TB-Profiler result

Run: ERR550636
Summary

Run ID: ERR550636

Sample name:

Date: 18-08-2022 09:22:52

Number of reads: 1245089

Percentage reads mapped: 79.35

Strain: lineage4.1.1.3

Drug-resistance: MDR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.97
lineage4.1 Euro-American T;X;H None 0.95
lineage4.1.1 Euro-American (X-type) X1;X2;X3 None 0.97
lineage4.1.1.3 Euro-American (X-type) X1;X3 RD193 0.91
lineage3.1.2.2 East-African-Indian CAS RD750 0.06
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761155 p.Ser450Leu missense_variant 0.89 rifampicin
rrs 1472307 n.462C>T non_coding_transcript_exon_variant 0.18 streptomycin
rrs 1472723 n.878G>A non_coding_transcript_exon_variant 0.8 streptomycin
fabG1 1673425 c.-15C>T upstream_gene_variant 1.0 isoniazid, ethionamide
katG 2155168 p.Ser315Thr missense_variant 1.0 isoniazid
pncA 2288782 p.Arg154Gly missense_variant 1.0 pyrazinamide
ald 3087278 c.464delG frameshift_variant 1.0 cycloserine
embA 4243217 c.-16C>G upstream_gene_variant 1.0 ethambutol
embB 4247431 p.Met306Ile missense_variant 0.78 ethambutol
embB 4247448 p.His312Arg missense_variant 0.24 ethambutol
ethA 4326279 c.1192_1194dupGTG conservative_inframe_insertion 0.96 ethionamide
ethA 4326604 c.869dupA frameshift_variant 1.0 ethionamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6178 c.939C>T synonymous_variant 0.25
gyrB 6215 p.Ser326Thr missense_variant 0.33
gyrB 6223 c.984G>C synonymous_variant 0.37
gyrB 6235 c.996C>A synonymous_variant 0.33
gyrB 6238 c.999G>A synonymous_variant 0.35
gyrB 6242 p.Arg335Lys missense_variant 0.37
gyrB 6250 c.1011A>G synonymous_variant 0.38
gyrB 6268 c.1029C>G synonymous_variant 0.34
gyrB 6280 c.1041T>C synonymous_variant 0.4
gyrB 6286 c.1047T>C synonymous_variant 0.38
gyrB 6292 c.1053G>C synonymous_variant 0.36
gyrB 6295 c.1056A>G synonymous_variant 0.35
gyrA 6307 c.-995T>G upstream_gene_variant 0.31
gyrA 6319 c.-983G>C upstream_gene_variant 0.31
gyrA 6325 c.-977C>G upstream_gene_variant 0.28
gyrA 6334 c.-968G>A upstream_gene_variant 0.24
gyrA 6346 c.-956C>G upstream_gene_variant 0.19
gyrA 6361 c.-941G>A upstream_gene_variant 0.15
gyrA 6382 c.-920A>G upstream_gene_variant 0.16
gyrA 6388 c.-914T>C upstream_gene_variant 0.16
gyrA 6406 c.-896C>T upstream_gene_variant 0.14
gyrA 6413 c.-889C>T upstream_gene_variant 0.15
gyrA 6700 c.-602T>C upstream_gene_variant 0.16
gyrA 6703 c.-599G>C upstream_gene_variant 0.15
gyrA 6706 c.-596G>A upstream_gene_variant 0.15
gyrA 6712 c.-590G>C upstream_gene_variant 0.14
gyrA 6745 c.-557T>C upstream_gene_variant 0.17
gyrA 6760 c.-542G>C upstream_gene_variant 0.17
gyrA 6766 c.-536G>C upstream_gene_variant 0.19
gyrA 6775 c.-527G>C upstream_gene_variant 0.2
gyrA 6778 c.-524C>T upstream_gene_variant 0.19
gyrA 6793 c.-509T>C upstream_gene_variant 0.2
gyrB 6794 p.Ile519Leu missense_variant 0.2
gyrB 6797 p.Gly520Thr missense_variant 0.2
gyrA 6811 c.-491C>T upstream_gene_variant 0.19
gyrA 6847 c.-455C>T upstream_gene_variant 0.15
gyrA 6869 c.-433T>C upstream_gene_variant 0.16
gyrA 6872 c.-430T>C upstream_gene_variant 0.16
gyrA 6889 c.-413G>T upstream_gene_variant 0.18
gyrA 6904 c.-398C>G upstream_gene_variant 0.16
gyrA 6910 c.-392G>A upstream_gene_variant 0.15
gyrA 7057 c.-245C>G upstream_gene_variant 0.15
gyrA 7060 c.-242T>C upstream_gene_variant 0.15
gyrA 7066 c.-236G>C upstream_gene_variant 0.17
gyrA 7078 c.-224A>C upstream_gene_variant 0.16
gyrA 7084 c.-218A>G upstream_gene_variant 0.19
gyrA 7090 c.-212C>T upstream_gene_variant 0.17
gyrA 7093 c.-209T>C upstream_gene_variant 0.17
gyrA 7099 c.-203G>A upstream_gene_variant 0.17
gyrA 7108 c.-194G>A upstream_gene_variant 0.19
gyrA 7114 c.-188C>A upstream_gene_variant 0.21
gyrB 7124 p.Ser629Thr missense_variant 0.18
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7427 c.126G>C synonymous_variant 0.18
gyrA 7442 c.141G>C synonymous_variant 0.23
gyrA 7451 c.150C>G synonymous_variant 0.23
gyrA 7457 c.156T>C synonymous_variant 0.23
gyrA 7475 c.174A>G synonymous_variant 0.24
gyrA 7480 p.Phe60Tyr missense_variant 0.24
gyrA 7484 c.183T>C synonymous_variant 0.24
gyrA 7490 c.189C>G synonymous_variant 0.25
gyrA 7523 c.222C>G synonymous_variant 0.19
gyrA 7526 c.225G>T synonymous_variant 0.19
gyrA 7532 c.231T>C synonymous_variant 0.18
gyrA 7541 c.240C>G synonymous_variant 0.18
gyrA 7547 c.246C>T synonymous_variant 0.18
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8267 c.966G>C synonymous_variant 0.18
gyrA 8283 p.Ile328Leu missense_variant 0.16
gyrA 8375 c.1074G>C synonymous_variant 0.15
gyrA 8382 p.Leu361Met missense_variant 0.15
gyrA 8393 c.1092T>C synonymous_variant 0.17
gyrA 8399 c.1098T>C synonymous_variant 0.18
gyrA 8401 p.Asp367Ala missense_variant 0.17
gyrA 8405 c.1104C>T synonymous_variant 0.19
gyrA 8423 c.1122G>C synonymous_variant 0.15
gyrA 8442 c.1141C>T synonymous_variant 0.15
gyrA 8453 c.1152A>C synonymous_variant 0.16
gyrA 8459 c.1158G>A synonymous_variant 0.15
gyrA 8672 c.1371A>G synonymous_variant 0.17
gyrA 8690 c.1389C>G synonymous_variant 0.18
gyrA 8693 c.1392T>C synonymous_variant 0.17
gyrA 8711 c.1410A>C synonymous_variant 0.18
gyrA 8714 c.1413A>G synonymous_variant 0.17
gyrA 8897 c.1596T>C synonymous_variant 0.16
gyrA 8903 c.1602T>C synonymous_variant 0.17
gyrA 8918 c.1617C>T synonymous_variant 0.21
gyrA 8939 c.1638T>C synonymous_variant 0.2
gyrA 8942 c.1641G>C synonymous_variant 0.2
