Run ID: SRR1175074
Sample name:
Date: 2024-10-04T11:38:34.038715
Number of reads: 495576
Percentage reads mapped: 52.22
Median coverage: 11.0
Strain:
Spoligotype:
Drug-resistance: Other
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage4.4.1 | Euro-American (S-type) | None | 0.89 |
lineage4.4.1.1 | Euro-American | None | 0.58 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | ||||
ethambutol | embB | p.Gln497Arg | Assoc w R | |
pyrazinamide | ||||
streptomycin | rpsL | p.Lys88Arg | Assoc w R | |
rrs | n.462C>T | Uncertain significance | Mutation from literature | |
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|---|---|---|---|---|---|---|
rpsL | 781822 | p.Lys88Arg | missense_variant | 0.6 | streptomycin | Assoc w R | |
rrs | 1472307 | n.462C>T | non_coding_transcript_exon_variant | 0.62 | streptomycin | Uncertain significance | Mutation from literature |
embB | 4248003 | p.Gln497Arg | missense_variant | 0.53 | ethambutol | Assoc w R |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
dnaA | 30 | c.30C>G | synonymous_variant | 0.4 | isoniazid | |
dnaA | 42 | c.42C>T | synonymous_variant | 0.37 | isoniazid | |
dnaA | 912 | c.912T>G | synonymous_variant | 0.41 | isoniazid | |
dnaA | 918 | c.918C>G | synonymous_variant | 0.52 | isoniazid | |
dnaA | 921 | c.921A>G | synonymous_variant | 0.52 | isoniazid | Not assoc w R - Interim |
dnaA | 942 | c.942C>G | synonymous_variant | 0.53 | isoniazid | |
dnaA | 945 | c.945G>A | synonymous_variant | 0.5 | isoniazid | |
dnaA | 955 | c.955A>C | synonymous_variant | 0.44 | isoniazid | |
dnaA | 960 | c.960C>A | synonymous_variant | 0.44 | isoniazid | |
dnaA | 963 | c.963C>G | synonymous_variant | 0.41 | isoniazid | |
dnaA | 966 | c.966T>C | synonymous_variant | 0.41 | isoniazid | |
dnaA | 969 | c.969G>A | synonymous_variant | 0.39 | isoniazid | |
dnaA | 1098 | c.1098A>G | synonymous_variant | 0.39 | isoniazid | |
dnaA | 1104 | c.1104T>C | synonymous_variant | 0.39 | isoniazid | |
dnaA | 1110 | c.1110T>C | synonymous_variant | 0.39 | isoniazid | |
dnaA | 1113 | c.1113A>G | synonymous_variant | 0.39 | isoniazid | |
dnaA | 1125 | c.1125G>C | synonymous_variant | 0.33 | isoniazid | |
dnaA | 1137 | c.1137C>G | synonymous_variant | 0.29 | isoniazid | |
dnaA | 1143 | c.1143G>C | synonymous_variant | 0.28 | isoniazid | |
dnaA | 1220 | p.Asn407Ser | missense_variant | 0.32 | isoniazid | |
dnaA | 1230 | c.1230A>G | synonymous_variant | 0.32 | isoniazid | |
dnaA | 1236 | c.1236C>T | synonymous_variant | 0.35 | isoniazid | |
dnaA | 1242 | c.1242G>C | synonymous_variant | 0.35 | isoniazid | |
dnaA | 1245 | c.1245G>C | synonymous_variant | 0.35 | isoniazid | Not assoc w R - Interim |
dnaA | 1254 | c.1254T>C | synonymous_variant | 0.33 | isoniazid | |
dnaA | 1278 | c.1278T>C | synonymous_variant | 0.44 | isoniazid | |
dnaA | 1284 | c.1284C>G | synonymous_variant | 0.45 | isoniazid | |
dnaA | 1383 | c.1383A>G | synonymous_variant | 0.32 | isoniazid | |
dnaA | 1389 | c.1389C>G | synonymous_variant | 0.32 | isoniazid | |
dnaA | 1392 | c.1392A>G | synonymous_variant | 0.32 | isoniazid | |
dnaA | 1395 | c.1395G>C | synonymous_variant | 0.32 | isoniazid | |
dnaA | 1404 | c.1404T>C | synonymous_variant | 0.32 | isoniazid | |
dnaA | 1407 | c.1407T>C | synonymous_variant | 0.32 | isoniazid | |
dnaA | 1413 | c.1413A>C | synonymous_variant | 0.33 | isoniazid | |
dnaA | 1416 | c.1416C>G | synonymous_variant | 0.35 | isoniazid | |
gyrB | 6130 | c.891T>C | synonymous_variant | 0.4 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6136 | c.897G>A | synonymous_variant | 0.47 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | ||||||
gyrB | 6139 | c.900G>C | synonymous_variant | 0.47 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6144 | p.His302Arg | missense_variant | 0.5 | levofloxacin | Uncertain significance |
moxifloxacin | Uncertain significance | |||||
gyrB | 6196 | c.957C>T | synonymous_variant | 0.37 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 6967 | c.-335T>C | upstream_gene_variant | 0.73 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 6973 | c.-329G>C | upstream_gene_variant | 0.73 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 6982 | c.-320A>C | upstream_gene_variant | 0.67 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
gyrA | 7391 | c.90C>T | synonymous_variant | 0.47 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7394 | c.93T>C | synonymous_variant | 0.47 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | ||||||
gyrA | 8405 | c.1104C>T | synonymous_variant | 0.6 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8420 | c.1119T>C | synonymous_variant | 0.77 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8891 | c.1590G>A | synonymous_variant | 0.38 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8897 | c.1596T>C | synonymous_variant | 0.36 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8903 | c.1602T>C | synonymous_variant | 0.36 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8933 | c.1632G>C | synonymous_variant | 0.56 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8939 | c.1638T>C | synonymous_variant | 0.47 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8942 | c.1641G>C | synonymous_variant | 0.5 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8966 | c.1665C>G | synonymous_variant | 0.5 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8967 | p.Ala556Arg | missense_variant | 0.5 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8987 | c.1686C>G | synonymous_variant | 0.43 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9143 | c.1842T>C | synonymous_variant | 0.27 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
gyrA | 9182 | c.1881T>C | synonymous_variant | 0.27 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 9191 | c.1890G>C | synonymous_variant | 0.32 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9200 | c.1899A>G | synonymous_variant | 0.3 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 9204 | p.Ser635Thr | missense_variant | 0.3 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9252 | p.Val651Ile | missense_variant | 0.5 | levofloxacin | Uncertain significance |
moxifloxacin | Uncertain significance | |||||
gyrA | 9284 | c.1983T>C | synonymous_variant | 0.67 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
gyrA | 9308 | p.Asp669Glu | missense_variant | 0.64 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9323 | c.2022C>A | synonymous_variant | 0.64 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9335 | c.2034G>C | synonymous_variant | 0.57 | levofloxacin | |
moxifloxacin | ||||||
mshA | 575117 | c.-231T>C | upstream_gene_variant | 0.64 | isoniazid | |
ethionamide | ||||||
mshA | 575118 | c.-230_-228delACGinsGCC | upstream_gene_variant | 0.58 | isoniazid | |
ethionamide | ||||||
mshA | 575124 | c.-224_-222delGGGinsCGC | upstream_gene_variant | 0.64 | isoniazid | |
ethionamide | ||||||
mshA | 575137 | c.-211C>G | upstream_gene_variant | 0.64 | isoniazid | |
ethionamide | ||||||
ccsA | 619579 | c.-312G>C | upstream_gene_variant | 0.5 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 619584 | c.-307A>T | upstream_gene_variant | 0.5 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 619591 | c.-300G>C | upstream_gene_variant | 0.56 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 619594 | c.-297G>T | upstream_gene_variant | 0.56 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 619609 | c.-282G>C | upstream_gene_variant | 0.67 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 619634 | c.-257T>A | upstream_gene_variant | 0.67 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 619645 | c.-246G>C | upstream_gene_variant | 0.6 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 619654 | c.-237A>G | upstream_gene_variant | 0.58 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620367 | c.477T>C | synonymous_variant | 0.39 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620373 | c.483C>T | synonymous_variant | 0.4 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620385 | c.495G>C | synonymous_variant | 0.4 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620388 | c.498A>G | synonymous_variant | 0.4 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620389 | c.499C>T | synonymous_variant | 0.4 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620412 | c.522T>C | synonymous_variant | 0.5 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620415 | c.525T>C | synonymous_variant | 0.47 | kanamycin | Not assoc w R - Interim |
capreomycin | Not assoc w R - Interim | |||||
amikacin | Not assoc w R - Interim | |||||
ccsA | 620421 | c.531G>C | synonymous_variant | 0.47 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620424 | c.534G>C | synonymous_variant | 0.47 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620433 | c.543C>G | synonymous_variant | 0.44 | kanamycin | Not assoc w R - Interim |
capreomycin | Not assoc w R - Interim | |||||
amikacin | Not assoc w R - Interim | |||||
ccsA | 620436 | c.546T>A | synonymous_variant | 0.44 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620439 | c.549T>C | synonymous_variant | 0.44 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620445 | c.555A>G | synonymous_variant | 0.44 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
Rv0565c | 656511 | c.960T>C | synonymous_variant | 0.38 | ethionamide | Not assoc w R - Interim |
hadA | 731774 | c.-156T>C | upstream_gene_variant | 0.42 | isoniazid | |
hadA | 731789 | c.-141A>G | upstream_gene_variant | 0.48 | isoniazid | |
hadA | 731792 | c.-138G>A | upstream_gene_variant | 0.45 | isoniazid | |
hadA | 731801 | c.-129C>G | upstream_gene_variant | 0.42 | isoniazid | |
hadA | 731816 | c.-114G>A | upstream_gene_variant | 0.36 | isoniazid | |
hadA | 731840 | c.-90G>C | upstream_gene_variant | 0.33 | isoniazid | |
hadA | 732295 | c.366G>C | synonymous_variant | 0.5 | isoniazid | |
hadA | 732305 | p.Ile126Val | missense_variant | 0.55 | isoniazid | |
hadA | 732308 | p.Val127Ile | missense_variant | 0.55 | isoniazid | |
hadA | 732321 | p.Glu131Ala | missense_variant | 0.5 | isoniazid | |
hadA | 732329 | p.Leu134Val | missense_variant | 0.45 | isoniazid | Uncertain significance |
hadA | 732337 | c.408G>A | synonymous_variant | 0.47 | isoniazid | |
hadA | 732378 | c.450_452dupAGA | disruptive_inframe_insertion | 0.64 | isoniazid | |
hadA | 732396 | p.Gly156Ala | missense_variant | 0.65 | isoniazid | |
hadA | 732398 | p.Ala157Thr | missense_variant | 0.61 | isoniazid | |
nusG | 734407 | p.Val52Ile | missense_variant | 0.54 | rifampicin | |
nusG | 734421 | c.168A>G | synonymous_variant | 0.6 | rifampicin | |
nusG | 734424 | c.171G>A | synonymous_variant | 0.6 | rifampicin | |
nusG | 734442 | c.189G>A | synonymous_variant | 0.61 | rifampicin | |
nusG | 734451 | c.198G>C | synonymous_variant | 0.71 | rifampicin | |
nusG | 734457 | c.204C>G | synonymous_variant | 0.72 | rifampicin | |
nusG | 734472 | c.219T>C | synonymous_variant | 0.75 | rifampicin | |
nusG | 734475 | c.222T>C | synonymous_variant | 0.8 | rifampicin | Not assoc w R - Interim |
nusG | 734499 | c.246G>C | synonymous_variant | 0.69 | rifampicin | |
nusG | 734532 | c.279A>G | synonymous_variant | 0.41 | rifampicin | Not assoc w R - Interim |
