n.-237G>A upstream_gene_variant 1.0 capreomycin linezolid rrl 1473437 n.-221T>C upstream_gene_variant 1.0 capreomycin linezolid rrl 1473668 n.11C>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid rrl 1473676 n.19G>A non_coding_transcript_exon_variant 0.79 capreomycin Uncertain significance linezolid Uncertain significance rrl 1473758 n.101G>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid rrl 1473797 n.140G>T non_coding_transcript_exon_variant 0.78 capreomycin linezolid rrl 1473806 n.149C>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid Uncertain significance rrl 1473813 n.156C>T non_coding_transcript_exon_variant 0.76 capreomycin linezolid rrl 1473831 n.174G>A non_coding_transcript_exon_variant 0.78 capreomycin Uncertain significance linezolid Uncertain significance rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.76 capreomycin Uncertain significance linezolid Uncertain significance rrl 1473887 n.230T>A non_coding_transcript_exon_variant 0.74 capreomycin linezolid rrl 1473888 n.231T>A non_coding_transcript_exon_variant 0.74 capreomycin Uncertain significance linezolid Uncertain significance rrl 1473899 n.242A>T non_coding_transcript_exon_variant 0.73 capreomycin linezolid rrl 1473918 n.261C>T non_coding_transcript_exon_variant 0.69 capreomycin linezolid rrl 1473924 n.267_268insT non_coding_transcript_exon_variant 0.62 capreomycin linezolid rrl 1473943 n.286G>C non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1473945 n.288T>A non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid rrl 1473946 n.289A>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid rrl 1473981 n.324delGinsAT non_coding_transcript_exon_variant 0.75 capreomycin linezolid rrl 1473986 n.329T>C non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1473994 n.337C>T non_coding_transcript_exon_variant 0.77 capreomycin linezolid rrl 1473995 n.338G>T non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1474001 n.344C>T non_coding_transcript_exon_variant 1.0 capreomycin Not assoc w R linezolid Not assoc w R rrl 1474009 n.352A>G non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1474011 n.354G>A non_coding_transcript_exon_variant 0.85 capreomycin Uncertain significance linezolid Uncertain significance rrl 1474018 n.361G>A non_coding_transcript_exon_variant 0.86 capreomycin linezolid rrl 1474030 n.373G>A non_coding_transcript_exon_variant 0.85 capreomycin linezolid rrl 1474061 n.404T>C non_coding_transcript_exon_variant 0.81 capreomycin linezolid rrl 1474089 n.432C>T non_coding_transcript_exon_variant 0.79 capreomycin Uncertain significance linezolid rrl 1474093 n.436G>A non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid rrl 1474100 n.443C>T non_coding_transcript_exon_variant 0.73 capreomycin linezolid rrl 1474103 n.446A>T non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1474110 n.453A>C non_coding_transcript_exon_variant 0.71 capreomycin linezolid rrl 1474111 n.454T>C non_coding_transcript_exon_variant 0.71 capreomycin linezolid rrl 1474130 n.473C>T non_coding_transcript_exon_variant 0.77 capreomycin Uncertain significance linezolid rrl 1474140 n.483C>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid Uncertain significance rrl 1474151 n.494C>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid Uncertain significance rrl 1474181 n.524C>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid Uncertain significance rrl 1474291 n.635_649delTTCCTCTCCGGAGGA non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1474308 n.651G>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid Uncertain significance rrl 1474310 n.653T>G non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1474409 n.756_774delACCCACACGCGCATACGCG non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1474433 n.776G>T non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1474435 n.779_783delTGAAT non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1474447 n.790G>A non_coding_transcript_exon_variant 0.95 capreomycin linezolid rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.75 capreomycin Uncertain significance linezolid Uncertain significance rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.75 capreomycin Uncertain significance linezolid Uncertain significance rrl 1474639 n.982G>A non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid Uncertain significance rrl 1474717 n.1060A>T non_coding_transcript_exon_variant 0.73 capreomycin Uncertain significance linezolid Uncertain significance rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.72 capreomycin Uncertain significance linezolid rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.72 capreomycin Uncertain significance linezolid Uncertain significance rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.74 capreomycin linezolid rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid Uncertain significance rrl 1474800 n.1143T>C non_coding_transcript_exon_variant 0.76 capreomycin linezolid rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid Uncertain significance rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid rrl 1475013 n.1356G>A non_coding_transcript_exon_variant 0.79 capreomycin linezolid rrl 1475018 n.1361G>A non_coding_transcript_exon_variant 0.8 capreomycin linezolid rrl 1475027 n.1370G>T non_coding_transcript_exon_variant 0.8 capreomycin linezolid rrl 1475028 n.1371G>T non_coding_transcript_exon_variant 0.8 capreomycin linezolid rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid rrl 1475313 n.1656G>A non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid Uncertain significance rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid Uncertain significance rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1475401 n.1745delC non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1475404 n.1747A>G non_coding_transcript_exon_variant 0.76 capreomycin linezolid rrl 1475405 n.1748A>T non_coding_transcript_exon_variant 0.76 capreomycin linezolid rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.76 capreomycin Uncertain significance linezolid Uncertain significance rrl 1475453 n.1796T>A non_coding_transcript_exon_variant 0.75 capreomycin linezolid rrl 1475480 n.1823A>G non_coding_transcript_exon_variant 0.83 capreomycin linezolid rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid Uncertain significance rrl 1475487 n.1830C>T non_coding_transcript_exon_variant 0.85 capreomycin Uncertain significance linezolid rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid Uncertain significance rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 1.0 capreomycin linezolid Uncertain significance rrl 1475604 n.1947A>C non_coding_transcript_exon_variant 0.7 capreomycin Uncertain significance linezolid rrl 1475605 n.1948A>T non_coding_transcript_exon_variant 0.69 capreomycin linezolid rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid rrl 1475617 n.1960C>G non_coding_transcript_exon_variant 0.72 capreomycin linezolid rrl 1475625 n.1968G>C non_coding_transcript_exon_variant 0.72 capreomycin linezolid rrl 1475637 n.1980T>A non_coding_transcript_exon_variant 0.69 capreomycin linezolid rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid Uncertain significance rrl 1475760 n.2103_2106delCCGCinsTCGT non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0 capreomycin Not assoc w R linezolid Uncertain significance rrl 1475999 n.2342G>T non_coding_transcript_exon_variant 0.83 capreomycin linezolid rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.72 capreomycin Uncertain significance linezolid rrl 1476032 n.2375C>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid rrl 1476033 n.2376T>C non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid rrl 1476045 n.2388G>C non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1476047 n.2390G>A non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid Uncertain significance rrl 1476077 n.2420T>C non_coding_transcript_exon_variant 0.72 capreomycin linezolid rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid Uncertain significance rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1476105 n.2448_2449delGAinsT non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid Uncertain significance rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.79 capreomycin Uncertain significance linezolid Uncertain significance rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.79 capreomycin Uncertain significance linezolid Uncertain significance rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.78 capreomycin Uncertain significance linezolid Uncertain significance rrl 1476580 n.2923G>A non_coding_transcript_exon_variant 0.8 capreomycin linezolid rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.77 capreomycin Not assoc w R linezolid Uncertain significance rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid Uncertain significance rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1476716 n.3059A>C non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance linezolid rrl 1476723 n.3066T>A non_coding_transcript_exon_variant 0.71 capreomycin linezolid rrl 1476725 n.3068C>T non_coding_transcript_exon_variant 0.71 capreomycin Uncertain significance linezolid Uncertain significance rrl 1476726 n.3069A>G non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1476732 n.3075T>C non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1476750 n.3093T>C non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1476755 n.3098G>A non_coding_transcript_exon_variant 1.0 capreomycin linezolid rrl 1476759 n.3102T>C non_coding_transcript_exon_variant 1.0 capreomycin linezolid inhA 1673499 c.-703T>C upstream_gene_variant 0.73 isoniazid Uncertain significance ethionamide inhA 1673505 c.-697A>T upstream_gene_variant 0.73 isoniazid ethionamide inhA 1673517 c.-685G>C upstream_gene_variant 0.73 isoniazid ethionamide inhA 1673524 c.-678C>T upstream_gene_variant 0.73 isoniazid ethionamide inhA 1673535 c.-667A>G upstream_gene_variant 1.0 isoniazid ethionamide inhA 1673547 c.-655T>C upstream_gene_variant 1.0 isoniazid ethionamide inhA 1673565 c.-637G>C upstream_gene_variant 0.82 isoniazid ethionamide inhA 1673633 c.-569G>A upstream_gene_variant 1.0 isoniazid ethionamide inhA 1673637 c.-565C>G upstream_gene_variant 0.64 isoniazid ethionamide inhA 1673641 c.-561G>A upstream_gene_variant 0.69 isoniazid ethionamide inhA 1673646 c.-556T>C upstream_gene_variant 1.0 isoniazid ethionamide inhA 1673657 c.-545C>A upstream_gene_variant 1.0 isoniazid ethionamide inhA 1673660 c.-542C>A upstream_gene_variant 1.0 isoniazid ethionamide inhA 1673664 c.-538A>C upstream_gene_variant 1.0 isoniazid ethionamide inhA 1673667 c.-535A>G upstream_gene_variant 1.0 isoniazid ethionamide inhA 1673679 c.-523T>C upstream_gene_variant 1.0 isoniazid Uncertain significance ethionamide Uncertain significance inhA 1673685 c.-517C>T upstream_gene_variant 0.89 isoniazid ethionamide inhA 1673710 c.-492C>A upstream_gene_variant 1.0 isoniazid ethionamide inhA 1673716 c.-486_-485delGCinsAA upstream_gene_variant 1.0 isoniazid ethionamide inhA 1673733 c.-469G>C upstream_gene_variant 1.0 isoniazid ethionamide inhA 1673748 c.-454A>G upstream_gene_variant 1.0 isoniazid ethionamide inhA 1673749 c.-453_-452delAAinsCG upstream_gene_variant 1.0 isoniazid ethionamide inhA 1673758 c.-444A>G upstream_gene_variant 1.0 isoniazid ethionamide inhA 1673905 c.-297T>G upstream_gene_variant 1.0 isoniazid ethionamide inhA 1673916 c.-286A>C upstream_gene_variant 1.0 isoniazid ethionamide inhA 1673917 c.-285G>C upstream_gene_variant 1.0 isoniazid ethionamide inhA 1673922 c.-280T>C upstream_gene_variant 1.0 isoniazid ethionamide inhA 1673941 c.-261G>T upstream_gene_variant 1.0 isoniazid ethionamide inhA 1673955 c.-247G>C upstream_gene_variant 1.0 isoniazid ethionamide inhA 1674342 c.141T>C synonymous_variant 0.9 isoniazid ethionamide inhA 1674352 p.Thr51Ala missense_variant 1.0 isoniazid ethionamide Uncertain significance inhA 1674357 c.156C>T synonymous_variant 0.91 isoniazid Not assoc w R - Interim ethionamide inhA 1674367 p.Ala56Gln missense_variant 0.9 isoniazid ethionamide inhA 1674382 p.Leu61Ile missense_variant 1.0 isoniazid ethionamide inhA 1674471 c.270G>C synonymous_variant 1.0 isoniazid ethionamide inhA 1674480 c.279T>C synonymous_variant 1.0 isoniazid ethionamide inhA 1674489 c.288G>T synonymous_variant 0.62 isoniazid ethionamide inhA 1674507 c.306G>A synonymous_variant 1.0 isoniazid ethionamide inhA 1674534 c.333G>C synonymous_variant 0.67 isoniazid Not assoc w R - Interim ethionamide inhA 1674537 c.336C>A synonymous_variant 1.0 isoniazid ethionamide inhA 1674540 c.339C>T synonymous_variant 0.67 isoniazid ethionamide inhA 1674542 p.Ala114Glu missense_variant 1.0 isoniazid ethionamide inhA 1674549 c.348G>C synonymous_variant 1.0 isoniazid ethionamide inhA 1674555 c.354G>A synonymous_variant 1.0 isoniazid Not assoc w R - Interim ethionamide Not assoc w R - Interim inhA 1674561 c.360C>T synonymous_variant 1.0 isoniazid ethionamide inhA 1674585 c.384T>C synonymous_variant 1.0 isoniazid ethionamide inhA 1674588 c.387G>A synonymous_variant 0.77 isoniazid ethionamide inhA 1674589 p.Met130Leu missense_variant 1.0 isoniazid ethionamide inhA 1674601 p.Leu134Val missense_variant 1.0 isoniazid ethionamide inhA 1674618 c.417C>T synonymous_variant 0.78 isoniazid ethionamide inhA 1674619 p.Pro140Ser missense_variant 0.8 isoniazid ethionamide inhA 1674624 c.423A>T synonymous_variant 1.0 isoniazid ethionamide inhA 1674627 c.426T>C synonymous_variant 0.83 isoniazid ethionamide inhA 1674655 c.454_456delAGCinsTCG synonymous_variant 0.74 isoniazid ethionamide inhA 1674669 c.468G>C synonymous_variant 0.78 isoniazid ethionamide inhA 1674690 c.489C>G synonymous_variant 0.76 isoniazid ethionamide inhA 1674696 c.495G>A synonymous_variant 0.75 isoniazid ethionamide inhA 1674703 c.502T>C synonymous_variant 1.0 isoniazid ethionamide inhA 1674718 c.517A>C synonymous_variant 1.0 isoniazid ethionamide inhA 1674729 c.528G>A synonymous_variant 0.84 isoniazid ethionamide inhA 1674745 p.Tyr182Ala missense_variant 1.0 isoniazid ethionamide inhA 1674756 c.555T>C synonymous_variant 1.0 isoniazid Not assoc w R - Interim ethionamide Not assoc w R - Interim inhA 1674759 c.558G>C synonymous_variant 1.0 isoniazid ethionamide inhA 1674765 c.564C>T synonymous_variant 1.0 isoniazid ethionamide inhA 1674774 c.573A>C synonymous_variant 1.0 isoniazid ethionamide inhA 1674777 c.576C>A synonymous_variant 1.0 isoniazid ethionamide inhA 1674780 c.579T>G synonymous_variant 1.0 isoniazid ethionamide inhA 1674801 c.600T>C synonymous_variant 1.0 isoniazid ethionamide inhA 1674820 c.619_621delCTCinsTTG synonymous_variant 0.89 isoniazid ethionamide inhA 1674828 c.627G>A synonymous_variant 1.0 isoniazid ethionamide inhA 1674846 p.Ile215Met missense_variant 1.0 isoniazid ethionamide inhA 1674870 c.669T>C synonymous_variant 1.0 isoniazid ethionamide inhA 1674876 c.675C>G synonymous_variant 0.73 isoniazid ethionamide inhA 1674879 c.678T>C synonymous_variant 1.0 isoniazid ethionamide inhA 1674888 c.687C>T synonymous_variant 1.0 isoniazid ethionamide inhA 1674904 p.Ala235Pro missense_variant 1.0 isoniazid ethionamide inhA 1674909 c.708G>C synonymous_variant 1.0 isoniazid ethionamide inhA 1674915 c.714C>G synonymous_variant 0.66 isoniazid ethionamide inhA 1674939 c.738G>A synonymous_variant 1.0 isoniazid Not assoc w R - Interim ethionamide Not assoc w R - Interim inhA 1674942 c.741T>C synonymous_variant 1.0 isoniazid ethionamide inhA 1674954 c.753G>C synonymous_variant 0.44 isoniazid ethionamide inhA 1674966 c.765T>C synonymous_variant 1.0 isoniazid ethionamide inhA 1674967 p.Asp256Thr missense_variant 1.0 isoniazid ethionamide inhA 1674993 c.792G>C synonymous_variant 1.0 isoniazid ethionamide inhA 1674994 p.His265Ser missense_variant 1.0 isoniazid ethionamide inhA 1675006 c.805_807delCTCinsTTG synonymous_variant 1.0 isoniazid ethionamide rpsA 1833256 c.-286C>G upstream_gene_variant 1.0 pyrazinamide rpsA 1833262 c.-280T>C upstream_gene_variant 1.0 pyrazinamide rpsA 1833273 c.-269G>A upstream_gene_variant 1.0 pyrazinamide rpsA 1833277 c.-265C>G upstream_gene_variant 1.0 pyrazinamide rpsA 1833283 c.-259C>G upstream_gene_variant 1.0 pyrazinamide rpsA 1833288 c.-254_-253delTGinsCC upstream_gene_variant 1.0 pyrazinamide rpsA 1833304 c.-238C>G upstream_gene_variant 1.0 pyrazinamide rpsA 1833310 c.-232T>C upstream_gene_variant 1.0 pyrazinamide rpsA 1833319 c.-223C>G upstream_gene_variant 1.0 pyrazinamide rpsA 1833340 c.-202G>C upstream_gene_variant 1.0 pyrazinamide rpsA 1833343 c.-199G>C upstream_gene_variant 1.0 pyrazinamide rpsA 1833352 c.-190C>G upstream_gene_variant 1.0 pyrazinamide rpsA 1833532 c.