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.22
gyrA 8966 c.1665C>G synonymous_variant 0.24
gyrA 8967 p.Ala556Arg missense_variant 0.24
gyrA 8990 c.1689C>G synonymous_variant 0.19
gyrA 8996 c.1695T>C synonymous_variant 0.18
gyrA 8998 p.Leu566Trp missense_variant 0.16
gyrA 9089 c.1788G>C synonymous_variant 0.14
gyrA 9128 c.1827C>A synonymous_variant 0.18
gyrA 9134 c.1833C>G synonymous_variant 0.17
gyrA 9143 c.1842T>C synonymous_variant 0.17
gyrA 9147 p.Gly616Ser missense_variant 0.17
gyrA 9153 p.Thr618Glu missense_variant 0.17
gyrA 9179 c.1878C>G synonymous_variant 0.21
gyrA 9182 c.1881T>C synonymous_variant 0.22
gyrA 9191 c.1890G>T synonymous_variant 0.22
gyrA 9200 c.1899A>G synonymous_variant 0.22
gyrA 9204 p.Ser635Thr missense_variant 0.21
gyrA 9224 c.1923C>T synonymous_variant 0.22
gyrA 9230 c.1929T>C synonymous_variant 0.22
gyrA 9233 c.1932C>T synonymous_variant 0.2
gyrA 9252 p.Val651Ile missense_variant 0.22
gyrA 9268 p.Asn656Ser missense_variant 0.25
gyrA 9275 c.1974G>A synonymous_variant 0.21
gyrA 9284 c.1983T>C synonymous_variant 0.21
gyrA 9293 c.1992G>C synonymous_variant 0.21
gyrA 9296 c.1995T>C synonymous_variant 0.21
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9308 p.Asp669Glu missense_variant 0.23
gyrA 9315 c.2014C>T synonymous_variant 0.22
gyrA 9335 c.2034G>C synonymous_variant 0.22
gyrA 9345 c.2044A>C synonymous_variant 0.2
gyrA 9365 c.2064G>A synonymous_variant 0.19
gyrA 9374 c.2073G>T synonymous_variant 0.19
gyrA 9377 c.2076A>G synonymous_variant 0.2
gyrA 9383 c.2082T>C synonymous_variant 0.2
gyrA 9386 c.2085T>C synonymous_variant 0.19
gyrA 9395 c.2094G>C synonymous_variant 0.18
gyrA 9398 c.2097T>C synonymous_variant 0.18
mshA 575770 c.423G>A synonymous_variant 0.15
mshA 575771 p.Val142Ser missense_variant 0.15
mshA 575812 c.465C>T synonymous_variant 0.16
mshA 575821 c.474G>C synonymous_variant 0.16
mshA 575824 c.477T>A synonymous_variant 0.18
mshA 575845 c.498C>G synonymous_variant 0.2
mshA 575944 c.597T>C synonymous_variant 0.14
mshA 575953 c.606G>C synonymous_variant 0.14
rpoB 760085 c.279C>T synonymous_variant 0.16
rpoB 760091 c.285G>C synonymous_variant 0.16
rpoB 760100 c.294G>A synonymous_variant 0.18
rpoB 760101 c.295T>C synonymous_variant 0.18
rpoB 760112 c.306T>C synonymous_variant 0.18
rpoB 760118 c.312T>G synonymous_variant 0.18
rpoB 760139 c.333A>G synonymous_variant 0.17
rpoB 760142 c.336C>G synonymous_variant 0.18
rpoB 760181 c.375T>C synonymous_variant 0.24
rpoB 760184 c.378A>G synonymous_variant 0.24
rpoB 760196 c.390C>G synonymous_variant 0.24
rpoB 760235 c.429T>C synonymous_variant 0.2
rpoB 760244 c.438G>C synonymous_variant 0.2
rpoB 760274 c.468G>A synonymous_variant 0.25
rpoB 760283 c.477G>C synonymous_variant 0.26
rpoB 760328 c.522G>C synonymous_variant 0.22
rpoB 760331 c.525G>C synonymous_variant 0.2
rpoB 760337 c.531C>G synonymous_variant 0.19
rpoB 760340 c.534G>C synonymous_variant 0.19
rpoB 760361 c.555T>C synonymous_variant 0.21
rpoB 760370 c.564C>G synonymous_variant 0.2
rpoB 760376 p.Asp190Glu missense_variant 0.2
rpoB 760380 p.Thr192Leu missense_variant 0.2
rpoB 760415 c.609C>T synonymous_variant 0.27
rpoB 760424 c.618C>G synonymous_variant 0.23
rpoB 760430 c.624T>C synonymous_variant 0.24
rpoB 760457 c.651C>G synonymous_variant 0.27
rpoB 760463 c.657C>T synonymous_variant 0.26
rpoB 760475 c.669A>G synonymous_variant 0.27
rpoB 760481 c.675G>C synonymous_variant 0.25
rpoB 760484 c.678A>G synonymous_variant 0.25
rpoB 760487 c.681G>C synonymous_variant 0.26
rpoB 760514 c.708C>T synonymous_variant 0.24
rpoB 760520 c.714C>G synonymous_variant 0.23
rpoB 760522 p.Ser239Asn missense_variant 0.23
rpoB 760532 c.726T>C synonymous_variant 0.23
rpoB 760533 p.Val243Thr missense_variant 0.2
rpoB 760547 c.741G>T synonymous_variant 0.2
rpoB 760563 p.Arg253Met missense_variant 0.15
rpoB 760591 p.Val262Ala missense_variant 0.18
rpoB 760611 c.805T>C synonymous_variant 0.16
rpoB 760646 c.840C>G synonymous_variant 0.17
rpoB 760670 c.864G>C synonymous_variant 0.15
rpoB 760683 c.877T>C synonymous_variant 0.16
rpoB 760751 c.945G>C synonymous_variant 0.14
rpoB 760805 c.999G>C synonymous_variant 0.19
rpoB 760817 c.1011A>G synonymous_variant 0.18
rpoB 760820 c.1014T>C synonymous_variant 0.18
rpoB 760826 c.1020C>G synonymous_variant 0.19
rpoB 760830 c.1024T>C synonymous_variant 0.22
rpoB 760841 c.1035T>C synonymous_variant 0.24
rpoB 760845 p.Thr347Ala missense_variant 0.24
rpoB 760859 c.1053T>C synonymous_variant 0.24
rpoB 760862 c.1056G>C synonymous_variant 0.24
rpoB 760869 p.Val355Ser missense_variant 0.26
rpoB 760886 c.1080A>G synonymous_variant 0.28
rpoB 760919 c.1113C>G synonymous_variant 0.29
rpoB 760925 c.1119T>C synonymous_variant 0.29
rpoB 760928 c.1122G>T synonymous_variant 0.27
rpoB 760931 c.1125C>G synonymous_variant 0.28
rpoB 760946 c.1140A>G synonymous_variant 0.25
rpoB 760973 c.1167G>C synonymous_variant 0.27
rpoB 760982 c.1176G>C synonymous_variant 0.23
rpoB 761006 c.1200C>G synonymous_variant 0.17
rpoB 761015 c.1209G>C synonymous_variant 0.18
rpoB 761021 c.1215G>C synonymous_variant 0.19
rpoB 761027 c.1221A>G synonymous_variant 0.18
rpoB 761036 c.1230G>T synonymous_variant 0.18
rpoB 761037 c.1231T>C synonymous_variant 0.18
rpoB 761057 c.1251G>C synonymous_variant 0.19
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.19
rpoB 761102 c.1296A>G synonymous_variant 0.22
