Rv0006 - c.1104C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
12 Sensitive
5 RR-TB
30 HR-TB
11 MDR-TB
2 Pre-XDR-TB
2 XDR-TB
73 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9;lineage6.3 | 5 |
| lineage4.9 | 34 |
| M.canetti;lineage2.2 | 2 |
| 13 | |
| lineage4.1.2.1 | 2 |
| La3;lineage2.1;lineage4.9 | 3 |
| lineage4.1.1.3 | 2 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage2.1;lineage4.9 | 5 |
| La3;lineage4.9 | 6 |
| La2;lineage4.9 | 1 |
| lineage2.2.1 | 9 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1.1.1 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La1.7;lineage4.9 | 4 |
| lineage3 | 1 |
| lineage4.8 | 3 |
| lineage2.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| M.canetti;lineage4.9 | 2 |
| La3 | 2 |
| lineage4.9;lineage7 | 3 |
| lineage3.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.2.1.2 | 1 |
| La2;lineage2.2 | 1 |
| lineage4 | 2 |
| lineage4.1.2 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.6.2.2 | 2 |
| La1;lineage4.9 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage4.2;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La1.8.1 | 1 |
| lineage4.3.4.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.1 | 1 |
| La1.7.1 | 1 |
| lineage6.1.3 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| La1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 135 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR1184372 | MDR-TB | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR1172951 | Other | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4811105 | HR-TB | None | SRR6789626 | Other | None | ERR4810741 | HR-TB | None | ERR4811142 | RR-TB | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR4407452 | Other | lineage3 | None | ERR4817893 | Other | lineage4.8 | None | ERR9117721 | HR-TB | None | SRR29096659 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | ERR3797086 | Sensitive | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR1184381 | MDR-TB | None | ERR212033 | Other | lineage4.9 | None | SRR28119805 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR4817735 | Other | lineage4.8 | None | ERR2027263 | Other | lineage4 | None | SRR29096879 | Sensitive | lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | SRR1196546 | Other | lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR9786525 | Other | lineage4 | None | SRR3675280 | RR-TB | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR23961542 | Other | La1;lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR1184294 | Other | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR9786843 | Other | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR6866807 | Other | lineage4.9 | None | SRR1196566 | Other | lineage4.9 | None | ERR4407463 | HR-TB | None | ERR4819241 | Other | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341373 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR1175074 | Other | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR12015083 | Other | lineage4.8 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR502912 | Other | lineage2.2.1 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR4811075 | Other | None | SRR28119753 | Other | lineage4.9 | None | ERR9786526 | Other | lineage4.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR29093909 | Other | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR1172728 | RR-TB | La3 | None | SRR28119777 | Other | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR176751 | Other | lineage4.9 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR23961549 | Other | La1.2 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR11252664 | Other | lineage2.2.1 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR212001 | HR-TB | None | ERR4817060 | Other | None |
|---|