-10A>C upstream_gene_variant 1.0 pyrazinamide rpsA 1833568 c.27G>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim rpsA 1833589 c.48A>T synonymous_variant 1.0 pyrazinamide rpsA 1833595 c.54T>C synonymous_variant 1.0 pyrazinamide rpsA 1833613 c.72C>A synonymous_variant 0.81 pyrazinamide rpsA 1833619 c.78A>C synonymous_variant 0.81 pyrazinamide rpsA 1833661 c.120A>G synonymous_variant 1.0 pyrazinamide rpsA 1833667 c.126C>G synonymous_variant 1.0 pyrazinamide rpsA 1833703 c.162C>T synonymous_variant 0.83 pyrazinamide Not assoc w R - Interim rpsA 1833724 c.183C>G synonymous_variant 1.0 pyrazinamide rpsA 1833727 c.186G>C synonymous_variant 1.0 pyrazinamide rpsA 1833745 c.204G>C synonymous_variant 1.0 pyrazinamide rpsA 1833760 c.219C>T synonymous_variant 0.79 pyrazinamide Not assoc w R - Interim rpsA 1833790 c.249T>C synonymous_variant 1.0 pyrazinamide rpsA 1833793 c.252C>T synonymous_variant 0.78 pyrazinamide rpsA 1833802 c.261A>G synonymous_variant 1.0 pyrazinamide rpsA 1833808 c.267G>C synonymous_variant 0.77 pyrazinamide rpsA 1833811 c.270G>T synonymous_variant 1.0 pyrazinamide rpsA 1833832 c.291G>A synonymous_variant 0.74 pyrazinamide rpsA 1833838 c.297G>C synonymous_variant 1.0 pyrazinamide rpsA 1833841 c.300C>G synonymous_variant 1.0 pyrazinamide rpsA 1833847 c.306C>G synonymous_variant 1.0 pyrazinamide rpsA 1833856 c.315A>G synonymous_variant 1.0 pyrazinamide rpsA 1833859 c.318C>T synonymous_variant 0.69 pyrazinamide rpsA 1833874 c.333T>C synonymous_variant 1.0 pyrazinamide rpsA 1833895 c.354G>C synonymous_variant 0.72 pyrazinamide rpsA 1833928 c.387G>C synonymous_variant 1.0 pyrazinamide rpsA 1833949 c.408T>C synonymous_variant 0.73 pyrazinamide rpsA 1833970 c.429G>A synonymous_variant 0.75 pyrazinamide rpsA 1833979 c.438T>C synonymous_variant 1.0 pyrazinamide rpsA 1834000 c.459G>C synonymous_variant 1.0 pyrazinamide rpsA 1834015 c.474G>C synonymous_variant 0.78 pyrazinamide rpsA 1834021 c.480C>T synonymous_variant 1.0 pyrazinamide rpsA 1834102 c.561T>C synonymous_variant 1.0 pyrazinamide rpsA 1834105 c.564C>T synonymous_variant 1.0 pyrazinamide rpsA 1834150 c.609G>C synonymous_variant 1.0 pyrazinamide rpsA 1834153 c.612T>C synonymous_variant 1.0 pyrazinamide rpsA 1834154 p.Asn205Gln missense_variant 1.0 pyrazinamide rpsA 1834157 c.616T>C synonymous_variant 1.0 pyrazinamide rpsA 1834162 c.621A>G synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim rpsA 1834165 c.624A>G synonymous_variant 1.0 pyrazinamide rpsA 1834177 c.636A>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim rpsA 1834186 c.645C>G synonymous_variant 0.87 pyrazinamide rpsA 1834189 c.648G>C synonymous_variant 1.0 pyrazinamide rpsA 1834195 c.654G>C synonymous_variant 1.0 pyrazinamide rpsA 1834222 c.681T>C synonymous_variant 1.0 pyrazinamide rpsA 1834225 c.684C>G synonymous_variant 0.91 pyrazinamide rpsA 1834231 c.690T>G synonymous_variant 1.0 pyrazinamide rpsA 1834249 c.708T>C synonymous_variant 1.0 pyrazinamide rpsA 1834261 c.720A>G synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim rpsA 1834264 c.723G>C synonymous_variant 1.0 pyrazinamide rpsA 1834297 c.756C>T synonymous_variant 0.76 pyrazinamide rpsA 1834303 c.762T>G synonymous_variant 1.0 pyrazinamide rpsA 1834336 c.795C>G synonymous_variant 0.72 pyrazinamide rpsA 1834348 c.807T>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim rpsA 1834366 c.825A>G synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim rpsA 1834375 c.834G>A synonymous_variant 0.72 pyrazinamide rpsA 1834396 c.855G>T synonymous_variant 1.0 pyrazinamide rpsA 1834411 c.870T>C synonymous_variant 1.0 pyrazinamide rpsA 1834423 c.882G>T synonymous_variant 1.0 pyrazinamide rpsA 1834451 c.910T>C synonymous_variant 1.0 pyrazinamide rpsA 1834456 c.915T>G synonymous_variant 0.74 pyrazinamide rpsA 1834465 c.924T>C synonymous_variant 1.0 pyrazinamide rpsA 1834468 c.927A>G synonymous_variant 1.0 pyrazinamide rpsA 1834474 c.933C>T synonymous_variant 0.72 pyrazinamide rpsA 1834489 c.948T>C synonymous_variant 1.0 pyrazinamide rpsA 1834519 c.978G>C synonymous_variant 0.7 pyrazinamide rpsA 1834528 c.987T>C synonymous_variant 0.32 pyrazinamide rpsA 1834546 c.1005T>C synonymous_variant 1.0 pyrazinamide rpsA 1834555 c.1014T>G synonymous_variant 0.79 pyrazinamide rpsA 1834603 c.1062G>A synonymous_variant 0.82 pyrazinamide rpsA 1834609 c.1068T>C synonymous_variant 1.0 pyrazinamide rpsA 1834612 c.1071G>A synonymous_variant 0.78 pyrazinamide Not assoc w R - Interim rpsA 1834633 c.1092A>G synonymous_variant 0.99 pyrazinamide rpsA 1834639 c.1098T>C synonymous_variant 0.99 pyrazinamide rpsA 1834654 c.1113G>A synonymous_variant 0.98 pyrazinamide rpsA 1834690 c.1149T>C synonymous_variant 0.96 pyrazinamide rpsA 1834699 p.Glu386Asp missense_variant 0.69 pyrazinamide rpsA 1834732 c.1191T>C synonymous_variant 0.96 pyrazinamide rpsA 1834753 c.1212T>C synonymous_variant 0.91 pyrazinamide rpsA 1834765 p.Glu408Asp missense_variant 0.91 pyrazinamide rpsA 1834775 p.Ala412Thr missense_variant 1.0 pyrazinamide rpsA 1834780 c.1239A>G synonymous_variant 1.0 pyrazinamide rpsA 1834789 c.1248T>C synonymous_variant 1.0 pyrazinamide rpsA 1834792 c.1251G>C synonymous_variant 1.0 pyrazinamide tsnR 1853369 c.-237C>T upstream_gene_variant 0.73 linezolid tsnR 1853370 c.-236_-234delGCAinsTCG upstream_gene_variant 1.0 linezolid tsnR 1853375 c.-231G>A upstream_gene_variant 0.73 linezolid tsnR 1853384 c.-222G>C upstream_gene_variant 0.73 linezolid tsnR 1853387 c.-219T>G upstream_gene_variant 1.0 linezolid tsnR 1853390 c.-216G>C upstream_gene_variant 0.73 linezolid tsnR 1853393 c.-213C>T upstream_gene_variant 0.73 linezolid tsnR 1853394 c.-212_-211delCTinsGC upstream_gene_variant 1.0 linezolid tsnR 1853420 c.-186T>G upstream_gene_variant 1.0 linezolid tsnR 1853429 c.-177G>C upstream_gene_variant 1.0 linezolid tsnR 1853432 c.-174G>C upstream_gene_variant 1.0 linezolid tsnR 1853441 c.-165C>G upstream_gene_variant 0.8 linezolid tsnR 1853447 c.-159C>G upstream_gene_variant 1.0 linezolid tsnR 1853450 c.-156G>A upstream_gene_variant 0.75 linezolid tsnR 1853453 c.-153G>C upstream_gene_variant 0.75 linezolid tsnR 1853462 c.-144A>G upstream_gene_variant 1.0 linezolid tsnR 1853468 c.-138C>G upstream_gene_variant 1.0 linezolid tsnR 1853477 c.-129T>C upstream_gene_variant 1.0 linezolid tsnR 1853481 c.-125A>G upstream_gene_variant 1.0 linezolid tsnR 1853485 c.-121G>C upstream_gene_variant 1.0 linezolid tsnR 1853493 c.-113G>A upstream_gene_variant 1.0 linezolid tsnR 1853498 c.-108G>A upstream_gene_variant 1.0 linezolid tsnR 1853507 c.-99G>A upstream_gene_variant 1.0 linezolid tsnR 1853510 c.-96G>C upstream_gene_variant 1.0 linezolid tsnR 1853522 c.-84C>G upstream_gene_variant 1.0 linezolid tlyA 1917972 c.33A>G synonymous_variant 1.0 capreomycin Not assoc w R tlyA 1917975 c.36C>G synonymous_variant 0.64 capreomycin tlyA 1917981 c.42G>C synonymous_variant 1.0 capreomycin tlyA 1917990 c.51G>C synonymous_variant 0.5 capreomycin tlyA 1917993 c.54A>G synonymous_variant 0.5 capreomycin Not assoc w R - Interim tlyA 1917999 c.60T>C synonymous_variant 0.54 capreomycin tlyA 1918002 c.63A>G synonymous_variant 1.0 capreomycin tlyA 1918008 c.69C>G synonymous_variant 0.62 capreomycin tlyA 1918011 c.72G>C synonymous_variant 0.62 capreomycin tlyA 1918029 c.90C>G synonymous_variant 0.65 capreomycin tlyA 1918035 c.96G>C synonymous_variant 0.65 capreomycin tlyA 1918036 p.Arg33Ser missense_variant 1.0 capreomycin tlyA 1918047 c.108G>C synonymous_variant 0.79 capreomycin tlyA 1918048 p.Leu37Met missense_variant 1.0 capreomycin bacA 2064993 c.-265T>C upstream_gene_variant 1.0 kanamycin capreomycin streptomycin amikacin ndh 2101756 c.1287G>C synonymous_variant 1.0 isoniazid delamanid ethionamide ndh 2101768 c.1275C>G synonymous_variant 1.0 isoniazid delamanid ethionamide ndh 2101771 c.1272T>C synonymous_variant 1.0 isoniazid delamanid ethionamide ndh 2101774 c.1269T>C synonymous_variant 1.0 isoniazid delamanid ethionamide ndh 2101777 c.1266C>G synonymous_variant 1.0 isoniazid Not assoc w R - Interim delamanid ethionamide Not assoc w R - Interim ndh 2101783 c.1260T>G synonymous_variant 1.0 isoniazid delamanid ethionamide ndh 2101795 c.1248G>C synonymous_variant 0.79 isoniazid delamanid ethionamide ndh 2101804 c.1239T>G synonymous_variant 1.0 isoniazid delamanid ethionamide ndh 2101825 c.1218G>A synonymous_variant 0.82 isoniazid delamanid ethionamide ndh 2101837 p.Ala402Val missense_variant 1.0 isoniazid Uncertain significance delamanid ethionamide Uncertain significance ndh 2101858 p.Ile395Met missense_variant 0.95 isoniazid delamanid ethionamide ndh 2101873 c.1170T>C synonymous_variant 1.0 isoniazid delamanid ethionamide ndh 2101879 c.1164C>T synonymous_variant 0.94 isoniazid Not assoc w R - Interim delamanid ethionamide Not assoc w R - Interim ndh 2101890 p.Val385Leu missense_variant 0.92 isoniazid delamanid ethionamide ndh 2101988 p.Ala352Asp missense_variant 1.0 isoniazid delamanid ethionamide ndh 2101990 c.1053G>C synonymous_variant 1.0 isoniazid delamanid ethionamide ndh 2101993 c.1050A>G synonymous_variant 1.0 isoniazid delamanid ethionamide ndh 2102020 c.1023A>G synonymous_variant 0.9 isoniazid delamanid ethionamide ndh 2102617 c.426C>T synonymous_variant 0.92 isoniazid Not assoc w R - Interim delamanid ethionamide ndh 2102632 c.411C>T synonymous_variant 0.94 isoniazid Not assoc w R - Interim delamanid Not assoc w R - Interim ethionamide Not assoc w R - Interim ndh 2102638 c.405A>G synonymous_variant 0.94 isoniazid delamanid ethionamide ndh 2102644 c.399A>G synonymous_variant 1.0 isoniazid delamanid ethionamide ndh 2102671 c.372T>G synonymous_variant 1.0 isoniazid delamanid ethionamide ndh 2102674 c.369G>A synonymous_variant 0.91 isoniazid delamanid ethionamide ndh 2102677 c.366C>G synonymous_variant 0.91 isoniazid delamanid ethionamide ndh 2102683 c.360T>C synonymous_variant 1.0 isoniazid delamanid ethionamide ndh 2102686 c.357G>C synonymous_variant 0.84 isoniazid delamanid ethionamide ndh 2102700 c.343C>T synonymous_variant 1.0 isoniazid delamanid ethionamide ndh 2102711 p.Pro111Asp missense_variant 0.83 isoniazid delamanid ethionamide ndh 2102718 p.Gln109Glu missense_variant 1.0 isoniazid delamanid ethionamide ndh 2102878 c.165G>C synonymous_variant 0.92 isoniazid delamanid ethionamide ndh 2102883 c.160C>T synonymous_variant 0.92 isoniazid delamanid ethionamide ndh 2102895 c.148C>T synonymous_variant 0.94 isoniazid Not assoc w R - Interim delamanid Not assoc w R - Interim ethionamide Not assoc w R - Interim ndh 2102902 c.141C>G synonymous_variant 1.0 isoniazid delamanid ethionamide ndh 2102908 c.135C>G synonymous_variant 0.96 isoniazid delamanid ethionamide ndh 2102914 c.129C>T synonymous_variant 0.96 isoniazid delamanid ethionamide ndh 2102919 c.124C>T synonymous_variant 0.96 isoniazid Not assoc w R - Interim delamanid ethionamide Not assoc w R - Interim ndh 2102929 c.114T>C synonymous_variant 1.0 isoniazid delamanid ethionamide ndh 2102938 p.Arg35His missense_variant 1.0 isoniazid delamanid ethionamide ndh 2102959 c.84C>T synonymous_variant 1.0 isoniazid delamanid ethionamide ndh 2102962 c.81A>C synonymous_variant 1.0 isoniazid delamanid ethionamide ndh 2102971 c.72C>T synonymous_variant 1.0 isoniazid delamanid ethionamide ndh 2102977 c.66T>G synonymous_variant 1.0 isoniazid delamanid ethionamide katG 2155026 c.1086C>G synonymous_variant 1.0 isoniazid katG 2155047 c.1065C>G synonymous_variant 1.0 isoniazid katG 2155054 p.Tyr353Phe missense_variant 1.0 isoniazid katG 2155056 c.1056A>G synonymous_variant 1.0 isoniazid katG 2155062 c.1050T>C synonymous_variant 1.0 isoniazid katG 2155068 c.1044T>G synonymous_variant 1.0 isoniazid katG 2155071 c.1041T>G synonymous_variant 1.0 isoniazid katG 2155080 c.1032G>C synonymous_variant 1.0 isoniazid katG 2155083 c.1029G>C synonymous_variant 1.0 isoniazid katG 2155086 c.1026G>A synonymous_variant 1.0 isoniazid katG 2155119 c.993T>C synonymous_variant 1.0 isoniazid katG 2155131 c.981A>G synonymous_variant 1.0 isoniazid Not assoc w R - Interim katG 2155587 c.525G>C synonymous_variant 1.0 isoniazid katG 2155590 c.522A>G synonymous_variant 1.0 isoniazid katG 2155614 c.498T>G synonymous_variant 1.0 isoniazid katG 2155617 p.Ile165Leu missense_variant 1.0 isoniazid katG 2155626 c.486G>C synonymous_variant 1.0 isoniazid katG 2155632 c.480A>G synonymous_variant 1.0 isoniazid katG 2155637 p.Leu159Ile missense_variant 1.0 isoniazid katG 2155641 p.Lys157Asn missense_variant 1.0 isoniazid Uncertain significance katG 2155656 c.456G>A synonymous_variant 0.88 isoniazid katG 2155661 p.Val151Ile missense_variant 1.0 isoniazid katG 2155680 c.432G>C synonymous_variant 1.0 isoniazid katG 2155691 c.421T>C synonymous_variant 1.0 isoniazid katG 2155695 c.417C>G synonymous_variant 1.0 isoniazid katG 2155716 c.396T>C synonymous_variant 1.0 isoniazid katG 2155722 c.390G>C synonymous_variant 0.4 isoniazid katG 2155728 c.384G>C synonymous_variant 1.0 isoniazid katG 2155740 p.Gly124Gln missense_variant 1.0 isoniazid katG 2155782 c.330C>G synonymous_variant 1.0 isoniazid kasA 2517941 c.-174C>G upstream_gene_variant 0.74 isoniazid kasA 2517950 c.-165C>G upstream_gene_variant 1.0 isoniazid kasA 2517962 c.-153C>G upstream_gene_variant 0.72 isoniazid kasA 2517965 c.-150C>T upstream_gene_variant 0.71 isoniazid kasA 2517974 c.-141T>C upstream_gene_variant 0.77 isoniazid kasA 2517983 c.-132T>C upstream_gene_variant 0.8 isoniazid kasA 2517989 c.-126T>G upstream_gene_variant 1.0 isoniazid kasA 2517993 c.-122G>T upstream_gene_variant 1.0 isoniazid kasA 2518019 c.-96A>G upstream_gene_variant 1.0 isoniazid kasA 2518025 c.-90G>C upstream_gene_variant 1.0 isoniazid kasA 2518031 c.-84G>T upstream_gene_variant 1.0 isoniazid kasA 2518034 c.-81T>C upstream_gene_variant 1.0 isoniazid kasA 2518040 c.-75G>T upstream_gene_variant 0.95 isoniazid kasA 2518041 c.-74T>C upstream_gene_variant 1.0 isoniazid kasA 2518049 c.-66G>C upstream_gene_variant 1.0 isoniazid kasA 2518053 c.-62_-60delATTinsCTG upstream_gene_variant 1.0 isoniazid kasA 2518132 c.18C>T synonymous_variant 1.0 isoniazid kasA 2518138 c.24T>C synonymous_variant 1.0 isoniazid kasA 2518146 p.Phe11Tyr missense_variant 1.0 isoniazid kasA 2518152 p.Ser13Asn missense_variant 0.75 isoniazid kasA 2518162 c.48G>A synonymous_variant 1.0 isoniazid kasA 2518169 p.Val19Leu missense_variant 0.73 isoniazid kasA 2518172 p.Thr20Ala missense_variant 0.73 isoniazid kasA 2518190 p.Ser26Ala missense_variant 1.0 isoniazid kasA 2518199 p.Ile29Val missense_variant 1.0 isoniazid kasA 2518219 c.105T>C synonymous_variant 0.87 isoniazid kasA 2518220 c.106C>T synonymous_variant 1.0 isoniazid kasA 2518245 p.His44Arg missense_variant 0.95 isoniazid kasA 2518248 p.Ala45Val missense_variant 1.0 isoniazid kasA 2518261 p.Glu49Asp missense_variant 1.0 isoniazid kasA 2518273 c.159G>A synonymous_variant 1.0 isoniazid kasA 2518468 c.354A>C synonymous_variant 1.0 isoniazid kasA 2518475 c.361A>C synonymous_variant 0.77 isoniazid kasA 2518480 c.366T>C synonymous_variant 1.0 isoniazid kasA 2518492 c.378C>T synonymous_variant 0.74 isoniazid kasA 2518504 c.390T>C synonymous_variant 0.96 isoniazid kasA 2518506 p.Ala131Glu missense_variant 0.96 isoniazid kasA 2518519 c.405G>C synonymous_variant 0.93 isoniazid kasA 2518528 c.414C>G synonymous_variant 0.94 isoniazid kasA 2518534 c.420G>C synonymous_variant 0.6 isoniazid kasA 2518540 c.426T>C synonymous_variant 0.37 isoniazid kasA 2518561 c.447T>C synonymous_variant 0.94 isoniazid kasA 2518567 c.453G>C synonymous_variant 0.93 isoniazid kasA 2518570 c.456G>C synonymous_variant 0.92 isoniazid kasA 2518573 c.459G>C synonymous_variant 0.42 isoniazid kasA 2518574 p.Ile154Val missense_variant 0.92 isoniazid kasA 2518579 c.465T>C synonymous_variant 0.5 isoniazid kasA 2518582 c.468G>C synonymous_variant 0.42 isoniazid kasA 2518583 p.Gln157Glu missense_variant 0.42 isoniazid kasA 2518588 c.474T>C synonymous_variant 0.5 isoniazid kasA 2518591 c.477G>C synonymous_variant 0.5 isoniazid kasA 2518594 c.480C>T synonymous_variant 0.44 isoniazid kasA 2518597 c.483C>G synonymous_variant 0.44 isoniazid kasA 2518606 c.492G>C synonymous_variant 0.54 isoniazid kasA 2518609 p.Met165Ile missense_variant 0.96 isoniazid kasA 2518624 c.510C>G synonymous_variant 0.32 isoniazid kasA 2518636 c.522C>A synonymous_variant 0.42 isoniazid kasA 2518639 c.525G>C synonymous_variant 1.0 isoniazid kasA 2518642 c.528A>G synonymous_variant 0.44 isoniazid kasA 2518645 c.531G>C synonymous_variant 0.44 isoniazid kasA 2518651 c.537C>G synonymous_variant 0.52 isoniazid kasA 2518657 c.543G>C synonymous_variant 1.0 isoniazid kasA 2518663 c.549T>C synonymous_variant 0.5 isoniazid kasA 2518672 c.558G>C synonymous_variant 1.0 isoniazid kasA 2518678 c.564C>T synonymous_variant 1.0 isoniazid kasA 2518681 c.567C>T synonymous_variant 0.5 isoniazid kasA 2518684 c.570C>G synonymous_variant 1.0 isoniazid kasA 2518687 p.Asp191Glu missense_variant 0.56 isoniazid kasA 2518693 c.579C>G synonymous_variant 0.66 isoniazid kasA 2518702 c.588C>T synonymous_variant 1.0 isoniazid kasA 2518711 c.597A>G synonymous_variant 1.0 isoniazid kasA 2518714 c.600A>C synonymous_variant 1.0 isoniazid kasA 2518717 c.603C>G synonymous_variant 0.66 isoniazid kasA 2518723 c.609G>A synonymous_variant 0.71 isoniazid kasA 2518735 c.621C>T synonymous_variant 0.73 isoniazid kasA 2518747 c.633C>G synonymous_variant 1.0 isoniazid kasA 2518768 c.654C>G synonymous_variant 1.0 isoniazid kasA 2518783 c.669T>C synonymous_variant 1.0 isoniazid kasA 2518789 c.675G>C synonymous_variant 1.0 isoniazid kasA 2518795 c.681C>A synonymous_variant 1.0 isoniazid kasA 2518798 c.684G>C synonymous_variant 0.69 isoniazid kasA 2518825 c.711T>C synonymous_variant 0.97 isoniazid kasA 2518840 c.726C>G synonymous_variant 0.65 isoniazid kasA 2518843 c.729T>G synonymous_variant 0.64 isoniazid kasA 2518846 c.732G>C synonymous_variant 0.61 isoniazid kasA 2518864 c.750G>C synonymous_variant 0.97 isoniazid kasA 2518879 c.765A>G synonymous_variant 0.97 isoniazid kasA 2518885 c.771T>C synonymous_variant 0.93 isoniazid kasA 2518894 c.780G>A synonymous_variant 0.42 isoniazid kasA 2518898 c.784T>C synonymous_variant 0.96 isoniazid kasA 2518906 c.792A>G synonymous_variant 1.0 isoniazid kasA 2518910 p.Leu266Met missense_variant 1.0 isoniazid kasA 2518921 c.807T>C synonymous_variant 0.67 isoniazid kasA 2518927 c.813C>G synonymous_variant 0.64 isoniazid kasA 2519062 c.948T>G synonymous_variant 1.0 isoniazid kasA 2519068 c.954C>T synonymous_variant 0.92 isoniazid kasA 2519072 p.Ala320Thr missense_variant 1.0 isoniazid kasA 2519107 c.993T>C synonymous_variant 1.0 isoniazid kasA 2519108 p.Asp332Gln missense_variant 0.8 isoniazid kasA 2519116 c.1002C>G synonymous_variant 0.83 isoniazid kasA 2519122 c.1008G>C synonymous_variant 0.86 isoniazid kasA 2519137 c.1023T>G synonymous_variant 1.0 isoniazid kasA 2519140 c.1026G>A synonymous_variant 0.33 isoniazid kasA 2519146 c.1032C>A synonymous_variant 0.48 isoniazid kasA 2519152 c.1038G>C synonymous_variant 0.52 isoniazid kasA 2519158 c.1044C>T synonymous_variant 0.38 isoniazid kasA 2519167 c.1053T>G synonymous_variant 1.0 isoniazid kasA 2519173 c.1059C>G synonymous_variant 0.37 isoniazid kasA 2519194 c.1080G>T synonymous_variant 0.65 isoniazid kasA 2519195 p.Thr361Cys missense_variant 0.65 isoniazid kasA 2519203 c.1089C>G synonymous_variant 0.65 isoniazid kasA 2519206 c.1092C>T synonymous_variant 0.65 isoniazid kasA 2519209 c.1095C>T synonymous_variant 0.65 isoniazid kasA 2519215 c.1101C>T synonymous_variant 1.0 isoniazid kasA 2519227 c.1113G>C synonymous_variant 1.0 isoniazid kasA 2519236 c.1122G>A synonymous_variant 1.0 isoniazid kasA 2519239 c.1125A>C synonymous_variant 1.0 isoniazid ahpC 2726591 c.399C>G synonymous_variant 1.0 isoniazid ahpC 2726600 c.408T>C synonymous_variant 