rpoB 761129 c.1323G>C synonymous_variant 0.16
rpoB 761133 c.1327T>C synonymous_variant 0.18
rpoB 761645 c.1839C>G synonymous_variant 0.15
rpoB 761648 c.1842T>C synonymous_variant 0.16
rpoB 761657 c.1851C>G synonymous_variant 0.19
rpoB 761669 c.1863C>T synonymous_variant 0.2
rpoB 761675 c.1869G>C synonymous_variant 0.23
rpoB 761711 c.1905C>G synonymous_variant 0.23
rpoB 761717 c.1911C>G synonymous_variant 0.23
rpoB 761732 c.1926C>G synonymous_variant 0.23
rpoB 761735 c.1929C>G synonymous_variant 0.23
rpoB 761747 c.1941G>C synonymous_variant 0.25
rpoB 761750 c.1944G>C synonymous_variant 0.25
rpoB 761765 c.1959T>C synonymous_variant 0.22
rpoB 761772 p.His656Ala missense_variant 0.22
rpoB 761778 p.Asn658Asp missense_variant 0.21
rpoB 761791 p.Arg662His missense_variant 0.19
rpoB 761813 c.2007T>C synonymous_variant 0.16
rpoB 761815 p.Ala670Glu missense_variant 0.16
rpoB 761969 c.2163G>A synonymous_variant 0.16
rpoB 761999 c.2193G>C synonymous_variant 0.22
rpoB 762008 c.2202C>G synonymous_variant 0.21
rpoB 762014 c.2208C>T synonymous_variant 0.23
rpoB 762017 c.2211A>G synonymous_variant 0.22
rpoB 762053 c.2247T>C synonymous_variant 0.23
rpoB 762062 c.2256T>C synonymous_variant 0.24
rpoB 762065 c.2259T>C synonymous_variant 0.24
rpoB 762083 c.2277T>C synonymous_variant 0.23
rpoB 762086 c.2280G>C synonymous_variant 0.22
rpoB 762101 c.2295C>G synonymous_variant 0.25
rpoB 762114 p.Ile770Val missense_variant 0.23
rpoB 762131 c.2325C>G synonymous_variant 0.23
rpoB 762143 c.2337T>C synonymous_variant 0.21
rpoB 762149 c.2343G>C synonymous_variant 0.22
rpoB 762176 c.2370T>C synonymous_variant 0.22
rpoB 762185 c.2379G>C synonymous_variant 0.21
rpoB 762233 c.2427G>C synonymous_variant 0.24
rpoB 762254 c.2448T>C synonymous_variant 0.19
rpoB 762257 c.2451C>G synonymous_variant 0.19
rpoB 762266 c.2460T>C synonymous_variant 0.22
rpoB 762284 c.2478G>C synonymous_variant 0.2
rpoB 762285 p.Arg827Cys missense_variant 0.8
rpoB 762293 c.2487T>C synonymous_variant 0.2
rpoB 762296 c.2490G>C synonymous_variant 0.17
rpoB 762317 c.2511A>G synonymous_variant 0.16
rpoB 762338 c.2532T>C synonymous_variant 0.17
rpoB 762347 c.2541T>C synonymous_variant 0.2
rpoB 762362 p.Glu852Asp missense_variant 0.2
rpoB 762369 c.2563T>C synonymous_variant 0.22
rpoC 762398 c.-972T>C upstream_gene_variant 0.19
rpoC 762407 c.-963G>A upstream_gene_variant 0.22
rpoC 762410 c.-960T>C upstream_gene_variant 0.22
rpoC 762416 c.-954A>G upstream_gene_variant 0.19
rpoC 762434 c.-936T>C upstream_gene_variant 0.24
rpoC 762443 c.-927G>C upstream_gene_variant 0.21
rpoC 762449 c.-921C>A upstream_gene_variant 0.2
rpoC 762452 c.-918G>C upstream_gene_variant 0.19
rpoC 762470 c.-900G>C upstream_gene_variant 0.19
rpoC 762758 c.-612G>C upstream_gene_variant 0.15
rpoB 762789 p.Leu995Met missense_variant 0.14
rpoB 762795 p.Asp997Asn missense_variant 0.14
rpoC 762836 c.-534C>T upstream_gene_variant 0.15
rpoC 762857 c.-513C>G upstream_gene_variant 0.16
rpoC 762860 c.-510G>C upstream_gene_variant 0.16
rpoC 762863 c.-507T>C upstream_gene_variant 0.17
rpoC 762920 c.-450C>T upstream_gene_variant 0.21
rpoC 762929 c.-441G>T upstream_gene_variant 0.21
rpoC 762947 c.-423C>G upstream_gene_variant 0.24
rpoC 762962 c.-408C>T upstream_gene_variant 0.23
rpoC 762989 c.-381G>C upstream_gene_variant 0.24
rpoC 762995 c.-375G>T upstream_gene_variant 0.21
rpoC 763028 c.-342T>C upstream_gene_variant 0.2
rpoC 763031 c.-339T>G upstream_gene_variant 0.2
rpoC 763034 c.-336C>G upstream_gene_variant 0.19
rpoC 763040 c.-330C>G upstream_gene_variant 0.15
rpoC 763115 c.-255T>C upstream_gene_variant 0.16
rpoC 763148 c.-222G>C upstream_gene_variant 0.16
rpoC 763158 c.-212C>T upstream_gene_variant 0.16
rpoC 763166 c.-204A>G upstream_gene_variant 0.16
rpoC 763205 c.-165G>C upstream_gene_variant 0.16
rpoC 763206 c.-164_-162delAGTinsTCG upstream_gene_variant 0.17
rpoC 763238 c.-132T>C upstream_gene_variant 0.15
rpoC 763441 c.72C>T synonymous_variant 0.17
rpoC 763444 c.75T>C synonymous_variant 0.17
rpoC 763456 c.87A>G synonymous_variant 0.22
rpoC 763486 c.117T>G synonymous_variant 0.25
rpoC 763528 c.159G>A synonymous_variant 0.33
rpoC 763546 c.177A>G synonymous_variant 0.31
rpoC 763570 c.201G>T synonymous_variant 0.24
rpoC 763573 c.204G>C synonymous_variant 0.23
rpoC 763576 c.207C>G synonymous_variant 0.23
rpoC 763594 c.225C>T synonymous_variant 0.2
rpoC 763624 c.255C>G synonymous_variant 0.19
rpoC 763636 c.267T>C synonymous_variant 0.25
rpoC 763660 c.291T>G synonymous_variant 0.21
rpoC 763675 c.306C>G synonymous_variant 0.19
rpoC 763702 c.333C>G synonymous_variant 0.18
rpoC 763714 c.345G>C synonymous_variant 0.17
rpoC 763717 c.348T>C synonymous_variant 0.17
rpoC 763723 c.354G>C synonymous_variant 0.17
rpoC 763732 c.363C>G synonymous_variant 0.16
rpoC 763741 c.372C>T synonymous_variant 0.17
rpoC 763744 c.375G>C synonymous_variant 0.17
rpoC 763774 c.405G>C synonymous_variant 0.16
rpoC 764140 c.771C>T synonymous_variant 0.17
rpoC 764188 c.819A>G synonymous_variant 0.19
rpoC 764203 c.834G>T synonymous_variant 0.15
rpoC 764206 c.837T>C synonymous_variant 0.15
rpoC 764213 p.Arg282Lys missense_variant 0.15
rpoC 764257 c.888G>C synonymous_variant 0.2
rpoC 764266 c.897T>C synonymous_variant 0.19
rpoC 764269 c.900G>C synonymous_variant 0.19
rpoC 764278 c.909A>G synonymous_variant 0.19
rpoC 764317 c.948C>G synonymous_variant 0.19