nusG | 734559 | c.306T>C | synonymous_variant | 0.39 | rifampicin | |
nusG | 734580 | c.327T>C | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
nusG | 734589 | c.336G>C | synonymous_variant | 0.35 | rifampicin | |
nusG | 734596 | c.343T>C | synonymous_variant | 0.33 | rifampicin | |
rpoB | 760101 | c.295T>C | synonymous_variant | 0.71 | rifampicin | Not assoc w R - Interim |
rpoB | 760112 | c.306T>C | synonymous_variant | 0.65 | rifampicin | |
rpoB | 760118 | c.312T>G | synonymous_variant | 0.64 | rifampicin | Not assoc w R - Interim |
rpoB | 760121 | c.315T>C | synonymous_variant | 0.59 | rifampicin | Not assoc w R - Interim |
rpoB | 760130 | p.Asp108Glu | missense_variant | 0.54 | rifampicin | Uncertain significance |
rpoB | 760139 | c.333A>G | synonymous_variant | 0.57 | rifampicin | Not assoc w R - Interim |
rpoB | 760142 | c.336C>G | synonymous_variant | 0.56 | rifampicin | |
rpoB | 760181 | c.375T>C | synonymous_variant | 0.53 | rifampicin | Not assoc w R - Interim |
rpoB | 760184 | c.378A>G | synonymous_variant | 0.53 | rifampicin | Not assoc w R - Interim |
rpoB | 760196 | c.390C>G | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoB | 760223 | c.417T>C | synonymous_variant | 0.52 | rifampicin | |
rpoB | 760235 | c.429T>C | synonymous_variant | 0.59 | rifampicin | Not assoc w R - Interim |
rpoB | 760283 | c.477G>C | synonymous_variant | 0.55 | rifampicin | Not assoc w R - Interim |
rpoB | 760298 | c.492G>C | synonymous_variant | 0.59 | rifampicin | Not assoc w R - Interim |
rpoB | 760307 | c.501T>C | synonymous_variant | 0.6 | rifampicin | |
rpoB | 760310 | c.504G>C | synonymous_variant | 0.61 | rifampicin | |
rpoB | 760328 | c.522G>C | synonymous_variant | 0.64 | rifampicin | |
rpoB | 760331 | c.525G>C | synonymous_variant | 0.64 | rifampicin | |
rpoB | 760340 | c.534G>T | synonymous_variant | 0.6 | rifampicin | Not assoc w R - Interim |
rpoB | 760361 | c.555T>C | synonymous_variant | 0.57 | rifampicin | Not assoc w R - Interim |
rpoB | 760370 | c.564C>G | synonymous_variant | 0.5 | rifampicin | |
rpoB | 760376 | p.Asp190Glu | missense_variant | 0.45 | rifampicin | Uncertain significance |
rpoB | 760380 | p.Thr192Leu | missense_variant | 0.48 | rifampicin | |
rpoB | 760406 | c.600G>C | synonymous_variant | 0.45 | rifampicin | |
rpoB | 760472 | c.666C>T | synonymous_variant | 0.56 | rifampicin | |
rpoB | 760475 | c.669A>G | synonymous_variant | 0.61 | rifampicin | Not assoc w R - Interim |
rpoB | 760481 | c.675G>C | synonymous_variant | 0.65 | rifampicin | Not assoc w R - Interim |
rpoB | 760484 | c.678A>G | synonymous_variant | 0.62 | rifampicin | Not assoc w R - Interim |
rpoB | 760522 | p.Ser239Asn | missense_variant | 0.61 | rifampicin | Uncertain significance |
rpoB | 760547 | c.741G>C | synonymous_variant | 0.62 | rifampicin | Not assoc w R - Interim |
rpoB | 760563 | p.Arg253Met | missense_variant | 0.52 | rifampicin | Uncertain significance |
rpoB | 760591 | p.Val262Ala | missense_variant | 0.52 | rifampicin | |
rpoB | 760611 | c.805T>C | synonymous_variant | 0.53 | rifampicin | Not assoc w R - Interim |
rpoB | 760646 | c.840C>G | synonymous_variant | 0.53 | rifampicin | Not assoc w R - Interim |
rpoB | 760655 | c.849A>G | synonymous_variant | 0.52 | rifampicin | Not assoc w R - Interim |
rpoB | 760661 | c.855A>C | synonymous_variant | 0.59 | rifampicin | Not assoc w R - Interim |
rpoB | 760670 | c.864G>C | synonymous_variant | 0.52 | rifampicin | |
rpoB | 760674 | c.868T>C | synonymous_variant | 0.52 | rifampicin | Not assoc w R - Interim |
rpoB | 760679 | c.873A>G | synonymous_variant | 0.52 | rifampicin | Not assoc w R - Interim |
rpoB | 760683 | c.877T>C | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoB | 760715 | c.909C>G | synonymous_variant | 0.53 | rifampicin | |
rpoB | 760718 | c.912C>T | synonymous_variant | 0.5 | rifampicin | |
rpoB | 760724 | c.918T>C | synonymous_variant | 0.47 | rifampicin | Not assoc w R - Interim |
rpoB | 760730 | c.924T>C | synonymous_variant | 0.44 | rifampicin | Not assoc w R - Interim |
rpoB | 760934 | c.1128C>T | synonymous_variant | 0.47 | rifampicin | |
rpoB | 760946 | c.1140A>G | synonymous_variant | 0.47 | rifampicin | Not assoc w R - Interim |
rpoB | 760982 | c.1176G>C | synonymous_variant | 0.56 | rifampicin | Not assoc w R - Interim |
rpoB | 760985 | c.1179G>C | synonymous_variant | 0.56 | rifampicin | Not assoc w R - Interim |
rpoB | 760991 | c.1185G>C | synonymous_variant | 0.56 | rifampicin | |
rpoB | 761006 | c.1200C>G | synonymous_variant | 0.53 | rifampicin | Not assoc w R - Interim |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.53 | rifampicin | Not assoc w R - Interim |
rpoB | 761021 | c.1215G>C | synonymous_variant | 0.44 | rifampicin | |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.53 | rifampicin | Not assoc w R - Interim |
rpoB | 761036 | c.1230G>C | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.5 | rifampicin | |
rpoB | 761129 | c.1323G>C | synonymous_variant | 0.55 | rifampicin | Not assoc w R - Interim |
rpoB | 761132 | c.1326G>T | synonymous_variant | 0.55 | rifampicin | Not assoc w R - Interim |
rpoB | 761133 | c.1327T>C | synonymous_variant | 0.55 | rifampicin | Not assoc w R - Interim |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.67 | rifampicin | Not assoc w R - Interim |
rpoB | 761180 | c.1374A>C | synonymous_variant | 0.71 | rifampicin | Not assoc w R - Interim |
rpoB | 761189 | c.1383T>C | synonymous_variant | 0.73 | rifampicin | Not assoc w R - Interim |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.69 | rifampicin | Not assoc w R - Interim |
rpoB | 761213 | c.1407G>C | synonymous_variant | 0.56 | rifampicin | |
rpoB | 761219 | c.1413G>C | synonymous_variant | 0.53 | rifampicin | Not assoc w R - Interim |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoB | 761255 | c.1449T>G | synonymous_variant | 0.48 | rifampicin | Not assoc w R - Interim |
rpoB | 761261 | c.1455G>T | synonymous_variant | 0.45 | rifampicin | Not assoc w R - Interim |
rpoB | 761306 | c.1500C>G | synonymous_variant | 0.44 | rifampicin | |
rpoB | 761327 | c.1521A>G | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoB | 761330 | c.1524G>C | synonymous_variant | 0.53 | rifampicin | |
rpoB | 761354 | c.1548C>T | synonymous_variant | 0.5 | rifampicin | |
rpoB | 761531 | c.1725C>G | synonymous_variant | 0.46 | rifampicin | |
rpoB | 761537 | c.1731C>G | synonymous_variant | 0.43 | rifampicin | Not assoc w R - Interim |
rpoB | 761570 | c.1764T>C | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoB | 761573 | c.1767C>G | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoB | 761579 | c.1773G>C | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoB | 761588 | c.1782C>T | synonymous_variant | 0.5 | rifampicin | |
rpoB | 761606 | c.1800C>G | synonymous_variant | 0.52 | rifampicin | |
rpoB | 761612 | c.1806G>C | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoB | 761615 | c.1809A>C | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoB | 761848 | p.Cys681Ser | missense_variant | 0.6 | rifampicin | |
rpoB | 761852 | c.2046C>G | synonymous_variant | 0.55 | rifampicin | |
rpoB | 761858 | c.2052G>C | synonymous_variant | 0.62 | rifampicin | |
rpoB | 761906 | c.2100C>G | synonymous_variant | 0.58 | rifampicin | |
rpoB | 761909 | c.2103T>C | synonymous_variant | 0.58 | rifampicin | |
rpoB | 761912 | c.2106T>C | synonymous_variant | 0.58 | rifampicin | |
rpoB | 761915 | p.Asp703Glu | missense_variant | 0.54 | rifampicin | |
rpoB | 761916 | p.Asp704Asn | missense_variant | 0.54 | rifampicin | |
rpoB | 761948 | c.2142G>C | synonymous_variant | 0.64 | rifampicin | Not assoc w R - Interim |
rpoB | 761954 | c.2148C>G | synonymous_variant | 0.58 | rifampicin | Not assoc w R - Interim |
rpoB | 762008 | c.2202C>T | synonymous_variant | 0.47 | rifampicin | Not assoc w R - Interim |
rpoB | 762014 | c.2208C>T | synonymous_variant | 0.5 | rifampicin | |
rpoB | 762053 | c.2247T>C | synonymous_variant | 0.6 | rifampicin | Not assoc w R - Interim |
rpoB | 762062 | c.2256T>C | synonymous_variant | 0.56 | rifampicin | Not assoc w R - Interim |
rpoB | 762065 | c.2259T>C | synonymous_variant | 0.56 | rifampicin | Not assoc w R - Interim |
rpoB | 762083 | c.2277T>C | synonymous_variant | 0.59 | rifampicin | Not assoc w R - Interim |
rpoB | 762086 | c.2280G>C | synonymous_variant | 0.59 | rifampicin | Not assoc w R - Interim |
rpoB | 762101 | c.2295C>G | synonymous_variant | 0.65 | rifampicin | Not assoc w R - Interim |
rpoB | 762114 | p.Ile770Val | missense_variant | 0.65 | rifampicin | Uncertain significance |
rpoB | 762131 | c.2325C>G | synonymous_variant | 0.67 | rifampicin | |
rpoB | 762140 | c.2334G>C | synonymous_variant | 0.56 | rifampicin | |
rpoB | 762143 | c.2337T>C | synonymous_variant | 0.59 | rifampicin | |
rpoB | 762149 | c.2343G>C | synonymous_variant | 0.61 | rifampicin | Not assoc w R - Interim |
rpoB | 762167 | c.2361T>C | synonymous_variant | 0.7 | rifampicin | Not assoc w R - Interim |
rpoB | 762176 | c.2370T>C | synonymous_variant | 0.67 | rifampicin | Not assoc w R - Interim |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.59 | rifampicin | Not assoc w R - Interim |
rpoB | 762206 | c.2400C>G | synonymous_variant | 0.62 | rifampicin | |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.64 | rifampicin | Not assoc w R - Interim |
rpoB | 762246 | c.2440C>T | synonymous_variant | 0.67 | rifampicin | |
rpoB | 762254 | c.2448T>G | synonymous_variant | 0.6 | rifampicin | |
rpoB | 762257 | c.2451C>G | synonymous_variant | 0.6 | rifampicin | |
rpoB | 762266 | c.2460T>C | synonymous_variant | 0.59 | rifampicin | |
rpoB | 762284 | c.2478G>C | synonymous_variant | 0.68 | rifampicin | Not assoc w R - Interim |
rpoB | 762293 | c.2487T>C | synonymous_variant | 0.64 | rifampicin | Not assoc w R - Interim |
rpoB | 762317 | c.2511A>G | synonymous_variant | 0.65 | rifampicin | Not assoc w R - Interim |
rpoB | 762329 | c.2523G>C | synonymous_variant | 0.61 | rifampicin | Not assoc w R - Interim |
rpoB | 762338 | c.2532T>C | synonymous_variant | 0.52 | rifampicin | |
rpoB | 762347 | c.2541T>C | synonymous_variant | 0.54 | rifampicin | |
rpoB | 762362 | p.Glu852Asp | missense_variant | 0.55 | rifampicin | |
rpoB | 762369 | c.2563T>C | synonymous_variant | 0.5 | rifampicin | |
rpoC | 762395 | c.-975G>C | upstream_gene_variant | 0.54 | rifampicin | |
rpoB | 762416 | c.2610A>G | synonymous_variant | 0.43 | rifampicin | Not assoc w R - Interim |
rpoC | 762419 | c.-951C>G | upstream_gene_variant | 0.5 | rifampicin | |
rpoC | 762434 | c.-936T>C | upstream_gene_variant | 0.58 | rifampicin | |
rpoB | 762449 | c.2643C>A | synonymous_variant | 0.55 | rifampicin | Not assoc w R - Interim |
rpoC | 762467 | c.-903C>T | upstream_gene_variant | 0.5 | rifampicin | |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.38 | rifampicin | |
rpoB | 762995 | c.3189G>T | synonymous_variant | 0.44 | rifampicin | Not assoc w R - Interim |
rpoC | 763013 | c.-357C>G | upstream_gene_variant | 0.5 | rifampicin | |
rpoB | 763028 | c.3222T>C | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoB | 763031 | c.3225T>G | synonymous_variant | 0.53 | rifampicin | Not assoc w R - Interim |