1.0 isoniazid ahpC 2726627 c.435G>A synonymous_variant 0.56 isoniazid ahpC 2726638 p.Ala149Val missense_variant 0.41 isoniazid ahpC 2726645 c.453C>G synonymous_variant 1.0 isoniazid ahpC 2726654 c.462G>C synonymous_variant 0.54 isoniazid Not assoc w R - Interim ahpC 2726657 c.465A>G synonymous_variant 1.0 isoniazid ahpC 2726660 c.468C>T synonymous_variant 0.54 isoniazid ahpC 2726669 c.477T>C synonymous_variant 1.0 isoniazid ahpC 2726672 c.480G>A synonymous_variant 0.42 isoniazid Not assoc w R - Interim ahpC 2726675 c.483A>G synonymous_variant 1.0 isoniazid ahpC 2726681 c.489A>G synonymous_variant 1.0 isoniazid ahpC 2726687 c.495C>G synonymous_variant 0.56 isoniazid ahpC 2726696 c.504C>G synonymous_variant 1.0 isoniazid folC 2747032 c.567A>G synonymous_variant 1.0 para-aminosalicylic_acid folC 2747047 c.552C>T synonymous_variant 0.81 para-aminosalicylic_acid folC 2747053 c.546C>T synonymous_variant 0.82 para-aminosalicylic_acid folC 2747062 c.537A>T synonymous_variant 1.0 para-aminosalicylic_acid folC 2747086 c.513A>C synonymous_variant 1.0 para-aminosalicylic_acid folC 2747089 c.510G>C synonymous_variant 1.0 para-aminosalicylic_acid folC 2747092 p.Asp169Glu missense_variant 0.83 para-aminosalicylic_acid folC 2747098 c.501C>G synonymous_variant 0.83 para-aminosalicylic_acid folC 2747107 c.492G>C synonymous_variant 1.0 para-aminosalicylic_acid folC 2747110 c.489T>C synonymous_variant 1.0 para-aminosalicylic_acid folC 2747113 c.486C>G synonymous_variant 1.0 para-aminosalicylic_acid folC 2747132 p.Thr156Val missense_variant 0.77 para-aminosalicylic_acid folC 2747134 c.465C>G synonymous_variant 1.0 para-aminosalicylic_acid folC 2747137 c.462G>C synonymous_variant 0.77 para-aminosalicylic_acid folC 2747293 c.306G>A synonymous_variant 0.8 para-aminosalicylic_acid folC 2747302 c.297A>C synonymous_variant 0.83 para-aminosalicylic_acid folC 2747314 c.285A>C synonymous_variant 1.0 para-aminosalicylic_acid folC 2747317 c.282C>G synonymous_variant 1.0 para-aminosalicylic_acid folC 2747335 c.264G>T synonymous_variant 1.0 para-aminosalicylic_acid Rv2477c 2782450 c.1593C>A synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2782453 c.1590C>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2782483 c.1560G>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2782501 c.1542T>C synonymous_variant 1.0 kanamycin Not assoc w R - Interim levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim streptomycin rifampicin Not assoc w R - Interim ethambutol amikacin Not assoc w R - Interim Rv2477c 2782513 c.1530G>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2782522 c.1521G>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2782528 c.1515G>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2782537 c.1506T>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2782540 c.1503T>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2782861 c.1182T>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2782864 c.1179T>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2782869 p.Ala392Thr missense_variant 1.0 kanamycin Uncertain significance levofloxacin Uncertain significance moxifloxacin Uncertain significance streptomycin rifampicin Uncertain significance ethambutol Uncertain significance amikacin Uncertain significance Rv2477c 2782876 c.1167G>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2782882 c.1161T>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2782936 c.1107G>T synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2782948 c.1095A>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2782957 c.1086A>G synonymous_variant 1.0 kanamycin Not assoc w R - Interim levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim streptomycin Not assoc w R - Interim rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim amikacin Not assoc w R - Interim Rv2477c 2782990 c.1053C>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783002 c.1041T>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783008 c.1035C>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783013 c.1030T>C synonymous_variant 1.0 kanamycin Not assoc w R - Interim levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim streptomycin Not assoc w R - Interim rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim amikacin Not assoc w R - Interim Rv2477c 2783015 p.Ser343Thr missense_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783035 c.1008G>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783040 p.Ala335Thr missense_variant 1.0 kanamycin Uncertain significance levofloxacin Uncertain significance moxifloxacin Uncertain significance streptomycin Uncertain significance rifampicin Uncertain significance ethambutol Uncertain significance amikacin Uncertain significance Rv2477c 2783044 c.999G>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783048 p.Asp332Gly missense_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783059 c.984T>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783068 p.Asp325Glu missense_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783077 c.966T>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783092 c.951A>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim amikacin Rv2477c 2783095 c.948C>G synonymous_variant 1.0 kanamycin Not assoc w R - Interim levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim streptomycin Not assoc w R - Interim rifampicin Not assoc w R ethambutol Not assoc w R - Interim amikacin Not assoc w R - Interim Rv2477c 2783098 c.945C>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783101 c.942G>T synonymous_variant 0.92 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783116 c.927T>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783140 c.903C>G synonymous_variant 0.85 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783146 c.897G>A synonymous_variant 1.0 kanamycin Not assoc w R - Interim levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim streptomycin rifampicin ethambutol amikacin Not assoc w R - Interim Rv2477c 2783149 c.894G>C synonymous_variant 1.0 kanamycin Not assoc w R - Interim levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim streptomycin rifampicin Not assoc w R - Interim ethambutol amikacin Not assoc w R - Interim Rv2477c 2783158 c.885A>C synonymous_variant 1.0 kanamycin Not assoc w R - Interim levofloxacin Not assoc w R - Interim moxifloxacin streptomycin rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim amikacin Not assoc w R - Interim Rv2477c 2783182 c.861C>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783185 c.858G>A synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783194 c.849A>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783197 c.846C>G synonymous_variant 0.89 kanamycin Not assoc w R - Interim levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim streptomycin rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim amikacin Not assoc w R - Interim Rv2477c 2783221 c.822G>C synonymous_variant 0.75 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783224 c.819C>G synonymous_variant 0.93 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783230 c.813T>G synonymous_variant 0.92 kanamycin levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim streptomycin Not assoc w R - Interim rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim amikacin Rv2477c 2783235 c.808T>C synonymous_variant 0.93 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783236 c.807G>A synonymous_variant 0.71 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783254 c.789A>G synonymous_variant 0.95 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783263 c.780G>C synonymous_variant 0.93 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783275 c.768C>G synonymous_variant 0.67 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783278 c.765A>G synonymous_variant 0.92 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783299 c.744A>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783314 c.729C>A synonymous_variant 0.95 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783320 c.723C>T synonymous_variant 0.66 kanamycin Not assoc w R - Interim levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim streptomycin rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim amikacin Not assoc w R - Interim Rv2477c 2783332 c.711T>C synonymous_variant 0.98 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783347 c.696C>G synonymous_variant 0.85 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783350 c.693T>C synonymous_variant 0.98 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783353 c.690T>C synonymous_variant 0.98 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783362 c.681G>C synonymous_variant 0.87 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783371 c.672A>G synonymous_variant 0.88 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783374 c.669G>C synonymous_variant 0.98 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783410 c.633G>C synonymous_variant 0.95 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783419 c.624G>C synonymous_variant 0.98 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783427 p.Pro206Ala missense_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin Uncertain significance ethambutol Uncertain significance amikacin Rv2477c 2783431 c.612C>T synonymous_variant 1.0 kanamycin Not assoc w R - Interim levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim streptomycin rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim amikacin Not assoc w R - Interim Rv2477c 2783437 c.606G>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783440 c.603T>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783458 c.585G>C synonymous_variant 0.93 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783461 c.582T>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783464 c.579A>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783467 c.576G>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783473 c.570A>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783502 c.541T>C synonymous_variant 1.0 kanamycin Not assoc w R - Interim levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim streptomycin Not assoc w R - Interim rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim amikacin Not assoc w R - Interim Rv2477c 2783512 c.531A>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783527 c.516A>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783535 c.508C>T synonymous_variant 0.91 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783542 c.501G>A synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783548 c.495T>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783563 c.480A>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783572 c.471A>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783578 c.465G>A synonymous_variant 0.92 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783602 c.441G>A synonymous_variant 0.87 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783605 c.438T>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783623 c.420G>A synonymous_variant 0.82 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783628 p.Ala139Ser missense_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783632 c.411C>G synonymous_variant 0.79 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783656 c.387G>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783665 c.378A>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783683 c.360A>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783691 c.352C>T synonymous_variant 0.76 kanamycin Not assoc w R - Interim levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim streptomycin Not assoc w R - Interim rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim amikacin Not assoc w R - Interim Rv2477c 2783700 p.Thr115Ser missense_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783718 c.325T>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783719 c.324A>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783743 c.300C>G synonymous_variant 0.73 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783751 p.Ile98Val missense_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783758 p.Asp95Glu missense_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783761 c.282G>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783766 p.Met93Leu missense_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783788 c.255T>G synonymous_variant 0.67 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783794 c.249G>A synonymous_variant 0.65 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783797 p.Asp82Glu missense_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783806 c.237G>C synonymous_variant 0.69 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783821 p.Gln74Leu missense_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783827 c.216C>T synonymous_variant 0.77 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783833 c.210G>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783836 c.207C>G synonymous_variant 0.82 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783843 p.Gly67Asp missense_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783846 p.Thr66Asn missense_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783857 c.186C>G synonymous_variant 0.76 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783860 c.183T>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783881 c.160_162delTTGinsCTC synonymous_variant 0.79 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783884 c.159T>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783914 c.129T>C synonymous_variant 0.32 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783920 c.123G>T synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim amikacin Rv2477c 2783938 c.105T>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783956 p.Tyr29Phe missense_variant 0.7 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783962 c.81T>C synonymous_variant 1.0 kanamycin Not assoc w R - Interim levofloxacin moxifloxacin Not assoc w R - Interim streptomycin Not assoc w R - Interim rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim amikacin Not assoc w R - Interim Rv2477c 2783968 c.75G>C synonymous_variant 0.74 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783971 c.72G>C synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783980 c.63C>G synonymous_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2783992 c.51T>C synonymous_variant 1.0 kanamycin Not assoc w R - Interim levofloxacin Not assoc w R - Interim moxifloxacin streptomycin Not assoc w R - Interim rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim amikacin Rv2477c 2784428 c.-386T>C upstream_gene_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2784429 c.-387A>G upstream_gene_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2784432 c.-390A>C upstream_gene_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2784452 c.-410C>T upstream_gene_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2784454 c.-412G>A upstream_gene_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2784456 c.-414A>C upstream_gene_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2784472 c.-430C>A upstream_gene_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin Rv2477c 2784477 c.-435T>C upstream_gene_variant 1.0 kanamycin levofloxacin moxifloxacin streptomycin rifampicin ethambutol amikacin pepQ 2859669 c.750T>C synonymous_variant 1.0 bedaquiline clofazimine pepQ 2859678 c.741A>G synonymous_variant 1.0 bedaquiline clofazimine pepQ 2859687 c.732C>T synonymous_variant 0.88 bedaquiline clofazimine pepQ 2859690 c.729C>G synonymous_variant 0.88 bedaquiline clofazimine pepQ 2859704 c.715T>C synonymous_variant 1.0 bedaquiline clofazimine pepQ 2859708 c.711C>T synonymous_variant 0.88 bedaquiline clofazimine pepQ 2859723 c.696T>C synonymous_variant 1.0 bedaquiline clofazimine Not assoc w R - Interim pepQ 2859732 c.687C>T synonymous_variant 0.93 bedaquiline clofazimine pepQ 2859735 c.684G>C synonymous_variant 1.0 bedaquiline clofazimine pepQ 2859765 c.654G>C synonymous_variant 1.0 bedaquiline clofazimine pepQ 2859771 c.648T>C synonymous_variant 0.94 bedaquiline clofazimine pepQ 2859774 c.645C>T synonymous_variant 1.0 bedaquiline clofazimine pepQ 2859778 p.Val214Asp missense_variant 1.0 bedaquiline clofazimine pepQ 2859780 p.Gln213Ala missense_variant 1.0 bedaquiline clofazimine pepQ 2859783 c.636G>C synonymous_variant 1.0 bedaquiline clofazimine pepQ 2859791 p.Ala210Ser missense_variant 1.0 bedaquiline clofazimine pepQ 2860422 c.-4G>A upstream_gene_variant 1.0 bedaquiline clofazimine pepQ 2860424 c.-6A>T upstream_gene_variant 0.69 bedaquiline clofazimine pepQ 2860425 c.-7A>G upstream_gene_variant 0.69 bedaquiline clofazimine pepQ 2860446 c.-28T>A upstream_gene_variant 1.0 bedaquiline clofazimine pepQ 2860456 c.-38G>C upstream_gene_variant 1.0 bedaquiline clofazimine pepQ 2860467 c.-49G>C upstream_gene_variant 0.8 bedaquiline clofazimine pepQ 2860472 c.-54G>C upstream_gene_variant 0.8 bedaquiline clofazimine pepQ 2860475 c.-57C>T upstream_gene_variant 1.0 bedaquiline clofazimine pepQ 2860487 c.-69G>A upstream_gene_variant 0.76 bedaquiline clofazimine pepQ 2860490 c.-72G>C upstream_gene_variant 1.0 bedaquiline clofazimine pepQ 2860493 c.-75C>T upstream_gene_variant 0.85 bedaquiline clofazimine Rv2680 2996046 c.-59A>G upstream_gene_variant 1.0 capreomycin Rv2680 2996058 c.-47C>A upstream_gene_variant 1.0 capreomycin Rv2680 2996060 c.-45T>C upstream_gene_variant 1.0 capreomycin Rv2680 2996061 c.-44C>G upstream_gene_variant 1.0 capreomycin Rv2680 2996084 c.-21A>G upstream_gene_variant 1.0 capreomycin Rv2680 2996097 c.