rpoC 764320 c.951C>G synonymous_variant 0.2
rpoC 764338 c.969G>A synonymous_variant 0.17
rpoC 764365 c.996C>T synonymous_variant 0.25
rpoC 764383 c.1014C>G synonymous_variant 0.23
rpoC 764387 c.1018T>C synonymous_variant 0.24
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.17
rpoC 764419 c.1050C>G synonymous_variant 0.28
rpoC 764428 c.1059G>C synonymous_variant 0.34
rpoC 764431 c.1062G>C synonymous_variant 0.33
rpoC 764434 c.1065A>G synonymous_variant 0.33
rpoC 764446 c.1077T>C synonymous_variant 0.3
rpoC 764449 c.1080G>C synonymous_variant 0.3
rpoC 764452 c.1083T>C synonymous_variant 0.32
rpoC 764458 c.1089G>C synonymous_variant 0.3
rpoC 764461 c.1092A>G synonymous_variant 0.33
rpoC 764497 c.1128A>G synonymous_variant 0.31
rpoC 764521 c.1152T>C synonymous_variant 0.26
rpoC 764536 c.1167G>C synonymous_variant 0.26
rpoC 764539 c.1170C>G synonymous_variant 0.24
rpoC 764554 c.1185C>T synonymous_variant 0.21
rpoC 764560 c.1191T>C synonymous_variant 0.15
rpoC 764566 c.1197C>G synonymous_variant 0.17
rpoC 764593 c.1224C>T synonymous_variant 0.15
rpoC 764632 c.1263T>C synonymous_variant 0.15
rpoC 764650 c.1281G>T synonymous_variant 0.17
rpoC 764668 c.1299C>T synonymous_variant 0.23
rpoC 764752 c.1383G>C synonymous_variant 0.31
rpoC 764764 c.1395T>C synonymous_variant 0.33
rpoC 764803 c.1434C>T synonymous_variant 0.32
rpoC 764809 c.1440C>T synonymous_variant 0.3
rpoC 764815 c.1446A>G synonymous_variant 0.3
rpoC 764827 c.1458G>C synonymous_variant 0.33
rpoC 764858 c.1489T>C synonymous_variant 0.36
rpoC 764888 c.1519T>C synonymous_variant 0.35
rpoC 764932 c.1563C>G synonymous_variant 0.26
rpoC 764935 c.1566T>C synonymous_variant 0.26
rpoC 764948 c.1579T>C synonymous_variant 0.25
rpoC 764968 c.1599T>C synonymous_variant 0.22
rpoC 764995 c.1626C>G synonymous_variant 0.18
rpoC 765007 c.1638T>G synonymous_variant 0.17
rpoC 765008 c.1639T>C synonymous_variant 0.17
rpoC 765019 c.1650A>G synonymous_variant 0.16
rpoC 765150 p.Gly594Glu missense_variant 1.0
rpoC 765370 c.2001G>T synonymous_variant 0.16
rpoC 765371 c.2002C>T synonymous_variant 0.16
rpoC 765379 c.2010G>T synonymous_variant 0.17
rpoC 765383 p.Met672Leu missense_variant 0.18
rpoC 765394 c.2025G>A synonymous_variant 0.2
rpoC 765404 p.Leu679Val missense_variant 0.2
rpoC 765409 c.2040T>C synonymous_variant 0.19
rpoC 765412 c.2043T>C synonymous_variant 0.2
rpoC 765421 c.2052C>G synonymous_variant 0.16
rpoC 765466 c.2097C>T synonymous_variant 0.18
rpoC 765478 c.2109T>C synonymous_variant 0.19
rpoC 765499 c.2130C>G synonymous_variant 0.17
rpoC 765508 c.2139C>G synonymous_variant 0.22
rpoC 765529 c.2160C>T synonymous_variant 0.23
rpoC 765541 c.2172C>G synonymous_variant 0.23
rpoC 765553 c.2184C>T synonymous_variant 0.28
rpoC 765556 c.2187G>C synonymous_variant 0.28
rpoC 765562 c.2193G>C synonymous_variant 0.29
rpoC 765580 c.2211G>C synonymous_variant 0.28
rpoC 765583 c.2214G>C synonymous_variant 0.25
rpoC 765613 p.His748Gln missense_variant 0.3
rpoC 765625 c.2256C>G synonymous_variant 0.3
rpoC 765628 c.2259G>C synonymous_variant 0.31
rpoC 765631 p.Asp754Glu missense_variant 0.3
rpoC 765658 c.2289C>T synonymous_variant 0.26
rpoC 765688 c.2319G>A synonymous_variant 0.28
rpoC 765700 c.2331T>C synonymous_variant 0.25
rpoC 765734 c.2365T>C synonymous_variant 0.24
rpoC 765739 c.2370G>T synonymous_variant 0.27
rpoC 765751 c.2382C>G synonymous_variant 0.3
rpoC 765753 p.Asp795Ala missense_variant 0.29
rpoC 765772 c.2403C>G synonymous_variant 0.25
rpoC 765778 c.2409C>G synonymous_variant 0.27
rpoC 765784 c.2415C>G synonymous_variant 0.27
rpoC 765793 c.2424C>G synonymous_variant 0.28
rpoC 765796 c.2427C>T synonymous_variant 0.28
rpoC 765811 c.2442T>G synonymous_variant 0.25
rpoC 765826 c.2457T>C synonymous_variant 0.22
rpoC 765886 c.2517C>G synonymous_variant 0.18
rpoC 765967 c.2598C>T synonymous_variant 0.16
rpoC 765979 c.2610C>G synonymous_variant 0.18
rpoC 765982 c.2613C>T synonymous_variant 0.18
rpoC 765994 c.2625A>T synonymous_variant 0.2
rpoC 766000 c.2631G>T synonymous_variant 0.17
rpoC 766009 c.2640G>C synonymous_variant 0.17
rpoC 766010 c.2641_2642delTCinsAG synonymous_variant 0.17
rpoC 766054 c.2685C>G synonymous_variant 0.14
rpoC 766270 c.2901G>A synonymous_variant 0.13
rpoC 766274 p.Ala969Thr missense_variant 0.13
rpoC 766294 c.2925C>T synonymous_variant 0.17
rpoC 766303 c.2934C>T synonymous_variant 0.17
rpoC 766312 c.2943T>G synonymous_variant 0.19
rpoC 766345 c.2976T>C synonymous_variant 0.21
rpoC 766348 c.2979A>G synonymous_variant 0.21
rpoC 766357 c.2988C>T synonymous_variant 0.16
rpoC 766363 c.2994G>C synonymous_variant 0.16
rpoC 766366 c.2997C>G synonymous_variant 0.16
rpoC 766369 c.3000C>G synonymous_variant 0.16
rpoC 766381 c.3012C>T synonymous_variant 0.17
rpoC 766384 c.3015A>G synonymous_variant 0.17
rpoC 766387 c.3018C>G synonymous_variant 0.18
rpoC 766390 c.3021C>T synonymous_variant 0.16
rpoC 766408 c.3039C>T synonymous_variant 0.14
rpoC 766573 c.3204T>C synonymous_variant 0.16
rpoC 766583 p.Gly1072Ser missense_variant 0.16
rpoC 766588 c.3219G>A synonymous_variant 0.16
rpoC 766591 c.3222A>G synonymous_variant 0.16
rpoC 766594 c.3225G>C synonymous_variant 0.19
rpoC 766597 c.3228C>G synonymous_variant 0.19
rpoC 766607 p.Ile1080Leu missense_variant 0.22
rpoC 766630 c.3261G>T synonymous_variant 0.17
rpoC 766657 c.3288A>G synonymous_variant 0.21