rpoB | 763034 | c.3228C>G | synonymous_variant | 0.57 | rifampicin | Not assoc w R - Interim |
rpoB | 763040 | c.3234C>G | synonymous_variant | 0.53 | rifampicin | Not assoc w R - Interim |
rpoC | 763067 | c.-303C>G | upstream_gene_variant | 0.54 | rifampicin | |
rpoB | 763070 | c.3264T>C | synonymous_variant | 0.62 | rifampicin | Not assoc w R - Interim |
rpoB | 763085 | c.3279C>G | synonymous_variant | 0.72 | rifampicin | Not assoc w R - Interim |
rpoB | 763115 | c.3309T>C | synonymous_variant | 0.62 | rifampicin | Not assoc w R - Interim |
rpoB | 763136 | c.3330C>T | synonymous_variant | 0.53 | rifampicin | Not assoc w R - Interim |
rpoC | 763148 | c.-222G>C | upstream_gene_variant | 0.58 | rifampicin | |
rpoC | 763158 | c.-212C>T | upstream_gene_variant | 0.5 | rifampicin | |
rpoB | 763166 | c.3360A>G | synonymous_variant | 0.53 | rifampicin | Not assoc w R - Interim |
rpoC | 763402 | c.33C>G | synonymous_variant | 0.39 | rifampicin | |
rpoC | 763411 | c.42T>G | synonymous_variant | 0.41 | rifampicin | Not assoc w R - Interim |
rpoC | 763414 | c.45T>C | synonymous_variant | 0.43 | rifampicin | |
rpoC | 763441 | c.72C>T | synonymous_variant | 0.41 | rifampicin | |
rpoC | 763444 | c.75T>C | synonymous_variant | 0.41 | rifampicin | Not assoc w R - Interim |
rpoC | 763456 | c.87A>G | synonymous_variant | 0.45 | rifampicin | Not assoc w R - Interim |
rpoC | 763486 | c.117T>G | synonymous_variant | 0.56 | rifampicin | |
rpoC | 763492 | c.123G>C | synonymous_variant | 0.53 | rifampicin | Not assoc w R - Interim |
rpoC | 763528 | c.159G>A | synonymous_variant | 0.63 | rifampicin | Not assoc w R - Interim |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.64 | rifampicin | Not assoc w R - Interim |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.7 | rifampicin | Not assoc w R - Interim |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.71 | rifampicin | Not assoc w R - Interim |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.77 | rifampicin | Not assoc w R - Interim |
rpoC | 763603 | c.234C>T | synonymous_variant | 0.7 | rifampicin | Not assoc w R - Interim |
rpoC | 763636 | c.267T>C | synonymous_variant | 0.7 | rifampicin | |
rpoC | 763657 | c.288G>A | synonymous_variant | 0.7 | rifampicin | Not assoc w R - Interim |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.69 | rifampicin | Not assoc w R - Interim |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.59 | rifampicin | Not assoc w R - Interim |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.64 | rifampicin | Not assoc w R - Interim |
rpoC | 763702 | c.333C>G | synonymous_variant | 0.7 | rifampicin | Not assoc w R - Interim |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.75 | rifampicin | Not assoc w R - Interim |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.75 | rifampicin | |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.74 | rifampicin | |
rpoC | 763741 | c.372C>T | synonymous_variant | 0.7 | rifampicin | |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.7 | rifampicin | |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.65 | rifampicin | |
rpoC | 763774 | c.405G>C | synonymous_variant | 0.63 | rifampicin | |
rpoC | 763807 | c.438T>C | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoC | 763816 | c.447C>G | synonymous_variant | 0.38 | rifampicin | |
rpoC | 764236 | c.867G>A | synonymous_variant | 0.47 | rifampicin | Not assoc w R - Interim |
rpoC | 764248 | c.879C>G | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoC | 764257 | c.888G>C | synonymous_variant | 0.52 | rifampicin | |
rpoC | 764266 | c.897T>C | synonymous_variant | 0.43 | rifampicin | |
rpoC | 764269 | c.900G>C | synonymous_variant | 0.45 | rifampicin | |
rpoC | 764272 | c.903G>C | synonymous_variant | 0.48 | rifampicin | |
rpoC | 764278 | c.909A>G | synonymous_variant | 0.52 | rifampicin | Not assoc w R - Interim |
rpoC | 764338 | c.969G>A | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoC | 764428 | c.1059G>C | synonymous_variant | 0.46 | rifampicin | Not assoc w R - Interim |
rpoC | 764431 | c.1062G>C | synonymous_variant | 0.46 | rifampicin | Not assoc w R - Interim |
rpoC | 764434 | c.1065A>G | synonymous_variant | 0.53 | rifampicin | Not assoc w R - Interim |
rpoC | 764446 | c.1077T>C | synonymous_variant | 0.5 | rifampicin | |
rpoC | 764449 | c.1080G>C | synonymous_variant | 0.5 | rifampicin | |
rpoC | 764452 | c.1083T>C | synonymous_variant | 0.5 | rifampicin | |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoC | 764489 | c.1120C>T | synonymous_variant | 0.67 | rifampicin | |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.71 | rifampicin | Not assoc w R - Interim |
rpoC | 764510 | c.1141C>T | synonymous_variant | 0.74 | rifampicin | Not assoc w R - Interim |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.71 | rifampicin | Not assoc w R - Interim |
rpoC | 764527 | c.1158C>T | synonymous_variant | 0.73 | rifampicin | Not assoc w R - Interim |
rpoC | 764536 | c.1167G>C | synonymous_variant | 0.67 | rifampicin | |
rpoC | 764539 | c.1170C>G | synonymous_variant | 0.73 | rifampicin | Not assoc w R - Interim |
rpoC | 764548 | c.1179G>A | synonymous_variant | 0.7 | rifampicin | |
rpoC | 764551 | c.1182G>C | synonymous_variant | 0.7 | rifampicin | |
rpoC | 764554 | c.1185C>T | synonymous_variant | 0.7 | rifampicin | |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.73 | rifampicin | Not assoc w R - Interim |
rpoC | 764593 | c.1224C>T | synonymous_variant | 0.7 | rifampicin | |
rpoC | 764650 | c.1281G>C | synonymous_variant | 0.82 | rifampicin | |
rpoC | 764651 | c.1282_1284delTCGinsAGC | synonymous_variant | 0.82 | rifampicin | |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.48 | rifampicin | Not assoc w R - Interim |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.43 | rifampicin | Not assoc w R - Interim |
rpoC | 764809 | c.1440C>T | synonymous_variant | 0.44 | rifampicin | Not assoc w R |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.47 | rifampicin | Not assoc w R - Interim |
rpoC | 764827 | c.1458G>C | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoC | 765055 | c.1686C>G | synonymous_variant | 0.47 | rifampicin | Not assoc w R - Interim |
rpoC | 765073 | c.1704G>C | synonymous_variant | 0.47 | rifampicin | Not assoc w R - Interim |
rpoC | 765076 | c.1707A>G | synonymous_variant | 0.5 | rifampicin | |
rpoC | 765079 | c.1710T>G | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoC | 765082 | c.1713G>C | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoC | 765089 | c.1720T>C | synonymous_variant | 0.58 | rifampicin | Not assoc w R - Interim |
rpoC | 765103 | c.1734G>T | synonymous_variant | 0.64 | rifampicin | |
rpoC | 765346 | c.1977C>G | synonymous_variant | 0.56 | rifampicin | |
rpoC | 765349 | c.1980T>C | synonymous_variant | 0.58 | rifampicin | Not assoc w R - Interim |
rpoC | 765352 | c.1983G>C | synonymous_variant | 0.61 | rifampicin | Not assoc w R - Interim |
rpoC | 765364 | c.1995G>A | synonymous_variant | 0.65 | rifampicin | |
rpoC | 765383 | p.Met672Leu | missense_variant | 0.67 | rifampicin | Uncertain significance |
rpoC | 765404 | p.Leu679Val | missense_variant | 0.7 | rifampicin | |
rpoC | 765409 | c.2040T>C | synonymous_variant | 0.68 | rifampicin | |
rpoC | 765421 | c.2052C>G | synonymous_variant | 0.7 | rifampicin | Not assoc w R - Interim |
rpoC | 765478 | c.2109T>C | synonymous_variant | 0.68 | rifampicin | Not assoc w R - Interim |
rpoC | 765499 | c.2130C>G | synonymous_variant | 0.79 | rifampicin | Not assoc w R - Interim |
rpoC | 765529 | c.2160C>T | synonymous_variant | 0.57 | rifampicin | |
rpoC | 765541 | c.2172C>G | synonymous_variant | 0.5 | rifampicin | |
rpoC | 765553 | c.2184C>T | synonymous_variant | 0.47 | rifampicin | Not assoc w R - Interim |
rpoC | 765556 | c.2187G>C | synonymous_variant | 0.47 | rifampicin | |
rpoC | 765559 | c.2190G>C | synonymous_variant | 0.5 | rifampicin | |
rpoC | 765580 | c.2211G>C | synonymous_variant | 0.56 | rifampicin | |
rpoC | 765613 | p.His748Gln | missense_variant | 0.6 | rifampicin | |
rpoC | 765625 | c.2256C>G | synonymous_variant | 0.62 | rifampicin | Not assoc w R - Interim |
rpoC | 765628 | c.2259G>C | synonymous_variant | 0.61 | rifampicin | Not assoc w R - Interim |
rpoC | 765631 | p.Asp754Glu | missense_variant | 0.68 | rifampicin | |
rpoC | 765700 | c.2331T>C | synonymous_variant | 0.62 | rifampicin | Not assoc w R - Interim |
rpoC | 765734 | c.2365T>C | synonymous_variant | 0.65 | rifampicin | Not assoc w R - Interim |
rpoC | 765739 | c.2370G>T | synonymous_variant | 0.53 | rifampicin | |
rpoC | 765772 | c.2403C>G | synonymous_variant | 0.53 | rifampicin | |
rpoC | 765784 | c.2415C>G | synonymous_variant | 0.61 | rifampicin | |
rpoC | 765787 | c.2418C>T | synonymous_variant | 0.61 | rifampicin | |
rpoC | 765793 | c.2424C>G | synonymous_variant | 0.73 | rifampicin | |
rpoC | 765796 | c.2427C>T | synonymous_variant | 0.65 | rifampicin | |
rpoC | 765811 | c.2442T>C | synonymous_variant | 0.67 | rifampicin | Not assoc w R - Interim |
rpoC | 765814 | c.2445A>G | synonymous_variant | 0.62 | rifampicin | Not assoc w R - Interim |
rpoC | 765826 | c.2457T>C | synonymous_variant | 0.65 | rifampicin | Not assoc w R - Interim |
rpoC | 765835 | c.2466C>T | synonymous_variant | 0.62 | rifampicin | Not assoc w R - Interim |
rpoC | 765850 | c.2481G>C | synonymous_variant | 0.56 | rifampicin | Not assoc w R - Interim |
rpoC | 765883 | c.2514C>G | synonymous_variant | 0.55 | rifampicin | |
rpoC | 765886 | c.2517C>G | synonymous_variant | 0.52 | rifampicin | |
rpoC | 765892 | c.2523T>C | synonymous_variant | 0.52 | rifampicin | Not assoc w R - Interim |
rpoC | 765937 | c.2568T>C | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoC | 765947 | c.2578T>C | synonymous_variant | 0.46 | rifampicin | Not assoc w R - Interim |
rpoC | 765967 | c.2598C>T | synonymous_variant | 0.45 | rifampicin | Not assoc w R - Interim |
rpoC | 765982 | c.2613C>G | synonymous_variant | 0.5 | rifampicin | |
rpoC | 765994 | c.2625A>T | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoC | 766010 | c.2641_2642delTCinsAG | synonymous_variant | 0.43 | rifampicin | |
rpoC | 766345 | c.2976T>C | synonymous_variant | 0.43 | rifampicin | |
rpoC | 766348 | c.2979A>G | synonymous_variant | 0.47 | rifampicin | Not assoc w R - Interim |
rpoC | 766357 | c.2988C>T | synonymous_variant | 0.53 | rifampicin | |
rpoC | 766363 | c.2994G>C | synonymous_variant | 0.44 | rifampicin | |
rpoC | 766366 | c.2997C>G | synonymous_variant | 0.44 | rifampicin | |
rpoC | 766381 | c.3012C>T | synonymous_variant | 0.44 | rifampicin | |
rpoC | 766384 | c.3015A>G | synonymous_variant | 0.47 | rifampicin | |
rpoC | 766390 | c.3021C>T | synonymous_variant | 0.47 | rifampicin | |
rpoC | 766393 | c.3024C>G | synonymous_variant | 0.47 | rifampicin | |
rpoC | 766408 | c.3039C>G | synonymous_variant | 0.5 | rifampicin | |
rpoC | 766411 | c.3042C>G | synonymous_variant | 0.47 | rifampicin | |
rpoC | 766426 | c.3057C>T | synonymous_variant | 0.54 | rifampicin | |
rpoC | 766900 | c.3531T>C | synonymous_variant | 0.47 | rifampicin | |
rpoC | 766933 | c.3564A>G | synonymous_variant | 0.5 | rifampicin | |
rpoC | 766945 | c.3576A>G | synonymous_variant | 0.47 | rifampicin | Not assoc w R - Interim |