-8A>G upstream_gene_variant 0.63 capreomycin Rv2680 2996109 p.Thr2Asn missense_variant 1.0 capreomycin Rv2680 2996111 p.Ser3Arg missense_variant 1.0 capreomycin Rv2680 2996135 p.Ser11Gly missense_variant 1.0 capreomycin Rv2681 2996957 c.219T>C synonymous_variant 1.0 capreomycin Rv2681 2996987 c.249A>G synonymous_variant 1.0 capreomycin Rv2681 2997011 c.273C>T synonymous_variant 0.95 capreomycin Rv2681 2997013 p.Gly92Val missense_variant 1.0 capreomycin Rv2681 2997021 c.283T>C synonymous_variant 1.0 capreomycin Rv2681 2997028 p.Val97Ala missense_variant 1.0 capreomycin Rv2681 2997033 p.Ala99Arg missense_variant 1.0 capreomycin Rv2681 2997038 c.300G>C synonymous_variant 1.0 capreomycin Rv2681 2997053 c.315C>G synonymous_variant 1.0 capreomycin Rv2681 2997054 p.Ser106Gly missense_variant 1.0 capreomycin Uncertain significance Rv2681 2997060 p.Asn108Asp missense_variant 1.0 capreomycin Rv2681 2997078 p.Ser114Ala missense_variant 0.92 capreomycin Uncertain significance Rv2752c 3064776 c.1416T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3064783 p.Ser470Glu missense_variant 0.91 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3064785 c.1407G>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3064790 c.1402T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3064803 c.1389C>G synonymous_variant 0.91 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3064815 c.1377T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3064832 p.Ala454Thr missense_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3064835 p.Ile453Val missense_variant 0.64 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3064838 c.1354T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3064839 c.1353C>T synonymous_variant 0.64 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3064860 c.1332G>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3064962 c.1230C>G synonymous_variant 0.42 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3064973 p.Ala407Ser missense_variant 0.33 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3064974 c.1218T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3064989 c.1203G>C synonymous_variant 0.72 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3064998 c.1194A>C synonymous_variant 0.96 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065040 c.1150_1152delCTCinsTTG synonymous_variant 0.98 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065049 c.1143G>A synonymous_variant 0.93 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065055 c.1137T>G synonymous_variant 0.97 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065061 c.1131C>T synonymous_variant 0.9 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065064 c.1128G>C synonymous_variant 0.97 levofloxacin moxifloxacin isoniazid Not assoc w R - Interim rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim Rv2752c 3065070 c.1122C>A synonymous_variant 0.9 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065073 c.1119C>G synonymous_variant 0.96 levofloxacin moxifloxacin isoniazid Not assoc w R - Interim rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim Rv2752c 3065085 c.1105_1107delAGGinsCGC synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065088 c.1104A>G synonymous_variant 1.0 levofloxacin Not assoc w R - Interim moxifloxacin isoniazid Not assoc w R - Interim rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim Rv2752c 3065097 c.1095C>T synonymous_variant 0.93 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065106 c.1086C>G synonymous_variant 0.9 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065109 c.1081_1083delAGAinsCGG synonymous_variant 0.96 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065130 c.1062A>G synonymous_variant 0.95 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065133 c.1059T>C synonymous_variant 0.96 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065142 c.1050A>C synonymous_variant 0.97 levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim isoniazid Not assoc w R - Interim rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim Rv2752c 3065146 p.Phe349Tyr missense_variant 0.97 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065154 c.1038G>A synonymous_variant 0.92 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065174 c.1018C>T synonymous_variant 0.88 levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim isoniazid Not assoc w R - Interim rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim Rv2752c 3065186 c.1006T>C synonymous_variant 0.98 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065190 p.Ile334Val missense_variant 0.98 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065199 c.993T>C synonymous_variant 0.81 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065202 c.990T>G synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065205 c.987T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065210 c.982T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065223 c.969T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065229 c.963G>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065232 c.960T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065235 c.957G>C synonymous_variant 0.74 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065241 c.951A>G synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065262 c.930G>A synonymous_variant 0.37 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065268 c.924A>G synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065901 c.291A>G synonymous_variant 0.88 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065916 c.276T>C synonymous_variant 0.81 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065919 c.273G>A synonymous_variant 0.81 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065922 c.270T>C synonymous_variant 0.82 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065946 p.Gly82Ala missense_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065949 c.243C>T synonymous_variant 0.75 levofloxacin Not assoc w R - Interim moxifloxacin isoniazid Not assoc w R - Interim rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim Rv2752c 3065957 c.235T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065963 c.229C>T synonymous_variant 0.74 levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim isoniazid Not assoc w R - Interim rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim Rv2752c 3065979 c.213T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065993 p.Val67Ile missense_variant 1.0 levofloxacin moxifloxacin isoniazid Uncertain significance rifampicin Uncertain significance ethambutol Uncertain significance Rv2752c 3065994 c.198T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3065997 c.195C>G synonymous_variant 0.65 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066002 p.Met64Leu missense_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066006 c.186G>C synonymous_variant 0.58 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066017 c.175C>T synonymous_variant 0.65 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066024 c.168T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066040 p.Gly51Thr missense_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066042 c.150T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066050 p.Leu48Met missense_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066054 c.138T>G synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066066 c.126T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066071 c.121T>C synonymous_variant 0.5 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066309 c.-118T>C upstream_gene_variant 0.91 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066330 c.-139G>T upstream_gene_variant 0.92 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066335 c.-144T>C upstream_gene_variant 0.95 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066336 c.-145C>T upstream_gene_variant 0.63 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066339 c.-148G>C upstream_gene_variant 0.95 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066350 c.-159T>C upstream_gene_variant 0.6 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066351 c.-160G>C upstream_gene_variant 0.6 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066354 c.-163G>C upstream_gene_variant 0.59 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066365 c.-174C>T upstream_gene_variant 0.7 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066366 c.-175C>G upstream_gene_variant 0.7 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066387 c.-196G>A upstream_gene_variant 0.74 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066399 c.-210_-208delATTinsGTC upstream_gene_variant 0.96 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066402 c.-211C>T upstream_gene_variant 0.78 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066420 c.-229C>G upstream_gene_variant 0.8 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066423 c.-232C>T upstream_gene_variant 0.82 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066426 c.-235T>C upstream_gene_variant 0.88 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066429 c.-238G>A upstream_gene_variant 0.88 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066432 c.-241T>C upstream_gene_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066437 c.-246G>A upstream_gene_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066459 c.-268T>G upstream_gene_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066501 c.-310G>C upstream_gene_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066513 c.-322C>G upstream_gene_variant 0.68 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066527 c.-336C>T upstream_gene_variant 0.75 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066543 c.-352C>A upstream_gene_variant 0.63 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066549 c.-358T>C upstream_gene_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066560 c.-369C>T upstream_gene_variant 0.66 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066561 c.-370A>G upstream_gene_variant 0.34 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066567 c.-376C>A upstream_gene_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066573 c.-382G>C upstream_gene_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066579 c.-388A>G upstream_gene_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066583 c.-392C>G upstream_gene_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066597 c.-406C>T upstream_gene_variant 0.77 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066603 c.-412A>G upstream_gene_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066612 c.-421G>A upstream_gene_variant 0.81 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066617 c.-426G>A upstream_gene_variant 0.95 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066618 c.-427A>G upstream_gene_variant 0.96 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066633 c.-442T>C upstream_gene_variant 0.97 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066644 c.-453T>C upstream_gene_variant 0.96 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066647 c.-456G>A upstream_gene_variant 1.0 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066654 c.-463G>C upstream_gene_variant 0.97 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066676 c.-485C>T upstream_gene_variant 0.96 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066685 c.-495_-494delGGinsCC upstream_gene_variant 0.96 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066687 c.-496G>T upstream_gene_variant 0.96 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066696 c.-505T>C upstream_gene_variant 0.96 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066707 c.-516A>G upstream_gene_variant 0.95 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066807 c.-616T>C upstream_gene_variant 0.85 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066810 c.-619G>A upstream_gene_variant 0.92 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066819 c.-628T>C upstream_gene_variant 0.91 levofloxacin moxifloxacin isoniazid rifampicin ethambutol Rv2752c 3066822 c.-631T>C upstream_gene_variant 0.91 levofloxacin moxifloxacin isoniazid rifampicin ethambutol thyX 3067301 c.645C>T synonymous_variant 0.73 para-aminosalicylic_acid thyX 3067316 c.630A>C synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067319 c.627G>T synonymous_variant 0.85 para-aminosalicylic_acid thyX 3067325 c.621A>G synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067337 c.609C>T synonymous_variant 0.86 para-aminosalicylic_acid thyX 3067340 c.606G>A synonymous_variant 0.87 para-aminosalicylic_acid thyX 3067349 c.597G>C synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067355 c.591A>G synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067358 c.588C>T synonymous_variant 0.87 para-aminosalicylic_acid thyX 3067379 c.567C>T synonymous_variant 0.8 para-aminosalicylic_acid thyX 3067385 c.561C>G synonymous_variant 0.77 para-aminosalicylic_acid thyX 3067394 c.552G>C synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067400 c.546C>G synonymous_variant 0.74 para-aminosalicylic_acid thyX 3067406 c.540A>G synonymous_variant 0.7 para-aminosalicylic_acid thyX 3067418 c.528C>G synonymous_variant 0.63 para-aminosalicylic_acid thyX 3067427 c.519G>C synonymous_variant 0.58 para-aminosalicylic_acid thyX 3067430 c.516C>T synonymous_variant 0.53 para-aminosalicylic_acid thyX 3067439 c.507A>G synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067442 c.504C>A synonymous_variant 0.42 para-aminosalicylic_acid thyX 3067445 c.501C>G synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067448 c.498G>A synonymous_variant 0.39 para-aminosalicylic_acid thyX 3067454 c.492C>T synonymous_variant 0.38 para-aminosalicylic_acid thyX 3067457 c.489C>G synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067465 p.Ile161Val missense_variant 1.0 para-aminosalicylic_acid thyX 3067475 c.471A>G synonymous_variant 0.62 para-aminosalicylic_acid thyX 3067490 c.456C>G synonymous_variant 0.67 para-aminosalicylic_acid thyX 3067493 c.453A>G synonymous_variant 0.72 para-aminosalicylic_acid thyX 3067515 p.Ser144Thr missense_variant 1.0 para-aminosalicylic_acid thyX 3067545 p.Glu134Ala missense_variant 1.0 para-aminosalicylic_acid thyX 3067565 p.Asp127Glu missense_variant 1.0 para-aminosalicylic_acid thyX 3067570 p.Ala126Pro missense_variant 1.0 para-aminosalicylic_acid thyX 3067577 c.369G>A synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067583 c.363C>G synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067601 p.Arg115His missense_variant 1.0 para-aminosalicylic_acid thyX 3067611 p.Lys112Thr missense_variant 1.0 para-aminosalicylic_acid thyX 3067619 c.327A>C synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067631 c.315C>G synonymous_variant 0.63 para-aminosalicylic_acid thyX 3067634 c.312C>G synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067640 c.306G>A synonymous_variant 0.43 para-aminosalicylic_acid thyX 3067652 c.294T>C synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067661 c.285C>A synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067676 c.270C>G synonymous_variant 0.75 para-aminosalicylic_acid thyX 3067679 p.Cys89Leu missense_variant 0.75 para-aminosalicylic_acid thyX 3067685 c.261A>G synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067693 p.Ile85Val missense_variant 1.0 para-aminosalicylic_acid thyX 3067694 c.252G>C synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067718 c.228C>G synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067727 c.219A>C synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067739 c.207T>C synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067742 c.204A>C synonymous_variant 0.84 para-aminosalicylic_acid thyX 3067761 p.Arg62Lys missense_variant 1.0 para-aminosalicylic_acid thyX 3067765 p.Leu61Ile missense_variant 1.0 para-aminosalicylic_acid thyX 3067781 c.165C>G synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067793 c.153T>C synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067802 c.144C>G synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067814 c.132T>C synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067817 c.129C>T synonymous_variant 0.67 para-aminosalicylic_acid thyX 3067841 c.105G>T synonymous_variant 0.46 para-aminosalicylic_acid thyX 3067850 c.96A>C synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067869 p.Thr26Ser missense_variant 1.0 para-aminosalicylic_acid thyX 3067874 c.72C>G synonymous_variant 0.8 para-aminosalicylic_acid thyX 3067877 c.69G>C synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067883 p.Pro21Ser missense_variant 0.79 para-aminosalicylic_acid thyX 3067886 c.60A>C synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067889 c.57C>G synonymous_variant 1.0 para-aminosalicylic_acid thyX 3067898 p.Asp16Glu missense_variant 1.0 para-aminosalicylic_acid thyA 3073770 p.Asp234His missense_variant 0.9 para-aminosalicylic_acid thyA 3073776 c.696A>T synonymous_variant 0.9 para-aminosalicylic_acid thyA 3073781 p.Leu231Phe missense_variant 0.9 para-aminosalicylic_acid thyA 3073787 p.Lys229Glu missense_variant 0.93 para-aminosalicylic_acid thyA 3073794 c.678A>G synonymous_variant 0.94 para-aminosalicylic_acid thyA 3073818 p.Leu218Ile missense_variant 0.69 para-aminosalicylic_acid thyA 3073827 c.645A>G synonymous_variant 1.0 para-aminosalicylic_acid thyA 3073830 p.Glu214Asp missense_variant 0.6 para-aminosalicylic_acid thyA 3073836 c.636C>T synonymous_variant 0.56 para-aminosalicylic_acid thyA 3073839 c.633T>C synonymous_variant 1.0 para-aminosalicylic_acid thyA 3073854 c.618C>T synonymous_variant 0.6 para-aminosalicylic_acid thyA 3073863 c.609T>C synonymous_variant 1.0 para-aminosalicylic_acid thyA 3073887 p.Ser195Asp missense_variant 0.64 para-aminosalicylic_acid thyA 3073892 c.580T>C synonymous_variant 0.96 para-aminosalicylic_acid thyA 3073905 c.567C>G synonymous_variant 0.76 para-aminosalicylic_acid thyA 3073925 c.547T>C synonymous_variant 0.96 para-aminosalicylic_acid thyA 3073929 c.543T>C synonymous_variant 0.97 para-aminosalicylic_acid thyA 3073944 c.528C>T synonymous_variant 0.94 para-aminosalicylic_acid thyA 3073953 c.519T>C synonymous_variant 1.0 para-aminosalicylic_acid thyA 3073956 c.516G>C synonymous_variant 1.0 para-aminosalicylic_acid thyA 3073959 c.513T>C synonymous_variant 1.0 para-aminosalicylic_acid thyA 3073968 c.504C>G synonymous_variant 0.91 para-aminosalicylic_acid thyA 3073977 c.495A>G synonymous_variant 1.0 para-aminosalicylic_acid thyA 3073989 c.483T>C synonymous_variant 1.0 para-aminosalicylic_acid thyA 3074001 c.471C>G