rpoC 766666 c.3297C>G synonymous_variant 0.21
rpoC 766672 c.3303T>C synonymous_variant 0.23
rpoC 766693 c.3324C>T synonymous_variant 0.21
rpoC 766726 c.3357T>C synonymous_variant 0.17
rpoC 766738 c.3369G>C synonymous_variant 0.17
rpoC 766765 c.3396A>C synonymous_variant 0.17
rpoC 766774 c.3405T>C synonymous_variant 0.25
rpoC 766801 c.3432C>A synonymous_variant 0.24
rpoC 766804 c.3435A>G synonymous_variant 0.25
rpoC 766861 c.3492G>C synonymous_variant 0.29
rpoC 766864 c.3495G>C synonymous_variant 0.29
rpoC 766894 c.3525T>C synonymous_variant 0.36
rpoC 766895 c.3526T>C synonymous_variant 0.34
rpoC 766900 c.3531T>C synonymous_variant 0.33
rpoC 766918 c.3549C>T synonymous_variant 0.32
rpoC 766933 c.3564A>G synonymous_variant 0.28
rpoC 766945 c.3576A>G synonymous_variant 0.27
rpoC 766951 c.3582G>C synonymous_variant 0.25
rpoC 766963 c.3594T>C synonymous_variant 0.29
rpoC 766978 c.3609C>A synonymous_variant 0.3
rpoC 766996 c.3627C>T synonymous_variant 0.28
rpoC 767033 c.3664_3666delTCGinsAGT synonymous_variant 0.29
rpoC 767059 c.3690T>G synonymous_variant 0.25
rpoC 767062 c.3693C>A synonymous_variant 0.26
rpoC 767065 c.3696G>T synonymous_variant 0.28
rpoC 767098 c.3729T>C synonymous_variant 0.23
rpoC 767119 c.3750A>G synonymous_variant 0.24
rpoC 767134 c.3765C>A synonymous_variant 0.23
rpoC 767167 c.3798C>G synonymous_variant 0.21
rpoC 767180 p.Ala1271Gln missense_variant 0.19
rpoC 767191 c.3822C>G synonymous_variant 0.18
rpoC 767206 c.3837C>G synonymous_variant 0.18
rpoC 767209 c.3840T>C synonymous_variant 0.18
rpoC 767212 c.3843G>C synonymous_variant 0.17
rpoC 767221 c.3852C>G synonymous_variant 0.17
rpoC 767233 c.3864T>C synonymous_variant 0.15
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781435 c.-125G>C upstream_gene_variant 1.0
rpsL 781679 c.120C>T synonymous_variant 0.19
rpsL 781682 c.123T>C synonymous_variant 0.19
rpsL 781712 c.153G>A synonymous_variant 0.19
rpsL 781715 c.156T>C synonymous_variant 0.19
rpsL 781718 c.159C>A synonymous_variant 0.19
rpsL 781728 c.169T>C synonymous_variant 0.21
rpsL 781736 c.177T>C synonymous_variant 0.22
rpsL 781742 c.183C>T synonymous_variant 0.23
rpsL 781751 c.192G>C synonymous_variant 0.25
rpsL 781754 c.195G>C synonymous_variant 0.25
rpsL 781760 c.201T>C synonymous_variant 0.25
rpsL 781814 c.255C>T synonymous_variant 0.25
rpsL 781817 c.258G>T synonymous_variant 0.25
rpsL 781832 c.273T>C synonymous_variant 0.26
rpsL 781838 c.279G>C synonymous_variant 0.27
rpsL 781841 c.282C>G synonymous_variant 0.28
rpsL 781865 c.306G>C synonymous_variant 0.24
rpsL 781868 c.309T>C synonymous_variant 0.23
rpsL 781871 c.312G>C synonymous_variant 0.23
rpsL 781892 c.333A>G synonymous_variant 0.17
rpsL 781898 c.339A>T synonymous_variant 0.15
rpsL 781929 p.Gly124Ser missense_variant 0.14
rplC 800612 c.-197A>G upstream_gene_variant 0.15
rplC 800654 c.-155T>C upstream_gene_variant 0.14
fbiC 1303539 c.609G>A synonymous_variant 0.13
fbiC 1304817 c.1887T>C synonymous_variant 0.17
fbiC 1304832 c.1902C>G synonymous_variant 0.18
fbiC 1304853 c.1923C>T synonymous_variant 0.17
fbiC 1304856 c.1926C>G synonymous_variant 0.17
fbiC 1304869 c.1939C>T synonymous_variant 0.2
fbiC 1304880 c.1950C>T synonymous_variant 0.18
fbiC 1304893 p.Gly655Ser missense_variant 0.18
atpE 1461086 c.42A>C synonymous_variant 0.14
atpE 1461097 p.Ala18Gly missense_variant 0.19
atpE 1461101 c.57T>C synonymous_variant 0.22
atpE 1461107 c.63C>G synonymous_variant 0.25
atpE 1461119 c.75T>C synonymous_variant 0.26
atpE 1461132 p.Val30Ile missense_variant 0.28
atpE 1461149 c.105T>G synonymous_variant 0.26
atpE 1461150 p.Ile36Val missense_variant 0.26
atpE 1461155 c.111C>G synonymous_variant 0.26
atpE 1461159 p.Val39Ile missense_variant 0.26
atpE 1461182 c.138A>G synonymous_variant 0.23
atpE 1461185 c.141G>C synonymous_variant 0.23
atpE 1461197 c.153A>G synonymous_variant 0.21
atpE 1461212 c.168C>G synonymous_variant 0.2
atpE 1461219 c.175T>C synonymous_variant 0.2
atpE 1461224 c.180T>C synonymous_variant 0.18
atpE 1461233 c.189A>C synonymous_variant 0.18
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471969 n.124T>C non_coding_transcript_exon_variant 0.16
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.15
rrs 1472028 n.183A>T non_coding_transcript_exon_variant 0.23
rrs 1472029 n.184C>T non_coding_transcript_exon_variant 0.23
rrs 1472030 n.185G>T non_coding_transcript_exon_variant 0.23
rrs 1472031 n.186G>A non_coding_transcript_exon_variant 0.24
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 0.23
rrs 1472044 n.199G>T non_coding_transcript_exon_variant 0.23
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.23
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.22
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.23
rrs 1472300 n.455C>T non_coding_transcript_exon_variant 0.17
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.25
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.25
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.26
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.26
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.16
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.16
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.21
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.23
rrs 1473288 n.1443C>T non_coding_transcript_exon_variant 0.24
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.24