rpoC | 766963 | c.3594T>C | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoC | 766972 | c.3603G>C | synonymous_variant | 0.56 | rifampicin | |
rpoC | 766996 | c.3627C>T | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoC | 767062 | c.3693C>A | synonymous_variant | 0.41 | rifampicin | |
rpoC | 767119 | c.3750A>G | synonymous_variant | 0.44 | rifampicin | Not assoc w R - Interim |
rpoC | 767134 | c.3765C>A | synonymous_variant | 0.5 | rifampicin | |
rpoC | 767158 | c.3789T>C | synonymous_variant | 0.54 | rifampicin | Not assoc w R - Interim |
mmpL5 | 776660 | c.1821C>G | synonymous_variant | 0.35 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 776672 | c.1809G>C | synonymous_variant | 0.41 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 776675 | c.1806G>A | synonymous_variant | 0.41 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 776684 | c.1797G>A | synonymous_variant | 0.44 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 776687 | p.Trp598Phe | missense_variant | 0.47 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 776738 | c.1743C>T | synonymous_variant | 0.44 | bedaquiline | |
clofazimine | ||||||
rpsL | 781715 | c.156T>C | synonymous_variant | 0.56 | streptomycin | |
rpsL | 781728 | c.169T>C | synonymous_variant | 0.61 | streptomycin | |
rpsL | 781736 | c.177T>C | synonymous_variant | 0.53 | streptomycin | |
rpsL | 781742 | c.183C>T | synonymous_variant | 0.5 | streptomycin | |
rpsL | 781748 | c.189C>G | synonymous_variant | 0.53 | streptomycin | |
rpsL | 781754 | c.195G>C | synonymous_variant | 0.53 | streptomycin | |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.5 | streptomycin | |
rpsL | 781772 | c.213C>A | synonymous_variant | 0.53 | streptomycin | |
rplC | 800582 | c.-227C>G | upstream_gene_variant | 0.75 | linezolid | |
rplC | 800612 | c.-197A>G | upstream_gene_variant | 0.59 | linezolid | |
rplC | 800618 | c.-191T>C | upstream_gene_variant | 0.56 | linezolid | |
rplC | 800627 | c.-182C>T | upstream_gene_variant | 0.5 | linezolid | |
rplC | 800648 | c.-161A>T | upstream_gene_variant | 0.47 | linezolid | |
rplC | 800654 | c.-155T>C | upstream_gene_variant | 0.42 | linezolid | |
rplC | 800693 | c.-116A>G | upstream_gene_variant | 0.33 | linezolid | |
rplC | 800703 | c.-106T>C | upstream_gene_variant | 0.29 | linezolid | |
rplC | 800844 | c.36T>C | synonymous_variant | 0.4 | linezolid | |
rplC | 800865 | c.57A>G | synonymous_variant | 0.36 | linezolid | |
rplC | 800867 | p.Ser20Asn | missense_variant | 0.36 | linezolid | |
rplC | 800874 | c.66A>G | synonymous_variant | 0.38 | linezolid | |
rplC | 800875 | p.Val23Ile | missense_variant | 0.38 | linezolid | |
rplC | 800880 | c.72A>G | synonymous_variant | 0.38 | linezolid | |
rplC | 800889 | c.81C>G | synonymous_variant | 0.4 | linezolid | |
rplC | 800892 | c.84G>C | synonymous_variant | 0.38 | linezolid | |
rplC | 800907 | c.99C>G | synonymous_variant | 0.32 | linezolid | |
rplC | 800916 | c.108A>G | synonymous_variant | 0.32 | linezolid | |
rplC | 801321 | c.513C>T | synonymous_variant | 0.33 | linezolid | Not assoc w R - Interim |
rplC | 801324 | c.516T>C | synonymous_variant | 0.37 | linezolid | |
rplC | 801367 | p.Ala187Thr | missense_variant | 0.53 | linezolid | |
rplC | 801402 | c.594T>C | synonymous_variant | 0.44 | linezolid | |
rplC | 801405 | c.597T>C | synonymous_variant | 0.44 | linezolid | |
fbiC | 1303575 | c.645G>C | synonymous_variant | 0.4 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304811 | c.1881C>G | synonymous_variant | 0.4 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304907 | c.1977C>G | synonymous_variant | 0.47 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304910 | c.1980G>C | synonymous_variant | 0.5 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304916 | c.1986T>C | synonymous_variant | 0.54 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304928 | c.1998T>C | synonymous_variant | 0.62 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304937 | c.2007G>C | synonymous_variant | 0.57 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304958 | c.2028T>G | synonymous_variant | 0.62 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304983 | c.2053C>T | synonymous_variant | 0.69 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
rrs | 1471923 | n.78T>C | non_coding_transcript_exon_variant | 0.55 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1471925 | n.80T>C | non_coding_transcript_exon_variant | 0.57 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | ||||||
amikacin | Uncertain significance | |||||
rrs | 1471932 | n.87A>G | non_coding_transcript_exon_variant | 0.61 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
rrs | 1471934 | n.89A>G | non_coding_transcript_exon_variant | 0.61 | kanamycin | |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1471969 | n.124T>C | non_coding_transcript_exon_variant | 0.52 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | ||||||
amikacin | Uncertain significance | |||||
rrs | 1471970 | n.125G>A | non_coding_transcript_exon_variant | 0.5 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.43 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.57 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | ||||||
amikacin | Uncertain significance | |||||
rrs | 1473123 | n.1278delAinsTT | non_coding_transcript_exon_variant | 0.62 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.7 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.67 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.67 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | ||||||
amikacin | Uncertain significance | |||||
rrl | 1473756 | n.99G>A | non_coding_transcript_exon_variant | 0.48 | capreomycin | |
linezolid | ||||||
rrl | 1473758 | n.101G>T | non_coding_transcript_exon_variant | 0.48 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.62 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1473877 | n.220G>A | non_coding_transcript_exon_variant | 0.64 | capreomycin | |
linezolid | ||||||
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.54 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474093 | n.436G>T | non_coding_transcript_exon_variant | 0.67 | capreomycin | |
linezolid | ||||||
rrl | 1474099 | n.442G>A | non_coding_transcript_exon_variant | 0.59 | capreomycin | |
linezolid | ||||||
rrl | 1474103 | n.446A>T | non_coding_transcript_exon_variant | 0.59 | capreomycin | |
linezolid | ||||||
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 0.52 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.52 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 0.54 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.5 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474291 | n.635_649delTTCCTCTCCGGAGGA | non_coding_transcript_exon_variant | 0.62 | capreomycin | |
linezolid | ||||||
rrl | 1474308 | n.651G>T | non_coding_transcript_exon_variant | 0.53 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474310 | n.653T>G | non_coding_transcript_exon_variant | 0.57 | capreomycin | |
linezolid | ||||||
rrl | 1474356 | n.699T>C | non_coding_transcript_exon_variant | 0.58 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1474639 | n.982G>A | non_coding_transcript_exon_variant | 0.41 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.59 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.6 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474823 | n.1166C>T | non_coding_transcript_exon_variant | 0.58 | capreomycin | |
linezolid | ||||||
rrl | 1474831 | n.1174A>G | non_coding_transcript_exon_variant | 0.54 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1474904 | n.1247G>A | non_coding_transcript_exon_variant | 0.41 | capreomycin | |
linezolid | ||||||
rrl | 1475088 | n.1431A>T | non_coding_transcript_exon_variant | 0.53 | capreomycin | |
linezolid | ||||||
rrl | 1475199 | n.1542G>A | non_coding_transcript_exon_variant | 0.47 | capreomycin | |
linezolid | ||||||
rrl | 1475206 | n.1549C>T | non_coding_transcript_exon_variant | 0.53 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475209 | n.1552G>C | non_coding_transcript_exon_variant | 0.53 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475213 | n.1556C>T | non_coding_transcript_exon_variant | 0.53 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475249 | n.1592T>C | non_coding_transcript_exon_variant | 0.41 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475252 | n.1595C>T | non_coding_transcript_exon_variant | 0.47 | capreomycin | |
linezolid | ||||||
rrl | 1475266 | n.1609T>C | non_coding_transcript_exon_variant | 0.5 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475267 | n.1610G>A | non_coding_transcript_exon_variant | 0.5 | capreomycin | |
linezolid | ||||||
rrl | 1475275 | n.1618C>T | non_coding_transcript_exon_variant | 0.47 | capreomycin | |
linezolid | ||||||
rrl | 1475276 | n.1619T>C | non_coding_transcript_exon_variant | 0.47 | capreomycin | |
linezolid | ||||||
rrl | 1475291 | n.1634A>C | non_coding_transcript_exon_variant | 0.6 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475313 | n.1656G>A | non_coding_transcript_exon_variant | 0.67 | capreomycin | |
linezolid | ||||||
rrl | 1475315 | n.1658A>T | non_coding_transcript_exon_variant | 0.64 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 0.67 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475369 | n.1712G>T | non_coding_transcript_exon_variant | 0.71 | capreomycin | |
linezolid | ||||||
rrl | 1475402 | n.1745C>T | non_coding_transcript_exon_variant | 0.67 | capreomycin | |
linezolid | ||||||
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.72 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475429 | n.1772G>A | non_coding_transcript_exon_variant | 0.74 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475436 | n.1779C>T | non_coding_transcript_exon_variant | 0.74 | capreomycin | |
linezolid | ||||||
rrl | 1475483 | n.1826C>T | non_coding_transcript_exon_variant | 0.61 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.59 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.61 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475599 | n.1942A>G | non_coding_transcript_exon_variant | 0.62 | capreomycin | |
linezolid | Uncertain significance | |||||
rrl | 1475608 | n.1951T>C | non_coding_transcript_exon_variant | 0.52 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475642 | n.1985T>C | non_coding_transcript_exon_variant | 0.52 | capreomycin | |
linezolid | ||||||
rrl | 1475657 | n.2000A>G | non_coding_transcript_exon_variant | 0.42 | capreomycin | |
linezolid | ||||||
rrl | 1475659 | n.2002G>T | non_coding_transcript_exon_variant | 0.42 | capreomycin | |
linezolid | ||||||
rrl | 1475761 | n.2104_2106delCGCinsGT | non_coding_transcript_exon_variant | 0.63 | capreomycin | |
linezolid | ||||||
rrl | 1475765 | n.2111delG | non_coding_transcript_exon_variant | 0.65 | capreomycin | |
linezolid | ||||||
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.67 | capreomycin | |
linezolid | ||||||
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.48 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1476031 | n.2374C>T | non_coding_transcript_exon_variant | 0.42 | capreomycin | |