synonymous_variant 0.97 para-aminosalicylic_acid thyA 3074004 c.468T>C synonymous_variant 1.0 para-aminosalicylic_acid thyA 3074037 c.435C>G synonymous_variant 1.0 para-aminosalicylic_acid thyA 3074053 p.Arg140Gln missense_variant 1.0 para-aminosalicylic_acid thyA 3074056 p.Glu139Pro missense_variant 1.0 para-aminosalicylic_acid thyA 3074070 c.402C>T synonymous_variant 0.83 para-aminosalicylic_acid thyA 3074076 c.396C>G synonymous_variant 0.81 para-aminosalicylic_acid thyA 3074172 c.300G>C synonymous_variant 0.91 para-aminosalicylic_acid thyA 3074175 c.297A>G synonymous_variant 0.92 para-aminosalicylic_acid thyA 3074181 c.291A>G synonymous_variant 0.93 para-aminosalicylic_acid thyA 3074187 c.285T>C synonymous_variant 0.94 para-aminosalicylic_acid thyA 3074205 p.Glu89Asp missense_variant 0.92 para-aminosalicylic_acid thyA 3074214 c.258T>C synonymous_variant 0.91 para-aminosalicylic_acid thyA 3074244 c.228A>G synonymous_variant 0.88 para-aminosalicylic_acid thyA 3074254 p.His73Arg missense_variant 0.78 para-aminosalicylic_acid thyA 3074262 c.210T>C synonymous_variant 0.59 para-aminosalicylic_acid thyA 3074267 p.Ile69Val missense_variant 0.95 para-aminosalicylic_acid thyA 3074268 c.204T>C synonymous_variant 0.95 para-aminosalicylic_acid thyA 3074297 c.175C>T synonymous_variant 0.94 para-aminosalicylic_acid thyA 3074301 c.171C>T synonymous_variant 0.93 para-aminosalicylic_acid thyA 3074305 p.Ala56Val missense_variant 0.92 para-aminosalicylic_acid thyA 3074307 c.165A>G synonymous_variant 0.92 para-aminosalicylic_acid thyA 3074313 c.159A>G synonymous_variant 0.93 para-aminosalicylic_acid thyA 3074316 p.Phe52Leu missense_variant 0.93 para-aminosalicylic_acid thyA 3074322 c.150C>G synonymous_variant 0.93 para-aminosalicylic_acid thyA 3074325 c.147A>G synonymous_variant 0.93 para-aminosalicylic_acid thyA 3074334 c.138T>C synonymous_variant 0.94 para-aminosalicylic_acid thyA 3074337 c.135C>G synonymous_variant 0.83 para-aminosalicylic_acid thyA 3074360 c.112T>C synonymous_variant 0.85 para-aminosalicylic_acid thyA 3074361 c.111T>C synonymous_variant 0.83 para-aminosalicylic_acid thyA 3074364 c.108T>C synonymous_variant 0.83 para-aminosalicylic_acid thyA 3074372 p.Met34Leu missense_variant 0.9 para-aminosalicylic_acid thyA 3074373 c.99G>A synonymous_variant 0.8 para-aminosalicylic_acid thyA 3074397 c.75A>G synonymous_variant 0.54 para-aminosalicylic_acid ald 3087653 c.834A>G synonymous_variant 1.0 cycloserine ald 3087659 c.840G>C synonymous_variant 0.87 cycloserine ald 3087672 p.His285Asp missense_variant 1.0 cycloserine ald 3087686 c.867C>G synonymous_variant 0.75 cycloserine ald 3087692 c.873C>T synonymous_variant 0.68 cycloserine ald 3087699 p.Leu294Met missense_variant 0.68 cycloserine ald 3087726 p.Ala303Ser missense_variant 1.0 cycloserine ald 3087729 p.Ser304Ala missense_variant 1.0 cycloserine ald 3087734 c.915G>T synonymous_variant 0.61 cycloserine ald 3087737 c.918G>C synonymous_variant 0.39 cycloserine ald 3087743 c.924G>C synonymous_variant 0.61 cycloserine ald 3087749 c.930C>G synonymous_variant 0.36 cycloserine ald 3087750 p.Tyr311Val missense_variant 0.36 cycloserine ald 3087761 c.942C>G synonymous_variant 1.0 cycloserine ald 3087770 c.951G>C synonymous_variant 1.0 cycloserine lpqB 3623363 c.1548T>C synonymous_variant 1.0 rifampicin bedaquiline lpqB 3623388 p.Thr508Asn missense_variant 0.8 rifampicin bedaquiline lpqB 3623424 p.Ser496Tyr missense_variant 0.8 rifampicin bedaquiline lpqB 3623987 c.924G>C synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624008 c.903T>C synonymous_variant 0.89 rifampicin Not assoc w R - Interim bedaquiline lpqB 3624023 c.888G>C synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624032 c.879T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline Not assoc w R - Interim lpqB 3624035 c.874_876delAGGinsCGA synonymous_variant 0.94 rifampicin bedaquiline lpqB 3624041 p.Glu290Asp missense_variant 1.0 rifampicin bedaquiline lpqB 3624050 c.861C>G synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624053 c.858C>G synonymous_variant 0.8 rifampicin bedaquiline lpqB 3624061 p.Ala284Thr missense_variant 0.78 rifampicin bedaquiline lpqB 3624077 c.834G>C synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624086 c.825C>T synonymous_variant 0.46 rifampicin Not assoc w R - Interim bedaquiline Not assoc w R - Interim lpqB 3624092 c.817_819delAGGinsCGA synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624100 c.811T>C synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624101 c.810C>G synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624107 c.804C>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline lpqB 3624113 c.798G>A synonymous_variant 0.59 rifampicin bedaquiline lpqB 3624116 c.795A>G synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624119 c.792C>G synonymous_variant 0.38 rifampicin bedaquiline lpqB 3624124 p.Leu263Val missense_variant 0.34 rifampicin bedaquiline lpqB 3624125 c.786A>G synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624152 c.759C>G synonymous_variant 0.61 rifampicin bedaquiline lpqB 3624163 p.Glu250Gln missense_variant 0.58 rifampicin bedaquiline lpqB 3624166 p.Met249Leu missense_variant 1.0 rifampicin bedaquiline lpqB 3624167 c.744C>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline lpqB 3624172 p.Val247Ile missense_variant 0.68 rifampicin bedaquiline lpqB 3624173 c.738A>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline lpqB 3624188 c.723G>T synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624194 c.717C>T synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624199 p.Ile238Val missense_variant 0.65 rifampicin bedaquiline lpqB 3624200 c.711A>G synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624209 c.702A>C synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624221 c.690G>C synonymous_variant 0.68 rifampicin bedaquiline lpqB 3624224 c.687T>C synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624371 c.540T>G synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624377 c.534C>G synonymous_variant 0.92 rifampicin Not assoc w R - Interim bedaquiline lpqB 3624389 c.522C>G synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624419 c.492C>T synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624422 c.489G>C synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624635 c.276C>T synonymous_variant 0.79 rifampicin bedaquiline lpqB 3624646 c.265T>C synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624649 c.262T>C synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624652 p.Ala87Ser missense_variant 0.69 rifampicin bedaquiline lpqB 3624656 c.255C>T synonymous_variant 0.69 rifampicin bedaquiline lpqB 3624671 p.Ala80Ser missense_variant 0.71 rifampicin bedaquiline lpqB 3624749 c.162G>A synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline lpqB 3624755 c.154_156delTTAinsCTG synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624770 c.141T>C synonymous_variant 0.69 rifampicin bedaquiline lpqB 3624776 c.135T>C synonymous_variant 1.0 rifampicin bedaquiline lpqB 3624783 p.Ser43Thr missense_variant 1.0 rifampicin bedaquiline lpqB 3624788 c.123A>G synonymous_variant 0.67 rifampicin Not assoc w R - Interim bedaquiline Not assoc w R - Interim lpqB 3624797 c.114T>C synonymous_variant 0.64 rifampicin bedaquiline lpqB 3625027 c.-117C>G upstream_gene_variant 0.8 rifampicin bedaquiline mtrB 3625032 c.1582C>T synonymous_variant 0.82 rifampicin Not assoc w R - Interim bedaquiline Not assoc w R - Interim lpqB 3625054 c.-144C>T upstream_gene_variant 0.86 rifampicin bedaquiline lpqB 3625057 c.-147C>T upstream_gene_variant 0.93 rifampicin bedaquiline mtrB 3625065 p.Met517Leu missense_variant 1.0 rifampicin Not assoc w R bedaquiline Uncertain significance lpqB 3625066 c.-156G>A upstream_gene_variant 0.84 rifampicin bedaquiline lpqB 3625069 c.-159T>G upstream_gene_variant 0.94 rifampicin bedaquiline lpqB 3625084 c.-174C>T upstream_gene_variant 0.83 rifampicin bedaquiline mtrB 3625095 p.Glu507Gln missense_variant 0.82 rifampicin bedaquiline lpqB 3625096 c.-186C>T upstream_gene_variant 0.82 rifampicin bedaquiline lpqB 3625117 c.-207T>G upstream_gene_variant 0.93 rifampicin bedaquiline lpqB 3625123 c.-213T>C upstream_gene_variant 0.94 rifampicin bedaquiline lpqB 3625138 c.-228C>G upstream_gene_variant 0.95 rifampicin bedaquiline lpqB 3625147 c.-237C>G upstream_gene_variant 0.67 rifampicin bedaquiline mtrB 3625162 c.1452T>C synonymous_variant 0.98 rifampicin Not assoc w R - Interim bedaquiline Not assoc w R - Interim lpqB 3625183 c.-273G>C upstream_gene_variant 0.65 rifampicin bedaquiline lpqB 3625186 c.-276T>C upstream_gene_variant 0.96 rifampicin bedaquiline mtrB 3625189 c.1425A>G synonymous_variant 0.96 rifampicin Not assoc w R - Interim bedaquiline lpqB 3625195 c.-285A>G upstream_gene_variant 0.96 rifampicin bedaquiline lpqB 3625198 c.-288C>G upstream_gene_variant 0.65 rifampicin bedaquiline lpqB 3625201 c.-291T>C upstream_gene_variant 0.95 rifampicin bedaquiline lpqB 3625207 c.-297C>G upstream_gene_variant 0.67 rifampicin bedaquiline lpqB 3625213 c.-303C>T upstream_gene_variant 0.68 rifampicin bedaquiline mtrB 3625222 c.1392T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline lpqB 3625234 c.-324G>A upstream_gene_variant 0.75 rifampicin bedaquiline lpqB 3625240 c.-330T>C upstream_gene_variant 1.0 rifampicin bedaquiline lpqB 3625537 c.-627T>C upstream_gene_variant 1.0 rifampicin bedaquiline lpqB 3625543 c.-633G>C upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3625569 c.1045T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline mtrB 3625572 p.Thr348Ser missense_variant 0.87 rifampicin bedaquiline lpqB 3625579 c.-669A>G upstream_gene_variant 1.0 rifampicin bedaquiline lpqB 3625594 c.-684T>C upstream_gene_variant 1.0 rifampicin bedaquiline lpqB 3625602 c.-692T>C upstream_gene_variant 1.0 rifampicin bedaquiline lpqB 3625612 c.-702G>C upstream_gene_variant 1.0 rifampicin bedaquiline lpqB 3625624 c.-714C>G upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3625636 p.Ala326Glu missense_variant 1.0 rifampicin bedaquiline lpqB 3625648 c.-738T>C upstream_gene_variant 0.61 rifampicin bedaquiline mtrB 3625656 c.958T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline Not assoc w R - Interim lpqB 3625663 c.-753G>C upstream_gene_variant 1.0 rifampicin bedaquiline lpqB 3625675 c.-765G>C upstream_gene_variant 0.74 rifampicin bedaquiline lpqB 3625687 c.-777G>C upstream_gene_variant 1.0 rifampicin bedaquiline lpqB 3625690 c.-780T>G upstream_gene_variant 1.0 rifampicin bedaquiline lpqB 3625696 c.-786A>G upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3625699 c.915C>T synonymous_variant 0.8 rifampicin Not assoc w R - Interim bedaquiline lpqB 3625717 c.-807C>T upstream_gene_variant 0.8 rifampicin bedaquiline mtrB 3625747 c.867G>C synonymous_variant 0.74 rifampicin Not assoc w R - Interim bedaquiline mtrB 3625755 p.Ala287Thr missense_variant 1.0 rifampicin Uncertain significance bedaquiline lpqB 3625762 c.-852A>C upstream_gene_variant 0.73 rifampicin bedaquiline mtrB 3625765 c.849C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline lpqB 3625783 c.-873C>T upstream_gene_variant 0.72 rifampicin bedaquiline mtrB 3625797 p.Val273Met missense_variant 0.32 rifampicin Uncertain significance bedaquiline Uncertain significance lpqB 3625801 c.-891G>C upstream_gene_variant 0.68 rifampicin bedaquiline mtrB 3625806 c.808A>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline lpqB 3625849 c.-939T>C upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3625852 c.762A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline lpqB 3625864 c.-954T>G upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3625867 c.747A>G synonymous_variant 0.67 rifampicin Not assoc w R - Interim bedaquiline lpqB 3625870 c.-960C>G upstream_gene_variant 0.67 rifampicin bedaquiline mtrB 3625876 c.738G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline lpqB 3625909 c.-999T>C upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3625912 c.702G>C synonymous_variant 0.83 rifampicin bedaquiline mtrB 3625915 c.699G>C synonymous_variant 0.83 rifampicin bedaquiline mtrB 3626353 c.261C>G synonymous_variant 1.0 rifampicin bedaquiline mtrB 3626362 c.252A>C synonymous_variant 1.0 rifampicin bedaquiline mtrB 3626368 c.246G>A synonymous_variant 0.71 rifampicin bedaquiline mtrB 3626377 p.Asp79Glu missense_variant 1.0 rifampicin bedaquiline mtrB 3626383 p.Ala77Gly missense_variant 1.0 rifampicin bedaquiline mtrB 3626389 p.Arg75Lys missense_variant 0.82 rifampicin bedaquiline mtrB 3626400 p.Ile72Val missense_variant 1.0 rifampicin bedaquiline mtrB 3626404 c.210C>T synonymous_variant 0.96 rifampicin Not assoc w R - Interim bedaquiline Not assoc w R - Interim mtrB 3626407 c.207C>G synonymous_variant 1.0 rifampicin bedaquiline mtrB 3626437 c.177T>C synonymous_variant 1.0 rifampicin bedaquiline mtrB 3626443 c.171T>G synonymous_variant 1.0 rifampicin bedaquiline mtrB 3626455 c.159C>G synonymous_variant 1.0 rifampicin bedaquiline mtrB 3626461 c.153A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline mtrB 3626470 c.144A>C synonymous_variant 1.0 rifampicin bedaquiline mtrB 3626473 c.141T>G synonymous_variant 1.0 rifampicin bedaquiline mtrB 3626476 c.138C>G synonymous_variant 1.0 rifampicin bedaquiline mtrB 3626488 c.126C>G synonymous_variant 1.0 rifampicin bedaquiline mtrB 3626704 c.-91C>T upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3626711 c.-98T>C upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3626726 c.-113T>C upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3626729 c.-116G>A upstream_gene_variant 0.41 rifampicin bedaquiline mtrB 3626732 c.-119A>G upstream_gene_variant 0.42 rifampicin bedaquiline mtrB 3626750 c.-137T>C upstream_gene_variant 0.59 rifampicin bedaquiline mtrA 3626759 c.591T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline mtrB 3626773 c.-160C>T upstream_gene_variant 0.52 rifampicin bedaquiline mtrB 3626774 c.-163_-161delAGGinsCGC upstream_gene_variant 1.0 rifampicin bedaquiline mtrA 3626777 c.573C>T synonymous_variant 0.52 rifampicin Not assoc w R - Interim bedaquiline mtrB 3626780 c.-167T>C upstream_gene_variant 0.52 rifampicin bedaquiline mtrB 3626783 c.-170C>G upstream_gene_variant 1.0 rifampicin bedaquiline mtrA 3626786 c.564A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline mtrA 3626792 c.558G>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline mtrB 3626798 c.-185T>A upstream_gene_variant 1.0 rifampicin bedaquiline mtrA 3626804 c.546A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline mtrA 3626825 c.525T>A synonymous_variant 0.7 rifampicin Not assoc w R - Interim bedaquiline mtrB 3626843 c.-230G>A upstream_gene_variant 0.67 rifampicin bedaquiline mtrA 3626846 c.504G>A synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline mtrB 3626849 c.-236C>T upstream_gene_variant 0.66 rifampicin bedaquiline mtrB 3626858 c.-245A>G upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3626876 c.-263A>G upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3626885 c.-272A>G upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3626890 c.-277T>C upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3626903 c.-290T>C upstream_gene_variant 1.0 rifampicin bedaquiline mtrA 3626912 c.438T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline mtrB 3626924 c.-311G>C upstream_gene_variant 0.62 rifampicin bedaquiline mtrB 3626927 c.-314G>A upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3626930 c.-317A>G upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3626933 c.-320C>T upstream_gene_variant 0.67 rifampicin bedaquiline mtrB 3626942 c.-329A>C upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3626954 c.-341C>G upstream_gene_variant 0.72 rifampicin bedaquiline mtrB 3626957 c.-344G>C upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3626969 c.-356C>G upstream_gene_variant 0.79 rifampicin bedaquiline mtrB 3626972 c.-359A>G upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3626987 c.-374C>G upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3626996 c.-383G>A upstream_gene_variant 0.89 rifampicin bedaquiline mtrB 3627008 c.-395G>C upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3627011 c.-398T>G upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3627023 c.-410C>G upstream_gene_variant 0.79 rifampicin bedaquiline mtrB 3627059 c.-446G>C upstream_gene_variant 0.75 rifampicin bedaquiline mtrA 3627068 c.282T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline mtrA 3627080 c.270T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline mtrA 3627098 c.252A>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline mtrB 3627101 c.-488C>G upstream_gene_variant 0.71 rifampicin bedaquiline mtrB 3627104 c.-491C>G upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3627110 c.-497G>C upstream_gene_variant 0.71 rifampicin bedaquiline mtrB 3627122 c.-509T>C upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3627128 c.-515T>C upstream_gene_variant 0.7 rifampicin bedaquiline mtrB 3627137 c.-526_-524delTTGinsCTA upstream_gene_variant 0.68 rifampicin bedaquiline mtrB 3627143 c.-530G>C upstream_gene_variant 0.63 rifampicin bedaquiline mtrB 3627167 c.-554T>C upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3627181 c.-568T>C upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3627182 c.-569T>C upstream_gene_variant 1.0 rifampicin bedaquiline mtrA 3627187 c.163T>C synonymous_variant 0.53 rifampicin Not assoc w R - Interim bedaquiline mtrA 3627188 c.162A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim bedaquiline mtrB 3627197 c.-584T>C upstream_gene_variant 0.59 rifampicin bedaquiline mtrB 3627203 c.-590C>G upstream_gene_variant 0.56 rifampicin bedaquiline mtrB 3627209 c.-596G>A upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3627212 c.-599C>T upstream_gene_variant 0.55 rifampicin bedaquiline mtrB 3627218 c.-605G>C upstream_gene_variant 0.55 rifampicin bedaquiline mtrA 3627221 c.129C>T synonymous_variant 0.41 rifampicin Not assoc w R - Interim bedaquiline mtrA 3627227 c.123T>C synonymous_variant 0.37 rifampicin Not assoc w R - Interim bedaquiline mtrB 3627233 c.