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 0.24
rrl 1473668 n.11C>T non_coding_transcript_exon_variant 0.12
rrl 1473756 n.99G>A non_coding_transcript_exon_variant 0.22
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.24
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.28
rrl 1473813 n.156C>T non_coding_transcript_exon_variant 0.27
rrl 1473831 n.174G>A non_coding_transcript_exon_variant 0.29
rrl 1473839 n.182G>T non_coding_transcript_exon_variant 0.31
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.32
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.29
rrl 1473899 n.242A>C non_coding_transcript_exon_variant 0.29
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.25
rrl 1473944 n.287G>A non_coding_transcript_exon_variant 0.24
rrl 1473966 n.309T>C non_coding_transcript_exon_variant 0.26
rrl 1473971 n.314G>T non_coding_transcript_exon_variant 0.25
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.27
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.26
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.26
rrl 1474012 n.355C>T non_coding_transcript_exon_variant 0.25
rrl 1474036 n.379G>A non_coding_transcript_exon_variant 0.28
rrl 1474054 n.397T>C non_coding_transcript_exon_variant 0.29
rrl 1474093 n.436G>T non_coding_transcript_exon_variant 0.28
rrl 1474099 n.442G>A non_coding_transcript_exon_variant 0.26
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.26
rrl 1474111 n.454T>C non_coding_transcript_exon_variant 0.29
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.27
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.26
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.21
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.19
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.15
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.15
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.28
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.23
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.23
rrl 1474823 n.1166C>T non_coding_transcript_exon_variant 0.22
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.24
rrl 1474904 n.1247G>A non_coding_transcript_exon_variant 0.25
rrl 1474956 n.1299C>T non_coding_transcript_exon_variant 0.35
rrl 1474961 n.1304T>G non_coding_transcript_exon_variant 0.33
rrl 1474963 n.1306G>A non_coding_transcript_exon_variant 0.33
rrl 1474964 n.1307T>C non_coding_transcript_exon_variant 0.35
rrl 1474970 n.1313G>A non_coding_transcript_exon_variant 0.38
rrl 1475006 n.1349A>T non_coding_transcript_exon_variant 0.39
rrl 1475013 n.1356G>A non_coding_transcript_exon_variant 0.39
rrl 1475028 n.1371G>A non_coding_transcript_exon_variant 0.38
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.32
rrl 1475088 n.1431A>T non_coding_transcript_exon_variant 0.27
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.16
rrl 1475201 n.1544G>A non_coding_transcript_exon_variant 0.16
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.17
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 0.16
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.16
rrl 1475249 n.1592T>C non_coding_transcript_exon_variant 0.25
rrl 1475252 n.1595C>T non_coding_transcript_exon_variant 0.23
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 0.23
rrl 1475267 n.1610G>A non_coding_transcript_exon_variant 0.23
rrl 1475275 n.1618C>T non_coding_transcript_exon_variant 0.23
rrl 1475276 n.1619T>C non_coding_transcript_exon_variant 0.24
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.27
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.35
rrl 1475333 n.1676T>C non_coding_transcript_exon_variant 0.34
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.34
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.36
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.3
rrl 1475409 n.1752T>C non_coding_transcript_exon_variant 0.28
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.28
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.25
rrl 1475446 n.1789G>A non_coding_transcript_exon_variant 0.22
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.23
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.22
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.22
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.31
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.3
rrl 1475638 n.1981C>T non_coding_transcript_exon_variant 0.32
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.33
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.32
rrl 1475659 n.2002G>T non_coding_transcript_exon_variant 0.32
rrl 1475765 n.2111delG non_coding_transcript_exon_variant 0.19
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.2
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.18
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.18
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.18
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.24
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.26
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.26
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 0.26
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.19
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.19
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.22
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.23