linezolid | ||||||
rrl | 1476032 | n.2375C>A | non_coding_transcript_exon_variant | 0.39 | capreomycin | |
linezolid | ||||||
rrl | 1476033 | n.2376T>C | non_coding_transcript_exon_variant | 0.39 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1476034 | n.2377C>A | non_coding_transcript_exon_variant | 0.39 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1476045 | n.2388G>T | non_coding_transcript_exon_variant | 0.36 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1476047 | n.2390G>T | non_coding_transcript_exon_variant | 0.36 | capreomycin | |
linezolid | ||||||
rrl | 1476048 | n.2391G>A | non_coding_transcript_exon_variant | 0.38 | capreomycin | |
linezolid | ||||||
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.4 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476086 | n.2429G>A | non_coding_transcript_exon_variant | 0.58 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476089 | n.2432T>C | non_coding_transcript_exon_variant | 0.57 | capreomycin | |
linezolid | ||||||
rrl | 1476095 | n.2438C>G | non_coding_transcript_exon_variant | 0.56 | capreomycin | |
linezolid | ||||||
rrl | 1476105 | n.2448_2449delGAinsT | non_coding_transcript_exon_variant | 0.61 | capreomycin | |
linezolid | ||||||
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.67 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476117 | n.2460G>C | non_coding_transcript_exon_variant | 0.67 | capreomycin | |
linezolid | ||||||
rrl | 1476214 | n.2557G>A | non_coding_transcript_exon_variant | 0.54 | capreomycin | |
linezolid | ||||||
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.53 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476583 | n.2926G>A | non_coding_transcript_exon_variant | 0.48 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.46 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.46 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.46 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.46 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.48 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476716 | n.3059A>C | non_coding_transcript_exon_variant | 0.28 | capreomycin | Uncertain significance |
linezolid | ||||||
inhA | 1673901 | c.-301A>G | upstream_gene_variant | 0.58 | isoniazid | |
ethionamide | ||||||
inhA | 1673905 | c.-297T>G | upstream_gene_variant | 0.62 | isoniazid | |
ethionamide | ||||||
inhA | 1673916 | c.-286A>C | upstream_gene_variant | 0.67 | isoniazid | |
ethionamide | ||||||
inhA | 1673917 | c.-285G>C | upstream_gene_variant | 0.73 | isoniazid | |
ethionamide | ||||||
inhA | 1673922 | c.-280T>C | upstream_gene_variant | 0.73 | isoniazid | |
ethionamide | ||||||
inhA | 1673941 | c.-261G>T | upstream_gene_variant | 0.69 | isoniazid | |
ethionamide | ||||||
inhA | 1673946 | c.-256C>G | upstream_gene_variant | 0.64 | isoniazid | |
ethionamide | ||||||
inhA | 1673955 | c.-247G>C | upstream_gene_variant | 0.69 | isoniazid | |
ethionamide | ||||||
inhA | 1673961 | c.-241A>C | upstream_gene_variant | 0.64 | isoniazid | |
ethionamide | ||||||
inhA | 1674561 | c.360C>T | synonymous_variant | 0.53 | isoniazid | |
ethionamide | ||||||
inhA | 1674801 | c.600T>C | synonymous_variant | 0.58 | isoniazid | |
ethionamide | ||||||
inhA | 1674879 | c.678T>C | synonymous_variant | 0.75 | isoniazid | |
ethionamide | ||||||
rpsA | 1833554 | p.Thr5Ala | missense_variant | 0.73 | pyrazinamide | Uncertain significance |
rpsA | 1833568 | c.27G>C | synonymous_variant | 0.67 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1833589 | c.48A>T | synonymous_variant | 0.65 | pyrazinamide | |
rpsA | 1833595 | c.54T>C | synonymous_variant | 0.67 | pyrazinamide | |
rpsA | 1833661 | c.120A>G | synonymous_variant | 0.54 | pyrazinamide | |
rpsA | 1833667 | c.126C>G | synonymous_variant | 0.54 | pyrazinamide | |
rpsA | 1833721 | c.180A>G | synonymous_variant | 0.68 | pyrazinamide | |
rpsA | 1833724 | c.183C>G | synonymous_variant | 0.67 | pyrazinamide | |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.7 | pyrazinamide | |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.64 | pyrazinamide | |
rpsA | 1833745 | c.204G>C | synonymous_variant | 0.67 | pyrazinamide | |
rpsA | 1833748 | c.207C>G | synonymous_variant | 0.65 | pyrazinamide | |
rpsA | 1833787 | c.246C>G | synonymous_variant | 0.56 | pyrazinamide | |
rpsA | 1833802 | c.261A>G | synonymous_variant | 0.58 | pyrazinamide | |
rpsA | 1833811 | c.270G>T | synonymous_variant | 0.56 | pyrazinamide | |
rpsA | 1833838 | c.297G>C | synonymous_variant | 0.65 | pyrazinamide | |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.67 | pyrazinamide | |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.71 | pyrazinamide | |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.7 | pyrazinamide | |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.74 | pyrazinamide | |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.56 | pyrazinamide | |
rpsA | 1833940 | c.399C>G | synonymous_variant | 0.46 | pyrazinamide | |
rpsA | 1833971 | c.430C>T | synonymous_variant | 0.42 | pyrazinamide | |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.39 | pyrazinamide | |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.57 | pyrazinamide | |
rpsA | 1834021 | c.480C>T | synonymous_variant | 0.55 | pyrazinamide | |
rpsA | 1834030 | c.489C>G | synonymous_variant | 0.5 | pyrazinamide | |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.54 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.54 | pyrazinamide | |
rpsA | 1834618 | c.1077G>C | synonymous_variant | 0.62 | pyrazinamide | |
rpsA | 1834633 | c.1092A>G | synonymous_variant | 0.53 | pyrazinamide | |
rpsA | 1834639 | c.1098T>C | synonymous_variant | 0.5 | pyrazinamide | |
tsnR | 1853361 | c.-245T>C | upstream_gene_variant | 0.69 | linezolid | |
tsnR | 1853370 | c.-236_-234delGCAinsTCG | upstream_gene_variant | 0.64 | linezolid | |
tsnR | 1853387 | c.-219T>G | upstream_gene_variant | 0.5 | linezolid | |
tsnR | 1853394 | c.-212_-211delCTinsGC | upstream_gene_variant | 0.5 | linezolid | |
tsnR | 1853420 | c.-186T>G | upstream_gene_variant | 0.5 | linezolid | |
tsnR | 1853429 | c.-177G>C | upstream_gene_variant | 0.47 | linezolid | |
tsnR | 1853432 | c.-174G>C | upstream_gene_variant | 0.47 | linezolid | |
tsnR | 1853447 | c.-159C>G | upstream_gene_variant | 0.56 | linezolid | |
tsnR | 1853459 | c.-147G>C | upstream_gene_variant | 0.46 | linezolid | |
tsnR | 1853462 | c.-144A>G | upstream_gene_variant | 0.46 | linezolid | |
tsnR | 1853468 | c.-138C>G | upstream_gene_variant | 0.43 | linezolid | |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 | capreomycin | Not assoc w R |
bacA | 2064993 | c.-265T>C | upstream_gene_variant | 0.4 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
ndh | 2101939 | c.1104A>G | synonymous_variant | 0.55 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2101960 | c.1083A>G | synonymous_variant | 0.54 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2101963 | c.1080G>A | synonymous_variant | 0.5 | isoniazid | Not assoc w R - Interim |
delamanid | Not assoc w R - Interim | |||||
ethionamide | Not assoc w R - Interim | |||||
ndh | 2101966 | c.1077T>G | synonymous_variant | 0.5 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2101972 | c.1071G>C | synonymous_variant | 0.5 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102990 | p.Val18Ala | missense_variant | 1.0 | isoniazid | Not assoc w R |
delamanid | Uncertain significance | |||||
ethionamide | Uncertain significance | |||||
katG | 2155695 | c.417C>G | synonymous_variant | 0.5 | isoniazid | |
katG | 2155704 | c.408C>G | synonymous_variant | 0.47 | isoniazid | |
katG | 2156117 | c.-6A>G | upstream_gene_variant | 1.0 | isoniazid | Uncertain significance |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 | bedaquiline | Not assoc w R - Interim |
clofazimine | Not assoc w R | |||||
kasA | 2517950 | c.-165C>G | upstream_gene_variant | 0.52 | isoniazid | |
kasA | 2517989 | c.-126T>C | upstream_gene_variant | 0.41 | isoniazid | |
kasA | 2517993 | c.-122G>T | upstream_gene_variant | 0.41 | isoniazid | |
kasA | 2518162 | c.48G>A | synonymous_variant | 0.4 | isoniazid | |
kasA | 2518174 | c.60A>G | synonymous_variant | 0.4 | isoniazid | |
kasA | 2518190 | p.Ser26Ala | missense_variant | 0.53 | isoniazid | |
kasA | 2518199 | p.Ile29Val | missense_variant | 0.53 | isoniazid | |
kasA | 2518220 | c.106C>T | synonymous_variant | 0.47 | isoniazid | |
kasA | 2518747 | c.633C>G | synonymous_variant | 0.43 | isoniazid | |
kasA | 2518768 | c.654C>T | synonymous_variant | 0.5 | isoniazid | |
kasA | 2518777 | c.663C>T | synonymous_variant | 0.47 | isoniazid | |
kasA | 2518783 | c.669T>C | synonymous_variant | 0.47 | isoniazid | |
kasA | 2518789 | c.675G>C | synonymous_variant | 0.44 | isoniazid | |
kasA | 2518792 | c.678C>A | synonymous_variant | 0.47 | isoniazid | |
kasA | 2518795 | c.681C>G | synonymous_variant | 0.47 | isoniazid | |
kasA | 2518825 | c.711T>C | synonymous_variant | 0.62 | isoniazid | |
kasA | 2518864 | c.750G>C | synonymous_variant | 0.47 | isoniazid | |
kasA | 2518879 | c.765A>G | synonymous_variant | 0.5 | isoniazid | |
kasA | 2518885 | c.771T>C | synonymous_variant | 0.47 | isoniazid | |
kasA | 2518898 | c.784T>C | synonymous_variant | 0.37 | isoniazid | |
kasA | 2519107 | c.993T>C | synonymous_variant | 0.4 | isoniazid | |
kasA | 2519108 | p.Asp332Gln | missense_variant | 0.4 | isoniazid | |
kasA | 2519122 | c.1008G>C | synonymous_variant | 0.44 | isoniazid | |
kasA | 2519137 | c.1023T>G | synonymous_variant | 0.5 | isoniazid | |
kasA | 2519158 | c.1044C>T | synonymous_variant | 0.43 | isoniazid | |
kasA | 2519167 | c.1053T>G | synonymous_variant | 0.4 | isoniazid | |
ahpC | 2726657 | c.465A>C | synonymous_variant | 0.53 | isoniazid | Not assoc w R - Interim |
ahpC | 2726669 | p.Asp159Glu | missense_variant | 0.5 | isoniazid | |
ahpC | 2726672 | c.480G>A | synonymous_variant | 0.5 | isoniazid | Not assoc w R - Interim |
ahpC | 2726675 | c.483A>G | synonymous_variant | 0.5 | isoniazid | |
ahpC | 2726681 | c.489A>C | synonymous_variant | 0.47 | isoniazid | Not assoc w R - Interim |
ahpC | 2726687 | c.495C>G | synonymous_variant | 0.5 | isoniazid | |
ahpC | 2726693 | c.501C>G | synonymous_variant | 0.53 | isoniazid | |
ahpC | 2726696 | c.504C>G | synonymous_variant | 0.5 | isoniazid | |
ahpC | 2726717 | c.525A>G | synonymous_variant | 0.4 | isoniazid | |
Rv2477c | 2782957 | c.1086A>G | synonymous_variant | 0.5 | kanamycin | Not assoc w R - Interim |
levofloxacin | Not assoc w R - Interim | |||||
moxifloxacin | Not assoc w R - Interim | |||||
streptomycin | Not assoc w R - Interim | |||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | Not assoc w R - Interim | |||||
amikacin | Not assoc w R - Interim | |||||
Rv2477c | 2782966 | c.1077C>A | synonymous_variant | 0.53 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2782969 | c.1074A>C | synonymous_variant | 0.53 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2782972 | c.1071G>C | synonymous_variant | 0.53 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2782981 | c.1062G>C | synonymous_variant | 0.56 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783149 | c.894G>C | synonymous_variant | 0.47 | kanamycin | Not assoc w R - Interim |