-620T>G upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3627236 c.-623T>C upstream_gene_variant 1.0 rifampicin bedaquiline mtrA 3627239 c.111C>T synonymous_variant 0.52 rifampicin Not assoc w R - Interim bedaquiline Not assoc w R - Interim mtrA 3627242 c.108C>T synonymous_variant 0.46 rifampicin Not assoc w R - Interim bedaquiline mtrB 3627254 c.-641C>T upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3627263 c.-650C>T upstream_gene_variant 0.44 rifampicin bedaquiline mtrB 3627266 c.-653A>G upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3627272 c.-659G>C upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3627275 c.-662G>T upstream_gene_variant 0.44 rifampicin bedaquiline mtrB 3627278 c.-665G>T upstream_gene_variant 0.58 rifampicin bedaquiline mtrB 3627287 c.-674C>G upstream_gene_variant 0.64 rifampicin bedaquiline mtrB 3627296 c.-683T>G upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3627299 c.-688_-686delTTGinsCTC upstream_gene_variant 1.0 rifampicin bedaquiline mtrB 3627317 c.-704T>C upstream_gene_variant 1.0 rifampicin bedaquiline mtrA 3627343 p.Thr3Ser missense_variant 1.0 rifampicin bedaquiline mtrB 3627359 c.-746T>G upstream_gene_variant 0.88 rifampicin bedaquiline mtrB 3627360 c.-747G>C upstream_gene_variant 1.0 rifampicin bedaquiline fbiB 3642662 c.1128C>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiB 3642668 c.1134A>T synonymous_variant 1.0 pretomanid delamanid clofazimine fbiB 3642677 c.1143A>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiB 3642680 c.1146A>G synonymous_variant 1.0 pretomanid delamanid clofazimine fbiB 3642683 c.1149C>G synonymous_variant 0.82 pretomanid delamanid clofazimine fbiB 3642695 c.1161G>C synonymous_variant 0.82 pretomanid delamanid clofazimine fbiB 3642707 c.1173C>G synonymous_variant 0.81 pretomanid delamanid clofazimine fbiB 3642710 c.1176G>C synonymous_variant 0.79 pretomanid delamanid clofazimine fbiB 3642711 p.Leu393Val missense_variant 0.79 pretomanid delamanid clofazimine fbiB 3642743 c.1209T>C synonymous_variant 1.0 pretomanid delamanid clofazimine fbiB 3642749 c.1215T>C synonymous_variant 1.0 pretomanid delamanid clofazimine alr 3840989 c.432G>C synonymous_variant 1.0 cycloserine alr 3840994 p.His143Asp missense_variant 1.0 cycloserine alr 3840997 c.424T>C synonymous_variant 1.0 cycloserine alr 3841001 c.420A>G synonymous_variant 1.0 cycloserine alr 3841013 c.408C>G synonymous_variant 0.92 cycloserine alr 3841018 p.Leu135Val missense_variant 1.0 cycloserine alr 3841033 p.Val130Ile missense_variant 1.0 cycloserine alr 3841036 p.Gln129Glu missense_variant 0.92 cycloserine alr 3841037 c.384G>C synonymous_variant 1.0 cycloserine alr 3841055 c.366C>G synonymous_variant 0.92 cycloserine alr 3841079 c.342T>C synonymous_variant 1.0 cycloserine alr 3841088 c.333C>T synonymous_variant 0.92 cycloserine alr 3841100 c.321A>T synonymous_variant 1.0 cycloserine alr 3841106 c.315T>C synonymous_variant 1.0 cycloserine alr 3841112 p.Asp103Ala missense_variant 1.0 cycloserine alr 3841115 c.306T>G synonymous_variant 1.0 cycloserine alr 3841124 c.297G>A synonymous_variant 0.94 cycloserine alr 3841127 c.294A>G synonymous_variant 1.0 cycloserine rpoA 3877494 p.Glu338Asp missense_variant 1.0 rifampicin Uncertain significance rpoA 3877503 c.1005G>C synonymous_variant 1.0 rifampicin rpoA 3877506 p.Gly334Ala missense_variant 0.71 rifampicin rpoA 3877515 c.993G>C synonymous_variant 1.0 rifampicin rpoA 3877557 c.951C>G synonymous_variant 0.72 rifampicin Not assoc w R - Interim rpoA 3877587 c.921A>C synonymous_variant 1.0 rifampicin rpoA 3877613 p.Ile299Val missense_variant 1.0 rifampicin rpoA 3877617 c.891G>C synonymous_variant 0.62 rifampicin rpoA 3877638 c.870T>G synonymous_variant 0.65 rifampicin rpoA 3877656 c.852T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3877668 c.840A>G synonymous_variant 0.35 rifampicin rpoA 3877677 p.Ala277Cys missense_variant 0.57 rifampicin rpoA 3877680 c.828G>C synonymous_variant 0.56 rifampicin Not assoc w R - Interim rpoA 3877685 c.823C>T synonymous_variant 0.57 rifampicin rpoA 3877686 c.822A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3877692 c.816G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3877704 c.804G>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3877731 c.777G>T synonymous_variant 0.65 rifampicin rpoA 3877737 c.771G>C synonymous_variant 0.66 rifampicin rpoA 3877743 c.765T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3877758 c.750G>C synonymous_variant 0.63 rifampicin rpoA 3877764 c.744C>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3877770 c.738A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3877776 c.732T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3877782 c.726T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3877791 c.717C>G synonymous_variant 0.33 rifampicin rpoA 3877815 c.693C>T synonymous_variant 0.71 rifampicin Not assoc w R - Interim rpoA 3877839 c.669G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3877851 c.657C>T synonymous_variant 0.72 rifampicin rpoA 3877857 c.651G>A synonymous_variant 1.0 rifampicin rpoA 3877865 c.643C>T synonymous_variant 0.64 rifampicin rpoA 3877866 c.642G>C synonymous_variant 1.0 rifampicin rpoA 3877872 c.636C>T synonymous_variant 0.61 rifampicin Not assoc w R - Interim rpoA 3877875 c.633T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3877878 c.630G>C synonymous_variant 0.34 rifampicin rpoA 3877887 c.621G>C synonymous_variant 0.67 rifampicin rpoA 3877890 c.618C>T synonymous_variant 0.33 rifampicin rpoA 3877896 c.612G>C synonymous_variant 0.32 rifampicin rpoA 3877900 p.Ser203Thr missense_variant 1.0 rifampicin rpoA 3877905 c.603A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3877908 p.Asn200Ser missense_variant 1.0 rifampicin rpoA 3877920 c.588G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3877962 c.546G>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3877968 c.540C>G synonymous_variant 0.75 rifampicin rpoA 3877989 c.519A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3878001 c.507A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3878022 c.486T>C synonymous_variant 1.0 rifampicin rpoA 3878025 c.483C>T synonymous_variant 0.67 rifampicin rpoA 3878028 c.480G>C synonymous_variant 1.0 rifampicin rpoA 3878031 c.477T>C synonymous_variant 1.0 rifampicin rpoA 3878040 c.468T>C synonymous_variant 0.33 rifampicin Not assoc w R - Interim rpoA 3878043 c.465G>C synonymous_variant 0.66 rifampicin rpoA 3878046 c.462T>G synonymous_variant 0.61 rifampicin rpoA 3878055 c.453A>G synonymous_variant 1.0 rifampicin rpoA 3878058 c.450G>T synonymous_variant 0.33 rifampicin rpoA 3878061 c.447G>C synonymous_variant 1.0 rifampicin rpoA 3878067 c.441C>G synonymous_variant 1.0 rifampicin rpoA 3878070 c.438T>C synonymous_variant 1.0 rifampicin rpoA 3878076 c.432C>T synonymous_variant 1.0 rifampicin rpoA 3878082 c.426T>C synonymous_variant 0.52 rifampicin rpoA 3878094 c.414C>G synonymous_variant 0.55 rifampicin rpoA 3878097 c.411G>A synonymous_variant 0.45 rifampicin rpoA 3878103 c.405A>G synonymous_variant 1.0 rifampicin rpoA 3878106 c.402G>C synonymous_variant 1.0 rifampicin rpoA 3878118 c.390T>C synonymous_variant 1.0 rifampicin rpoA 3878130 c.378C>G synonymous_variant 1.0 rifampicin rpoA 3878141 p.Met123Leu missense_variant 0.42 rifampicin Uncertain significance rpoA 3878143 p.Gly122Asp missense_variant 0.42 rifampicin Uncertain significance rpoA 3878145 c.363C>G synonymous_variant 0.52 rifampicin rpoA 3878157 c.351C>G synonymous_variant 1.0 rifampicin rpoA 3878163 c.345C>T synonymous_variant 0.32 rifampicin Not assoc w R - Interim rpoA 3878166 c.342C>G synonymous_variant 0.67 rifampicin rpoA 3878169 c.339G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3878184 c.324C>T synonymous_variant 0.61 rifampicin Not assoc w R - Interim rpoA 3878187 c.321C>G synonymous_variant 1.0 rifampicin rpoA 3878193 c.315T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3878205 c.303T>G synonymous_variant 0.58 rifampicin Not assoc w R - Interim rpoA 3878217 c.291A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3878226 c.282C>G synonymous_variant 0.42 rifampicin rpoA 3878229 c.279C>G synonymous_variant 0.54 rifampicin rpoA 3878232 c.276G>C synonymous_variant 0.46 rifampicin rpoA 3878247 c.261G>C synonymous_variant 1.0 rifampicin rpoA 3878271 c.237T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3878283 p.Glu75Ala missense_variant 0.38 rifampicin rpoA 3878292 c.216T>C synonymous_variant 0.58 rifampicin Not assoc w R - Interim rpoA 3878298 c.210A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3878304 c.204G>C synonymous_variant 1.0 rifampicin rpoA 3878310 c.198G>C synonymous_variant 0.4 rifampicin rpoA 3878313 c.195G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3878322 c.186A>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3878331 c.177A>C synonymous_variant 1.0 rifampicin rpoA 3878334 c.174T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3878337 c.171T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3878346 c.162T>C synonymous_variant 1.0 rifampicin rpoA 3878364 c.144A>C synonymous_variant 1.0 rifampicin rpoA 3878370 c.138T>C synonymous_variant 0.73 rifampicin rpoA 3878376 c.132G>C synonymous_variant 1.0 rifampicin rpoA 3878384 c.124C>T synonymous_variant 0.69 rifampicin rpoA 3878385 c.123C>G synonymous_variant 1.0 rifampicin rpoA 3878391 c.117T>G synonymous_variant 1.0 rifampicin Not assoc w R - Interim rpoA 3878415 c.93C>T synonymous_variant 1.0 rifampicin rpoA 3878418 c.90C>T synonymous_variant 0.75 rifampicin rpoA 3878442 c.66G>C synonymous_variant 1.0 rifampicin rpoA 3878454 c.54A>G synonymous_variant 1.0 rifampicin rpoA 3878458 p.Asn17Ser missense_variant 0.86 rifampicin rpoA 3878471 p.Val13Leu missense_variant 0.88 rifampicin rpoA 3878472 p.Asp12Glu missense_variant 1.0 rifampicin rpoA 3878484 c.24C>A synonymous_variant 1.0 rifampicin rpoA 3878490 c.18C>A synonymous_variant 1.0 rifampicin rpoA 3878496 c.12A>T synonymous_variant 1.0 rifampicin rpoA 3878698 c.-191A>G upstream_gene_variant 1.0 rifampicin rpoA 3878701 c.-194C>G upstream_gene_variant 0.54 rifampicin rpoA 3878713 c.-206G>C upstream_gene_variant 0.4 rifampicin rpoA 3878716 c.-209C>G upstream_gene_variant 0.6 rifampicin rpoA 3878725 c.-218A>G upstream_gene_variant 1.0 rifampicin rpoA 3878736 c.-229A>G upstream_gene_variant 0.62 rifampicin rpoA 3878737 c.-230G>C upstream_gene_variant 0.62 rifampicin rpoA 3878742 c.-235G>A upstream_gene_variant 1.0 rifampicin rpoA 3878746 c.-239A>G upstream_gene_variant 1.0 rifampicin Uncertain significance rpoA 3878749 c.-242G>T upstream_gene_variant 0.65 rifampicin rpoA 3878764 c.-257A>G upstream_gene_variant 1.0 rifampicin rpoA 3878785 c.-278T>C upstream_gene_variant 1.0 rifampicin rpoA 3878788 c.-281G>C upstream_gene_variant 1.0 rifampicin Uncertain significance rpoA 3878797 c.-290G>C upstream_gene_variant 0.74 rifampicin rpoA 3878803 c.-296G>A upstream_gene_variant 1.0 rifampicin rpoA 3878806 c.-299C>G upstream_gene_variant 1.0 rifampicin rpoA 3878809 c.-302T>C upstream_gene_variant 0.94 rifampicin rpoA 3878824 c.-317G>C upstream_gene_variant 1.0 rifampicin rpoA 3878833 c.-326C>G upstream_gene_variant 1.0 rifampicin rpoA 3878836 c.-331_-329delAAGinsGGC upstream_gene_variant 1.0 rifampicin rpoA 3878842 c.-335G>C upstream_gene_variant 0.44 rifampicin rpoA 3878853 c.-346G>A upstream_gene_variant 1.0 rifampicin rpoA 3878869 c.-362G>C upstream_gene_variant 0.6 rifampicin rpoA 3878878 c.-371T>C upstream_gene_variant 1.0 rifampicin Uncertain significance rpoA 3878881 c.-374C>G upstream_gene_variant 0.64 rifampicin rpoA 3878884 c.-377C>G upstream_gene_variant 0.35 rifampicin rpoA 3878889 c.-382A>G upstream_gene_variant 0.6 rifampicin rpoA 3878894 c.-387A>G upstream_gene_variant 0.62 rifampicin rpoA 3878909 c.-402A>C upstream_gene_variant 1.0 rifampicin rpoA 3878914 c.-407T>C upstream_gene_variant 1.0 rifampicin Uncertain significance rpoA 3878917 c.-410G>A upstream_gene_variant 0.37 rifampicin Uncertain significance rpoA 3878920 c.-413C>T upstream_gene_variant 0.37 rifampicin rpoA 3878923 c.-417_-416delGCinsCG upstream_gene_variant 0.6 rifampicin rpoA 3878935 c.-428C>T upstream_gene_variant 0.39 rifampicin rpoA 3878938 c.-431T>G upstream_gene_variant 0.37 rifampicin rpoA 3878947 c.-440G>C upstream_gene_variant 1.0 rifampicin Uncertain significance rpoA 3878953 c.-446C>T upstream_gene_variant 1.0 rifampicin rpoA 3878956 c.-449G>T upstream_gene_variant 0.52 rifampicin rpoA 3878962 c.-455G>C upstream_gene_variant 1.0 rifampicin rpoA 3878968 c.-461T>C upstream_gene_variant 1.0 rifampicin Uncertain significance rpoA 3878974 c.-469_-467delATCinsGTG upstream_gene_variant 1.0 rifampicin rpoA 3878998 c.-491C>G upstream_gene_variant 1.0 rifampicin Uncertain significance rpoA 3879004 c.-499_-497delAAGinsCGC upstream_gene_variant 1.0 rifampicin rpoA 3879022 c.-515G>C upstream_gene_variant 1.0 rifampicin rpoA 3879037 c.-530G>C upstream_gene_variant 1.0 rifampicin rpoA 3879049 c.-542A>G upstream_gene_variant 0.49 rifampicin rpoA 3879061 c.-554C>T upstream_gene_variant 0.49 rifampicin rpoA 3879079 c.-572A>G upstream_gene_variant 1.0 rifampicin rpoA 3879088 c.-581A>C upstream_gene_variant 1.0 rifampicin rpoA 3879094 c.-587T>C upstream_gene_variant 1.0 rifampicin rpoA 3879117 c.-610C>T upstream_gene_variant 0.71 rifampicin rpoA 3879121 c.-614T>G upstream_gene_variant 1.0 rifampicin rpoA 3879127 c.-620T>C upstream_gene_variant 1.0 rifampicin rpoA 3879145 c.-638G>C upstream_gene_variant 0.77 rifampicin rpoA 3879148 c.-641G>C upstream_gene_variant 0.78 rifampicin rpoA 3879154 c.-647T>C upstream_gene_variant 1.0 rifampicin rpoA 3879160 c.-653A>G upstream_gene_variant 1.0 rifampicin rpoA 3879178 c.-671T>G upstream_gene_variant 1.0 rifampicin rpoA 3879190 c.-683C>G upstream_gene_variant 1.0 rifampicin rpoA 3879202 c.-695T>C upstream_gene_variant 1.0 rifampicin rpoA 3879208 c.-701C>G upstream_gene_variant 0.78 rifampicin rpoA 3879222 c.-715T>C upstream_gene_variant 1.0 rifampicin rpoA 3879226 c.-719G>C upstream_gene_variant 1.0 rifampicin rpoA 3879229 c.-722A>G upstream_gene_variant 1.0 rifampicin rpoA 3879232 c.-725A>G upstream_gene_variant 1.0 rifampicin ddn 3986630 c.-214C>G upstream_gene_variant 0.72 pretomanid delamanid ddn 3986636 c.-208C>G upstream_gene_variant 1.0 pretomanid delamanid ddn 3986648 c.-196C>G upstream_gene_variant 1.0 pretomanid delamanid ddn 3986665 c.-179G>C upstream_gene_variant 1.0 pretomanid delamanid ddn 3986667 c.-177_-176delCTinsAC upstream_gene_variant 1.0 pretomanid delamanid ddn 3986681 c.-163C>G upstream_gene_variant 1.0 pretomanid delamanid ddn 3986690 c.-154C>G upstream_gene_variant 1.0 pretomanid delamanid ddn 3986696 c.-148G>C upstream_gene_variant 1.0 pretomanid delamanid clpC1 4038278 c.2427T>C synonymous_variant 1.0 pyrazinamide clpC1 4038329 p.Glu792Asp missense_variant 0.69 pyrazinamide clpC1 4038338 c.2367C>T synonymous_variant 0.73 pyrazinamide clpC1 4038347 c.2358G>C synonymous_variant 0.78 pyrazinamide clpC1 4038356 c.2349T>C synonymous_variant 1.0 pyrazinamide clpC1 4038359 c.2346A>G synonymous_variant 1.0 pyrazinamide clpC1 4038368 c.2337T>C synonymous_variant 1.0 pyrazinamide clpC1 4038388 c.2317T>C synonymous_variant 1.0 pyrazinamide clpC1 4038398 c.2307G>T synonymous_variant 1.0 pyrazinamide clpC1 4038403 c.2302T>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4038425 c.2280C>A synonymous_variant 0.83 pyrazinamide clpC1 4038444 p.Ala754Lys missense_variant 1.0 pyrazinamide clpC1 4038446 c.2259T>C synonymous_variant 1.0 pyrazinamide clpC1 4038456 p.Val750Glu missense_variant 1.0 pyrazinamide clpC1 4038486 p.Gly740Asn missense_variant 1.0 pyrazinamide clpC1 4038491 c.2214C>T synonymous_variant 0.91 pyrazinamide clpC1 4038502 p.Ile735Val missense_variant 0.85 pyrazinamide clpC1 4038508 c.2197C>T synonymous_variant 0.83 pyrazinamide clpC1 4038518 c.2187G>T synonymous_variant 0.78 pyrazinamide clpC1 4038530 p.Glu725Asp missense_variant 1.0 pyrazinamide clpC1 4038537 p.Thr723Ser missense_variant 0.74 pyrazinamide clpC1 4038539 c.2166G>C synonymous_variant 0.73 pyrazinamide clpC1 4038569 c.2136C>T synonymous_variant 0.75 pyrazinamide clpC1 4038575 c.2130C>G synonymous_variant 0.73 pyrazinamide clpC1 4038596 c.2109A>G synonymous_variant 1.0 pyrazinamide clpC1 4038620 c.2085G>A synonymous_variant 0.7 pyrazinamide clpC1 4038623 c.2082A>G synonymous_variant 1.0 pyrazinamide clpC1 4038653 c.2052C>T synonymous_variant 1.0 pyrazinamide clpC1 4038658 p.Lys683Gln missense_variant 1.0 pyrazinamide clpC1 4038661 p.Ser682Thr missense_variant 1.0 pyrazinamide clpC1 4038662 c.2043T>C synonymous_variant 1.0 pyrazinamide clpC1 4038668 c.2037G>C synonymous_variant 0.7 pyrazinamide clpC1 4038671 c.2034T>C synonymous_variant 1.0 pyrazinamide clpC1 4038677 c.2028G>C synonymous_variant 0.69 pyrazinamide clpC1 4038683 c.2022T>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4038692 c.2013C>G synonymous_variant 0.79 pyrazinamide Not assoc w R - Interim clpC1 4038695 c.2010C>G synonymous_variant 1.0 pyrazinamide clpC1 4038698 c.2007C>T synonymous_variant 0.79 pyrazinamide Not assoc w R - Interim clpC1 4038701 c.2004G>C synonymous_variant 1.0 pyrazinamide clpC1 4038704 c.2001T>C synonymous_variant 1.0 pyrazinamide clpC1 4038713 c.1992T>C synonymous_variant 1.0 pyrazinamide clpC1 4038740 c.1965G>C synonymous_variant 0.78 pyrazinamide clpC1 4038749 c.1956C>T synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4038773 c.1932T>C synonymous_variant 1.0 pyrazinamide clpC1 4038782 c.1923G>T synonymous_variant 1.0 pyrazinamide clpC1 4038790 c.1915C>T synonymous_variant 0.84 pyrazinamide Not assoc w R - Interim clpC1 4038809 c.1896G>A synonymous_variant 0.8 pyrazinamide clpC1 4038812 c.1893T>C synonymous_variant 1.0 pyrazinamide clpC1 4038875 c.1830C>G synonymous_variant 0.74 pyrazinamide clpC1 4038878 c.1827A>G synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4038884 c.1821C>T synonymous_variant 0.74 pyrazinamide clpC1 4038893 c.1812C>T synonymous_variant 0.74 pyrazinamide clpC1 4038908 c.1797C>G synonymous_variant 1.0 pyrazinamide clpC1 4038914 c.1791G>C synonymous_variant 1.0 pyrazinamide clpC1 4038923 c.1782A>G synonymous_variant 1.0 pyrazinamide clpC1 4038953 c.1752A>G synonymous_variant 1.0 