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.2
inhA 1674486 c.285T>C synonymous_variant 0.16
inhA 1674489 c.288G>T synonymous_variant 0.15
rpsA 1833667 c.126C>G synonymous_variant 0.21
rpsA 1833703 c.162C>T synonymous_variant 0.17
rpsA 1833724 c.183C>G synonymous_variant 0.17
rpsA 1833727 c.186G>C synonymous_variant 0.17
rpsA 1833745 c.204G>C synonymous_variant 0.17
rpsA 1833760 c.219C>T synonymous_variant 0.18
rpsA 1833793 c.252C>T synonymous_variant 0.15
rpsA 1833835 c.294C>T synonymous_variant 0.19
rpsA 1833838 c.297G>C synonymous_variant 0.19
rpsA 1833841 c.300C>G synonymous_variant 0.19
rpsA 1833856 c.315A>G synonymous_variant 0.18
rpsA 1833874 c.333T>C synonymous_variant 0.19
rpsA 1833928 c.387G>C synonymous_variant 0.19
rpsA 1833940 c.399C>G synonymous_variant 0.21
rpsA 1833971 c.430C>T synonymous_variant 0.21
rpsA 1833976 c.435C>T synonymous_variant 0.18
rpsA 1833979 c.438T>C synonymous_variant 0.17
rpsA 1834000 c.459G>C synonymous_variant 0.18
rpsA 1834021 c.480C>T synonymous_variant 0.18
rpsA 1834030 c.489C>G synonymous_variant 0.16
rpsA 1834249 c.708T>C synonymous_variant 0.16
rpsA 1834345 c.804C>T synonymous_variant 0.15
rpsA 1834348 c.807T>C synonymous_variant 0.17
rpsA 1834366 c.825A>G synonymous_variant 0.17
rpsA 1834369 c.828C>G synonymous_variant 0.18
rpsA 1834396 c.855G>C synonymous_variant 0.18
rpsA 1834411 c.870T>C synonymous_variant 0.19
rpsA 1834417 c.876G>C synonymous_variant 0.2
rpsA 1834423 c.882G>C synonymous_variant 0.21
rpsA 1834435 c.894G>C synonymous_variant 0.25
rpsA 1834451 c.910T>C synonymous_variant 0.29
rpsA 1834468 c.927A>G synonymous_variant 0.28
rpsA 1834474 c.933C>G synonymous_variant 0.28
rpsA 1834477 c.936C>T synonymous_variant 0.29
rpsA 1834489 c.948T>C synonymous_variant 0.25
rpsA 1834495 c.954G>A synonymous_variant 0.24
rpsA 1834498 c.957C>T synonymous_variant 0.24
rpsA 1834528 c.987T>C synonymous_variant 0.29
rpsA 1834546 c.1005T>C synonymous_variant 0.25
rpsA 1834558 c.1017C>G synonymous_variant 0.26
rpsA 1834609 c.1068T>C synonymous_variant 0.17
rpsA 1834633 c.1092A>G synonymous_variant 0.19
rpsA 1834639 c.1098T>C synonymous_variant 0.18
rpsA 1834654 p.Glu371Asp missense_variant 0.17
rpsA 1834690 c.1149T>C synonymous_variant 0.19
rpsA 1834732 c.1191T>C synonymous_variant 0.17
rpsA 1834733 p.Ala398Ser missense_variant 0.15
rpsA 1834738 c.1197A>G synonymous_variant 0.17
rpsA 1834753 c.1212T>C synonymous_variant 0.17
rpsA 1834759 c.1218A>C synonymous_variant 0.18
rpsA 1834775 p.Ala412Asn missense_variant 0.16
rpsA 1834789 c.1248T>C synonymous_variant 0.16
rpsA 1834792 c.1251G>C synonymous_variant 0.16
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1918029 c.90C>G synonymous_variant 0.15
tlyA 1918036 p.Arg33Ser missense_variant 0.17
kasA 2517917 c.-198G>T upstream_gene_variant 0.16
kasA 2518483 c.369C>T synonymous_variant 0.15
kasA 2518488 p.Ser125Thr missense_variant 0.17
kasA 2518504 c.390T>C synonymous_variant 0.17
kasA 2518506 p.Ala131Glu missense_variant 0.17
kasA 2518510 c.396C>T synonymous_variant 0.17
kasA 2518519 c.405G>C synonymous_variant 0.17
kasA 2518528 c.414C>G synonymous_variant 0.19
kasA 2518534 c.420G>C synonymous_variant 0.2
kasA 2518561 c.447T>C synonymous_variant 0.16
kasA 2518574 p.Ile154Val missense_variant 0.18
kasA 2518579 c.465T>C synonymous_variant 0.17
kasA 2518588 c.474T>C synonymous_variant 0.18
kasA 2518591 c.477G>C synonymous_variant 0.18
kasA 2518606 c.492G>C synonymous_variant 0.2
kasA 2518609 p.Met165Ile missense_variant 0.21
kasA 2518618 c.504G>T synonymous_variant 0.19
kasA 2518621 c.507G>C synonymous_variant 0.2
kasA 2518627 c.513T>C synonymous_variant 0.18
kasA 2518636 c.522C>T synonymous_variant 0.21
kasA 2518642 c.528A>G synonymous_variant 0.21
kasA 2518672 c.558G>C synonymous_variant 0.18
kasA 2518678 c.564C>T synonymous_variant 0.19
kasA 2518684 c.570C>G synonymous_variant 0.15
kasA 2518688 p.Val192Phe missense_variant 0.16
kasA 2518702 c.588C>T synonymous_variant 0.15
kasA 2518705 c.591T>G synonymous_variant 0.18
kasA 2518711 c.597A>G synonymous_variant 0.2
kasA 2518714 c.600A>C synonymous_variant 0.18
kasA 2518747 c.633C>G synonymous_variant 0.28
kasA 2518768 c.654C>G synonymous_variant 0.28
kasA 2518783 c.669T>C synonymous_variant 0.27
kasA 2518789 c.675G>C synonymous_variant 0.24
kasA 2518792 c.678C>A synonymous_variant 0.23
kasA 2518795 c.681C>G synonymous_variant 0.21
kasA 2518825 c.711T>C synonymous_variant 0.19
kasA 2518834 c.720C>T synonymous_variant 0.17
kasA 2518837 c.723G>A synonymous_variant 0.17
kasA 2518846 c.732G>C synonymous_variant 0.17
kasA 2518853 p.Leu247Ile missense_variant 0.16
folC 2746353 p.Ala416Ser missense_variant 0.14
folC 2746369 c.1230G>A synonymous_variant 0.14
folC 2747355 p.Val82Ile missense_variant 0.14
folC 2747394 p.Ile69Val missense_variant 0.15
folC 2747407 c.192T>C synonymous_variant 0.14
thyA 3073839 c.633T>C synonymous_variant 0.15
thyA 3073860 c.612C>G synonymous_variant 0.15
thyA 3073863 c.609T>C synonymous_variant 0.15
thyA 3073866 c.606C>G synonymous_variant 0.15
thyA 3073872 p.Ile200Met missense_variant 0.15
thyA 3073889 p.Ser195Ala missense_variant 0.16
thyA 3073890 p.Leu194Phe missense_variant 0.16
thyA 3073898 p.Ala192Ser missense_variant 0.16
thyA 3073917 c.555C>G synonymous_variant 0.15
thyA 3073920 c.552C>G synonymous_variant 0.15
thyA 3073925 c.547T>C synonymous_variant 0.18