levofloxacin | Not assoc w R - Interim | |||||
moxifloxacin | Not assoc w R - Interim | |||||
streptomycin | ||||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | ||||||
amikacin | Not assoc w R - Interim | |||||
Rv2477c | 2783158 | c.885A>C | synonymous_variant | 0.5 | kanamycin | Not assoc w R - Interim |
levofloxacin | Not assoc w R - Interim | |||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | Not assoc w R - Interim | |||||
amikacin | Not assoc w R - Interim | |||||
Rv2477c | 2783182 | c.861C>G | synonymous_variant | 0.69 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783185 | c.858G>A | synonymous_variant | 0.69 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783194 | c.849A>G | synonymous_variant | 0.6 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783254 | c.789A>G | synonymous_variant | 0.37 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783311 | c.732T>C | synonymous_variant | 0.42 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783314 | c.729C>G | synonymous_variant | 0.47 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | Not assoc w R - Interim | |||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | Not assoc w R - Interim | |||||
amikacin | ||||||
Rv2477c | 2783317 | c.726G>C | synonymous_variant | 0.47 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783332 | c.711T>C | synonymous_variant | 0.5 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783335 | c.708C>G | synonymous_variant | 0.5 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783593 | c.450T>C | synonymous_variant | 0.53 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783605 | c.438T>C | synonymous_variant | 0.43 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783628 | p.Ala139Ser | missense_variant | 0.5 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783656 | c.387G>C | synonymous_variant | 0.47 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783659 | c.384A>G | synonymous_variant | 0.5 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783665 | c.378A>G | synonymous_variant | 0.5 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783674 | c.369T>C | synonymous_variant | 0.59 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783683 | c.360A>G | synonymous_variant | 0.57 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783700 | p.Thr115Ser | missense_variant | 0.57 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783718 | c.325T>C | synonymous_variant | 0.54 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783719 | c.324A>G | synonymous_variant | 0.54 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783751 | p.Ile98Val | missense_variant | 0.65 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783758 | p.Asp95Glu | missense_variant | 0.62 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783761 | c.282G>C | synonymous_variant | 0.59 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783766 | p.Met93Leu | missense_variant | 0.62 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783776 | c.267G>C | synonymous_variant | 0.53 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783779 | c.264T>C | synonymous_variant | 0.44 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783815 | c.228A>G | synonymous_variant | 0.54 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783821 | p.Gln74Leu | missense_variant | 0.54 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783833 | c.210G>C | synonymous_variant | 0.5 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783846 | p.Thr66Asn | missense_variant | 0.53 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783860 | c.183T>C | synonymous_variant | 0.6 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783863 | c.180C>T | synonymous_variant | 0.6 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783883 | c.160T>C | synonymous_variant | 0.69 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783884 | c.159T>C | synonymous_variant | 0.69 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783887 | c.156C>G | synonymous_variant | 0.78 | kanamycin | Not assoc w R - Interim |
levofloxacin | Not assoc w R - Interim | |||||
moxifloxacin | Not assoc w R - Interim | |||||
streptomycin | Not assoc w R - Interim | |||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | Not assoc w R - Interim | |||||
amikacin | Not assoc w R - Interim | |||||
Rv2477c | 2783914 | c.129T>C | synonymous_variant | 0.7 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783920 | c.123G>C | synonymous_variant | 0.7 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783929 | c.114C>G | synonymous_variant | 0.71 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783932 | c.111C>T | synonymous_variant | 0.75 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783938 | c.105T>C | synonymous_variant | 0.71 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783953 | c.90G>A | synonymous_variant | 0.72 | kanamycin | Not assoc w R - Interim |
levofloxacin | Not assoc w R - Interim | |||||
moxifloxacin | Not assoc w R - Interim | |||||
streptomycin | ||||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | Not assoc w R - Interim | |||||
amikacin | Not assoc w R - Interim | |||||
Rv2477c | 2783962 | c.81T>C | synonymous_variant | 0.72 | kanamycin | Not assoc w R - Interim |
levofloxacin | ||||||
moxifloxacin | Not assoc w R - Interim | |||||
streptomycin | Not assoc w R - Interim | |||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | Not assoc w R - Interim | |||||
amikacin | Not assoc w R - Interim | |||||
Rv2477c | 2783971 | c.72G>C | synonymous_variant | 0.62 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783980 | c.63C>G | synonymous_variant | 0.61 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783992 | c.51T>C | synonymous_variant | 0.57 | kanamycin | Not assoc w R - Interim |
levofloxacin | Not assoc w R - Interim | |||||
moxifloxacin | ||||||
streptomycin | Not assoc w R - Interim | |||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | Not assoc w R - Interim | |||||
amikacin | ||||||
Rv2752c | 3066335 | c.-144T>C | upstream_gene_variant | 0.37 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3066339 | c.-148G>C | upstream_gene_variant | 0.39 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
thyX | 3067355 | c.591A>C | synonymous_variant | 0.47 | para-aminosalicylic_acid | |
thyX | 3067367 | c.579G>C | synonymous_variant | 0.55 | para-aminosalicylic_acid | |
thyX | 3067373 | c.573C>G | synonymous_variant | 0.55 | para-aminosalicylic_acid | |
thyX | 3067391 | c.555G>C | synonymous_variant | 0.52 | para-aminosalicylic_acid | |
thyX | 3067394 | c.552G>C | synonymous_variant | 0.54 | para-aminosalicylic_acid | |
thyX | 3067439 | c.507A>G | synonymous_variant | 0.58 | para-aminosalicylic_acid | |
thyX | 3067442 | c.504C>T | synonymous_variant | 0.55 | para-aminosalicylic_acid | |
thyX | 3067445 | c.501C>G | synonymous_variant | 0.55 | para-aminosalicylic_acid | |
thyX | 3067457 | c.489C>G | synonymous_variant | 0.5 | para-aminosalicylic_acid | |
thyX | 3067462 | c.484C>T | synonymous_variant | 0.53 | para-aminosalicylic_acid | |
thyX | 3067490 | c.456C>G | synonymous_variant | 0.5 | para-aminosalicylic_acid | |
thyX | 3067493 | c.453A>G | synonymous_variant | 0.47 | para-aminosalicylic_acid | |
thyX | 3067510 | c.436C>T | synonymous_variant | 0.47 | para-aminosalicylic_acid | |
thyX | 3067515 | p.Ser144Thr | missense_variant | 0.5 | para-aminosalicylic_acid | |
thyX | 3067556 | p.His130Gln | missense_variant | 0.42 | para-aminosalicylic_acid | |
thyX | 3067601 | p.Arg115His | missense_variant | 0.53 | para-aminosalicylic_acid | |
thyX | 3067619 | c.327A>C | synonymous_variant | 0.53 | para-aminosalicylic_acid | |
thyX | 3067631 | c.315C>G | synonymous_variant | 0.62 | para-aminosalicylic_acid | |
thyX | 3067634 | c.312C>G | synonymous_variant | 0.62 | para-aminosalicylic_acid | |
thyX | 3067652 | c.294T>C | synonymous_variant | 0.71 | para-aminosalicylic_acid | |
thyX | 3067661 | c.285C>G | synonymous_variant | 0.76 | para-aminosalicylic_acid | |
thyX | 3067685 | c.261A>C | synonymous_variant | 0.65 | para-aminosalicylic_acid | |
thyX | 3067691 | p.Ile85Leu | missense_variant | 0.58 | para-aminosalicylic_acid | |
thyX | 3067694 | c.252G>C | synonymous_variant | 0.58 | para-aminosalicylic_acid | |
thyX | 3067869 | p.Thr26Ser | missense_variant | 0.46 | para-aminosalicylic_acid | |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 | cycloserine | |
mtrB | 3625065 | p.Met517Leu | missense_variant | 1.0 | rifampicin | Not assoc w R |
bedaquiline | Uncertain significance | |||||
lpqB | 3625714 | c.-804C>T | upstream_gene_variant | 0.53 | rifampicin | |
bedaquiline | ||||||
mtrB | 3625720 | c.894G>C | synonymous_variant | 0.47 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3625729 | c.885A>G | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
lpqB | 3625735 | c.-825C>T | upstream_gene_variant | 0.47 | rifampicin | |
bedaquiline | ||||||
lpqB | 3625749 | c.-839C>T | upstream_gene_variant | 0.47 | rifampicin | |
bedaquiline | ||||||
mtrB | 3625755 | p.Ala287Thr | missense_variant | 0.46 | rifampicin | Uncertain significance |
bedaquiline | ||||||
mtrB | 3625765 | c.849C>G | synonymous_variant | 0.46 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3625774 | c.840G>A | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
lpqB | 3625777 | c.-867C>G | upstream_gene_variant | 0.54 | rifampicin | |
bedaquiline | ||||||
mtrB | 3625797 | p.Val273Met | missense_variant | 0.69 | rifampicin | Uncertain significance |
bedaquiline | Uncertain significance | |||||
mtrB | 3625806 | c.808A>C | synonymous_variant | 0.69 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3625807 | c.807C>G | synonymous_variant | 0.69 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3625837 | c.777C>G | synonymous_variant | 0.91 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
lpqB | 3625843 | c.-933C>G | upstream_gene_variant | 0.83 | rifampicin | |
bedaquiline | ||||||
lpqB | 3625849 | c.-939T>C | upstream_gene_variant | 0.83 | rifampicin | |
bedaquiline | ||||||
mtrB | 3625852 | c.762A>G | synonymous_variant | 0.83 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
lpqB | 3625864 | c.-954T>G | upstream_gene_variant | 0.69 | rifampicin | |
bedaquiline | ||||||
mtrB | 3625876 | c.738G>C | synonymous_variant | 0.6 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrA | 3626759 | c.591T>C | synonymous_variant | 0.62 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3626774 | c.-163_-161delAGGinsCGC | upstream_gene_variant | 0.64 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626783 | c.-170C>G | upstream_gene_variant | 0.64 | rifampicin | |
bedaquiline | ||||||
mtrA | 3626786 | c.564A>G | synonymous_variant | 0.67 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrA | 3626792 | c.558G>T | synonymous_variant | 0.67 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3626795 | c.-182C>T | upstream_gene_variant | 0.68 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626798 | c.-185T>C | upstream_gene_variant | 0.65 | rifampicin | |
bedaquiline | ||||||
