EBG00000313339 - n.635_649delTTCCTCTCCGGAGGA
Drug resistance types
47 Sensitive
6 RR-TB
75 HR-TB
17 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
72 Other
lineage Counts
| lineage | Count |
|---|---|
| 88 | |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage4.9 | 22 |
| lineage4.3.3 | 4 |
| lineage4 | 40 |
| lineage3.1 | 2 |
| lineage2.2.1 | 16 |
| lineage2 | 3 |
| lineage4.1.1.3 | 2 |
| lineage4.3.4.1 | 1 |
| lineage4.2.1 | 2 |
| lineage2.2.1.1 | 1 |
| lineage4.5 | 1 |
| lineage4.2;La1.7 | 1 |
| lineage6.3;lineage4.9;lineage2.1 | 1 |
| lineage9;lineage3.1 | 1 |
| lineage4.8 | 2 |
| lineage2.2.1;La3 | 1 |
| lineage4.1.1 | 2 |
| lineage4.9;lineage4.6.3 | 1 |
| lineage6.3;lineage2.2.1 | 1 |
| lineage3;lineage2.2.1 | 1 |
| lineage4.1.3;lineage1.1.2 | 1 |
| lineage3 | 7 |
| lineage4.8;La3 | 1 |
| lineage4.4.1.1 | 3 |
| lineage4.2.2.2 | 1 |
| lineage4.1.2.1 | 3 |
| lineage4.3.4.2.1 | 3 |
| lineage1.1.2 | 1 |
| La2 | 1 |
| lineage4.1.3 | 2 |
| La1.8.1 | 1 |
| lineage3.1.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage2.2.2 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage6 | 1 |
| lineage4.6.2.2 | 1 |
| lineage6.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 226 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9787197 | Other | None | ERR987722 | HR-TB | None | SRR1172234 | Other | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR1169194 | Other | None | SRR1172310 | HR-TB | None | SRR1172817 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1172951 | Other | None | SRR1172857 | MDR-TB | None | SRR1173166 | Other | lineage4.9 | None | SRR1173153 | HR-TB | None | SRR1173118 | Other | None | SRR1173363 | HR-TB | None | SRR1173310 | MDR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173400 | Other | None | SRR1173484 | Other | lineage4 | None | SRR1173384 | Other | lineage4 | None | SRR1173629 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1184294 | HR-TB | None | SRR1174897 | HR-TB | None | SRR1175074 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR1196768 | MDR-TB | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196677 | HR-TB | lineage2 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR13837707 | Other | lineage4.9 | None | SRR16156832 | RR-TB | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR15368973 | Other | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR19304036 | HR-TB | None | SRR19303884 | HR-TB | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR20969677 | HR-TB | lineage2 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR25827682 | Other | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | ERR11081257 | Other | lineage4.8 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR26937071 | MDR-TB | lineage2.2.1;La3 | None | ERR176793 | Other | lineage4.1.1 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3675221 | HR-TB | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675465 | HR-TB | None | ERR4815310 | Other | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675311 | Other | None | SRR3675236 | HR-TB | None | SRR3675283 | Sensitive | lineage4.9 | None | ERR4815515 | Sensitive | lineage4.1.3;lineage1.1.2 | None | SRR3675292 | Sensitive | lineage4 | None | ERR4815550 | Other | lineage4 | None | ERR4817511 | Other | lineage3 | None | ERR4815079 | RR-TB | lineage3 | None | ERR176740 | HR-TB | None | ERR4815752 | Other | lineage4.9 | None | ERR176751 | HR-TB | None | SRR3675542 | Other | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR3675572 | Other | None | ERR2027263 | Other | lineage4 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR212121 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4817434 | Other | lineage3 | None | ERR4816868 | Other | lineage4.4.1.1 | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR7496472 | Other | None | ERR234659 | HR-TB | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR2513438 | Sensitive | lineage4.1.2.1 | None | ERR4819192 | Other | lineage3 | None | SRR5007188 | Other | lineage4 | None | ERR4820723 | RR-TB | lineage4.4.1.1 | None | SRR5341302 | HR-TB | None | ERR2514692 | Other | None | SRR5341333 | HR-TB | None | ERR4819876 | HR-TB | lineage4.3.4.2.1 | None | SRR5341470 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6046397 | Other | None | SRR6045327 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046225 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046897 | Sensitive | lineage4 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046863 | Sensitive | lineage1.1.2 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6485062 | Other | lineage2.2.1 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | SRR6789626 | Other | None | ERR4831638 | Sensitive | None | SRR6785227 | Other | lineage2.2.1 | None | SRR7535086 | Other | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR502943 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496517 | Other | None | SRR6896545 | Other | lineage4.9 | None | SRR7496509 | Other | None | ERR323043 | HR-TB | None | ERR323039 | HR-TB | None | SRR9971114 | Other | lineage2.2.1 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR323053 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR11049020 | Other | lineage4.8 | None | ERR3283036 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR349265 | Sensitive | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR3797069 | Other | None | ERR373947 | Sensitive | lineage4 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3797043 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR400336 | Sensitive | lineage4 | None | ERR4769472 | Other | lineage4.9 | None | ERR400345 | Other | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4407452 | Sensitive | lineage3 | None | ERR4407463 | HR-TB | None | ERR4769419 | Other | lineage4.9 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798431 | HR-TB | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR4810741 | HR-TB | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR4811022 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811105 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6359045 | HR-TB | None | ERR6866241 | Other | lineage4.3.2 | None | ERR6865502 | Sensitive | lineage4 | None | ERR702404 | HR-TB | None | ERR736867 | HR-TB | None | ERR702406 | HR-TB | None | ERR736865 | HR-TB | None | ERR9786604 | Other | None | ERR736874 | HR-TB | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9787139 | Other | lineage6.3.1 | None |
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