thyA 3073959 c.513T>C synonymous_variant 0.15
thyA 3073968 c.504C>G synonymous_variant 0.17
thyA 3073977 c.495A>G synonymous_variant 0.15
thyA 3074001 c.471C>G synonymous_variant 0.14
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ddn 3986648 c.-196C>G upstream_gene_variant 0.17
ddn 3986665 c.-179G>C upstream_gene_variant 0.14
panD 4044150 c.132A>C synonymous_variant 0.14
panD 4044159 c.123C>G synonymous_variant 0.17
panD 4044162 c.120A>G synonymous_variant 0.16
panD 4044165 c.117G>C synonymous_variant 0.17
panD 4044174 c.108C>G synonymous_variant 0.15
panD 4044177 c.105C>G synonymous_variant 0.15
panD 4044188 c.94T>C synonymous_variant 0.16
panD 4044189 c.93C>T synonymous_variant 0.16
panD 4044195 c.87T>C synonymous_variant 0.17
embC 4240151 p.Ser97Pro missense_variant 0.14
embC 4240154 p.Gln98Gly missense_variant 0.15
embC 4240160 p.Thr100Ala missense_variant 0.16
embC 4240178 c.316T>C synonymous_variant 0.22
embC 4240183 c.321A>G synonymous_variant 0.21
embC 4240219 c.357C>G synonymous_variant 0.15
embC 4240222 c.360G>A synonymous_variant 0.15
embC 4240229 p.Leu123Met missense_variant 0.14
embC 4240657 c.795G>C synonymous_variant 0.18
embC 4240671 p.Thr270Ile missense_variant 0.14
embC 4240685 p.Thr275Ala missense_variant 0.14
embC 4240698 p.Ala279Gly missense_variant 0.14
embC 4240707 p.Val282Ala missense_variant 0.16
embC 4240726 c.864G>C synonymous_variant 0.21
embC 4240780 c.918T>C synonymous_variant 0.19
embC 4240783 c.921G>C synonymous_variant 0.19
embC 4240789 c.927T>C synonymous_variant 0.18
embC 4240798 c.936C>T synonymous_variant 0.19
embC 4240813 p.Phe317Leu missense_variant 0.16
embC 4240819 c.957A>G synonymous_variant 0.17
embC 4240831 c.969T>G synonymous_variant 0.16
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 1.0
embA 4245044 c.1812G>C synonymous_variant 0.15
embA 4245056 c.1824C>G synonymous_variant 0.19
embA 4245060 c.1828T>C synonymous_variant 0.18
embA 4245065 c.1833G>A synonymous_variant 0.18
embA 4245078 p.Trp616Val missense_variant 0.16
embA 4245083 c.1851A>G synonymous_variant 0.17
embA 4245089 c.1857G>C synonymous_variant 0.18
embA 4245093 p.Ile621Val missense_variant 0.21
embA 4245101 c.1869G>C synonymous_variant 0.24
embA 4245137 c.1905T>C synonymous_variant 0.3
embA 4245149 c.1917C>G synonymous_variant 0.29
embA 4245182 c.1950T>C synonymous_variant 0.26
embA 4245186 p.Thr652Ala missense_variant 0.25
embA 4245198 p.Leu656Ala missense_variant 0.26
embA 4245206 c.1974A>C synonymous_variant 0.24
embA 4245207 c.1975T>C synonymous_variant 0.24
embA 4245215 c.1983A>C synonymous_variant 0.24
embA 4245222 p.Tyr664Gln missense_variant 0.23
embA 4245245 c.2013C>A synonymous_variant 0.19
embA 4245461 c.2229C>G synonymous_variant 0.15
embB 4245726 c.-788T>C upstream_gene_variant 0.18
embB 4245737 c.-777A>C upstream_gene_variant 0.18
embB 4245740 c.-774T>C upstream_gene_variant 0.18
embB 4245743 c.-771C>G upstream_gene_variant 0.18
embB 4245764 c.-750G>C upstream_gene_variant 0.17
embB 4245770 c.-744C>T upstream_gene_variant 0.18
embA 4245771 p.Asn847Ser missense_variant 0.18
embB 4245797 c.-717C>G upstream_gene_variant 0.15
embB 4246331 c.-183C>T upstream_gene_variant 0.14
embA 4246338 p.Leu1036Met missense_variant 0.15
embB 4247428 c.915C>T synonymous_variant 0.2
embB 4247434 c.921C>G synonymous_variant 0.22
embB 4247437 c.924A>G synonymous_variant 0.25
embB 4247446 c.933C>T synonymous_variant 0.24
embB 4247464 c.951C>G synonymous_variant 0.21
embB 4247470 c.957T>C synonymous_variant 0.2
embB 4247485 c.972C>T synonymous_variant 0.22
embB 4247491 c.978G>C synonymous_variant 0.2
embB 4247497 c.984T>C synonymous_variant 0.22
embB 4247512 c.999T>C synonymous_variant 0.22
embB 4247544 p.Ser344Thr missense_variant 0.2
embB 4247554 c.1041T>C synonymous_variant 0.18
embB 4248001 c.1488C>T synonymous_variant 0.21
embB 4248007 c.1494C>G synonymous_variant 0.2
embB 4248008 c.1495C>T synonymous_variant 0.2
embB 4248035 p.Val508Ile missense_variant 0.17
embB 4248041 p.Ala510Thr missense_variant 0.17
embB 4248044 p.Lys511Ser missense_variant 0.18
embB 4248052 c.1539G>C synonymous_variant 0.19
embB 4248055 c.1542G>C synonymous_variant 0.18
embB 4248064 c.1551G>C synonymous_variant 0.2
embB 4248070 c.1557T>C synonymous_variant 0.18
embB 4248085 c.1572T>C synonymous_variant 0.17
embB 4248097 c.1584C>G synonymous_variant 0.21
embB 4248118 c.1605T>A synonymous_variant 0.21
embB 4248130 c.1617G>C synonymous_variant 0.22
embB 4248139 c.1626C>G synonymous_variant 0.23
embB 4248149 p.Thr546Ala missense_variant 0.21
embB 4248157 c.1644A>G synonymous_variant 0.18
embB 4248160 c.1647C>T synonymous_variant 0.18
embB 4248169 c.1656C>A synonymous_variant 0.18
embB 4248172 c.1659G>C synonymous_variant 0.16
embB 4248175 c.1662G>C synonymous_variant 0.16
embB 4248178 c.1665C>T synonymous_variant 0.15
embB 4248181 c.1668C>T synonymous_variant 0.15
embB 4248206 p.Ser565Gly missense_variant 0.16
embB 4248214 c.1701C>A synonymous_variant 0.17
embB 4248220 c.1707A>G synonymous_variant 0.19
embB 4248226 c.1713G>C synonymous_variant 0.18
embB 4249408 c.2895G>A synonymous_variant 1.0
ubiA 4269132 c.702G>C synonymous_variant 0.15
ubiA 4269141 p.Leu231Ile missense_variant 0.16
ubiA 4269144 c.690C>G synonymous_variant 0.15
ubiA 4269164 c.670T>C synonymous_variant 0.17
gid 4407798 c.405G>T synonymous_variant 1.0