pyrazinamide clpC1 4038956 c.1749T>C synonymous_variant 1.0 pyrazinamide clpC1 4038965 c.1740T>C synonymous_variant 1.0 pyrazinamide clpC1 4038971 c.1734T>C synonymous_variant 1.0 pyrazinamide clpC1 4038974 c.1731T>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4038989 c.1716T>C synonymous_variant 1.0 pyrazinamide clpC1 4038997 c.1708T>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4039004 c.1701C>G synonymous_variant 1.0 pyrazinamide clpC1 4039022 c.1683A>G synonymous_variant 1.0 pyrazinamide clpC1 4039025 c.1680C>G synonymous_variant 0.73 pyrazinamide clpC1 4039067 c.1638G>C synonymous_variant 0.8 pyrazinamide clpC1 4039085 c.1620A>G synonymous_variant 0.82 pyrazinamide clpC1 4039097 c.1608G>C synonymous_variant 1.0 pyrazinamide clpC1 4039106 c.1599G>T synonymous_variant 1.0 pyrazinamide clpC1 4039112 c.1593C>A synonymous_variant 1.0 pyrazinamide clpC1 4039119 c.1585_1586delTCinsAG synonymous_variant 0.64 pyrazinamide clpC1 4039121 c.1584T>C synonymous_variant 1.0 pyrazinamide clpC1 4039124 c.1581C>G synonymous_variant 1.0 pyrazinamide clpC1 4039142 c.1563A>G synonymous_variant 1.0 pyrazinamide clpC1 4039145 c.1560G>C synonymous_variant 1.0 pyrazinamide clpC1 4039169 p.Glu512Asp missense_variant 1.0 pyrazinamide clpC1 4039172 c.1533A>G synonymous_variant 1.0 pyrazinamide clpC1 4039178 c.1527G>C synonymous_variant 0.98 pyrazinamide clpC1 4039183 c.1522T>C synonymous_variant 1.0 pyrazinamide clpC1 4039190 c.1515C>G synonymous_variant 0.7 pyrazinamide clpC1 4039193 c.1512C>G synonymous_variant 0.72 pyrazinamide clpC1 4039223 c.1482C>T synonymous_variant 0.67 pyrazinamide clpC1 4039226 c.1479T>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4039238 c.1467C>T synonymous_variant 0.67 pyrazinamide clpC1 4039243 c.1462C>T synonymous_variant 0.66 pyrazinamide clpC1 4039259 c.1446G>A synonymous_variant 0.71 pyrazinamide clpC1 4039262 c.1443C>T synonymous_variant 0.72 pyrazinamide Not assoc w R - Interim clpC1 4039268 c.1437C>T synonymous_variant 0.75 pyrazinamide clpC1 4039274 c.1431G>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4039286 c.1419T>C synonymous_variant 1.0 pyrazinamide clpC1 4039298 c.1407T>C synonymous_variant 1.0 pyrazinamide clpC1 4039304 c.1401G>A synonymous_variant 0.78 pyrazinamide clpC1 4039313 c.1392C>T synonymous_variant 0.76 pyrazinamide clpC1 4039319 p.Ala462Thr missense_variant 1.0 pyrazinamide clpC1 4039322 c.1383T>C synonymous_variant 1.0 pyrazinamide clpC1 4039328 c.1377A>C synonymous_variant 1.0 pyrazinamide clpC1 4039338 p.Thr456Gln missense_variant 1.0 pyrazinamide clpC1 4039361 c.1344C>G synonymous_variant 0.82 pyrazinamide clpC1 4039382 c.1323C>T synonymous_variant 0.84 pyrazinamide Not assoc w R - Interim clpC1 4039391 c.1314T>G synonymous_variant 1.0 pyrazinamide clpC1 4039409 c.1296T>C synonymous_variant 1.0 pyrazinamide clpC1 4039412 c.1293T>A synonymous_variant 1.0 pyrazinamide clpC1 4039415 p.Glu430Asp missense_variant 1.0 pyrazinamide Uncertain significance clpC1 4039430 c.1275T>C synonymous_variant 1.0 pyrazinamide clpC1 4039442 c.1263A>G synonymous_variant 1.0 pyrazinamide clpC1 4039454 c.1251A>G synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4039463 c.1242C>G synonymous_variant 1.0 pyrazinamide clpC1 4039466 c.1239T>C synonymous_variant 1.0 pyrazinamide clpC1 4039469 c.1236T>C synonymous_variant 1.0 pyrazinamide clpC1 4039472 c.1233G>C synonymous_variant 0.62 pyrazinamide clpC1 4039480 c.1225C>A synonymous_variant 0.28 pyrazinamide clpC1 4039481 c.1224T>G synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4039484 c.1221T>G synonymous_variant 1.0 pyrazinamide clpC1 4039508 c.1197G>C synonymous_variant 0.78 pyrazinamide clpC1 4039526 c.1179G>A synonymous_variant 0.76 pyrazinamide clpC1 4039532 c.1173C>T synonymous_variant 0.77 pyrazinamide clpC1 4039553 c.1152C>A synonymous_variant 0.78 pyrazinamide clpC1 4039562 c.1143C>G synonymous_variant 1.0 pyrazinamide clpC1 4039565 c.1140G>C synonymous_variant 1.0 pyrazinamide clpC1 4039576 p.Ala377Ser missense_variant 1.0 pyrazinamide clpC1 4039577 c.1128T>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4039583 c.1122C>T synonymous_variant 0.81 pyrazinamide clpC1 4039601 c.1104G>A synonymous_variant 0.87 pyrazinamide clpC1 4039622 c.1083C>T synonymous_variant 1.0 pyrazinamide clpC1 4039664 c.1041G>C synonymous_variant 0.97 pyrazinamide clpC1 4039670 c.1035G>C synonymous_variant 0.72 pyrazinamide clpC1 4039693 c.1012C>T synonymous_variant 0.58 pyrazinamide clpC1 4039694 c.1011G>C synonymous_variant 0.96 pyrazinamide clpC1 4039724 c.981A>G synonymous_variant 0.95 pyrazinamide clpC1 4039733 c.972G>C synonymous_variant 0.5 pyrazinamide clpC1 4039739 c.966C>G synonymous_variant 0.43 pyrazinamide clpC1 4039742 c.963C>T synonymous_variant 0.42 pyrazinamide clpC1 4039748 c.957G>A synonymous_variant 0.41 pyrazinamide clpC1 4039751 c.954A>G synonymous_variant 1.0 pyrazinamide clpC1 4039757 c.948A>G synonymous_variant 0.69 pyrazinamide clpC1 4039760 c.945T>C synonymous_variant 0.71 pyrazinamide clpC1 4039766 c.939T>C synonymous_variant 1.0 pyrazinamide clpC1 4039769 c.936C>G synonymous_variant 1.0 pyrazinamide clpC1 4039790 c.915C>G synonymous_variant 0.8 pyrazinamide clpC1 4039805 c.900C>G synonymous_variant 1.0 pyrazinamide clpC1 4039817 c.888A>T synonymous_variant 1.0 pyrazinamide clpC1 4039820 c.885T>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4039826 c.879C>G synonymous_variant 1.0 pyrazinamide clpC1 4039831 c.874T>C synonymous_variant 1.0 pyrazinamide clpC1 4039832 c.873C>T synonymous_variant 0.7 pyrazinamide clpC1 4039850 c.855T>C synonymous_variant 1.0 pyrazinamide clpC1 4039865 c.840T>C synonymous_variant 1.0 pyrazinamide clpC1 4039898 c.807C>G synonymous_variant 1.0 pyrazinamide clpC1 4039931 c.774T>C synonymous_variant 1.0 pyrazinamide clpC1 4039937 c.768G>C synonymous_variant 1.0 pyrazinamide clpC1 4039943 c.762G>C synonymous_variant 0.63 pyrazinamide clpC1 4039946 c.759A>C synonymous_variant 1.0 pyrazinamide clpC1 4039949 p.Leu252Phe missense_variant 0.61 pyrazinamide clpC1 4039952 c.753T>C synonymous_variant 1.0 pyrazinamide clpC1 4039955 c.750G>T synonymous_variant 0.64 pyrazinamide clpC1 4039958 c.747G>C synonymous_variant 0.66 pyrazinamide clpC1 4039964 c.741C>T synonymous_variant 0.69 pyrazinamide clpC1 4039991 c.714G>C synonymous_variant 0.31 pyrazinamide clpC1 4040000 c.705C>T synonymous_variant 0.67 pyrazinamide clpC1 4040021 c.684A>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4040024 c.681A>G synonymous_variant 1.0 pyrazinamide clpC1 4040033 c.672G>C synonymous_variant 1.0 pyrazinamide clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 1.0 pyrazinamide clpC1 4040093 c.612C>G synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4040105 c.600C>G synonymous_variant 1.0 pyrazinamide clpC1 4040147 c.558A>G synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4040162 c.543G>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4040165 c.540G>C synonymous_variant 1.0 pyrazinamide clpC1 4040171 c.534C>G synonymous_variant 1.0 pyrazinamide clpC1 4040195 c.510G>T synonymous_variant 0.67 pyrazinamide clpC1 4040200 c.505T>C synonymous_variant 0.55 pyrazinamide clpC1 4040201 c.504C>G synonymous_variant 1.0 pyrazinamide clpC1 4040225 c.480A>C synonymous_variant 1.0 pyrazinamide clpC1 4040228 c.477G>C synonymous_variant 1.0 pyrazinamide clpC1 4040231 c.474C>T synonymous_variant 1.0 pyrazinamide clpC1 4040246 c.459C>G synonymous_variant 1.0 pyrazinamide clpC1 4040249 c.456A>G synonymous_variant 1.0 pyrazinamide clpC1 4040267 c.438A>G synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4040273 c.432T>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4040291 c.414G>C synonymous_variant 1.0 pyrazinamide clpC1 4040309 c.396C>T synonymous_variant 0.89 pyrazinamide clpC1 4040342 c.363C>G synonymous_variant 1.0 pyrazinamide clpC1 4040348 c.357G>C synonymous_variant 0.89 pyrazinamide clpC1 4040354 c.351A>G synonymous_variant 1.0 pyrazinamide clpC1 4040357 c.348T>C synonymous_variant 0.88 pyrazinamide clpC1 4040363 c.342A>C synonymous_variant 1.0 pyrazinamide clpC1 4040369 c.336C>G synonymous_variant 1.0 pyrazinamide clpC1 4040375 c.330G>C synonymous_variant 0.86 pyrazinamide clpC1 4040380 c.325T>C synonymous_variant 1.0 pyrazinamide clpC1 4040387 c.318A>G synonymous_variant 1.0 pyrazinamide clpC1 4040393 c.312G>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4040411 c.294T>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4040419 c.286C>T synonymous_variant 0.7 pyrazinamide clpC1 4040423 c.282A>G synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4040426 c.279T>C synonymous_variant 1.0 pyrazinamide clpC1 4040431 c.274T>C synonymous_variant 1.0 pyrazinamide clpC1 4040444 c.261C>T synonymous_variant 0.31 pyrazinamide clpC1 4040450 c.255A>G synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4040456 c.249C>T synonymous_variant 0.68 pyrazinamide Not assoc w R - Interim clpC1 4040459 c.246C>G synonymous_variant 1.0 pyrazinamide clpC1 4040462 c.243C>T synonymous_variant 0.63 pyrazinamide clpC1 4040465 c.240T>C synonymous_variant 1.0 pyrazinamide clpC1 4040471 c.234T>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4040486 c.219G>C synonymous_variant 0.64 pyrazinamide clpC1 4040495 c.210C>A synonymous_variant 0.64 pyrazinamide clpC1 4040522 c.183T>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4040525 c.180C>T synonymous_variant 0.62 pyrazinamide Not assoc w R - Interim clpC1 4040528 c.177G>C synonymous_variant 1.0 pyrazinamide clpC1 4040531 c.174T>C synonymous_variant 1.0 pyrazinamide clpC1 4040534 c.171A>G synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4040537 c.168G>C synonymous_variant 1.0 pyrazinamide clpC1 4040551 c.154T>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4040561 c.144A>G synonymous_variant 1.0 pyrazinamide clpC1 4040573 c.132T>A synonymous_variant 1.0 pyrazinamide clpC1 4040579 c.126A>G synonymous_variant 0.83 pyrazinamide clpC1 4040582 c.123G>C synonymous_variant 0.94 pyrazinamide Not assoc w R - Interim clpC1 4040588 c.117T>C synonymous_variant 1.0 pyrazinamide clpC1 4040591 c.114C>T synonymous_variant 1.0 pyrazinamide clpC1 4040597 c.108C>T synonymous_variant 1.0 pyrazinamide clpC1 4040600 c.103_105delTTAinsCTG synonymous_variant 1.0 pyrazinamide clpC1 4040603 c.102T>G synonymous_variant 1.0 pyrazinamide clpC1 4040606 c.99T>C synonymous_variant 1.0 pyrazinamide clpC1 4040627 c.78C>T synonymous_variant 0.9 pyrazinamide clpC1 4040654 c.51G>A synonymous_variant 1.0 pyrazinamide clpC1 4040657 c.48T>G synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim clpC1 4040662 c.43C>T synonymous_variant 0.91 pyrazinamide Not assoc w R - Interim clpC1 4040669 c.36C>G synonymous_variant 0.91 pyrazinamide clpC1 4040695 c.10C>A synonymous_variant 1.0 pyrazinamide clpC1 4040711 c.-7G>A upstream_gene_variant 1.0 pyrazinamide panD 4043867 p.Gly139Arg missense_variant 1.0 pyrazinamide Uncertain significance panD 4044096 c.186C>T synonymous_variant 0.54 pyrazinamide panD 4044120 c.162A>G synonymous_variant 1.0 pyrazinamide panD 4044123 c.159T>C synonymous_variant 1.0 pyrazinamide panD 4044126 c.156T>C synonymous_variant 1.0 pyrazinamide panD 4044138 c.144T>C synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim panD 4044150 c.132A>G synonymous_variant 1.0 pyrazinamide panD 4044156 c.126A>G synonymous_variant 0.74 pyrazinamide Not assoc w R - Interim panD 4044159 c.123C>T synonymous_variant 0.77 pyrazinamide panD 4044162 c.120A>G synonymous_variant 0.8 pyrazinamide panD 4044165 c.117G>A synonymous_variant 1.0 pyrazinamide panD 4044177 c.105C>G synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim panD 4044180 c.102C>T synonymous_variant 0.89 pyrazinamide panD 4044188 c.94T>C synonymous_variant 1.0 pyrazinamide panD 4044195 c.87T>C synonymous_variant 1.0 pyrazinamide panD 4044225 c.57C>T synonymous_variant 0.9 pyrazinamide panD 4044231 p.Cys17Gln missense_variant 1.0 pyrazinamide panD 4044237 c.45G>C synonymous_variant 1.0 pyrazinamide panD 4044264 c.18G>C synonymous_variant 0.84 pyrazinamide panD 4044719 c.-438G>A upstream_gene_variant 0.7 pyrazinamide panD 4044722 c.-441G>A upstream_gene_variant 0.7 pyrazinamide panD 4044737 c.-456T>C upstream_gene_variant 1.0 pyrazinamide panD 4044749 c.-468G>A upstream_gene_variant 0.47 pyrazinamide panD 4044752 c.-471T>C upstream_gene_variant 1.0 pyrazinamide panD 4044779 c.-500_-498delCTAinsTGC upstream_gene_variant 1.0 pyrazinamide panD 4044788 c.-507G>C upstream_gene_variant 1.0 pyrazinamide panD 4044791 c.-510G>C upstream_gene_variant 1.0 pyrazinamide panD 4044800 c.-519C>G upstream_gene_variant 0.57 pyrazinamide panD 4044812 c.-531A>C upstream_gene_variant 0.81 pyrazinamide panD 4044818 c.-538_-537delCGinsAC upstream_gene_variant 1.0 pyrazinamide panD 4044823 c.-542G>C upstream_gene_variant 0.82 pyrazinamide panD 4044844 c.-563T>C upstream_gene_variant 1.0 pyrazinamide panD 4044953 c.-674_-672delCCGinsATT upstream_gene_variant 0.64 pyrazinamide panD 4044956 c.-675C>G upstream_gene_variant 0.67 pyrazinamide panD 4044962 c.-681C>G upstream_gene_variant 0.6 pyrazinamide panD 4044965 c.-684T>C upstream_gene_variant 0.67 pyrazinamide panD 4044977 c.-696T>C upstream_gene_variant 0.59 pyrazinamide panD 4044989 c.-708T>C upstream_gene_variant 0.37 pyrazinamide panD 4045000 c.-719A>T upstream_gene_variant 1.0 pyrazinamide panD 4045001 c.-720G>C upstream_gene_variant 1.0 pyrazinamide panD 4045022 c.-742_-741delTCinsCG upstream_gene_variant 1.0 pyrazinamide panD 4045028 c.-747C>G upstream_gene_variant 1.0 pyrazinamide panD 4045034 c.-753A>G upstream_gene_variant 1.0 pyrazinamide panD 4045052 c.-771G>C upstream_gene_variant 0.6 pyrazinamide panD 4045055 c.-774T>G upstream_gene_variant 0.39 pyrazinamide panD 4045063 c.-782T>C upstream_gene_variant 0.57 pyrazinamide panD 4045067 c.-786C>G upstream_gene_variant 1.0 pyrazinamide panD 4045070 c.-789C>T upstream_gene_variant 1.0 pyrazinamide panD 4045073 c.-792C>G upstream_gene_variant 0.64 pyrazinamide panD 4045076 c.-795A>C upstream_gene_variant 1.0 pyrazinamide glpK 4138535 c.1221T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138550 c.1206C>T synonymous_variant 0.78 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138568 c.1188A>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138574 c.1182G>T synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138580 c.1176C>T synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138583 c.1173G>C synonymous_variant 0.78 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138596 p.Phe387Tyr missense_variant 0.81 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138598 c.1158G>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138606 c.1150T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138631 c.1125C>G synonymous_variant 0.78 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138640 c.1116C>T synonymous_variant 0.74 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138643 c.1113A>G synonymous_variant 0.97 levofloxacin moxifloxacin isoniazid Not assoc w R - Interim streptomycin rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim glpK 4138646 c.1110G>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138670 c.1086G>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138681 p.Met359Val missense_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138682 c.1074C>G synonymous_variant 0.61 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138695 p.Pro354His missense_variant 0.33 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138702 p.Gln352Glu missense_variant 0.56 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138703 c.1053C>T synonymous_variant 0.56 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138706 c.1050C>G synonymous_variant 0.56 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138714 p.Ala348Ser missense_variant 0.54 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138715 c.1041G>A synonymous_variant 0.54 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138718 c.1038T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138721 c.1035G>A synonymous_variant 0.38 levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim isoniazid Not assoc w R - Interim streptomycin rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim glpK 4138724 c.1032A>G synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138730 c.1026C>G synonymous_variant 0.36 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138751 c.1005T>C synonymous_variant 0.57 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138757 c.999A>G synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138763 c.993G>A synonymous_variant 0.41 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138769 c.987G>C synonymous_variant 0.42 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138774 p.Ser328Ala missense_variant 0.42 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138778 c.978C>G synonymous_variant 0.43 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4138796 c.960A>G synonymous_variant 0.53 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139120 p.Asp212Glu missense_variant 0.5 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139132 c.624A>C synonymous_variant 1.0 levofloxacin Not assoc w R - Interim moxifloxacin Not assoc w R - Interim isoniazid Not assoc w R - Interim streptomycin Not assoc w R - Interim rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim glpK 4139143 c.613T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139150 c.606G>C synonymous_variant 0.65 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139156 c.600C>G synonymous_variant 0.64 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139165 c.591A>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139168 c.588T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139176 p.Val194Ile missense_variant 0.65 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139177 c.579T>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139183 c.573T>G synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139186 c.570G>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid Not assoc w R - Interim streptomycin Not assoc w R - Interim rifampicin Not assoc w R - Interim ethambutol Not assoc w R - Interim glpK 4139215 c.541T>C synonymous_variant 0.86 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139223 p.Thr178Ser missense_variant 0.9 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139230 p.Pro176Ala missense_variant 0.83 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139231 c.525A>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139243 c.513A>G synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139561 c.195G>A synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139575 p.Val61Ile missense_variant 0.73 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139579 c.177C>T synonymous_variant 0.73 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139588 c.168G>C synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139597 c.159C>G synonymous_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139601 p.Arg52Gln missense_variant 1.0 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139609 p.Ile49Val missense_variant 0.71 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139633 c.123C>T synonymous_variant 0.71 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139651 p.His35Gly missense_variant 0.38 levofloxacin moxifloxacin isoniazid streptomycin rifampicin ethambutol glpK 4139657 c.99T>C synonymous_variant 0.58 levofloxacin moxifloxacin isoniazid Not assoc w R - Interim streptomycin rifampicin Not assoc w R - Interim ethambutol embC 4239111 c.