mtrA | 3626804 | c.546A>G | synonymous_variant | 0.68 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3626840 | c.-227C>G | upstream_gene_variant | 0.72 | rifampicin | |
bedaquiline | ||||||
mtrA | 3626846 | c.504G>A | synonymous_variant | 0.62 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3626858 | c.-245A>G | upstream_gene_variant | 0.54 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626912 | c.-299T>G | upstream_gene_variant | 0.45 | rifampicin | |
bedaquiline | ||||||
mtrA | 3626939 | c.411A>G | synonymous_variant | 0.36 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3626942 | c.-329A>C | upstream_gene_variant | 0.36 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626945 | c.-332C>T | upstream_gene_variant | 0.38 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626957 | c.-344G>C | upstream_gene_variant | 0.45 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626972 | c.-359A>G | upstream_gene_variant | 0.53 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626987 | c.-374C>G | upstream_gene_variant | 0.53 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627008 | c.-395G>C | upstream_gene_variant | 0.69 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627011 | c.-398T>G | upstream_gene_variant | 0.67 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627056 | c.294C>T | synonymous_variant | 0.6 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627065 | c.-452G>C | upstream_gene_variant | 0.6 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627068 | c.282T>C | synonymous_variant | 0.55 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrA | 3627071 | c.279G>T | synonymous_variant | 0.55 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627074 | c.-461G>C | upstream_gene_variant | 0.55 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627080 | c.270T>C | synonymous_variant | 0.55 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627083 | c.-470G>C | upstream_gene_variant | 0.55 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627098 | c.252A>C | synonymous_variant | 0.55 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627104 | c.-491C>G | upstream_gene_variant | 0.52 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627119 | c.231T>G | synonymous_variant | 0.56 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627122 | c.-509T>C | upstream_gene_variant | 0.54 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627146 | c.204C>T | synonymous_variant | 0.64 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627167 | c.-554T>C | upstream_gene_variant | 0.71 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627181 | c.-568T>C | upstream_gene_variant | 0.68 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627182 | c.-569T>C | upstream_gene_variant | 0.67 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627188 | c.162A>G | synonymous_variant | 0.71 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627209 | c.-596G>A | upstream_gene_variant | 0.74 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627221 | c.129C>T | synonymous_variant | 0.73 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrA | 3627227 | c.123T>C | synonymous_variant | 0.76 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627233 | c.-620T>C | upstream_gene_variant | 0.68 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627236 | c.-623T>C | upstream_gene_variant | 0.68 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627242 | c.108C>T | synonymous_variant | 0.67 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627254 | c.-641C>T | upstream_gene_variant | 0.59 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627263 | c.-650C>T | upstream_gene_variant | 0.58 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627266 | c.-653A>G | upstream_gene_variant | 0.61 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627272 | c.-659G>T | upstream_gene_variant | 0.61 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627275 | c.-662G>T | upstream_gene_variant | 0.65 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627296 | c.-683T>C | upstream_gene_variant | 0.59 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627299 | c.-688_-686delTTGinsCTA | upstream_gene_variant | 0.57 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627314 | c.-701C>T | upstream_gene_variant | 0.5 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627317 | c.-704T>C | upstream_gene_variant | 0.5 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627343 | p.Thr3Ser | missense_variant | 0.47 | rifampicin | |
bedaquiline | ||||||
fbiB | 3642656 | c.1122G>C | synonymous_variant | 0.32 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiB | 3642719 | c.1185T>C | synonymous_variant | 0.55 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
rpoA | 3877515 | c.993G>C | synonymous_variant | 0.35 | rifampicin | |
rpoA | 3877553 | p.Glu319Gln | missense_variant | 0.47 | rifampicin | |
rpoA | 3877571 | p.Pro313Ala | missense_variant | 0.63 | rifampicin | |
rpoA | 3877587 | c.921A>G | synonymous_variant | 0.59 | rifampicin | Not assoc w R - Interim |
rpoA | 3877613 | p.Ile299Val | missense_variant | 0.71 | rifampicin | |
rpoA | 3877656 | c.852T>G | synonymous_variant | 0.71 | rifampicin | Not assoc w R - Interim |
rpoA | 3877668 | c.840A>G | synonymous_variant | 0.75 | rifampicin | |
rpoA | 3877679 | p.Ala277Ser | missense_variant | 0.68 | rifampicin | |
rpoA | 3877686 | c.822A>G | synonymous_variant | 0.73 | rifampicin | Not assoc w R - Interim |
rpoA | 3877692 | c.816G>C | synonymous_variant | 0.71 | rifampicin | Not assoc w R - Interim |
rpoA | 3877704 | c.804G>C | synonymous_variant | 0.7 | rifampicin | |
rpoA | 3877737 | c.771G>C | synonymous_variant | 0.6 | rifampicin | |
rpoA | 3877743 | c.765T>C | synonymous_variant | 0.56 | rifampicin | Not assoc w R - Interim |
rpoA | 3877764 | c.744C>G | synonymous_variant | 0.57 | rifampicin | Not assoc w R - Interim |
rpoA | 3877770 | c.738A>G | synonymous_variant | 0.6 | rifampicin | Not assoc w R - Interim |
rpoA | 3877776 | c.732T>C | synonymous_variant | 0.63 | rifampicin | Not assoc w R - Interim |
rpoA | 3877782 | c.726T>C | synonymous_variant | 0.63 | rifampicin | Not assoc w R - Interim |
rpoA | 3877791 | c.717C>G | synonymous_variant | 0.61 | rifampicin | |
rpoA | 3877818 | c.690A>G | synonymous_variant | 0.67 | rifampicin | Not assoc w R - Interim |
rpoA | 3877839 | c.669G>C | synonymous_variant | 0.63 | rifampicin | Not assoc w R - Interim |
rpoA | 3877848 | c.660C>T | synonymous_variant | 0.68 | rifampicin | Not assoc w R - Interim |
rpoA | 3877857 | c.651G>A | synonymous_variant | 0.7 | rifampicin | |
rpoA | 3877866 | c.642G>C | synonymous_variant | 0.71 | rifampicin | |
rpoA | 3877875 | c.633T>G | synonymous_variant | 0.62 | rifampicin | |
rpoA | 3877878 | c.630G>C | synonymous_variant | 0.59 | rifampicin | |
rpoA | 3877887 | c.621G>C | synonymous_variant | 0.56 | rifampicin | |
rpoA | 3877890 | c.618C>T | synonymous_variant | 0.56 | rifampicin | |
rpoA | 3877896 | c.612G>C | synonymous_variant | 0.62 | rifampicin | |
rpoA | 3877900 | p.Ser203Asn | missense_variant | 0.57 | rifampicin | |
rpoA | 3878022 | c.486T>C | synonymous_variant | 0.6 | rifampicin | |
rpoA | 3878028 | c.480G>C | synonymous_variant | 0.54 | rifampicin | |
rpoA | 3878031 | c.477T>C | synonymous_variant | 0.54 | rifampicin | |
rpoA | 3878226 | c.282C>G | synonymous_variant | 0.31 | rifampicin | |
rpoA | 3878232 | c.276G>C | synonymous_variant | 0.32 | rifampicin | |
rpoA | 3878247 | c.261G>C | synonymous_variant | 0.38 | rifampicin | |
rpoA | 3878271 | c.237T>C | synonymous_variant | 0.46 | rifampicin | Not assoc w R - Interim |
rpoA | 3878284 | p.Glu75Ala | missense_variant | 0.41 | rifampicin | |
rpoA | 3878292 | c.216T>C | synonymous_variant | 0.45 | rifampicin | Not assoc w R - Interim |
rpoA | 3878298 | c.210A>G | synonymous_variant | 0.42 | rifampicin | Not assoc w R - Interim |
rpoA | 3878304 | c.204G>C | synonymous_variant | 0.35 | rifampicin | |
rpoA | 3878385 | c.123C>G | synonymous_variant | 0.43 | rifampicin | |
rpoA | 3878388 | c.120C>G | synonymous_variant | 0.43 | rifampicin | |
rpoA | 3878391 | c.117T>C | synonymous_variant | 0.43 | rifampicin | |
rpoA | 3878415 | c.93C>T | synonymous_variant | 0.55 | rifampicin | |
rpoA | 3878424 | c.84G>C | synonymous_variant | 0.57 | rifampicin | |
rpoA | 3878436 | c.72A>G | synonymous_variant | 0.56 | rifampicin | |
rpoA | 3878878 | c.-371T>C | upstream_gene_variant | 0.5 | rifampicin | Uncertain significance |
rpoA | 3878909 | c.-402A>G | upstream_gene_variant | 0.5 | rifampicin | |
rpoA | 3878914 | c.-407T>C | upstream_gene_variant | 0.42 | rifampicin | Uncertain significance |
rpoA | 3878917 | c.-410G>A | upstream_gene_variant | 0.47 | rifampicin | Uncertain significance |
rpoA | 3879013 | c.-506A>G | upstream_gene_variant | 0.64 | rifampicin | |
rpoA | 3879079 | c.-572A>G | upstream_gene_variant | 0.68 | rifampicin | |
rpoA | 3879088 | c.-581A>C | upstream_gene_variant | 0.72 | rifampicin | |
rpoA | 3879094 | c.-587T>C | upstream_gene_variant | 0.72 | rifampicin | |
rpoA | 3879121 | c.-614T>G | upstream_gene_variant | 0.67 | rifampicin | |
rpoA | 3879127 | c.-620T>C | upstream_gene_variant | 0.67 | rifampicin | |
rpoA | 3879154 | c.-647T>C | upstream_gene_variant | 0.56 | rifampicin | |
clpC1 | 4038239 | c.2466T>C | synonymous_variant | 0.6 | pyrazinamide | |
clpC1 | 4038255 | p.Val817Lys | missense_variant | 0.6 | pyrazinamide | |
clpC1 | 4038271 | p.Pro812Ala | missense_variant | 0.5 | pyrazinamide | |
clpC1 | 4038272 | p.Gly811Ser | missense_variant | 0.5 | pyrazinamide | |
clpC1 | 4038275 | c.2430A>G | synonymous_variant | 0.5 | pyrazinamide | |
clpC1 | 4038278 | c.2427T>C | synonymous_variant | 0.5 | pyrazinamide | |
clpC1 | 4038293 | c.2412G>C | synonymous_variant | 0.63 | pyrazinamide | |
clpC1 | 4038302 | c.2403C>G | synonymous_variant | 0.65 | pyrazinamide | |
clpC1 | 4038308 | c.2397G>T | synonymous_variant | 0.7 | pyrazinamide | |
clpC1 | 4038314 | c.2391T>C | synonymous_variant | 0.67 | pyrazinamide | |
clpC1 | 4038317 | c.2388G>C | synonymous_variant | 0.67 | pyrazinamide | |
clpC1 | 4038320 | c.2385G>T | synonymous_variant | 0.73 | pyrazinamide | |
clpC1 | 4038356 | c.2349T>C | synonymous_variant | 0.73 | pyrazinamide | |
clpC1 | 4038359 | c.2346A>G | synonymous_variant | 0.73 | pyrazinamide | |
clpC1 | 4038368 | c.2337T>C | synonymous_variant | 0.67 | pyrazinamide | |
clpC1 | 4038388 | c.2317T>C | synonymous_variant | 0.67 | pyrazinamide | |
clpC1 | 4038392 | c.2313C>T | synonymous_variant | 0.67 | pyrazinamide | |
clpC1 | 4038398 | c.2307G>T | synonymous_variant | 0.62 | pyrazinamide | |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 0.62 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038407 | c.2298G>C | synonymous_variant | 0.57 | pyrazinamide | |
clpC1 | 4038419 | c.2286T>C | synonymous_variant | 0.54 | pyrazinamide | |
clpC1 | 4038596 | c.2109A>G | synonymous_variant | 0.6 | pyrazinamide | |
clpC1 | 4038623 | c.2082A>G | synonymous_variant | 0.48 | pyrazinamide | |
clpC1 | 4038640 | p.Asp689Asn | missense_variant | 0.41 | pyrazinamide | |
clpC1 | 4038653 | c.2052C>T | synonymous_variant | 0.33 | pyrazinamide | |
clpC1 | 4038658 | p.Lys683Gln | missense_variant | 0.3 | pyrazinamide | |
