EBG00000313339 - n.635_649delTTCCTCTCCGGAGGA
Drug resistance types
33 Sensitive
7 RR-TB
32 HR-TB
17 MDR-TB
4 Pre-XDR-TB
2 XDR-TB
108 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 75 |
| lineage2.2.1 | 12 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage4.3.4.2.1 | 3 |
| La3;lineage2.2.1 | 2 |
| lineage4.9;lineage9 | 2 |
| lineage4.9;lineage6.3 | 9 |
| La3 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2.1 | 2 |
| lineage2.1;lineage4.9 | 9 |
| lineage4.3.3 | 3 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| 18 | |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 6 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.3.2 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.4.1.1 | 1 |
| lineage2.2;lineage4.9 | 1 |
| La3;lineage2.2.2 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage4 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.8 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.1.3 | 2 |
| lineage4.8.1 | 1 |
| lineage3 | 2 |
| lineage4.6.2.2 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.1.2.1 | 1 |
| lineage6.1.3 | 1 |
| lineage3.1;lineage9 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| La3;lineage2 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La2;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage3.1.1 | 1 |
| lineage2.2.2;lineage4 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La1.8.1 | 1 |
| lineage3.1 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage4.6.1.1 | 1 |
| lineage6.3.1 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 203 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675448 | Other | lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1173706 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR4819876 | Other | lineage4.3.4.2.1 | None | SRR29055629 | MDR-TB | La3;lineage2.2.1 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | SRR28119777 | Other | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR176740 | Other | lineage4.9 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR349266 | Sensitive | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR9787197 | Other | None | SRR6789621 | Other | lineage4.9 | None | ERR234659 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR9786671 | Other | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR1173363 | Other | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1196768 | MDR-TB | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR6866241 | Other | lineage4.3.2 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR18909918 | Other | lineage2.2.1.1 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR363479 | Sensitive | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | SRR29093099 | MDR-TB | La3;lineage2.2.2 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR1173384 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR349265 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR29093909 | Other | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR11049020 | Other | lineage4.8 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR4407452 | Other | lineage3 | None | ERR373947 | Other | lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR3675311 | Other | lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR3675221 | Other | lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR1173633 | Other | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR4407463 | HR-TB | None | ERR9787165 | Other | lineage6.1.3 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR987729 | HR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | SRR1175074 | Other | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR1169194 | Other | lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR7496517 | Other | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR1196494 | MDR-TB | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR11662694 | Other | lineage4.9 | None | SRR6789626 | Other | None | ERR363449 | Sensitive | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | SRR28119753 | Other | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR1196474 | Other | lineage3.1.1 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | SRR1196546 | Other | lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR7535086 | Other | None | ERR349298 | Sensitive | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4800341 | Other | lineage3 | None | ERR363445 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR7236330 | Other | La1.8.1 | None | SRR1172234 | Other | lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR176751 | Other | lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4769419 | Sensitive | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR987722 | MDR-TB | None | SRR25827682 | Other | None | SRR1172857 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR3675572 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR1173778 | Other | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR1173788 | Sensitive | lineage4.9 | None | SRR29772570 | Other | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR369158 | Other | lineage4.9 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR363498 | Sensitive | lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR1173355 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR363490 | Sensitive | lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None |
|---|