-752G>A upstream_gene_variant 1.0 ethambutol embC 4239141 c.-722G>A upstream_gene_variant 1.0 ethambutol Uncertain significance embC 4239146 c.-717A>G upstream_gene_variant 1.0 ethambutol Uncertain significance embC 4239147 c.-716T>C upstream_gene_variant 1.0 ethambutol embC 4239161 c.-702A>G upstream_gene_variant 1.0 ethambutol embC 4239173 c.-690T>C upstream_gene_variant 1.0 ethambutol embC 4239176 c.-687C>G upstream_gene_variant 1.0 ethambutol embC 4239336 c.-527T>C upstream_gene_variant 1.0 ethambutol embC 4240471 c.609C>T synonymous_variant 1.0 ethambutol embC 4240475 p.Ala205Ser missense_variant 1.0 ethambutol Uncertain significance embC 4240489 c.627A>C synonymous_variant 1.0 ethambutol embC 4240490 p.Pro210Ala missense_variant 1.0 ethambutol Uncertain significance embC 4240495 c.633T>C synonymous_variant 1.0 ethambutol embC 4240512 p.Ser217Thr missense_variant 1.0 ethambutol embC 4240516 c.654G>C synonymous_variant 1.0 ethambutol embC 4240519 c.657T>C synonymous_variant 1.0 ethambutol embC 4240525 c.663C>G synonymous_variant 0.89 ethambutol embC 4240657 c.795G>C synonymous_variant 0.65 ethambutol embC 4240660 c.798C>G synonymous_variant 0.59 ethambutol embC 4240669 c.807G>C synonymous_variant 0.33 ethambutol embC 4240671 p.Thr270Ile missense_variant 1.0 ethambutol Not assoc w R embC 4240678 c.816T>C synonymous_variant 1.0 ethambutol embC 4240681 c.819G>C synonymous_variant 0.61 ethambutol embC 4240685 p.Thr275Ala missense_variant 1.0 ethambutol embC 4240690 c.828G>C synonymous_variant 0.58 ethambutol embC 4240693 c.831T>C synonymous_variant 1.0 ethambutol embC 4240698 p.Ala279Gly missense_variant 0.58 ethambutol embC 4240726 c.864G>C synonymous_variant 0.98 ethambutol Not assoc w R - Interim embC 4240729 c.867C>G synonymous_variant 0.52 ethambutol embC 4240747 c.885C>T synonymous_variant 0.42 ethambutol Not assoc w R - Interim embC 4240759 c.897C>G synonymous_variant 0.41 ethambutol embC 4240765 c.903C>G synonymous_variant 0.43 ethambutol embC 4240780 c.918T>C synonymous_variant 0.61 ethambutol embC 4240783 c.921G>C synonymous_variant 1.0 ethambutol embC 4240789 c.927T>C synonymous_variant 1.0 ethambutol embC 4240795 c.933C>G synonymous_variant 0.36 ethambutol embC 4240819 c.957A>G synonymous_variant 1.0 ethambutol embC 4240828 c.966G>C synonymous_variant 0.62 ethambutol embC 4240831 c.969T>G synonymous_variant 1.0 ethambutol embC 4240867 c.1005T>C synonymous_variant 1.0 ethambutol embC 4240870 c.1008T>C synonymous_variant 1.0 ethambutol embC 4240873 c.1011C>G synonymous_variant 1.0 ethambutol embC 4241038 c.1176G>C synonymous_variant 1.0 ethambutol embC 4241044 c.1182C>T synonymous_variant 0.56 ethambutol embC 4241047 c.1185C>G synonymous_variant 1.0 ethambutol embC 4241050 c.1188T>G synonymous_variant 1.0 ethambutol embC 4241053 c.1191G>C synonymous_variant 1.0 ethambutol embC 4241059 c.1197G>A synonymous_variant 0.52 ethambutol embC 4241071 c.1209C>G synonymous_variant 0.53 ethambutol embC 4241086 c.1224G>C synonymous_variant 0.59 ethambutol embC 4241089 c.1227C>G synonymous_variant 0.38 ethambutol embC 4241095 c.1233C>T synonymous_variant 1.0 ethambutol embC 4241101 c.1239G>C synonymous_variant 0.67 ethambutol embC 4241107 c.1245G>C synonymous_variant 0.35 ethambutol embC 4241121 p.Ser420Asn missense_variant 0.69 ethambutol embC 4241137 c.1275G>C synonymous_variant 0.67 ethambutol embC 4241146 c.1284C>G synonymous_variant 1.0 ethambutol embC 4241153 p.Ile431Val missense_variant 0.69 ethambutol Uncertain significance embC 4241158 c.1296T>G synonymous_variant 1.0 ethambutol Not assoc w R - Interim embC 4241161 c.1299C>G synonymous_variant 1.0 ethambutol Not assoc w R - Interim embC 4241162 c.1300T>C synonymous_variant 1.0 ethambutol embC 4241185 c.1323G>C synonymous_variant 0.71 ethambutol embC 4241188 c.1326C>T synonymous_variant 0.69 ethambutol embC 4241194 c.1332C>G synonymous_variant 0.64 ethambutol embC 4241197 c.1335G>C synonymous_variant 0.64 ethambutol embC 4241200 c.1338C>T synonymous_variant 0.64 ethambutol embC 4241203 c.1341T>C synonymous_variant 1.0 ethambutol embC 4241206 c.1344G>C synonymous_variant 1.0 ethambutol Not assoc w R - Interim embC 4241453 p.Ile531Val missense_variant 0.67 ethambutol embA 4242739 c.-494C>G upstream_gene_variant 1.0 ethambutol embA 4242742 c.-491C>G upstream_gene_variant 0.73 ethambutol embA 4242748 c.-485A>G upstream_gene_variant 1.0 ethambutol embA 4242754 c.-479G>C upstream_gene_variant 0.78 ethambutol embC 4242764 p.Val968Leu missense_variant 1.0 ethambutol embC 4242779 p.Asn973Asp missense_variant 1.0 ethambutol embA 4245056 c.1824C>G synonymous_variant 0.83 ethambutol embA 4245060 c.1828T>C synonymous_variant 1.0 ethambutol embA 4245063 c.1831C>T synonymous_variant 0.75 ethambutol embA 4245078 p.Trp616Val missense_variant 0.7 ethambutol embA 4245083 c.1851A>C synonymous_variant 1.0 ethambutol embA 4245089 c.1857G>C synonymous_variant 1.0 ethambutol embA 4245093 p.Ile621Val missense_variant 0.73 ethambutol Uncertain significance embA 4245101 c.1869G>C synonymous_variant 1.0 ethambutol embA 4245125 c.1893G>A synonymous_variant 0.69 ethambutol Not assoc w R - Interim embA 4245137 c.1905T>C synonymous_variant 1.0 ethambutol embA 4245146 c.1914G>A synonymous_variant 0.46 ethambutol embA 4245149 c.1917C>G synonymous_variant 1.0 ethambutol embA 4245153 p.Ile641Val missense_variant 0.61 ethambutol embA 4245182 c.1950T>C synonymous_variant 1.0 ethambutol embA 4245189 c.1957C>T synonymous_variant 1.0 ethambutol embA 4245198 p.Leu656Ile missense_variant 1.0 ethambutol embA 4245207 c.1975T>C synonymous_variant 1.0 ethambutol embA 4245215 c.1983A>C synonymous_variant 1.0 ethambutol embA 4245222 p.Tyr664Gln missense_variant 1.0 ethambutol embA 4245248 c.2016G>C synonymous_variant 0.62 ethambutol embA 4245257 c.2025A>G synonymous_variant 1.0 ethambutol embA 4245446 c.2214C>T synonymous_variant 1.0 ethambutol embA 4245453 p.Ala741Thr missense_variant 1.0 ethambutol embA 4245461 c.2229C>A synonymous_variant 1.0 ethambutol embA 4245471 p.Ala747Leu missense_variant 1.0 ethambutol embA 4245477 p.Met749Leu missense_variant 1.0 ethambutol embA 4245497 c.2265C>G synonymous_variant 1.0 ethambutol embA 4245501 p.Ala757Thr missense_variant 1.0 ethambutol embA 4245506 c.2274C>T synonymous_variant 1.0 ethambutol embB 4245518 c.-996A>T upstream_gene_variant 1.0 ethambutol embA 4245524 c.2292G>C synonymous_variant 1.0 ethambutol Not assoc w R - Interim embB 4245530 c.-984T>C upstream_gene_variant 1.0 ethambutol embA 4245531 p.Ile767Val missense_variant 1.0 ethambutol embA 4245535 p.Ser768Asn missense_variant 1.0 ethambutol embB 4245539 c.-975C>G upstream_gene_variant 1.0 ethambutol embB 4245725 c.-789A>G upstream_gene_variant 1.0 ethambutol embB 4245726 c.-788T>C upstream_gene_variant 1.0 ethambutol embB 4245737 c.-777A>C upstream_gene_variant 1.0 ethambutol embB 4245740 c.-774T>C upstream_gene_variant 1.0 ethambutol embA 4245785 c.2553G>C synonymous_variant 1.0 ethambutol Not assoc w R - Interim embB 4245845 c.-669T>C upstream_gene_variant 1.0 ethambutol embB 4245851 c.-663G>C upstream_gene_variant 0.86 ethambutol embB 4245860 c.-654C>G upstream_gene_variant 0.8 ethambutol embA 4245885 p.Asp885Thr missense_variant 1.0 ethambutol embA 4245892 p.Ile887Thr missense_variant 1.0 ethambutol Uncertain significance embA 4245899 c.2667C>G synonymous_variant 1.0 ethambutol Not assoc w R - Interim embB 4245902 c.-612G>A upstream_gene_variant 0.7 ethambutol embB 4245911 c.-603A>G upstream_gene_variant 0.7 ethambutol embB 4245917 c.-597G>A upstream_gene_variant 0.7 ethambutol embB 4245980 c.-534C>T upstream_gene_variant 0.8 ethambutol embA 4245987 p.Gln919Glu missense_variant 0.82 ethambutol embB 4245992 c.-522C>G upstream_gene_variant 1.0 ethambutol embB 4246010 c.-504G>C upstream_gene_variant 1.0 ethambutol embB 4246013 c.-501T>C upstream_gene_variant 1.0 ethambutol embA 4246020 p.Ala930Thr missense_variant 0.93 ethambutol embA 4246041 p.Asp937Asn missense_variant 1.0 ethambutol embB 4246049 c.-465G>C upstream_gene_variant 0.88 ethambutol embA 4246055 c.2823T>C synonymous_variant 1.0 ethambutol Not assoc w R - Interim embB 4246058 c.-456C>G upstream_gene_variant 0.88 ethambutol embB 4246064 c.-450T>C upstream_gene_variant 1.0 ethambutol embB 4246196 c.-318C>G upstream_gene_variant 1.0 ethambutol embB 4246205 c.-309A>G upstream_gene_variant 1.0 ethambutol embB 4246211 c.-303T>C upstream_gene_variant 1.0 ethambutol embB 4246217 c.-297G>A upstream_gene_variant 1.0 ethambutol embA 4246220 c.2988T>C synonymous_variant 1.0 ethambutol Not assoc w R - Interim embB 4246223 c.-291C>T upstream_gene_variant 1.0 ethambutol embA 4246227 p.Ile999Val missense_variant 1.0 ethambutol embA 4246235 c.3003G>A synonymous_variant 1.0 ethambutol Not assoc w R - Interim embA 4246242 p.Gln1004Gly missense_variant 1.0 ethambutol embB 4246250 c.-264G>C upstream_gene_variant 0.64 ethambutol embB 4246256 c.-258G>T upstream_gene_variant 0.64 ethambutol embB 4247407 c.894G>C synonymous_variant 1.0 ethambutol embB 4247425 c.912G>C synonymous_variant 0.96 ethambutol embB 4247437 c.924A>G synonymous_variant 0.96 ethambutol Not assoc w R - Interim embB 4247440 c.927C>G synonymous_variant 0.36 ethambutol embB 4247446 c.933C>T synonymous_variant 0.38 ethambutol embB 4247452 c.939C>G synonymous_variant 0.62 ethambutol embB 4247470 c.957T>C synonymous_variant 0.98 ethambutol embB 4247497 c.984T>C synonymous_variant 1.0 ethambutol embB 4247500 c.987C>G synonymous_variant 0.83 ethambutol embB 4247506 c.993C>G synonymous_variant 0.84 ethambutol embB 4247512 c.999T>C synonymous_variant 1.0 ethambutol embB 4247521 c.1008G>A synonymous_variant 0.79 ethambutol Not assoc w R - Interim embB 4247522 c.1009C>T synonymous_variant 0.79 ethambutol embB 4247527 c.1014G>C synonymous_variant 0.78 ethambutol embB 4247539 c.1026T>C synonymous_variant 1.0 ethambutol embB 4247550 p.Ala346Asp missense_variant 0.83 ethambutol embB 4247554 c.1041T>C synonymous_variant 1.0 ethambutol embB 4247566 c.1053C>G synonymous_variant 1.0 ethambutol embB 4247572 c.1059A>C synonymous_variant 1.0 ethambutol embB 4247590 c.1077A>G synonymous_variant 1.0 ethambutol Not assoc w R - Interim embB 4247629 c.1116C>G synonymous_variant 0.92 ethambutol embB 4247632 c.1119C>G synonymous_variant 0.9 ethambutol embB 4247677 c.1164C>G synonymous_variant 0.78 ethambutol Not assoc w R - Interim embB 4247684 c.1171T>C synonymous_variant 0.78 ethambutol embB 4247722 c.1209G>T synonymous_variant 1.0 ethambutol embB 4247725 c.1212G>C synonymous_variant 1.0 ethambutol embB 4247729 p.Gly406Pro missense_variant 1.0 ethambutol embB 4247753 p.Val414Ile missense_variant 0.68 ethambutol Uncertain significance embB 4247761 c.1248T>C synonymous_variant 1.0 ethambutol embB 4247773 c.1260G>A synonymous_variant 1.0 ethambutol embB 4247776 c.1263G>T synonymous_variant 1.0 ethambutol embB 4247818 c.1305C>G synonymous_variant 0.38 ethambutol embB 4247819 p.Val436Ile missense_variant 1.0 ethambutol Uncertain significance embB 4247827 c.1314C>G synonymous_variant 0.35 ethambutol embB 4247830 c.1317A>G synonymous_variant 1.0 ethambutol Not assoc w R - Interim embB 4247842 c.1329T>C synonymous_variant 0.35 ethambutol embB 4247851 c.1338C>G synonymous_variant 0.38 ethambutol embB 4247857 c.1344C>A synonymous_variant 0.38 ethambutol embB 4247869 c.1356G>A synonymous_variant 0.4 ethambutol Not assoc w R - Interim embB 4247887 c.1374C>T synonymous_variant 1.0 ethambutol Not assoc w R - Interim embB 4247893 c.1380C>T synonymous_variant 0.67 ethambutol embB 4247899 p.Met462Ile missense_variant 1.0 ethambutol embB 4247905 c.1392G>C synonymous_variant 1.0 ethambutol Not assoc w R - Interim embB 4247909 c.1396T>C synonymous_variant 1.0 ethambutol embB 4247932 c.1419C>G synonymous_variant 1.0 ethambutol embB 4247940 p.Leu476Trp missense_variant 1.0 ethambutol embB 4247945 c.1432T>C synonymous_variant 1.0 ethambutol embB 4247951 p.Ser480Ala missense_variant 1.0 ethambutol embB 4247956 c.1443G>C synonymous_variant 0.53 ethambutol Not assoc w R - Interim embB 4247983 c.1470G>C synonymous_variant 0.62 ethambutol embB 4248007 c.1494C>A synonymous_variant 1.0 ethambutol embB 4248035 p.Val508Ile missense_variant 1.0 ethambutol embB 4248041 p.Ala510Thr missense_variant 1.0 ethambutol Uncertain significance embB 4248044 p.Lys511Ala missense_variant 1.0 ethambutol embB 4248055 c.1542G>C synonymous_variant 0.77 ethambutol embB 4248064 c.1551G>C synonymous_variant 0.77 ethambutol Not assoc w R - Interim embB 4248070 c.1557T>C synonymous_variant 1.0 ethambutol embB 4248085 c.1572T>C synonymous_variant 1.0 ethambutol embB 4248097 c.1584C>G synonymous_variant 1.0 ethambutol embB 4248130 c.1617G>C synonymous_variant 1.0 ethambutol embB 4248139 c.1626C>G synonymous_variant 1.0 ethambutol embB 4248142 c.1629T>C synonymous_variant 1.0 ethambutol embB 4248143 c.1630T>C synonymous_variant 1.0 ethambutol embB 4248157 c.1644A>G synonymous_variant 1.0 ethambutol Not assoc w R - Interim embB 4248161 c.1648C>T synonymous_variant 0.67 ethambutol Not assoc w R - Interim embB 4248169 c.1656C>G synonymous_variant 0.67 ethambutol embB 4248190 c.1677G>C synonymous_variant 0.76 ethambutol Not assoc w R - Interim embB 4248200 p.Ile563Val missense_variant 1.0 ethambutol embB 4248206 p.Ser565Gly missense_variant 1.0 ethambutol Uncertain significance embB 4248211 c.1698G>A synonymous_variant 0.79 ethambutol embB 4248220 c.1707A>C synonymous_variant 1.0 ethambutol embB 4248241 c.1728C>T synonymous_variant 0.73 ethambutol embB 4248277 c.1764G>C synonymous_variant 0.8 ethambutol embB 4248298 c.1785C>T synonymous_variant 0.72 ethambutol embB 4248304 c.1791G>C synonymous_variant 1.0 ethambutol embB 4248316 c.1803C>G synonymous_variant 0.65 ethambutol embB 4248319 c.1806A>G synonymous_variant 1.0 ethambutol embB 4248322 c.1809G>C synonymous_variant 0.66 ethambutol embB 4248343 c.1830G>C synonymous_variant 0.4 ethambutol embB 4248350 c.1837_1839delTTGinsCTC synonymous_variant 1.0 ethambutol embB 4248355 c.1842A>G synonymous_variant 0.62 ethambutol embB 4248358 c.1845C>G synonymous_variant 1.0 ethambutol embB 4248361 c.1848A>C synonymous_variant 1.0 ethambutol embB 4248368 c.1855C>T synonymous_variant 0.39 ethambutol embB 4248373 c.1860C>G synonymous_variant 1.0 ethambutol embB 4248382 c.1869C>G synonymous_variant 1.0 ethambutol embB 4248386 c.1873C>A synonymous_variant 0.56 ethambutol embB 4248401 p.Ala630Ser missense_variant 0.4 ethambutol embB 4248407 p.Leu632Val missense_variant 1.0 ethambutol embB 4248410 p.Phe633Leu missense_variant 1.0 ethambutol embB 4248425 c.1912T>C synonymous_variant 1.0 ethambutol Not assoc w R - Interim embB 4248430 c.1917T>C synonymous_variant 0.57 ethambutol embB 4248432 p.Trp640Phe missense_variant 1.0 ethambutol embB 4248457 c.1944T>C synonymous_variant 0.62 ethambutol embB 4249417 c.2904A>G synonymous_variant 0.91 ethambutol embB 4249423 p.Asp970Glu missense_variant 0.91 ethambutol Uncertain significance embB 4249424 p.Leu971Met missense_variant 0.91 ethambutol embB 4249429 c.2916C>T synonymous_variant 0.91 ethambutol embB 4249432 c.2919A>G synonymous_variant 0.91 ethambutol embB 4249469 p.Leu986Met missense_variant 1.0 ethambutol embB 4249486 c.2973T>G synonymous_variant 1.0 ethambutol embB 4249498 c.2985G>C synonymous_variant 1.0 ethambutol embB 4249521 p.Ala1003Val missense_variant 1.0 ethambutol embB 4249525 c.3012T>C synonymous_variant 1.0 ethambutol Not assoc w R - Interim aftB 4268081 c.756A>G synonymous_variant 1.0 ethambutol aftB 4268105 c.732T>C synonymous_variant 1.0 ethambutol aftB 4268123 p.Ser238Gly missense_variant 1.0 ethambutol aftB 4268126 c.711G>C synonymous_variant 0.69 ethambutol aftB 4268129 c.708T>G synonymous_variant 1.0 ethambutol aftB 4268132 c.705G>C synonymous_variant 0.59 ethambutol aftB 4268138 c.699A>G synonymous_variant 1.0 ethambutol aftB 4268144 c.693T>C synonymous_variant 1.0 ethambutol aftB 4269006 c.-170T>C upstream_gene_variant 1.0 ethambutol aftB 4269012 c.-176G>C upstream_gene_variant 1.0 ethambutol aftB 4269033 c.-197T>C upstream_gene_variant 1.0 ethambutol aftB 4269036 c.-200C>G upstream_gene_variant 0.82 ethambutol aftB 4269042 c.-206G>C upstream_gene_variant 1.0 ethambutol aftB 4269201 c.-365A>G upstream_gene_variant 1.0 ethambutol aftB 4269255 c.-419C>T upstream_gene_variant 0.79 ethambutol aftB 4269261 c.-425G>A upstream_gene_variant 0.86 ethambutol aftB 4269264 c.-428C>T upstream_gene_variant 0.86 ethambutol ubiA 4269314 p.Lys174Gln missense_variant 1.0 ethambutol ubiA 4269327 p.Lys169Asp missense_variant 0.85 ethambutol ubiA 4269337 p.Val166Ala missense_variant 0.82 ethambutol aftB 4269342 c.-506G>T upstream_gene_variant 1.0 ethambutol ubiA 4269357 p.Ile159Leu missense_variant 1.0 ethambutol ubiA 4269387 p.Glu149Asp missense_variant 1.0 ethambutol Not assoc w R