clpC1 | 4038661 | p.Ser682Thr | missense_variant | 0.29 | pyrazinamide | |
clpC1 | 4038662 | c.2043T>C | synonymous_variant | 0.29 | pyrazinamide | |
clpC1 | 4038671 | c.2034T>C | synonymous_variant | 0.32 | pyrazinamide | |
clpC1 | 4038683 | c.2022T>C | synonymous_variant | 0.3 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038755 | c.1950G>T | synonymous_variant | 0.38 | pyrazinamide | |
clpC1 | 4038770 | c.1935C>T | synonymous_variant | 0.48 | pyrazinamide | |
clpC1 | 4038773 | c.1932T>C | synonymous_variant | 0.45 | pyrazinamide | |
clpC1 | 4038782 | c.1923G>C | synonymous_variant | 0.4 | pyrazinamide | |
clpC1 | 4038812 | c.1893T>C | synonymous_variant | 0.5 | pyrazinamide | |
clpC1 | 4038845 | c.1860G>C | synonymous_variant | 0.54 | pyrazinamide | |
clpC1 | 4038908 | c.1797C>G | synonymous_variant | 0.4 | pyrazinamide | |
clpC1 | 4038914 | c.1791G>C | synonymous_variant | 0.44 | pyrazinamide | |
clpC1 | 4038923 | c.1780_1782delCTAinsTTG | synonymous_variant | 0.5 | pyrazinamide | |
clpC1 | 4038974 | c.1731T>C | synonymous_variant | 0.79 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038989 | c.1716T>C | synonymous_variant | 0.79 | pyrazinamide | |
clpC1 | 4038997 | c.1708T>C | synonymous_variant | 0.82 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039004 | c.1701C>G | synonymous_variant | 0.88 | pyrazinamide | |
clpC1 | 4039022 | c.1683A>G | synonymous_variant | 0.87 | pyrazinamide | |
clpC1 | 4039064 | c.1641C>T | synonymous_variant | 0.76 | pyrazinamide | |
clpC1 | 4039097 | c.1608G>C | synonymous_variant | 0.5 | pyrazinamide | |
clpC1 | 4039142 | c.1563A>G | synonymous_variant | 0.39 | pyrazinamide | |
clpC1 | 4039145 | c.1560G>C | synonymous_variant | 0.38 | pyrazinamide | |
clpC1 | 4039286 | c.1419T>C | synonymous_variant | 0.67 | pyrazinamide | |
clpC1 | 4039295 | c.1410A>C | synonymous_variant | 0.6 | pyrazinamide | |
clpC1 | 4039454 | c.1251A>G | synonymous_variant | 0.44 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039463 | c.1242C>G | synonymous_variant | 0.41 | pyrazinamide | |
clpC1 | 4039466 | c.1239T>C | synonymous_variant | 0.41 | pyrazinamide | |
clpC1 | 4039469 | c.1236T>C | synonymous_variant | 0.41 | pyrazinamide | |
clpC1 | 4039481 | c.1224T>C | synonymous_variant | 0.42 | pyrazinamide | |
clpC1 | 4039484 | c.1221T>C | synonymous_variant | 0.42 | pyrazinamide | |
clpC1 | 4039517 | c.1188C>G | synonymous_variant | 0.4 | pyrazinamide | |
clpC1 | 4039556 | c.1149G>C | synonymous_variant | 0.37 | pyrazinamide | |
clpC1 | 4039559 | c.1146C>G | synonymous_variant | 0.39 | pyrazinamide | |
clpC1 | 4039562 | c.1143C>G | synonymous_variant | 0.39 | pyrazinamide | |
clpC1 | 4039565 | c.1140G>C | synonymous_variant | 0.39 | pyrazinamide | |
clpC1 | 4039570 | p.Met379Leu | missense_variant | 0.35 | pyrazinamide | Uncertain significance |
clpC1 | 4039576 | p.Ala377Pro | missense_variant | 0.33 | pyrazinamide | |
clpC1 | 4039577 | c.1128T>C | synonymous_variant | 0.33 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039589 | c.1116G>C | synonymous_variant | 0.35 | pyrazinamide | |
clpC1 | 4039610 | c.1095G>C | synonymous_variant | 0.42 | pyrazinamide | |
clpC1 | 4039616 | c.1089G>C | synonymous_variant | 0.48 | pyrazinamide | |
clpC1 | 4039622 | c.1083C>T | synonymous_variant | 0.53 | pyrazinamide | |
clpC1 | 4039694 | c.1011G>C | synonymous_variant | 0.71 | pyrazinamide | |
clpC1 | 4039718 | c.987C>A | synonymous_variant | 0.59 | pyrazinamide | |
clpC1 | 4039724 | c.981A>G | synonymous_variant | 0.59 | pyrazinamide | |
clpC1 | 4039751 | c.954A>G | synonymous_variant | 0.56 | pyrazinamide | |
clpC1 | 4039757 | c.948A>G | synonymous_variant | 0.56 | pyrazinamide | |
clpC1 | 4039760 | c.945T>C | synonymous_variant | 0.56 | pyrazinamide | |
clpC1 | 4039766 | c.939T>C | synonymous_variant | 0.56 | pyrazinamide | |
clpC1 | 4039769 | c.936C>G | synonymous_variant | 0.56 | pyrazinamide | |
clpC1 | 4039775 | c.930G>C | synonymous_variant | 0.53 | pyrazinamide | |
clpC1 | 4039778 | c.927A>G | synonymous_variant | 0.5 | pyrazinamide | |
clpC1 | 4039781 | c.924G>C | synonymous_variant | 0.53 | pyrazinamide | |
clpC1 | 4039790 | c.915C>G | synonymous_variant | 0.57 | pyrazinamide | |
clpC1 | 4039817 | c.888A>C | synonymous_variant | 0.53 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039820 | c.885T>G | synonymous_variant | 0.56 | pyrazinamide | |
clpC1 | 4039826 | c.879C>G | synonymous_variant | 0.59 | pyrazinamide | |
clpC1 | 4039831 | c.874T>C | synonymous_variant | 0.61 | pyrazinamide | |
clpC1 | 4039898 | c.807C>G | synonymous_variant | 0.57 | pyrazinamide | |
clpC1 | 4039928 | c.775_777delAGCinsTCG | synonymous_variant | 0.45 | pyrazinamide | |
clpC1 | 4039931 | c.774T>C | synonymous_variant | 0.45 | pyrazinamide | |
clpC1 | 4039937 | c.768G>C | synonymous_variant | 0.48 | pyrazinamide | |
clpC1 | 4039946 | c.759A>C | synonymous_variant | 0.54 | pyrazinamide | |
clpC1 | 4039952 | c.753T>C | synonymous_variant | 0.56 | pyrazinamide | |
clpC1 | 4039979 | c.726C>G | synonymous_variant | 0.52 | pyrazinamide | |
clpC1 | 4039988 | c.717C>G | synonymous_variant | 0.48 | pyrazinamide | |
clpC1 | 4039991 | c.714G>C | synonymous_variant | 0.48 | pyrazinamide | |
clpC1 | 4040090 | c.613_615delTCTinsAGC | synonymous_variant | 0.33 | pyrazinamide | |
clpC1 | 4040105 | c.600C>G | synonymous_variant | 0.47 | pyrazinamide | |
clpC1 | 4040225 | c.480A>C | synonymous_variant | 0.26 | pyrazinamide | |
clpC1 | 4040228 | c.477G>T | synonymous_variant | 0.26 | pyrazinamide | |
clpC1 | 4040237 | c.468C>T | synonymous_variant | 0.29 | pyrazinamide | |
clpC1 | 4040246 | c.459C>G | synonymous_variant | 0.33 | pyrazinamide | |
clpC1 | 4040249 | c.456A>G | synonymous_variant | 0.33 | pyrazinamide | |
clpC1 | 4040267 | c.438A>G | synonymous_variant | 0.45 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4040273 | c.432T>C | synonymous_variant | 0.39 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4040277 | c.427_428delTCinsAG | synonymous_variant | 0.35 | pyrazinamide | |
clpC1 | 4040279 | c.426C>G | synonymous_variant | 0.35 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4040291 | c.414G>C | synonymous_variant | 0.53 | pyrazinamide | |
clpC1 | 4040318 | c.387C>G | synonymous_variant | 0.62 | pyrazinamide | |
clpC1 | 4040321 | c.384C>T | synonymous_variant | 0.6 | pyrazinamide | |
clpC1 | 4040342 | c.363C>G | synonymous_variant | 0.5 | pyrazinamide | |
clpC1 | 4040480 | c.225T>G | synonymous_variant | 0.47 | pyrazinamide | |
glpK | 4138718 | c.1038T>C | synonymous_variant | 0.55 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
glpK | 4138721 | c.1035G>A | synonymous_variant | 0.55 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
isoniazid | Not assoc w R - Interim | |||||
streptomycin | ||||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | Not assoc w R - Interim | |||||
glpK | 4138724 | c.1032A>G | synonymous_variant | 0.55 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
glpK | 4138730 | c.1026C>G | synonymous_variant | 0.58 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
glpK | 4138757 | c.999A>G | synonymous_variant | 0.47 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
glpK | 4138763 | c.993G>A | synonymous_variant | 0.43 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
glpK | 4138769 | c.987G>C | synonymous_variant | 0.4 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
glpK | 4139597 | c.159C>G | synonymous_variant | 0.54 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
glpK | 4139601 | p.Arg52Gln | missense_variant | 0.53 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
glpK | 4139615 | c.141G>A | synonymous_variant | 0.6 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | ||||||
isoniazid | Not assoc w R - Interim | |||||
streptomycin | ||||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | ||||||
glpK | 4139651 | p.His35Glu | missense_variant | 0.56 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
embC | 4242764 | p.Val968Leu | missense_variant | 0.43 | ethambutol | |
embA | 4242772 | c.-461G>C | upstream_gene_variant | 0.46 | ethambutol | |
embC | 4242779 | p.Asn973Asp | missense_variant | 0.5 | ethambutol | |
embA | 4245083 | c.1851A>C | synonymous_variant | 0.42 | ethambutol | |
embA | 4245089 | c.1857G>C | synonymous_variant | 0.48 | ethambutol | |
embA | 4245101 | c.1869G>C | synonymous_variant | 0.56 | ethambutol | |
embA | 4245137 | c.1905T>C | synonymous_variant | 0.64 | ethambutol | |
embA | 4245146 | c.1914G>A | synonymous_variant | 0.59 | ethambutol | |
embA | 4245149 | c.1917C>G | synonymous_variant | 0.57 | ethambutol | |
embA | 4245153 | p.Ile641Val | missense_variant | 0.57 | ethambutol | |
embA | 4245182 | c.1950T>C | synonymous_variant | 0.61 | ethambutol | |
embA | 4245189 | c.1957C>T | synonymous_variant | 0.5 | ethambutol | |
embA | 4245198 | p.Leu656Ile | missense_variant | 0.53 | ethambutol | |
embA | 4245785 | c.2553G>C | synonymous_variant | 0.55 | ethambutol | Not assoc w R - Interim |
embB | 4246292 | c.-222A>G | upstream_gene_variant | 0.47 | ethambutol | |
embB | 4246316 | c.-198T>G | upstream_gene_variant | 0.5 | ethambutol | |
embB | 4246319 | c.-195G>C | upstream_gene_variant | 0.46 | ethambutol | |
embA | 4246329 | p.Thr1033Ala | missense_variant | 0.46 | ethambutol | |
embB | 4247761 | c.1248T>C | synonymous_variant | 0.44 | ethambutol | |
embB | 4247773 | c.1260G>A | synonymous_variant | 0.5 | ethambutol | |
embB | 4247776 | c.1263G>T | synonymous_variant | 0.53 | ethambutol | |
embB | 4247797 | c.1284C>G | synonymous_variant | 0.64 | ethambutol | |
embB | 4247800 | c.1287A>T | synonymous_variant | 0.69 | ethambutol | |
embB | 4247803 | c.1290G>C | synonymous_variant | 0.71 | ethambutol | |
embB | 4247815 | c.1302C>G | synonymous_variant | 0.73 | ethambutol | |
embB | 4247819 | p.Val436Ile | missense_variant | 0.73 | ethambutol | Uncertain significance |
embB | 4247830 | c.1317A>G | synonymous_variant | 0.6 | ethambutol | Not assoc w R - Interim |
embB | 4247836 | c.1323A>G | synonymous_variant | 0.57 | ethambutol | Not assoc w R - Interim |
embB | 4247940 | p.Leu476Trp | missense_variant | 0.42 | ethambutol | |
embB | 4247945 | c.1432T>C | synonymous_variant | 0.39 | ethambutol | |
embB | 4247951 | p.Ser480Ala | missense_variant | 0.41 | ethambutol | |
embB | 4247956 | c.1443G>C | synonymous_variant | 0.37 | ethambutol | Not assoc w R - Interim |
embB | 4247974 | c.1461C>G | synonymous_variant | 0.42 | ethambutol | |
embB | 4249417 | c.2904A>G | synonymous_variant | 0.43 | ethambutol | |
embB | 4249423 | p.Asp970Glu | missense_variant | 0.5 | ethambutol | Uncertain significance |
embB | 4249424 | p.Leu971Met | missense_variant | 0.46 | ethambutol | |
embB | 4249429 | c.2916C>T | synonymous_variant | 0.46 | ethambutol | |
embB | 4249432 | c.2919A>G | synonymous_variant | 0.5 | ethambutol | |
embB | 4249441 | c.2928A>G | synonymous_variant | 0.54 | ethambutol | Not assoc w R - Interim |
embB | 4249444 | c.2931T>C | synonymous_variant | 0.5 | ethambutol | |
embB | 4249469 | p.Leu986Met | missense_variant | 0.69 | ethambutol | |
embB | 4249486 | c.2973T>G | synonymous_variant | 0.57 | ethambutol | |
embB | 4249498 | c.2985G>C | synonymous_variant | 0.54 | ethambutol |